Query 024258
Match_columns 270
No_of_seqs 262 out of 2048
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 05:07:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024258.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024258hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.9 1.4E-21 4.8E-26 149.9 10.4 82 13-94 17-98 (99)
2 2dgo_A Cytotoxic granule-assoc 99.8 2E-20 6.7E-25 146.1 13.5 95 4-98 4-98 (115)
3 1x4h_A RNA-binding protein 28; 99.8 3.3E-20 1.1E-24 143.6 11.9 94 3-96 3-102 (111)
4 2cq0_A Eukaryotic translation 99.8 3.4E-20 1.2E-24 142.0 11.8 91 6-96 6-96 (103)
5 3s8s_A Histone-lysine N-methyl 99.8 1.7E-20 5.9E-25 146.6 10.2 86 13-98 4-89 (110)
6 1x5u_A Splicing factor 3B subu 99.8 2.8E-20 9.5E-25 142.8 11.1 93 4-96 4-96 (105)
7 2lxi_A RNA-binding protein 10; 99.8 6.7E-21 2.3E-25 143.7 6.6 84 15-98 1-86 (91)
8 2cqd_A RNA-binding region cont 99.8 1.1E-19 3.8E-24 142.1 13.6 89 7-96 9-97 (116)
9 2cqc_A Arginine/serine-rich sp 99.8 5E-20 1.7E-24 138.5 11.2 92 3-94 3-94 (95)
10 2e5h_A Zinc finger CCHC-type a 99.8 8.4E-20 2.9E-24 137.2 12.3 87 7-93 8-94 (94)
11 1whw_A Hypothetical protein ri 99.8 9.4E-20 3.2E-24 138.3 11.7 86 11-96 4-89 (99)
12 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.2E-20 1.8E-24 136.2 9.9 83 13-95 4-86 (87)
13 2cph_A RNA binding motif prote 99.8 6.8E-20 2.3E-24 140.9 10.7 92 5-96 5-98 (107)
14 3md1_A Nuclear and cytoplasmic 99.8 7.8E-20 2.7E-24 134.1 10.5 82 15-96 1-82 (83)
15 2dnm_A SRP46 splicing factor; 99.8 4.8E-20 1.7E-24 141.1 9.7 89 8-96 6-94 (103)
16 1p27_B RNA-binding protein 8A; 99.8 5.1E-20 1.7E-24 141.5 9.7 89 8-96 16-104 (106)
17 2dgs_A DAZ-associated protein 99.8 9.6E-20 3.3E-24 138.5 11.1 87 9-96 4-90 (99)
18 1wi8_A EIF-4B, eukaryotic tran 99.8 1.1E-19 3.8E-24 139.5 11.5 90 6-97 6-96 (104)
19 2cqb_A Peptidyl-prolyl CIS-tra 99.8 5.9E-20 2E-24 140.2 10.0 88 9-96 6-93 (102)
20 2dng_A Eukaryotic translation 99.8 1.5E-19 5.2E-24 138.4 12.1 88 7-96 7-94 (103)
21 2do4_A Squamous cell carcinoma 99.8 1.6E-19 5.5E-24 137.5 11.9 87 9-96 11-97 (100)
22 3ex7_B RNA-binding protein 8A; 99.8 5.2E-20 1.8E-24 145.9 9.5 92 7-98 14-105 (126)
23 2lkz_A RNA-binding protein 5; 99.8 3.4E-20 1.2E-24 141.5 8.0 86 9-94 3-94 (95)
24 1oo0_B CG8781-PA, drosophila Y 99.8 9.1E-20 3.1E-24 141.2 10.5 90 7-96 18-107 (110)
25 2dnh_A Bruno-like 5, RNA bindi 99.8 1.3E-19 4.6E-24 138.9 11.2 90 6-96 6-98 (105)
26 2do0_A HnRNP M, heterogeneous 99.8 3.4E-19 1.2E-23 138.6 13.3 89 6-95 6-94 (114)
27 1l3k_A Heterogeneous nuclear r 99.8 1.7E-19 6E-24 151.4 12.5 144 8-152 6-187 (196)
28 4f02_A Polyadenylate-binding p 99.8 8.1E-20 2.8E-24 157.4 10.5 85 12-96 12-96 (213)
29 2dnz_A Probable RNA-binding pr 99.8 1.3E-19 4.5E-24 136.3 10.3 84 13-96 3-86 (95)
30 2cpz_A CUG triplet repeat RNA- 99.8 1E-19 3.5E-24 142.1 9.9 87 10-96 20-106 (115)
31 1x5s_A Cold-inducible RNA-bind 99.8 7.7E-20 2.6E-24 139.6 9.0 89 8-96 5-93 (102)
32 2fy1_A RNA-binding motif prote 99.8 1.5E-19 5.1E-24 142.2 10.9 86 11-97 3-88 (116)
33 2dgp_A Bruno-like 4, RNA bindi 99.8 9.1E-20 3.1E-24 140.1 9.1 90 7-96 5-97 (106)
34 2d9p_A Polyadenylate-binding p 99.8 1.8E-19 6.1E-24 137.9 10.7 90 5-96 5-94 (103)
35 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.4E-19 4.8E-24 133.4 9.6 82 12-93 4-85 (85)
36 1x5t_A Splicing factor 3B subu 99.8 1.3E-19 4.5E-24 136.6 9.1 84 13-96 3-87 (96)
37 2x1f_A MRNA 3'-END-processing 99.8 2.6E-19 9E-24 135.4 10.8 84 14-97 1-84 (96)
38 3s7r_A Heterogeneous nuclear r 99.8 3.5E-19 1.2E-23 132.1 11.0 84 8-92 4-87 (87)
39 1u6f_A Tcubp1, RNA-binding pro 99.8 4.5E-19 1.5E-23 142.8 12.6 87 10-96 37-123 (139)
40 2cpe_A RNA-binding protein EWS 99.8 2.7E-19 9.1E-24 139.2 10.7 88 9-96 9-104 (113)
41 2la6_A RNA-binding protein FUS 99.8 2E-19 6.9E-24 136.8 9.8 86 8-93 6-99 (99)
42 2khc_A Testis-specific RNP-typ 99.8 2.3E-19 7.9E-24 140.6 10.4 84 10-93 35-118 (118)
43 2cqi_A Nucleolysin TIAR; RNA r 99.8 5.5E-19 1.9E-23 135.2 12.1 88 7-96 7-94 (103)
44 2cq3_A RNA-binding protein 9; 99.8 6.4E-19 2.2E-23 134.8 12.5 90 5-96 5-94 (103)
45 2dh8_A DAZ-associated protein 99.8 1.9E-19 6.3E-24 138.3 9.5 89 7-96 8-96 (105)
46 2cpy_A RNA-binding protein 12; 99.8 2.5E-19 8.4E-24 140.2 10.2 86 9-96 9-95 (114)
47 3p5t_L Cleavage and polyadenyl 99.8 2.9E-20 1E-24 139.3 4.7 81 16-96 2-84 (90)
48 2div_A TRNA selenocysteine ass 99.8 2.6E-19 9E-24 135.8 9.7 85 11-95 5-94 (99)
49 2cqp_A RNA-binding protein 12; 99.8 2E-19 6.9E-24 136.3 8.9 88 8-95 8-95 (98)
50 4f25_A Polyadenylate-binding p 99.8 2.4E-19 8.3E-24 140.6 9.6 81 14-96 4-84 (115)
51 2ywk_A Putative RNA-binding pr 99.8 2.5E-19 8.7E-24 134.8 9.1 86 7-93 8-93 (95)
52 2jrs_A RNA-binding protein 39; 99.8 2.4E-19 8.3E-24 139.3 9.1 89 8-96 19-107 (108)
53 2cqg_A TDP-43, TAR DNA-binding 99.8 9.2E-19 3.1E-23 133.9 12.1 88 7-96 7-94 (103)
54 1x4a_A Splicing factor, argini 99.8 1.1E-18 3.7E-23 135.0 11.9 87 7-96 14-100 (109)
55 2m2b_A RNA-binding protein 10; 99.8 1.4E-19 4.7E-24 145.0 7.0 88 8-96 16-109 (131)
56 2cpf_A RNA binding motif prote 99.8 3.1E-19 1E-23 135.2 8.5 84 13-96 3-89 (98)
57 3ulh_A THO complex subunit 4; 99.8 6.8E-19 2.3E-23 135.4 10.5 85 8-93 22-106 (107)
58 1p1t_A Cleavage stimulation fa 99.8 9.8E-20 3.3E-24 139.3 5.6 90 10-99 3-92 (104)
59 2dhg_A TRNA selenocysteine ass 99.8 3.6E-19 1.2E-23 136.3 8.6 87 9-96 3-91 (104)
60 1x4c_A Splicing factor, argini 99.8 3.3E-18 1.1E-22 132.4 14.2 85 5-96 5-94 (108)
61 2dgw_A Probable RNA-binding pr 99.8 1.3E-18 4.5E-23 130.1 11.4 85 9-96 4-88 (91)
62 3ns6_A Eukaryotic translation 99.8 7E-20 2.4E-24 140.2 4.4 83 13-95 4-93 (100)
63 4a8x_A RNA-binding protein wit 99.8 5.1E-19 1.8E-23 131.0 8.8 83 14-96 3-86 (88)
64 2ek1_A RNA-binding protein 12; 99.8 1.9E-19 6.4E-24 135.5 6.4 83 11-93 11-93 (95)
65 2kxn_B Transformer-2 protein h 99.8 4E-19 1.4E-23 142.5 8.6 88 9-96 40-127 (129)
66 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-18 4.1E-23 132.1 10.7 83 11-96 5-91 (96)
67 2fc9_A NCL protein; structure 99.8 1.9E-18 6.4E-23 131.7 11.5 85 8-96 8-92 (101)
68 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.3E-18 4.4E-23 143.0 11.4 87 11-97 35-121 (156)
69 3ucg_A Polyadenylate-binding p 99.8 1.1E-18 3.8E-23 129.5 10.0 81 14-95 5-85 (89)
70 2cpi_A CCR4-NOT transcription 99.8 1E-18 3.5E-23 136.0 10.2 89 8-96 8-102 (111)
71 2rs2_A Musashi-1, RNA-binding 99.8 1.3E-18 4.3E-23 135.3 10.6 86 10-96 20-105 (109)
72 2cq4_A RNA binding motif prote 99.8 9.5E-19 3.3E-23 136.4 9.8 82 14-96 24-105 (114)
73 1fxl_A Paraneoplastic encephal 99.8 2.3E-18 7.7E-23 140.4 12.5 125 15-139 2-154 (167)
74 1b7f_A Protein (SXL-lethal pro 99.8 1.8E-18 6.2E-23 141.6 11.7 127 14-140 2-156 (168)
75 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.9E-18 6.3E-23 138.7 11.5 84 9-92 57-140 (140)
76 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.3E-18 4.5E-23 144.6 10.8 90 8-97 65-154 (165)
77 2cjk_A Nuclear polyadenylated 99.8 1.3E-18 4.3E-23 142.6 10.6 133 14-148 2-166 (167)
78 2dgv_A HnRNP M, heterogeneous 99.8 9.4E-19 3.2E-23 130.9 8.9 86 9-96 2-87 (92)
79 2kt5_A RNA and export factor-b 99.8 2.8E-18 9.4E-23 135.8 11.8 85 10-95 30-114 (124)
80 1wg5_A Heterogeneous nuclear r 99.8 2E-18 7E-23 132.8 10.6 85 8-94 8-93 (104)
81 2kn4_A Immunoglobulin G-bindin 99.8 2E-18 6.7E-23 141.8 11.1 87 10-96 65-151 (158)
82 2db1_A Heterogeneous nuclear r 99.8 1.4E-18 4.7E-23 137.0 9.7 84 9-94 11-97 (118)
83 2dis_A Unnamed protein product 99.8 2E-18 6.8E-23 133.2 10.2 86 12-97 5-94 (109)
84 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.2E-19 1.8E-23 135.1 6.8 85 9-95 13-98 (100)
85 1x4b_A Heterogeneous nuclear r 99.8 1E-18 3.4E-23 136.6 8.4 82 14-96 26-107 (116)
86 3n9u_C Cleavage and polyadenyl 99.8 1.4E-18 4.9E-23 143.8 9.8 82 14-95 54-137 (156)
87 2fc8_A NCL protein; structure 99.8 2.4E-18 8.2E-23 131.2 10.3 87 7-96 7-93 (102)
88 1x4e_A RNA binding motif, sing 99.8 3.2E-19 1.1E-23 131.7 5.1 81 13-93 3-83 (85)
89 2lea_A Serine/arginine-rich sp 99.8 5.7E-19 2E-23 142.6 6.7 88 9-96 41-128 (135)
90 2dgu_A Heterogeneous nuclear r 99.8 5.3E-18 1.8E-22 129.9 11.8 85 6-98 2-86 (103)
91 1s79_A Lupus LA protein; RRM, 99.8 1.8E-18 6.1E-23 133.6 8.7 82 11-94 7-88 (103)
92 3md3_A Nuclear and cytoplasmic 99.8 4.5E-18 1.5E-22 138.5 11.5 123 16-139 1-153 (166)
93 2mss_A Protein (musashi1); RNA 99.8 7.5E-19 2.6E-23 126.7 6.1 75 17-92 1-75 (75)
94 2cq1_A PTB-like protein L; RRM 99.8 8E-18 2.7E-22 129.7 11.6 86 5-96 5-92 (101)
95 1wez_A HnRNP H', FTP-3, hetero 99.7 3E-18 1E-22 131.9 9.1 84 9-95 9-92 (102)
96 2jwn_A Embryonic polyadenylate 99.7 3.1E-18 1.1E-22 135.2 9.4 81 14-95 35-115 (124)
97 2qfj_A FBP-interacting repress 99.7 6.2E-18 2.1E-22 144.0 11.6 83 14-96 27-109 (216)
98 2ki2_A SS-DNA binding protein 99.7 5.1E-19 1.7E-23 132.0 4.1 80 16-96 2-81 (90)
99 1x4d_A Matrin 3; structural ge 99.7 3E-18 1E-22 132.5 8.5 83 7-95 7-92 (102)
100 1x5o_A RNA binding motif, sing 99.7 8.3E-18 2.8E-22 130.9 11.0 85 10-95 20-112 (114)
101 2nlw_A Eukaryotic translation 99.7 5.1E-18 1.8E-22 130.8 9.7 83 10-94 10-99 (105)
102 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1E-18 3.5E-23 126.3 5.3 76 16-92 1-76 (77)
103 2cpj_A Non-POU domain-containi 99.7 4.9E-18 1.7E-22 129.1 9.3 88 3-96 3-90 (99)
104 2err_A Ataxin-2-binding protei 99.7 4.8E-18 1.6E-22 131.9 9.2 85 9-95 23-107 (109)
105 2dnn_A RNA-binding protein 12; 99.7 5.7E-18 2E-22 132.3 9.5 82 10-94 11-92 (109)
106 2hgl_A HNRPF protein, heteroge 99.7 4.2E-18 1.4E-22 138.2 8.7 84 9-94 38-124 (136)
107 2a3j_A U1 small nuclear ribonu 99.7 5.4E-18 1.8E-22 136.0 9.1 87 9-98 23-113 (127)
108 2ytc_A PRE-mRNA-splicing facto 99.7 1.1E-17 3.9E-22 123.2 10.0 81 7-93 4-85 (85)
109 1sjq_A Polypyrimidine tract-bi 99.7 4.1E-18 1.4E-22 132.4 7.9 80 11-96 12-93 (105)
110 1wex_A Hypothetical protein (r 99.7 8.4E-18 2.9E-22 130.2 9.3 86 5-96 5-92 (104)
111 1wel_A RNA-binding protein 12; 99.7 1.1E-18 3.8E-23 138.3 4.2 84 11-95 21-104 (124)
112 3q2s_C Cleavage and polyadenyl 99.7 2.6E-18 8.9E-23 150.7 6.8 82 14-95 67-150 (229)
113 1why_A Hypothetical protein ri 99.7 1.6E-17 5.4E-22 125.8 10.2 82 9-96 11-94 (97)
114 2lmi_A GRSF-1, G-rich sequence 99.7 2E-18 7E-23 133.5 5.3 85 8-94 4-91 (107)
115 2dnq_A RNA-binding protein 4B; 99.7 1.3E-17 4.4E-22 124.6 9.5 78 11-96 4-81 (90)
116 1nu4_A U1A RNA binding domain; 99.7 5.8E-18 2E-22 127.8 7.6 85 10-97 3-91 (97)
117 2jvr_A Nucleolar protein 3; RN 99.7 9.8E-18 3.4E-22 131.4 8.7 82 11-96 24-106 (111)
118 2lcw_A RNA-binding protein FUS 99.6 3.4E-19 1.2E-23 139.5 0.0 86 11-96 3-96 (116)
119 1fj7_A Nucleolin RBD1, protein 99.7 1.1E-18 3.7E-23 133.1 2.6 84 11-96 13-96 (101)
120 2e5j_A Methenyltetrahydrofolat 99.7 1.4E-17 4.8E-22 126.2 8.5 82 10-96 14-95 (97)
121 1fje_B Nucleolin RBD12, protei 99.7 9.4E-18 3.2E-22 138.7 8.1 137 10-148 8-174 (175)
122 2xs2_A Deleted in azoospermia- 99.7 6.7E-18 2.3E-22 128.9 6.6 85 9-96 3-87 (102)
123 2krb_A Eukaryotic translation 99.7 5.6E-18 1.9E-22 124.2 5.8 73 15-89 1-80 (81)
124 2dgt_A RNA-binding protein 30; 99.7 4.7E-17 1.6E-21 121.9 11.0 81 8-96 3-83 (92)
125 3r27_A HnRNP L, heterogeneous 99.7 2.4E-17 8.1E-22 127.0 9.3 80 10-95 16-97 (100)
126 2cpx_A Hypothetical protein FL 99.7 4.1E-18 1.4E-22 132.6 5.0 86 11-96 21-106 (115)
127 2wbr_A GW182, gawky, LD47780P; 99.7 2E-17 6.8E-22 124.3 8.3 74 14-93 6-79 (89)
128 1iqt_A AUF1, heterogeneous nuc 99.7 3.8E-18 1.3E-22 122.8 4.2 75 17-92 1-75 (75)
129 3nmr_A Cugbp ELAV-like family 99.7 3.1E-17 1.1E-21 134.8 10.0 126 14-139 2-160 (175)
130 1fjc_A Nucleolin RBD2, protein 99.7 1.5E-17 5.2E-22 125.4 7.4 83 9-96 10-92 (96)
131 2cpd_A Apobec-1 stimulating pr 99.7 9.9E-17 3.4E-21 121.8 12.0 81 8-96 8-90 (99)
132 1x5p_A Negative elongation fac 99.7 9.5E-17 3.2E-21 121.6 11.8 82 7-96 7-88 (97)
133 2jvo_A Nucleolar protein 3; nu 99.7 3.3E-17 1.1E-21 127.2 8.9 80 10-97 26-105 (108)
134 1x4g_A Nucleolysin TIAR; struc 99.7 3.8E-17 1.3E-21 126.4 9.2 81 11-97 21-101 (109)
135 2ad9_A Polypyrimidine tract-bi 99.7 3E-17 1E-21 130.3 8.7 81 10-96 26-108 (119)
136 2la4_A Nuclear and cytoplasmic 99.7 2.4E-17 8.3E-22 125.5 7.7 77 12-94 24-100 (101)
137 2dnp_A RNA-binding protein 14; 99.7 6E-17 2.1E-21 120.9 9.5 79 10-96 4-82 (90)
138 3beg_B Splicing factor, argini 99.7 9.1E-18 3.1E-22 131.6 5.0 81 7-94 8-93 (115)
139 2hvz_A Splicing factor, argini 99.7 2.2E-17 7.5E-22 125.7 7.0 76 16-96 1-76 (101)
140 2xnq_A Nuclear polyadenylated 99.7 8.4E-17 2.9E-21 122.4 10.2 78 10-95 17-95 (97)
141 3md3_A Nuclear and cytoplasmic 99.7 1.2E-16 4.1E-21 130.0 11.8 85 9-93 81-165 (166)
142 2e44_A Insulin-like growth fac 99.7 3.8E-17 1.3E-21 123.2 8.1 83 9-95 9-92 (96)
143 3lqv_A PRE-mRNA branch site pr 99.7 3.1E-17 1E-21 127.8 7.8 80 12-94 5-84 (115)
144 2kvi_A Nuclear polyadenylated 99.7 4.3E-17 1.5E-21 123.3 7.7 79 11-97 6-85 (96)
145 1wf1_A RNA-binding protein RAL 99.7 7.9E-17 2.7E-21 124.7 9.4 77 11-95 23-100 (110)
146 2cqh_A IGF-II mRNA-binding pro 99.7 3.3E-17 1.1E-21 122.9 6.8 79 11-96 4-84 (93)
147 3egn_A RNA-binding protein 40; 99.7 1.4E-17 4.7E-22 134.9 4.7 85 12-96 42-131 (143)
148 2i2y_A Fusion protein consists 99.7 7.2E-17 2.5E-21 131.7 8.9 83 9-96 67-149 (150)
149 2e5g_A U6 snRNA-specific termi 99.7 1.4E-16 4.7E-21 120.0 9.5 78 12-95 5-82 (94)
150 2hgn_A Heterogeneous nuclear r 99.7 1.6E-17 5.6E-22 135.2 4.3 84 10-96 41-124 (139)
151 2f3j_A RNA and export factor b 99.7 9.9E-17 3.4E-21 135.3 9.2 83 11-94 84-166 (177)
152 2hgm_A HNRPF protein, heteroge 99.7 6.9E-17 2.3E-21 129.4 7.6 81 10-93 37-119 (126)
153 1x4f_A Matrin 3; structural ge 99.7 1.1E-16 3.8E-21 125.7 8.6 80 11-96 21-103 (112)
154 3smz_A Protein raver-1, ribonu 99.7 4.4E-16 1.5E-20 138.7 13.6 82 14-95 94-175 (284)
155 1whx_A Hypothetical protein ri 99.7 6.4E-17 2.2E-21 126.1 6.8 78 11-94 6-83 (111)
156 1l3k_A Heterogeneous nuclear r 99.7 2.4E-16 8.1E-21 132.2 10.4 85 12-97 101-185 (196)
157 2dha_A FLJ20171 protein; RRM d 99.7 5.3E-17 1.8E-21 129.5 5.9 81 12-94 20-104 (123)
158 2yh0_A Splicing factor U2AF 65 99.7 2.6E-16 9E-21 132.1 10.4 84 13-96 112-195 (198)
159 2g4b_A Splicing factor U2AF 65 99.7 2.4E-16 8.3E-21 129.5 9.9 82 12-93 91-172 (172)
160 2qfj_A FBP-interacting repress 99.7 2.7E-16 9.1E-21 133.8 10.2 85 13-97 123-207 (216)
161 1wg1_A KIAA1579 protein, homol 99.7 2.6E-16 8.8E-21 117.2 8.5 75 13-94 3-77 (88)
162 2j8a_A Histone-lysine N-methyl 99.7 2E-16 6.9E-21 126.7 8.1 79 16-94 3-95 (136)
163 2dnl_A Cytoplasmic polyadenyla 99.7 3.3E-16 1.1E-20 122.3 9.1 80 11-93 4-86 (114)
164 3pgw_S U1-70K; protein-RNA com 99.7 6.6E-16 2.3E-20 147.4 13.0 85 12-96 99-183 (437)
165 3d2w_A TAR DNA-binding protein 99.6 6.2E-16 2.1E-20 115.9 9.8 79 9-96 5-85 (89)
166 2cjk_A Nuclear polyadenylated 99.6 2.2E-16 7.5E-21 129.1 7.7 81 14-95 86-166 (167)
167 4f02_A Polyadenylate-binding p 99.6 2.8E-16 9.7E-21 135.1 8.0 80 14-95 102-181 (213)
168 2cq2_A Hypothetical protein LO 99.6 5E-16 1.7E-20 122.3 8.7 80 11-96 21-107 (114)
169 1sjr_A Polypyrimidine tract-bi 99.6 7.6E-16 2.6E-20 128.5 10.2 82 10-95 41-124 (164)
170 2g4b_A Splicing factor U2AF 65 99.6 1.3E-15 4.4E-20 125.1 11.1 76 13-95 2-88 (172)
171 1b7f_A Protein (SXL-lethal pro 99.6 1.2E-15 4.2E-20 124.5 10.3 82 11-92 85-168 (168)
172 3sde_A Paraspeckle component 1 99.6 1.9E-15 6.5E-20 133.9 11.9 87 2-94 9-95 (261)
173 3zzy_A Polypyrimidine tract-bi 99.6 1.9E-15 6.4E-20 121.7 10.6 81 10-95 23-106 (130)
174 2hzc_A Splicing factor U2AF 65 99.6 1.1E-15 3.7E-20 112.8 8.0 73 12-91 3-86 (87)
175 1wf0_A TDP-43, TAR DNA-binding 99.6 7.5E-16 2.6E-20 114.4 7.2 77 13-96 3-79 (88)
176 1fxl_A Paraneoplastic encephal 99.6 1.6E-15 5.4E-20 123.4 9.2 81 12-92 85-167 (167)
177 2diu_A KIAA0430 protein; struc 99.6 1.6E-15 5.5E-20 115.1 8.1 74 13-96 6-85 (96)
178 2yh0_A Splicing factor U2AF 65 99.6 4.9E-15 1.7E-19 124.3 12.0 76 13-95 2-88 (198)
179 2e5i_A Heterogeneous nuclear r 99.6 3.8E-15 1.3E-19 119.0 10.6 79 12-96 22-103 (124)
180 3tyt_A Heterogeneous nuclear r 99.6 2.3E-15 7.9E-20 129.5 10.0 78 13-95 2-80 (205)
181 3pgw_A U1-A; protein-RNA compl 99.6 3.5E-15 1.2E-19 132.7 11.4 84 10-96 4-91 (282)
182 2bz2_A Negative elongation fac 99.6 1.7E-15 5.9E-20 120.0 8.1 81 10-98 34-114 (121)
183 1fje_B Nucleolin RBD12, protei 99.6 2.6E-15 8.9E-20 123.9 9.4 80 11-95 95-174 (175)
184 3nmr_A Cugbp ELAV-like family 99.6 2E-15 6.7E-20 124.0 8.6 82 11-93 91-175 (175)
185 2ghp_A U4/U6 snRNA-associated 99.6 3.8E-15 1.3E-19 133.1 10.9 83 13-96 115-198 (292)
186 2pe8_A Splicing factor 45; RRM 99.6 1.1E-14 3.7E-19 112.8 9.8 82 13-94 6-93 (105)
187 2ghp_A U4/U6 snRNA-associated 99.6 9.7E-15 3.3E-19 130.4 10.5 84 11-95 206-291 (292)
188 3smz_A Protein raver-1, ribonu 99.6 1.1E-14 3.8E-19 129.6 10.2 89 10-99 179-268 (284)
189 2voo_A Lupus LA protein; RNA-b 99.6 1.3E-14 4.4E-19 123.9 10.1 77 15-93 109-185 (193)
190 2dit_A HIV TAT specific factor 99.6 2.7E-14 9.4E-19 111.1 10.9 87 6-96 6-103 (112)
191 2adc_A Polypyrimidine tract-bi 99.5 2E-14 6.9E-19 124.8 10.1 80 11-95 30-110 (229)
192 3u1l_A PRE-mRNA-splicing facto 99.5 9.1E-15 3.1E-19 129.1 7.4 82 11-98 130-232 (240)
193 3pgw_A U1-A; protein-RNA compl 99.5 8.6E-14 2.9E-18 123.7 10.8 77 12-93 204-281 (282)
194 1qm9_A Polypyrimidine tract-bi 99.5 2.6E-14 8.9E-19 120.5 6.4 77 14-95 2-79 (198)
195 3tyt_A Heterogeneous nuclear r 99.4 1.1E-13 3.8E-18 119.0 7.4 78 13-92 121-204 (205)
196 3sde_A Paraspeckle component 1 99.4 1.5E-13 5.2E-18 121.6 8.5 81 14-95 95-179 (261)
197 1qm9_A Polypyrimidine tract-bi 99.4 2.1E-13 7.1E-18 114.9 8.5 77 13-94 118-196 (198)
198 1jmt_A Splicing factor U2AF 35 99.4 3.8E-14 1.3E-18 109.4 3.3 72 20-92 20-103 (104)
199 3v4m_A Splicing factor U2AF 65 99.4 3.2E-13 1.1E-17 104.4 8.1 82 13-94 3-96 (105)
200 2adc_A Polypyrimidine tract-bi 99.4 4.5E-13 1.5E-17 116.3 9.4 77 13-94 149-227 (229)
201 3ue2_A Poly(U)-binding-splicin 99.4 8.5E-13 2.9E-17 104.3 7.7 81 14-94 19-108 (118)
202 2d9o_A DNAJ (HSP40) homolog, s 99.3 4.7E-12 1.6E-16 97.2 10.2 75 15-96 10-91 (100)
203 3tht_A Alkylated DNA repair pr 99.3 3.1E-12 1.1E-16 118.4 8.9 77 11-93 14-97 (345)
204 3s6e_A RNA-binding protein 39; 99.2 3.6E-11 1.2E-15 94.4 9.3 78 13-94 5-92 (114)
205 1owx_A Lupus LA protein, SS-B, 99.0 1.2E-09 4E-14 86.6 9.0 80 8-93 11-94 (121)
206 2dnr_A Synaptojanin-1; RRM dom 99.0 1.9E-09 6.5E-14 80.9 8.3 72 15-95 7-86 (91)
207 3dxb_A Thioredoxin N-terminall 98.8 4E-09 1.4E-13 90.7 7.2 67 27-93 141-211 (222)
208 1ufw_A Synaptojanin 2; RNP dom 98.7 1.9E-08 6.6E-13 75.9 5.3 71 14-93 14-93 (95)
209 2l9w_A U4/U6 snRNA-associated- 98.1 1.9E-05 6.3E-10 61.1 8.7 74 14-93 20-98 (117)
210 2kn4_A Immunoglobulin G-bindin 97.8 0.00011 3.7E-09 59.2 9.3 34 44-79 2-35 (158)
211 2dhx_A Poly (ADP-ribose) polym 97.4 0.0027 9.2E-08 48.4 11.3 74 13-95 6-84 (104)
212 1uw4_A UPF3X; nonsense mediate 97.3 0.0011 3.7E-08 49.6 7.9 68 16-83 2-71 (91)
213 1wey_A Calcipressin 1; structu 97.1 0.00065 2.2E-08 51.9 5.4 74 15-94 5-83 (104)
214 1whv_A Poly(A)-specific ribonu 96.9 0.0032 1.1E-07 47.5 7.6 60 9-77 10-69 (100)
215 2i2y_A Fusion protein consists 96.7 0.0012 4.1E-08 52.7 4.4 41 53-94 9-50 (150)
216 1wwh_A Nucleoporin 35, nucleop 96.7 0.0035 1.2E-07 49.0 6.5 75 11-93 20-95 (119)
217 2l08_A Regulator of nonsense t 96.4 0.016 5.4E-07 43.6 8.0 71 14-84 8-80 (97)
218 3ctr_A Poly(A)-specific ribonu 96.2 0.0072 2.4E-07 45.7 5.2 54 16-78 7-60 (101)
219 3pq1_A Poly(A) RNA polymerase; 94.9 0.011 3.9E-07 56.3 2.7 56 15-76 53-108 (464)
220 3p3d_A Nucleoporin 53; structu 94.1 0.058 2E-06 42.7 4.6 76 16-93 8-97 (132)
221 2lea_A Serine/arginine-rich sp 88.5 0.33 1.1E-05 37.8 3.4 88 59-147 6-126 (135)
222 3d45_A Poly(A)-specific ribonu 87.7 1.5 5.2E-05 42.0 8.2 58 13-79 438-495 (507)
223 3pgw_S U1-70K; protein-RNA com 80.9 0.59 2E-05 43.9 1.9 39 110-148 138-182 (437)
224 2lxi_A RNA-binding protein 10; 69.8 9.9 0.00034 26.8 5.7 41 108-148 36-83 (91)
225 2lkz_A RNA-binding protein 5; 60.7 11 0.00039 27.1 4.5 38 109-146 46-93 (95)
226 2cpi_A CCR4-NOT transcription 56.8 14 0.00049 26.9 4.6 40 113-152 60-105 (111)
227 2g0c_A ATP-dependent RNA helic 53.0 22 0.00077 24.2 4.8 68 17-93 2-75 (76)
228 2cqb_A Peptidyl-prolyl CIS-tra 52.6 33 0.0011 24.1 5.9 42 111-152 49-96 (102)
229 3p5t_L Cleavage and polyadenyl 51.8 13 0.00045 25.9 3.5 37 112-148 41-83 (90)
230 2dnz_A Probable RNA-binding pr 50.7 20 0.0007 24.8 4.4 42 113-154 44-91 (95)
231 1rk8_A CG8781-PA, CG8781-PA pr 50.3 8.5 0.00029 30.4 2.4 39 110-148 108-152 (165)
232 2fc8_A NCL protein; structure 47.8 22 0.00076 25.0 4.3 41 112-152 50-96 (102)
233 4fxv_A ELAV-like protein 1; RN 46.1 12 0.00042 26.9 2.6 34 112-145 57-96 (99)
234 1x5s_A Cold-inducible RNA-bind 45.5 31 0.0011 24.2 4.8 41 112-152 50-96 (102)
235 2fc9_A NCL protein; structure 45.2 37 0.0013 23.8 5.2 39 112-150 49-93 (101)
236 2cpe_A RNA-binding protein EWS 44.5 37 0.0013 24.4 5.1 41 111-151 60-106 (113)
237 2dgx_A KIAA0430 protein; RRM d 44.5 27 0.00091 24.6 4.2 37 116-152 52-94 (96)
238 2dgv_A HnRNP M, heterogeneous 43.1 15 0.00053 25.3 2.7 40 113-152 45-90 (92)
239 2dgs_A DAZ-associated protein 43.0 33 0.0011 24.0 4.5 39 112-150 48-91 (99)
240 1x4b_A Heterogeneous nuclear r 42.4 45 0.0015 24.1 5.3 40 112-151 65-109 (116)
241 2rs2_A Musashi-1, RNA-binding 41.3 37 0.0013 24.5 4.7 38 112-149 63-105 (109)
242 1x5t_A Splicing factor 3B subu 41.0 45 0.0015 23.0 5.0 39 111-149 43-87 (96)
243 1whw_A Hypothetical protein ri 39.9 58 0.002 22.6 5.5 39 112-150 46-90 (99)
244 1fjc_A Nucleolin RBD2, protein 39.4 24 0.00081 24.6 3.2 38 113-150 50-93 (96)
245 2fy1_A RNA-binding motif prote 39.3 37 0.0013 24.9 4.5 43 112-154 44-92 (116)
246 2dh8_A DAZ-associated protein 38.1 32 0.0011 24.3 3.8 40 113-152 55-99 (105)
247 2cpz_A CUG triplet repeat RNA- 38.1 41 0.0014 24.3 4.5 38 113-150 64-107 (115)
248 4f25_A Polyadenylate-binding p 37.6 16 0.00054 26.9 2.0 34 115-148 44-83 (115)
249 2cqg_A TDP-43, TAR DNA-binding 37.5 42 0.0014 23.6 4.4 39 113-151 54-96 (103)
250 2dnn_A RNA-binding protein 12; 36.8 37 0.0013 24.9 4.0 33 113-145 53-90 (109)
251 2cpx_A Hypothetical protein FL 36.5 46 0.0016 23.9 4.5 39 112-150 63-107 (115)
252 2dgw_A Probable RNA-binding pr 36.2 37 0.0013 23.3 3.8 37 112-148 46-87 (91)
253 2x1f_A MRNA 3'-END-processing 35.4 40 0.0014 23.4 3.9 36 112-147 40-81 (96)
254 1fj7_A Nucleolin RBD1, protein 35.1 33 0.0011 24.1 3.4 38 113-150 55-97 (101)
255 2jrs_A RNA-binding protein 39; 34.9 23 0.00078 25.7 2.5 37 113-149 65-107 (108)
256 2j76_E EIF-4B, EIF4B, eukaryot 34.7 28 0.00096 24.6 3.0 27 112-138 57-83 (100)
257 2cq3_A RNA-binding protein 9; 34.6 54 0.0018 23.0 4.6 38 115-152 54-97 (103)
258 3s8s_A Histone-lysine N-methyl 33.4 26 0.0009 25.6 2.7 28 112-139 44-72 (110)
259 2cqi_A Nucleolysin TIAR; RNA r 33.4 69 0.0024 22.4 5.0 35 115-149 54-94 (103)
260 2dnm_A SRP46 splicing factor; 32.8 50 0.0017 23.2 4.1 36 113-148 52-93 (103)
261 1x5u_A Splicing factor 3B subu 32.7 49 0.0017 23.3 4.1 39 112-150 53-97 (105)
262 2dgp_A Bruno-like 4, RNA bindi 31.7 62 0.0021 22.7 4.5 39 112-150 51-98 (106)
263 2dng_A Eukaryotic translation 30.0 36 0.0012 24.1 2.9 39 113-151 53-96 (103)
264 2a3j_A U1 small nuclear ribonu 29.7 34 0.0012 25.9 2.8 35 114-148 70-110 (127)
265 2err_A Ataxin-2-binding protei 29.6 49 0.0017 23.8 3.6 33 115-147 68-106 (109)
266 1x4f_A Matrin 3; structural ge 29.0 56 0.0019 24.3 3.9 39 115-153 61-107 (112)
267 2cpf_A RNA binding motif prote 28.6 37 0.0013 23.6 2.7 38 113-150 47-90 (98)
268 1wez_A HnRNP H', FTP-3, hetero 28.4 35 0.0012 24.5 2.6 36 112-147 51-91 (102)
269 2div_A TRNA selenocysteine ass 28.4 46 0.0016 23.1 3.2 29 112-140 48-77 (99)
270 1oo0_B CG8781-PA, drosophila Y 27.8 60 0.0021 23.0 3.9 36 112-147 64-105 (110)
271 1x5p_A Negative elongation fac 27.6 85 0.0029 21.7 4.6 37 114-150 47-89 (97)
272 2cpj_A Non-POU domain-containi 26.6 73 0.0025 22.1 4.1 37 116-152 51-93 (99)
273 1u6f_A Tcubp1, RNA-binding pro 26.3 60 0.0021 24.1 3.8 39 113-151 81-125 (139)
274 3n9u_C Cleavage and polyadenyl 26.3 31 0.0011 27.0 2.1 35 111-145 94-134 (156)
275 2kxn_B Transformer-2 protein h 26.2 70 0.0024 23.9 4.1 35 113-147 85-125 (129)
276 1x4a_A Splicing factor, argini 25.0 95 0.0032 21.9 4.5 36 115-150 60-101 (109)
277 2dit_A HIV TAT specific factor 24.8 1E+02 0.0035 22.1 4.7 36 115-150 63-104 (112)
278 3ex7_B RNA-binding protein 8A; 24.4 72 0.0024 23.3 3.8 40 112-151 60-105 (126)
279 2ku7_A MLL1 PHD3-CYP33 RRM chi 21.8 1.1E+02 0.0037 22.5 4.4 23 111-133 100-122 (140)
280 2kt5_A RNA and export factor-b 21.6 1.1E+02 0.0039 22.1 4.4 35 113-147 73-113 (124)
281 3egn_A RNA-binding protein 40; 21.4 71 0.0024 24.0 3.3 35 113-147 89-129 (143)
282 2diu_A KIAA0430 protein; struc 20.6 66 0.0022 23.6 2.7 36 117-152 47-88 (96)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=149.89 Aligned_cols=82 Identities=30% Similarity=0.504 Sum_probs=79.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.++++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.++|++|++.|||..++|++|+|+++
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 024258 93 KY 94 (270)
Q Consensus 93 ~~ 94 (270)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred eC
Confidence 75
No 2
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.84 E-value=2e-20 Score=146.06 Aligned_cols=95 Identities=24% Similarity=0.482 Sum_probs=87.0
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe
Q 024258 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (270)
Q Consensus 4 ~~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~ 83 (270)
.+.....+..+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.|||..+.
T Consensus 4 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (115)
T 2dgo_A 4 GSSGQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG 83 (115)
T ss_dssp SCCSSCCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET
T ss_pred CCCcCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 34445667778999999999999999999999999999999999999889999999999999999999999999999999
Q ss_pred ccEEEEEEcccCCch
Q 024258 84 GREITVQFAKYGPNA 98 (270)
Q Consensus 84 Gr~I~V~~a~~~~~~ 98 (270)
|+.|+|++++++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 84 GRQIRTNWATRKPPA 98 (115)
T ss_dssp TEECEEEESSCCCCC
T ss_pred CEEEEEEEccCCCCC
Confidence 999999999865543
No 3
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=143.59 Aligned_cols=94 Identities=22% Similarity=0.396 Sum_probs=86.7
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcC----
Q 024258 3 HFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD---- 78 (270)
Q Consensus 3 ~~~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Ln---- 78 (270)
+.++..+....+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||
T Consensus 3 ~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~ 82 (111)
T 1x4h_A 3 SGSSGLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAE 82 (111)
T ss_dssp CCCCCCCCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTT
T ss_pred CCCCCCCCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccc
Confidence 3445556777789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred --CeeEeccEEEEEEcccCC
Q 024258 79 --GRVVDGREITVQFAKYGP 96 (270)
Q Consensus 79 --g~~l~Gr~I~V~~a~~~~ 96 (270)
+..+.|+.|+|+++.++.
T Consensus 83 ~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 83 GGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp TCCEESSSCEEEEECCCCCC
T ss_pred cCCcEEcCEEEEEEECCCCc
Confidence 999999999999998654
No 4
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=141.96 Aligned_cols=91 Identities=27% Similarity=0.491 Sum_probs=84.6
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc
Q 024258 6 RSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (270)
Q Consensus 6 ~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr 85 (270)
.....+..+.++|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|++|++.||+..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (103)
T 2cq0_A 6 SGPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHL 85 (103)
T ss_dssp CCSCCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCc
Confidence 33455677889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcccCC
Q 024258 86 EITVQFAKYGP 96 (270)
Q Consensus 86 ~I~V~~a~~~~ 96 (270)
.|+|++++++.
T Consensus 86 ~l~v~~a~~~~ 96 (103)
T 2cq0_A 86 ILNVEWAKPST 96 (103)
T ss_dssp ECEEEESSCCC
T ss_pred EEEEEECCCCC
Confidence 99999998654
No 5
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.83 E-value=1.7e-20 Score=146.60 Aligned_cols=86 Identities=22% Similarity=0.205 Sum_probs=80.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.+.++|||+|||+++++++|+++|++||.|.++++++|+.|++++|||||+|.+.++|++|++.|||..+.|+.|+|+++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCch
Q 024258 93 KYGPNA 98 (270)
Q Consensus 93 ~~~~~~ 98 (270)
......
T Consensus 84 ~~~~~~ 89 (110)
T 3s8s_A 84 IKGQQR 89 (110)
T ss_dssp STTHHH
T ss_pred CCCcHH
Confidence 754433
No 6
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.8e-20 Score=142.76 Aligned_cols=93 Identities=24% Similarity=0.345 Sum_probs=85.7
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe
Q 024258 4 FGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (270)
Q Consensus 4 ~~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~ 83 (270)
.+...+.+..+.++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.||+..+.
T Consensus 4 ~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 83 (105)
T 1x5u_A 4 GSSGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY 83 (105)
T ss_dssp CSSCCCCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS
T ss_pred CCCCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC
Confidence 33445566778899999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred ccEEEEEEcccCC
Q 024258 84 GREITVQFAKYGP 96 (270)
Q Consensus 84 Gr~I~V~~a~~~~ 96 (270)
|+.|+|+++.++.
T Consensus 84 g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 84 GKPIRVNKASAHN 96 (105)
T ss_dssp SCBCEEEETTTTS
T ss_pred CeEEEEEECCCCC
Confidence 9999999998544
No 7
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.82 E-value=6.7e-21 Score=143.70 Aligned_cols=84 Identities=19% Similarity=0.404 Sum_probs=77.4
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcC-CeeEeccEEEEEEc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD-GRVVDGREITVQFA 92 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Ln-g~~l~Gr~I~V~~a 92 (270)
+++|||+|||++++|++|+++|++|| .|.+|++++|+.+|+++|||||+|.+.++|++|++.++ +..++|++|+|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 46899999999999999999999999 89999999999999999999999999999999999875 56799999999999
Q ss_pred ccCCch
Q 024258 93 KYGPNA 98 (270)
Q Consensus 93 ~~~~~~ 98 (270)
.++++.
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
Confidence 866543
No 8
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=142.10 Aligned_cols=89 Identities=28% Similarity=0.501 Sum_probs=82.9
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
..+....+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.+++ .+.|+.
T Consensus 9 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~ 87 (116)
T 2cqd_A 9 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRK 87 (116)
T ss_dssp CCCCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEE
T ss_pred CCCcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEE
Confidence 4456677889999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++.++.
T Consensus 88 l~V~~a~~~~ 97 (116)
T 2cqd_A 88 ANVNLAYLGA 97 (116)
T ss_dssp CEEEESTTTC
T ss_pred EEEEEcccCC
Confidence 9999998544
No 9
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5e-20 Score=138.52 Aligned_cols=92 Identities=33% Similarity=0.495 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE
Q 024258 3 HFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (270)
Q Consensus 3 ~~~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l 82 (270)
+.+++......+.++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.|||..+
T Consensus 3 ~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (95)
T 2cqc_A 3 SGSSGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 82 (95)
T ss_dssp CCCCCCCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 33445556677789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccEEEEEEccc
Q 024258 83 DGREITVQFAKY 94 (270)
Q Consensus 83 ~Gr~I~V~~a~~ 94 (270)
.|++|+|++++.
T Consensus 83 ~g~~l~v~~a~~ 94 (95)
T 2cqc_A 83 DGRRIRVSGPSS 94 (95)
T ss_dssp TTEEEEEECCSC
T ss_pred CCEEEEEEecCC
Confidence 999999999873
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.4e-20 Score=137.19 Aligned_cols=87 Identities=31% Similarity=0.490 Sum_probs=81.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
.......+.++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.||+..+.|++
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 87 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRV 87 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34455667889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcc
Q 024258 87 ITVQFAK 93 (270)
Q Consensus 87 I~V~~a~ 93 (270)
|+|++++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9999974
No 11
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=9.4e-20 Score=138.33 Aligned_cols=86 Identities=30% Similarity=0.550 Sum_probs=81.4
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 44578999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EcccCC
Q 024258 91 FAKYGP 96 (270)
Q Consensus 91 ~a~~~~ 96 (270)
+++++.
T Consensus 84 ~a~~~~ 89 (99)
T 1whw_A 84 PSTIKK 89 (99)
T ss_dssp ECCCCS
T ss_pred EcCCCc
Confidence 998654
No 12
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.82 E-value=5.2e-20 Score=136.23 Aligned_cols=83 Identities=23% Similarity=0.480 Sum_probs=77.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.+.++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccC
Q 024258 93 KYG 95 (270)
Q Consensus 93 ~~~ 95 (270)
+++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 854
No 13
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=6.8e-20 Score=140.89 Aligned_cols=92 Identities=27% Similarity=0.518 Sum_probs=85.0
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEccc-CCCCCcccEEEEEEcCHHHHHHHHHhc-CCeeE
Q 024258 5 GRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRD-RRTGDSRGFAFVRYKYADEAQKAVDRL-DGRVV 82 (270)
Q Consensus 5 ~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d-~~tg~skG~aFV~F~s~e~A~~Al~~L-ng~~l 82 (270)
+...+....+.++|||+|||+++++++|+++|++||.|.+|.++++ +.+++++|||||+|.+.++|++|++.| |+..+
T Consensus 5 s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 5 SSGQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp CCCSSCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred CCcccccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 3445566778899999999999999999999999999999999999 789999999999999999999999999 99999
Q ss_pred eccEEEEEEcccCC
Q 024258 83 DGREITVQFAKYGP 96 (270)
Q Consensus 83 ~Gr~I~V~~a~~~~ 96 (270)
.|+.|+|++++++.
T Consensus 85 ~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 85 YGRRLVLEWADSEV 98 (107)
T ss_dssp SSCBCEEEECCCCC
T ss_pred CCCEEEEEeCCCCC
Confidence 99999999998654
No 14
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.82 E-value=7.8e-20 Score=134.14 Aligned_cols=82 Identities=27% Similarity=0.508 Sum_probs=78.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
+++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.|||..++|+.|+|+++++
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred CC
Q 024258 95 GP 96 (270)
Q Consensus 95 ~~ 96 (270)
+.
T Consensus 81 ~~ 82 (83)
T 3md1_A 81 LE 82 (83)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 15
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.8e-20 Score=141.08 Aligned_cols=89 Identities=46% Similarity=0.806 Sum_probs=83.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+++..+.++|||+|||+++++++|+++|++||.|.++.+..++.+++++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 85 (103)
T 2dnm_A 6 SGPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGREL 85 (103)
T ss_dssp CSSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCC
T ss_pred CCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 45566778999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|+++++..
T Consensus 86 ~V~~a~~~~ 94 (103)
T 2dnm_A 86 RVQVARYGR 94 (103)
T ss_dssp EEEECSSCC
T ss_pred EEEECCcCC
Confidence 999998543
No 16
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.1e-20 Score=141.52 Aligned_cols=89 Identities=30% Similarity=0.555 Sum_probs=83.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+....+.++|||+|||+++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 16 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 16 GPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp CBCCBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|+++.+++
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999998654
No 17
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=9.6e-20 Score=138.45 Aligned_cols=87 Identities=20% Similarity=0.355 Sum_probs=81.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.....+.++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++ ||+..+.|+.|+
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~ 82 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVE 82 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEE
Confidence 3445677899999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|+++.++.
T Consensus 83 V~~a~~~~ 90 (99)
T 2dgs_A 83 VKRAEPRD 90 (99)
T ss_dssp EEECCCCC
T ss_pred EEECCCCc
Confidence 99998544
No 18
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.1e-19 Score=139.47 Aligned_cols=90 Identities=16% Similarity=0.357 Sum_probs=82.0
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC-CCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 6 RSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 6 ~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~t-g~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
+..+....+.++|||+|||+++++++|+++|++|| |.+|.+++++.+ ++++|||||+|.+.++|++|+ .||+..+.|
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 6 SGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 34445556789999999999999999999999999 999999999888 999999999999999999999 899999999
Q ss_pred cEEEEEEcccCCc
Q 024258 85 REITVQFAKYGPN 97 (270)
Q Consensus 85 r~I~V~~a~~~~~ 97 (270)
+.|+|+++.++..
T Consensus 84 ~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 84 KRIRVDVADQAQD 96 (104)
T ss_dssp EECEEEECCCCCC
T ss_pred cEEEEEEccCCCC
Confidence 9999999986543
No 19
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=5.9e-20 Score=140.19 Aligned_cols=88 Identities=32% Similarity=0.431 Sum_probs=82.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.....+.++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 6 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2cqb_A 6 SGMATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 85 (102)
T ss_dssp SCSCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCcCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34455788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|++++++.
T Consensus 86 V~~a~~~~ 93 (102)
T 2cqb_A 86 VNLAKPMR 93 (102)
T ss_dssp EEECCCCC
T ss_pred EEeCCCCC
Confidence 99998654
No 20
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.81 E-value=1.5e-19 Score=138.42 Aligned_cols=88 Identities=23% Similarity=0.423 Sum_probs=81.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
..+....+.++|||+|||+++++++|+++|++|| |.+|++++++.+++++|||||+|.+.++|++|+ .||+..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~ 84 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRS 84 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEE
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeE
Confidence 3455666789999999999999999999999997 999999999999999999999999999999999 79999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++.++.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dng_A 85 LRVDIAEGRK 94 (103)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998544
No 21
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=137.46 Aligned_cols=87 Identities=25% Similarity=0.477 Sum_probs=81.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.....+.++|||+|||+++++++|+++|++||.|.++.+..++ +++++|||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 11 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 89 (100)
T 2do4_A 11 YSTSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIK 89 (100)
T ss_dssp CSSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 3455678999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|+++++++
T Consensus 90 v~~a~~~~ 97 (100)
T 2do4_A 90 VAISNSGP 97 (100)
T ss_dssp EEECCCCS
T ss_pred EEECCCCC
Confidence 99998654
No 22
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.81 E-value=5.2e-20 Score=145.90 Aligned_cols=92 Identities=29% Similarity=0.536 Sum_probs=85.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
+.+....+.++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 14 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 93 (126)
T 3ex7_B 14 PGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQP 93 (126)
T ss_dssp CCBCCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSB
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcccCCch
Q 024258 87 ITVQFAKYGPNA 98 (270)
Q Consensus 87 I~V~~a~~~~~~ 98 (270)
|+|+++.++...
T Consensus 94 l~v~~a~~~~~~ 105 (126)
T 3ex7_B 94 ISVDWCFVRGPP 105 (126)
T ss_dssp CEEEESEESSSC
T ss_pred EEEEEecCCCCC
Confidence 999999865543
No 23
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-20 Score=141.49 Aligned_cols=86 Identities=29% Similarity=0.457 Sum_probs=78.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCC--eEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe----eE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGK--VVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR----VV 82 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~--I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~----~l 82 (270)
......-.+|||+|||+++|+++|+++|++||. +.+|++++|+.||++||||||+|.+.++|++|++.|||. .+
T Consensus 3 ~~~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i 82 (95)
T 2lkz_A 3 HHHHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKI 82 (95)
T ss_dssp CCSSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEE
T ss_pred cccCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceE
Confidence 344556679999999999999999999999995 679999999999999999999999999999999999996 58
Q ss_pred eccEEEEEEccc
Q 024258 83 DGREITVQFAKY 94 (270)
Q Consensus 83 ~Gr~I~V~~a~~ 94 (270)
+||+|.|+++++
T Consensus 83 ~Gr~i~V~~Aks 94 (95)
T 2lkz_A 83 DGKTIGVDFAKS 94 (95)
T ss_dssp TTEEEEEEECCC
T ss_pred CCEEEEEEEccC
Confidence 999999999874
No 24
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.81 E-value=9.1e-20 Score=141.17 Aligned_cols=90 Identities=30% Similarity=0.508 Sum_probs=84.1
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
+.+....+.++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 18 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 18 PGPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CCBCCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 44556677899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++.+++
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999998654
No 25
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.81 E-value=1.3e-19 Score=138.93 Aligned_cols=90 Identities=24% Similarity=0.385 Sum_probs=82.2
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec-
Q 024258 6 RSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG- 84 (270)
Q Consensus 6 ~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G- 84 (270)
........+.++|||+|||+++++++|+++|++||.|.++.+.+++ +++++|||||+|.+.++|++|++.|||..+.|
T Consensus 6 ~~~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg 84 (105)
T 2dnh_A 6 SGSESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPG 84 (105)
T ss_dssp CCCCCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTT
T ss_pred ccccccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 3344455678999999999999999999999999999999999997 89999999999999999999999999999988
Q ss_pred --cEEEEEEcccCC
Q 024258 85 --REITVQFAKYGP 96 (270)
Q Consensus 85 --r~I~V~~a~~~~ 96 (270)
+.|+|+++++++
T Consensus 85 ~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 85 ASSSLVVKFADTDK 98 (105)
T ss_dssp CSSCCEEEESCSSC
T ss_pred CCccEEEEECccCc
Confidence 999999998654
No 26
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.4e-19 Score=138.62 Aligned_cols=89 Identities=22% Similarity=0.321 Sum_probs=82.0
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc
Q 024258 6 RSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (270)
Q Consensus 6 ~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr 85 (270)
........+.++|||+|||+++++++|+++|++||.|.++.+++++ +++++|||||+|.+.++|++|++.||+..+.|+
T Consensus 6 ~~~~~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (114)
T 2do0_A 6 SGALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK-DGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDR 84 (114)
T ss_dssp CCCCCCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TCSEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCC
Confidence 3445566778999999999999999999999999999999999997 699999999999999999999999999999999
Q ss_pred EEEEEEcccC
Q 024258 86 EITVQFAKYG 95 (270)
Q Consensus 86 ~I~V~~a~~~ 95 (270)
.|+|++++..
T Consensus 85 ~l~v~~a~~~ 94 (114)
T 2do0_A 85 PMHVKMDERA 94 (114)
T ss_dssp ECEEEECSCC
T ss_pred EEEEEEcccC
Confidence 9999998754
No 27
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.81 E-value=1.7e-19 Score=151.43 Aligned_cols=144 Identities=24% Similarity=0.354 Sum_probs=106.6
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+.+..+.++|||+|||+++++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|++|++. ++..+.|+.|
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l 84 (196)
T 1l3k_A 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVV 84 (196)
T ss_dssp --CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEe
Confidence 455667889999999999999999999999999999999999999999999999999999999999985 9999999999
Q ss_pred EEEEcccCCchhhhcc----c-----------------------------cccCCCCCCCCcceEEEcCCchHHHHHHHH
Q 024258 88 TVQFAKYGPNAERIKE----G-----------------------------LLNHSRDRSTGQGVAVLGEDTEMITEIEII 134 (270)
Q Consensus 88 ~V~~a~~~~~~~~~~~----~-----------------------------~~~~~~~~~~~rg~~~v~~~~~~~~~~~~~ 134 (270)
.|.++.+......... . ........+..+|++|+.|.+.........
T Consensus 85 ~v~~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~ 164 (196)
T 1l3k_A 85 EPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164 (196)
T ss_dssp EEEECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH
T ss_pred eeecccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH
Confidence 9999875432211100 0 122223456678999999996555444443
Q ss_pred -----hCCcEEEeccccccccCC
Q 024258 135 -----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 135 -----~~G~~~~v~~~~~~~~~~ 152 (270)
++|+.+.+..+.++....
T Consensus 165 ~~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 165 QKYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp CSCCEETTEECEEEECC------
T ss_pred hCCcEECCEEEEEEecCChhHhc
Confidence 667777777776655543
No 28
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.81 E-value=8.1e-20 Score=157.39 Aligned_cols=85 Identities=25% Similarity=0.417 Sum_probs=78.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
..+.++|||+|||++++|++|+++|++||+|.+|++++|+.+++++|||||+|.+.++|++|++.+|+..+.|+.+++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 024258 92 AKYGP 96 (270)
Q Consensus 92 a~~~~ 96 (270)
+....
T Consensus 92 ~~~~~ 96 (213)
T 4f02_A 92 SQRDP 96 (213)
T ss_dssp CCCCT
T ss_pred ccccc
Confidence 87544
No 29
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.3e-19 Score=136.35 Aligned_cols=84 Identities=27% Similarity=0.523 Sum_probs=80.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.+.++|||+|||+++++++|+++|++||.|.++.+.+++.+++++|||||+|.+.++|++|++.||+..++|+.|+|+++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCC
Q 024258 93 KYGP 96 (270)
Q Consensus 93 ~~~~ 96 (270)
.++.
T Consensus 83 ~~~~ 86 (95)
T 2dnz_A 83 TERL 86 (95)
T ss_dssp SCCC
T ss_pred cccc
Confidence 8544
No 30
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.81 E-value=1e-19 Score=142.12 Aligned_cols=87 Identities=23% Similarity=0.379 Sum_probs=81.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
....+.++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 44456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
++++++.
T Consensus 100 ~~a~~~~ 106 (115)
T 2cpz_A 100 QLKRSKN 106 (115)
T ss_dssp ECCCCSC
T ss_pred EEcCCCC
Confidence 9998554
No 31
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.7e-20 Score=139.56 Aligned_cols=89 Identities=34% Similarity=0.589 Sum_probs=82.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
......+.++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 5 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 84 (102)
T 1x5s_A 5 SSGMASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQI 84 (102)
T ss_dssp CCCCCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCC
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|++++++.
T Consensus 85 ~v~~a~~~~ 93 (102)
T 1x5s_A 85 RVDQAGKSS 93 (102)
T ss_dssp EEEEEECCC
T ss_pred EEEECCCCC
Confidence 999998544
No 32
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=142.19 Aligned_cols=86 Identities=27% Similarity=0.487 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
+..+.++|||+|||+++++++|+++|++||.|.+|.+..++ +|+++|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 024258 91 FAKYGPN 97 (270)
Q Consensus 91 ~a~~~~~ 97 (270)
+++++..
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9986543
No 33
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.80 E-value=9.1e-20 Score=140.09 Aligned_cols=90 Identities=30% Similarity=0.404 Sum_probs=83.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE---e
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV---D 83 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l---~ 83 (270)
+.+....+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.||+..+ .
T Consensus 5 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~ 84 (106)
T 2dgp_A 5 SSGMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM 84 (106)
T ss_dssp CCSCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC
Confidence 4455667789999999999999999999999999999999999999999999999999999999999999999998 8
Q ss_pred ccEEEEEEcccCC
Q 024258 84 GREITVQFAKYGP 96 (270)
Q Consensus 84 Gr~I~V~~a~~~~ 96 (270)
|+.|+|+++.++.
T Consensus 85 g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 85 NRPIQVKPADSES 97 (106)
T ss_dssp SSCCEEEECCCCS
T ss_pred CceEEEEECCccc
Confidence 9999999998544
No 34
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=137.89 Aligned_cols=90 Identities=24% Similarity=0.389 Sum_probs=82.5
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 5 GRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 5 ~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
++.......+.++|||+|||+++++++|+++|++||.|.++.+..+ +++++|||||+|.+.++|++|++.||+..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 5 SSGDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp CCCCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3344556668899999999999999999999999999999999988 89999999999999999999999999999999
Q ss_pred cEEEEEEcccCC
Q 024258 85 REITVQFAKYGP 96 (270)
Q Consensus 85 r~I~V~~a~~~~ 96 (270)
+.|+|++++++.
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2d9p_A 83 KPLYVALAQRKE 94 (103)
T ss_dssp SBCEEEECSSCC
T ss_pred cEEEEEEecccc
Confidence 999999998654
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.80 E-value=1.4e-19 Score=133.36 Aligned_cols=82 Identities=34% Similarity=0.510 Sum_probs=78.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
..+.++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc
Q 024258 92 AK 93 (270)
Q Consensus 92 a~ 93 (270)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 36
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=1.3e-19 Score=136.60 Aligned_cols=84 Identities=25% Similarity=0.480 Sum_probs=80.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDI-FIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v-~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.+.++|||+|||+++++++|+++|++||.|.++ ++++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 024258 92 AKYGP 96 (270)
Q Consensus 92 a~~~~ 96 (270)
+.++.
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98544
No 37
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.80 E-value=2.6e-19 Score=135.40 Aligned_cols=84 Identities=20% Similarity=0.418 Sum_probs=79.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
++++|||+|||+++++++|+++|++||.|.+++++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCc
Q 024258 94 YGPN 97 (270)
Q Consensus 94 ~~~~ 97 (270)
++..
T Consensus 81 ~~~~ 84 (96)
T 2x1f_A 81 NSDI 84 (96)
T ss_dssp CSSG
T ss_pred CCCC
Confidence 6553
No 38
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.80 E-value=3.5e-19 Score=132.06 Aligned_cols=84 Identities=35% Similarity=0.522 Sum_probs=76.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+....+.++|||+|||+++++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|++ +++..++|+.|
T Consensus 4 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i 82 (87)
T 3s7r_A 4 ASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVI 82 (87)
T ss_dssp ---CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEE
Confidence 34556778999999999999999999999999999999999999999999999999999999999997 58899999999
Q ss_pred EEEEc
Q 024258 88 TVQFA 92 (270)
Q Consensus 88 ~V~~a 92 (270)
+|++|
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99875
No 39
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=4.5e-19 Score=142.76 Aligned_cols=87 Identities=30% Similarity=0.481 Sum_probs=81.9
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
++....++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
++++++.
T Consensus 117 ~~a~~~~ 123 (139)
T 1u6f_A 117 ALAASGH 123 (139)
T ss_dssp EESSCCC
T ss_pred EECCCCC
Confidence 9998554
No 40
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=139.15 Aligned_cols=88 Identities=32% Similarity=0.476 Sum_probs=82.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeE--------EEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVV--------DIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~--------~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~ 80 (270)
+.+..+.++|||+|||+++++++|+++|++||.|. .+++..++.+++++|||||+|.+.++|++|++.||+.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34667889999999999999999999999999999 6999999999999999999999999999999999999
Q ss_pred eEeccEEEEEEcccCC
Q 024258 81 VVDGREITVQFAKYGP 96 (270)
Q Consensus 81 ~l~Gr~I~V~~a~~~~ 96 (270)
.+.|+.|+|++++++.
T Consensus 89 ~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 89 DFQGSKLKVSLARKKP 104 (113)
T ss_dssp EETTEECEEECSSCCC
T ss_pred ccCCCEEEEEECCCCC
Confidence 9999999999998654
No 41
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=136.77 Aligned_cols=86 Identities=27% Similarity=0.404 Sum_probs=81.0
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVD--------IFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~--------v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng 79 (270)
.+......++|||+|||+++++++|+++|++||.|.+ +++++++.+|+++|||||+|.+.++|++|++.|||
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g 85 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDG 85 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTT
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCC
Confidence 4556667899999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred eeEeccEEEEEEcc
Q 024258 80 RVVDGREITVQFAK 93 (270)
Q Consensus 80 ~~l~Gr~I~V~~a~ 93 (270)
..+.|+.|+|++++
T Consensus 86 ~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 86 KEFSGNPIKVSFAT 99 (99)
T ss_dssp CBSSSSBCEEEECC
T ss_pred CEeCCcEEEEEecC
Confidence 99999999999874
No 42
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.80 E-value=2.3e-19 Score=140.56 Aligned_cols=84 Identities=26% Similarity=0.405 Sum_probs=79.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
.+..+.++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.|||..++|++|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcc
Q 024258 90 QFAK 93 (270)
Q Consensus 90 ~~a~ 93 (270)
++++
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9874
No 43
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.5e-19 Score=135.18 Aligned_cols=88 Identities=20% Similarity=0.295 Sum_probs=80.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
.......+.++|||+|||+++++++|+++|++||.|.+|++++++. .++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 84 (103)
T 2cqi_A 7 GMMEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRDAAAALAAMNGRKILGKE 84 (103)
T ss_dssp CCCCCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC--SSCCEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC--CCCCEEEEEECCHHHHHHHHHHhCCCCcCCCe
Confidence 3455667789999999999999999999999999999999999854 37899999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|++++++.
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2cqi_A 85 VKVNWATTPS 94 (103)
T ss_dssp EEEEECCCTT
T ss_pred EEEEECCCCc
Confidence 9999998544
No 44
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.4e-19 Score=134.78 Aligned_cols=90 Identities=33% Similarity=0.552 Sum_probs=81.5
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 5 GRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 5 ~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
+...+....+.++|||+|||+++++++|+++|++||.|.+|++++++. .++|||||+|.+.++|++|++.||+..++|
T Consensus 5 ~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 5 SSGNSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp CCCCSCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT--TTCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC--CCcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344556677889999999999999999999999999999999998853 489999999999999999999999999999
Q ss_pred cEEEEEEcccCC
Q 024258 85 REITVQFAKYGP 96 (270)
Q Consensus 85 r~I~V~~a~~~~ 96 (270)
+.|+|+++.++.
T Consensus 83 ~~l~v~~a~~~~ 94 (103)
T 2cq3_A 83 RKIEVNNATARV 94 (103)
T ss_dssp EECEEEECCSSC
T ss_pred EEEEEEEcccCC
Confidence 999999998654
No 45
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.9e-19 Score=138.28 Aligned_cols=89 Identities=28% Similarity=0.445 Sum_probs=82.8
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
.......+.++|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|++|++. |+..+.|+.
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~ 86 (105)
T 2dh8_A 8 MNNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRN 86 (105)
T ss_dssp CCCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEE
T ss_pred CCcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEE
Confidence 3455667889999999999999999999999999999999999999999999999999999999999998 999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++.++.
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 9999998544
No 46
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=140.22 Aligned_cols=86 Identities=21% Similarity=0.284 Sum_probs=79.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCe-EEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKV-VDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I-~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.....+.++|||+|||+++++++|+++|++||.| .+|++++|+ +|+++|||||+|.+.++|++|++. |+..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 9 GDVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CSCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 3455678999999999999999999999999999 899999998 999999999999999999999996 9999999999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|.++.++.
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2cpy_A 87 FVHVVTLED 95 (114)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999997543
No 47
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.79 E-value=2.9e-20 Score=139.31 Aligned_cols=81 Identities=27% Similarity=0.381 Sum_probs=73.0
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYG--KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
.+|||+|||+++++++|+++|++|| .|.+++++.++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999998
Q ss_pred cCC
Q 024258 94 YGP 96 (270)
Q Consensus 94 ~~~ 96 (270)
+++
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 654
No 48
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.6e-19 Score=135.84 Aligned_cols=85 Identities=22% Similarity=0.389 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeE-EEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE---
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVV-DIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE--- 86 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~-~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~--- 86 (270)
...+.++|||+|||+++++++|+++|++||.|. ++++++++.+++++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 344678999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -EEEEEcccC
Q 024258 87 -ITVQFAKYG 95 (270)
Q Consensus 87 -I~V~~a~~~ 95 (270)
|+|+++++.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999999854
No 49
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2e-19 Score=136.26 Aligned_cols=88 Identities=20% Similarity=0.302 Sum_probs=80.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
........++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l 87 (98)
T 2cqp_A 8 ASSGKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKV 87 (98)
T ss_dssp CCCCCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEE
Confidence 33455567899999999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred EEEEcccC
Q 024258 88 TVQFAKYG 95 (270)
Q Consensus 88 ~V~~a~~~ 95 (270)
+|+++..+
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99998743
No 50
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.79 E-value=2.4e-19 Score=140.56 Aligned_cols=81 Identities=19% Similarity=0.458 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
..++|||+|||+++++++|+++|++||.|.+|++++++ +.+||||||+|.+.++|++|++.|||..++|+.|+|+++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC--CCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 45689999999999999999999999999999999985 4589999999999999999999999999999999999988
Q ss_pred cCC
Q 024258 94 YGP 96 (270)
Q Consensus 94 ~~~ 96 (270)
++.
T Consensus 82 ~~~ 84 (115)
T 4f25_A 82 SRK 84 (115)
T ss_dssp CCC
T ss_pred Ccc
Confidence 544
No 51
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.79 E-value=2.5e-19 Score=134.80 Aligned_cols=86 Identities=27% Similarity=0.408 Sum_probs=78.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
..+....+.++|||+|||+++++++|+++|++||.|.++++.+++. ++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 8 ~~~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 86 (95)
T 2ywk_A 8 MFPAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRP 86 (95)
T ss_dssp ----CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCE
Confidence 3455666789999999999999999999999999999999999975 999999999999999999999999999999999
Q ss_pred EEEEEcc
Q 024258 87 ITVQFAK 93 (270)
Q Consensus 87 I~V~~a~ 93 (270)
|+|++++
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9999986
No 52
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.79 E-value=2.4e-19 Score=139.26 Aligned_cols=89 Identities=26% Similarity=0.447 Sum_probs=83.1
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+....+.++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 19 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l 98 (108)
T 2jrs_A 19 LQKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPM 98 (108)
T ss_dssp SCCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred cccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|++++++.
T Consensus 99 ~V~~a~~k~ 107 (108)
T 2jrs_A 99 KVGHVTERT 107 (108)
T ss_dssp EEECSCSSC
T ss_pred EEEEcccCC
Confidence 999998543
No 53
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.2e-19 Score=133.91 Aligned_cols=88 Identities=27% Similarity=0.514 Sum_probs=81.0
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
..+....+.++|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|++|++ +++.++|+.
T Consensus 7 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~ 84 (103)
T 2cqg_A 7 GVKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW 84 (103)
T ss_dssp SCSCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE
T ss_pred CCCCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE
Confidence 345566778999999999999999999999999999999999999999999999999999999999998 578999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++.++.
T Consensus 85 l~v~~a~~~~ 94 (103)
T 2cqg_A 85 CDCKLPNSKQ 94 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEEecCCCC
Confidence 9999998654
No 54
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=134.98 Aligned_cols=87 Identities=28% Similarity=0.397 Sum_probs=78.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
..+....+.++|||+|||+++++++|+++|++||.|.++.+..+ ++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 14 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 90 (109)
T 1x4a_A 14 IRGPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR---RGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYR 90 (109)
T ss_dssp SSCCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS---SSSSCCEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeE
Confidence 34456667899999999999999999999999999999999654 568999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|++++++.
T Consensus 91 l~V~~a~~~~ 100 (109)
T 1x4a_A 91 LRVEFPRSGR 100 (109)
T ss_dssp CEEECCCCCC
T ss_pred EEEEEcccCC
Confidence 9999998544
No 55
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.78 E-value=1.4e-19 Score=145.02 Aligned_cols=88 Identities=25% Similarity=0.447 Sum_probs=81.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE--EEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe----e
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVD--IFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR----V 81 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~--v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~----~ 81 (270)
.+......++|||+|||+++++++|+++|++||.|.. |++++|+.+|++||||||+|.+. +|++|++.|||. .
T Consensus 16 ~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 16 EPSSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp CCCCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 3455567889999999999999999999999999976 99999999999999999999999 999999999999 9
Q ss_pred EeccEEEEEEcccCC
Q 024258 82 VDGREITVQFAKYGP 96 (270)
Q Consensus 82 l~Gr~I~V~~a~~~~ 96 (270)
++|+.|+|++++++.
T Consensus 95 ~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 95 IDGKTINVEFAKGSK 109 (131)
T ss_dssp GGGCCCCCEECCCSC
T ss_pred CCCEEEEEEECCCCC
Confidence 999999999998543
No 56
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.1e-19 Score=135.24 Aligned_cols=84 Identities=32% Similarity=0.554 Sum_probs=78.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCC---CCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRR---TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~---tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
.+.++|||+|||+++++++|+++|++||.|.++.+.+++. +++++|||||+|.+.++|++|++.||+..++|+.|+|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4678999999999999999999999999999999999876 6699999999999999999999999999999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
++++++.
T Consensus 83 ~~a~~~~ 89 (98)
T 2cpf_A 83 RISERAT 89 (98)
T ss_dssp ECSSCSS
T ss_pred EEccCCC
Confidence 9998544
No 57
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.78 E-value=6.8e-19 Score=135.41 Aligned_cols=85 Identities=29% Similarity=0.492 Sum_probs=79.5
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+....+.++|||+|||+++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 100 (107)
T 3ulh_A 22 GGAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPM 100 (107)
T ss_dssp --CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEE
Confidence 34566778999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred EEEEcc
Q 024258 88 TVQFAK 93 (270)
Q Consensus 88 ~V~~a~ 93 (270)
+|+++.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 999975
No 58
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.8e-20 Score=139.31 Aligned_cols=90 Identities=31% Similarity=0.481 Sum_probs=83.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
+...+.++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 3 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 82 (104)
T 1p1t_A 3 AVDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRV 82 (104)
T ss_dssp CSHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEE
T ss_pred CcCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCCchh
Q 024258 90 QFAKYGPNAE 99 (270)
Q Consensus 90 ~~a~~~~~~~ 99 (270)
+++.++....
T Consensus 83 ~~a~~~~~~~ 92 (104)
T 1p1t_A 83 DNAASEKNKE 92 (104)
T ss_dssp EETTCTTHHH
T ss_pred EeCCCccchh
Confidence 9998665443
No 59
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=3.6e-19 Score=136.31 Aligned_cols=87 Identities=24% Similarity=0.355 Sum_probs=81.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhcc-CCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCee-EeccE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDK-YGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV-VDGRE 86 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~-~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~-l~Gr~ 86 (270)
.++..+.++|||+|||+++++++|+++|++ ||.|.++++++++ +++++|||||+|.+.++|++|++.||+.. +.|+.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~ 81 (104)
T 2dhg_A 3 SGSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKP 81 (104)
T ss_dssp CCCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEe
Confidence 345567789999999999999999999999 9999999999998 99999999999999999999999999999 99999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++.++.
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 9999997544
No 60
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.3e-18 Score=132.39 Aligned_cols=85 Identities=21% Similarity=0.255 Sum_probs=77.4
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 5 GRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 5 ~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
+...++.....++|||+|||+++++++|+++|++||.|.+|.++.+ |||||+|.+.++|++|++.||+..+.|
T Consensus 5 ~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 5 SSGGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CCSSCCCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 3445666678899999999999999999999999999999999876 899999999999999999999999999
Q ss_pred -----cEEEEEEcccCC
Q 024258 85 -----REITVQFAKYGP 96 (270)
Q Consensus 85 -----r~I~V~~a~~~~ 96 (270)
+.|+|+++.++.
T Consensus 78 ~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 78 HEGETAYIRVKVDGPRS 94 (108)
T ss_dssp TTSCEEEEEEEESSCCS
T ss_pred CcCcceEEEEEeCCCCC
Confidence 999999998643
No 61
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=130.11 Aligned_cols=85 Identities=25% Similarity=0.397 Sum_probs=79.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.....+.++|||+|||+++++++|+++|++| .|.+++++++ .+|+++|||||+|.+.++|++|++ ||+..++|+.|+
T Consensus 4 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~ 80 (91)
T 2dgw_A 4 GSSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIE 80 (91)
T ss_dssp CCCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEE
T ss_pred CCCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEE
Confidence 3445677899999999999999999999999 9999999999 799999999999999999999999 999999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|.++.+++
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99998654
No 62
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.78 E-value=7e-20 Score=140.22 Aligned_cols=83 Identities=27% Similarity=0.387 Sum_probs=79.0
Q ss_pred CCCcEEEEcCCCC------CCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec-c
Q 024258 13 TDTYSLLVLNITF------RTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG-R 85 (270)
Q Consensus 13 ~~~~~lfVgnLp~------~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G-r 85 (270)
...++|||+|||+ ++++++|+++|++||.|.++++++++.||+++|||||+|.+.++|++|++.|||..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 3468999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred EEEEEEcccC
Q 024258 86 EITVQFAKYG 95 (270)
Q Consensus 86 ~I~V~~a~~~ 95 (270)
.|+|+++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999999853
No 63
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.78 E-value=5.1e-19 Score=130.96 Aligned_cols=83 Identities=31% Similarity=0.515 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCC-cccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGD-SRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~-skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
+.++|||+|||+++++++|+++|++||.|.++.++.++.++. ++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 568999999999999999999999999999999999987766 9999999999999999999999999999999999999
Q ss_pred ccCC
Q 024258 93 KYGP 96 (270)
Q Consensus 93 ~~~~ 96 (270)
.++.
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7543
No 64
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.78 E-value=1.9e-19 Score=135.52 Aligned_cols=83 Identities=22% Similarity=0.318 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
.....++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.||+..+.|++|+|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~ 90 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLS 90 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 34456899999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
++.
T Consensus 91 ~a~ 93 (95)
T 2ek1_A 91 GPS 93 (95)
T ss_dssp CCC
T ss_pred ecc
Confidence 876
No 65
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.78 E-value=4e-19 Score=142.51 Aligned_cols=88 Identities=35% Similarity=0.570 Sum_probs=82.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
+....+.++|||+|||+++++++|+++|++||.|.+|++++++.+++++|||||+|.+.++|++|++.|||..++|++|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|+++.+++
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99998543
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.2e-18 Score=132.10 Aligned_cols=83 Identities=22% Similarity=0.254 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 11 DITDTYSLLVLNITFRTTADDLF----PLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
...+.++|||+|||+++++++|+ ++|++||.|.+|+++.++.+ +|||||+|.+.++|++|++.|||..+.|++
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~---rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~ 81 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY---QLKAVVQMENLQDAIGAVNSLHRYKIGSKK 81 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST---TCCEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC---CeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 34467899999999999999999 99999999999999998765 899999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++++.+
T Consensus 82 l~V~~a~~~~ 91 (96)
T 2dgx_A 82 ILVSLATGAS 91 (96)
T ss_dssp EEEEECCCSS
T ss_pred EEEEEcCCCC
Confidence 9999998544
No 67
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=131.70 Aligned_cols=85 Identities=21% Similarity=0.477 Sum_probs=76.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+....+.++|||+|||+++++++|+++|++||.| +++.+ .+++++|||||+|.+.++|++|++.||+..+.|+.|
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 83 (101)
T 2fc9_A 8 NSTWSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAI 83 (101)
T ss_dssp CCCCSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEE
T ss_pred CccCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEE
Confidence 34566678999999999999999999999999977 56666 689999999999999999999999999999999999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|++++++.
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999998653
No 68
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.77 E-value=1.3e-18 Score=142.99 Aligned_cols=87 Identities=26% Similarity=0.450 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCCc
Q 024258 91 FAKYGPN 97 (270)
Q Consensus 91 ~a~~~~~ 97 (270)
++.+...
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9986443
No 69
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.77 E-value=1.1e-18 Score=129.53 Aligned_cols=81 Identities=27% Similarity=0.478 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.++|||+|||+++++++|+++|++||.|.++++.+++.+++++|||||+|.+.++|++|+ .|||..+.|+.|+|++++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 4579999999999999999999999999999999999999999999999999999999999 899999999999999987
Q ss_pred cC
Q 024258 94 YG 95 (270)
Q Consensus 94 ~~ 95 (270)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 53
No 70
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1e-18 Score=136.01 Aligned_cols=89 Identities=19% Similarity=0.388 Sum_probs=80.8
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHH---HhhccCCCeEEEEEcccCCCC---CcccEEEEEEcCHHHHHHHHHhcCCee
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLF---PLFDKYGKVVDIFIPRDRRTG---DSRGFAFVRYKYADEAQKAVDRLDGRV 81 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~---~~F~~~G~I~~v~i~~d~~tg---~skG~aFV~F~s~e~A~~Al~~Lng~~ 81 (270)
......+.++|||+|||+++++++|+ ++|++||.|.++.+.+++.++ +++|||||+|.+.++|++|++.|||..
T Consensus 8 ~~~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~ 87 (111)
T 2cpi_A 8 ASVRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVV 87 (111)
T ss_dssp SCCCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEE
T ss_pred ccccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCE
Confidence 34566678899999999999999999 999999999999999987754 566999999999999999999999999
Q ss_pred EeccEEEEEEcccCC
Q 024258 82 VDGREITVQFAKYGP 96 (270)
Q Consensus 82 l~Gr~I~V~~a~~~~ 96 (270)
++|+.|+|+++.+++
T Consensus 88 ~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 88 VDGRTLKASLGTTKY 102 (111)
T ss_dssp ETTEEEEEESCCCCS
T ss_pred ECCEEEEEEeccccc
Confidence 999999999998654
No 71
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.77 E-value=1.3e-18 Score=135.33 Aligned_cols=86 Identities=22% Similarity=0.347 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
....+.++|||+|||+++++++|+++|++||.|.+|++++++.+|+++|||||+|.+.++|++|++.+ +..++|+.|+|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 34557899999999999999999999999999999999999999999999999999999999999975 59999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
+++.++.
T Consensus 99 ~~a~~~~ 105 (109)
T 2rs2_A 99 KVAFPRR 105 (109)
T ss_dssp EECCCCC
T ss_pred EEccCCC
Confidence 9998654
No 72
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.5e-19 Score=136.35 Aligned_cols=82 Identities=28% Similarity=0.410 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.++|||+|||+++++++|+++|++||.|.+|.++.++.+++++|||||+|.+.++|++|+ .||+..+.|+.|+|+++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 3579999999999999999999999999999999999999999999999999999999999 899999999999999998
Q ss_pred cCC
Q 024258 94 YGP 96 (270)
Q Consensus 94 ~~~ 96 (270)
++.
T Consensus 103 ~~~ 105 (114)
T 2cq4_A 103 AEK 105 (114)
T ss_dssp HHH
T ss_pred CCc
Confidence 543
No 73
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.77 E-value=2.3e-18 Score=140.41 Aligned_cols=125 Identities=24% Similarity=0.354 Sum_probs=99.5
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEccc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKY 94 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~ 94 (270)
.++|||+|||+++++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999986
Q ss_pred CCchhhhccc---------------------------cccCCCCCCCCcceEEEcCCchHHHHHHHH-hCCcE
Q 024258 95 GPNAERIKEG---------------------------LLNHSRDRSTGQGVAVLGEDTEMITEIEII-EGGVT 139 (270)
Q Consensus 95 ~~~~~~~~~~---------------------------~~~~~~~~~~~rg~~~v~~~~~~~~~~~~~-~~G~~ 139 (270)
.........- ........+.++|++|+.|.+......... ++|+.
T Consensus 82 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 154 (167)
T 1fxl_A 82 SSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQK 154 (167)
T ss_dssp CCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCC
T ss_pred CcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCc
Confidence 5432211100 111223355678899999985544443333 66654
No 74
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.77 E-value=1.8e-18 Score=141.56 Aligned_cols=127 Identities=24% Similarity=0.327 Sum_probs=99.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|++|++.|+|..+.|++|+|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCchhhhccc---------------------------cccCCCCCCCCcceEEEcCCchHHHHHHHH-hCCcEE
Q 024258 94 YGPNAERIKEG---------------------------LLNHSRDRSTGQGVAVLGEDTEMITEIEII-EGGVTV 140 (270)
Q Consensus 94 ~~~~~~~~~~~---------------------------~~~~~~~~~~~rg~~~v~~~~~~~~~~~~~-~~G~~~ 140 (270)
++........- ........+.++|++|+.|.+......... ++|+.+
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 54432211100 111223355668899999885443333333 566543
No 75
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=138.67 Aligned_cols=84 Identities=32% Similarity=0.475 Sum_probs=78.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.....+.++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 57 ~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 136 (140)
T 2ku7_A 57 GGSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIR 136 (140)
T ss_dssp CSSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEE
T ss_pred CCCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEc
Q 024258 89 VQFA 92 (270)
Q Consensus 89 V~~a 92 (270)
|++|
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9875
No 76
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.77 E-value=1.3e-18 Score=144.59 Aligned_cols=90 Identities=30% Similarity=0.503 Sum_probs=82.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+....+.++|||+|||+++++++|+.+|++||.|.+|.++.++.+|+++|||||+|.+.++|++|++.|||..+.|+.|
T Consensus 65 ~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 65 GPQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp -CCCCC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcccCCc
Q 024258 88 TVQFAKYGPN 97 (270)
Q Consensus 88 ~V~~a~~~~~ 97 (270)
.|.++.++..
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999986553
No 77
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.77 E-value=1.3e-18 Score=142.55 Aligned_cols=133 Identities=22% Similarity=0.354 Sum_probs=101.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.++|||+|||+++++++|+++|++||.|.++++++++.+|+++|||||+|.+.++|++|++ ++..++|+.|.|.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 57899999999999999999999999999999999999999999999999999999999999 4678899999888876
Q ss_pred cCCchhhhc---------------------------cccccCCCCCCCCcceEEEcCCchHHHHHHHH-----hCCcEEE
Q 024258 94 YGPNAERIK---------------------------EGLLNHSRDRSTGQGVAVLGEDTEMITEIEII-----EGGVTVE 141 (270)
Q Consensus 94 ~~~~~~~~~---------------------------~~~~~~~~~~~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~ 141 (270)
++....... ..........+.++|++|+.|.+......... ++|+.+.
T Consensus 80 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~i~ 159 (167)
T 2cjk_A 80 PRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQNKFIDFKDRKIE 159 (167)
T ss_dssp CHHHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHHCSEECSSSSCEE
T ss_pred chhhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHhCCCEEeCCeEEE
Confidence 322111100 00122233456788999999985555444443 5566666
Q ss_pred ecccccc
Q 024258 142 AGIGTNV 148 (270)
Q Consensus 142 v~~~~~~ 148 (270)
+..+.++
T Consensus 160 V~~a~pk 166 (167)
T 2cjk_A 160 IKRAEPR 166 (167)
T ss_dssp EEECCCC
T ss_pred EeecCCC
Confidence 6655443
No 78
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=9.4e-19 Score=130.90 Aligned_cols=86 Identities=24% Similarity=0.412 Sum_probs=79.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
+....+.++|||+|||+++++++|+++|++||.|.++++.++ +++++|||||+|.+.++|++|++.||+..+.|+.|+
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~ 79 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREID 79 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 344567899999999999999999999999999999999874 889999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|+++++..
T Consensus 80 v~~a~~~~ 87 (92)
T 2dgv_A 80 VRIDRNAS 87 (92)
T ss_dssp CEECSCCS
T ss_pred EEEcCCCC
Confidence 99998543
No 79
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.77 E-value=2.8e-18 Score=135.78 Aligned_cols=85 Identities=28% Similarity=0.455 Sum_probs=80.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
+...+.++|||+|||+++++++|+++|++||.|.++++..++ +|+++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 30 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 108 (124)
T 2kt5_A 30 EGVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDI 108 (124)
T ss_dssp CCCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 455677899999999999999999999999999999999998 9999999999999999999999999999999999999
Q ss_pred EEcccC
Q 024258 90 QFAKYG 95 (270)
Q Consensus 90 ~~a~~~ 95 (270)
+++.+.
T Consensus 109 ~~a~~~ 114 (124)
T 2kt5_A 109 QLVASQ 114 (124)
T ss_dssp EEECCT
T ss_pred EEeCCC
Confidence 999854
No 80
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2e-18 Score=132.82 Aligned_cols=85 Identities=21% Similarity=0.353 Sum_probs=78.2
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVD-IFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~-v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
..+...+.++|||+|||+++++++|+++|++||.|.+ +.++.+ .+|+++|||||+|.+.++|++|++. |+..++|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~ 85 (104)
T 1wg5_A 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY 85 (104)
T ss_dssp CCSSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE
Confidence 3455567899999999999999999999999999987 899988 7999999999999999999999997 999999999
Q ss_pred EEEEEccc
Q 024258 87 ITVQFAKY 94 (270)
Q Consensus 87 I~V~~a~~ 94 (270)
|+|.++..
T Consensus 86 i~v~~~~~ 93 (104)
T 1wg5_A 86 IEIFKSSR 93 (104)
T ss_dssp CEEEEECT
T ss_pred EEEEECCH
Confidence 99999864
No 81
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.77 E-value=2e-18 Score=141.75 Aligned_cols=87 Identities=52% Similarity=0.880 Sum_probs=81.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
......++|||+|||+++++++|+++|++||.|.++++++|+.+|+++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 65 ~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 144 (158)
T 2kn4_A 65 MDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRV 144 (158)
T ss_dssp CCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
++++++.
T Consensus 145 ~~a~~~~ 151 (158)
T 2kn4_A 145 QMARYGR 151 (158)
T ss_dssp EEECCSS
T ss_pred EECCCCC
Confidence 9998543
No 82
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.77 E-value=1.4e-18 Score=137.03 Aligned_cols=84 Identities=19% Similarity=0.282 Sum_probs=78.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGK---VVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr 85 (270)
.++..+.++|||+|||+++++++|+++|++||. |.+|++++++. |+++|||||+|.+.++|++|++ +|+..++|+
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 345667899999999999999999999999999 89999999976 9999999999999999999999 999999999
Q ss_pred EEEEEEccc
Q 024258 86 EITVQFAKY 94 (270)
Q Consensus 86 ~I~V~~a~~ 94 (270)
.|+|.++..
T Consensus 89 ~i~V~~a~~ 97 (118)
T 2db1_A 89 YIEVFKSHR 97 (118)
T ss_dssp EEEEEEECH
T ss_pred EEEEEECCH
Confidence 999999864
No 83
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2e-18 Score=133.21 Aligned_cols=86 Identities=22% Similarity=0.305 Sum_probs=79.4
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEc-ccCCCCCcccEEEEEEcCHHHHHHHHHhcC--CeeEeccEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGK-VVDIFIP-RDRRTGDSRGFAFVRYKYADEAQKAVDRLD--GRVVDGREI 87 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~-I~~v~i~-~d~~tg~skG~aFV~F~s~e~A~~Al~~Ln--g~~l~Gr~I 87 (270)
..+.++|||+|||+++++++|+++|++||. |.++.++ .++.+|+++|||||+|.+.++|++|++.|| +..+.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 346789999999999999999999999998 9999998 888899999999999999999999999996 589999999
Q ss_pred EEEEcccCCc
Q 024258 88 TVQFAKYGPN 97 (270)
Q Consensus 88 ~V~~a~~~~~ 97 (270)
+|++++++..
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999986554
No 84
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=5.2e-19 Score=135.09 Aligned_cols=85 Identities=18% Similarity=0.375 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccC-CCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDR-RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~-~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
+......++|||+|||+++++++|+++|++|| |.++++++++ .+|+++|||||+|.+.++|++|+ .|||..++|+.|
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l 90 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRI 90 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEE
Confidence 44566789999999999999999999999999 9999999998 69999999999999999999999 799999999999
Q ss_pred EEEEcccC
Q 024258 88 TVQFAKYG 95 (270)
Q Consensus 88 ~V~~a~~~ 95 (270)
+|++++++
T Consensus 91 ~V~~a~~~ 98 (100)
T 2j76_E 91 RVDVADQA 98 (100)
T ss_dssp CCEECCCS
T ss_pred EEEeccCC
Confidence 99999854
No 85
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=136.63 Aligned_cols=82 Identities=27% Similarity=0.454 Sum_probs=78.0
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.++|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|++|++. ++..++|+.|+|+++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999999999999999999999999999999997 9999999999999998
Q ss_pred cCC
Q 024258 94 YGP 96 (270)
Q Consensus 94 ~~~ 96 (270)
++.
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 654
No 86
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=143.82 Aligned_cols=82 Identities=24% Similarity=0.420 Sum_probs=77.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYG--KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
+.++|||+|||+++++++|+++|++|| .|.+|+++.|+.+|+++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 458999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 024258 92 AKYG 95 (270)
Q Consensus 92 a~~~ 95 (270)
+.++
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 9753
No 87
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.4e-18 Score=131.22 Aligned_cols=87 Identities=28% Similarity=0.413 Sum_probs=78.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
.+.....+.++|||+|||+++++++|+++|+.|+ ++.++.++.+++++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 83 (102)
T 2fc8_A 7 GPNARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNK 83 (102)
T ss_dssp TTSSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 3445667789999999999999999999999874 6788888889999999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|++++++.
T Consensus 84 l~V~~a~~~~ 93 (102)
T 2fc8_A 84 VTLDWAKPKG 93 (102)
T ss_dssp CEEEECCCCC
T ss_pred EEEEEecCCC
Confidence 9999998654
No 88
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.2e-19 Score=131.73 Aligned_cols=81 Identities=27% Similarity=0.372 Sum_probs=76.8
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.+.++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.|||..+.|+.++++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999888765
Q ss_pred c
Q 024258 93 K 93 (270)
Q Consensus 93 ~ 93 (270)
+
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 89
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.76 E-value=5.7e-19 Score=142.60 Aligned_cols=88 Identities=53% Similarity=0.936 Sum_probs=82.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
+++..+.++|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 41 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 120 (135)
T 2lea_A 41 PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELR 120 (135)
T ss_dssp CSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 45556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|++++++.
T Consensus 121 V~~a~~~~ 128 (135)
T 2lea_A 121 VQMARYGR 128 (135)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 99998654
No 90
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.76 E-value=5.3e-18 Score=129.90 Aligned_cols=85 Identities=26% Similarity=0.452 Sum_probs=76.2
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc
Q 024258 6 RSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (270)
Q Consensus 6 ~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr 85 (270)
.+.+....+.++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.||+..+.|+
T Consensus 2 s~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--------~~~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (103)
T 2dgu_A 2 SSGSSGMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--------KDYAFIHFDERDGAVKAMEEMNGKDLEGE 73 (103)
T ss_dssp CCCCCCCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--------SSCEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEeCCHHHHHHHHHHHCCCccCCC
Confidence 3445566678999999999999999999999999999999986 45999999999999999999999999999
Q ss_pred EEEEEEcccCCch
Q 024258 86 EITVQFAKYGPNA 98 (270)
Q Consensus 86 ~I~V~~a~~~~~~ 98 (270)
.|+|++++++...
T Consensus 74 ~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 74 NIEIVFAKPPDQK 86 (103)
T ss_dssp EEEEEECCCCCCC
T ss_pred EEEEEEcCCCccc
Confidence 9999999865543
No 91
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.8e-18 Score=133.63 Aligned_cols=82 Identities=20% Similarity=0.308 Sum_probs=77.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++|||+|||+++++++|+++|++||.|.+|.+++++. |+++|||||+|.+.++|++|++ +++..++|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 445678999999999999999999999999999999999987 9999999999999999999999 89999999999999
Q ss_pred Eccc
Q 024258 91 FAKY 94 (270)
Q Consensus 91 ~a~~ 94 (270)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 9873
No 92
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.5e-18 Score=138.49 Aligned_cols=123 Identities=18% Similarity=0.228 Sum_probs=94.9
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccC
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~ 95 (270)
++|||+|||+++++++|+++|++||.|.++++.+++ +++++|||||+|.+.++|++|++.|||..+.|+.|.|.++.+.
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK-NNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC-C-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC-CCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999996 5889999999999999999999999999999999999998754
Q ss_pred Cchhhhccc-----------------------------cccCCCCCCCCcceEEEcCCchHHHHHHHH-hCCcE
Q 024258 96 PNAERIKEG-----------------------------LLNHSRDRSTGQGVAVLGEDTEMITEIEII-EGGVT 139 (270)
Q Consensus 96 ~~~~~~~~~-----------------------------~~~~~~~~~~~rg~~~v~~~~~~~~~~~~~-~~G~~ 139 (270)
......... ........+.++|++|+.|.+......... ++|..
T Consensus 80 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~ 153 (166)
T 3md3_A 80 QQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD 153 (166)
T ss_dssp CCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCE
T ss_pred CCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCc
Confidence 322111100 112223456778899999985444443333 45543
No 93
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.75 E-value=7.5e-19 Score=126.69 Aligned_cols=75 Identities=25% Similarity=0.480 Sum_probs=72.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 17 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
+|||+|||+++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|++|++ +|+..++|++|+|+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999999999999999999999899999999999999999999998 9999999999999875
No 94
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=8e-18 Score=129.71 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhc--CCeeE
Q 024258 5 GRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL--DGRVV 82 (270)
Q Consensus 5 ~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~L--ng~~l 82 (270)
+........+.++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|.+.++|++|++.| ++..+
T Consensus 5 s~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~ 78 (101)
T 2cq1_A 5 SSGDKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG------KNQAFLELATEEAAITMVNYYSAVTPHL 78 (101)
T ss_dssp CCCCCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCEE
T ss_pred CCCCCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3334556667899999999999999999999999999999998765 899999999999999999976 56789
Q ss_pred eccEEEEEEcccCC
Q 024258 83 DGREITVQFAKYGP 96 (270)
Q Consensus 83 ~Gr~I~V~~a~~~~ 96 (270)
.|++|+|++++++.
T Consensus 79 ~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 79 RNQPIYIQYSNHKE 92 (101)
T ss_dssp TTEECEEEECSCSS
T ss_pred CCcEEEEEEcCccc
Confidence 99999999998543
No 95
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=131.89 Aligned_cols=84 Identities=17% Similarity=0.252 Sum_probs=76.7
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.......++|||+|||+++++++|+++|++||. .+|++++++ +++++|||||+|.+.++|++|++ +|+..+.|+.|+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (102)
T 1wez_A 9 SFQSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGP-DGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVE 85 (102)
T ss_dssp SCCCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESS-SSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECC-CCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEE
Confidence 445667889999999999999999999999995 499999997 89999999999999999999996 799999999999
Q ss_pred EEEcccC
Q 024258 89 VQFAKYG 95 (270)
Q Consensus 89 V~~a~~~ 95 (270)
|.++...
T Consensus 86 V~~~~~~ 92 (102)
T 1wez_A 86 LFLNSTA 92 (102)
T ss_dssp EEEECCC
T ss_pred EEECCCC
Confidence 9988743
No 96
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.75 E-value=3.1e-18 Score=135.18 Aligned_cols=81 Identities=30% Similarity=0.475 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.++|||+|||+++++++|+++|++||.|.+|.+++++.+|+++|||||+|.+.++|++|+ .|||..++|+.|+|++++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999999999999999999999999999999 699999999999999988
Q ss_pred cC
Q 024258 94 YG 95 (270)
Q Consensus 94 ~~ 95 (270)
+.
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 97
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.75 E-value=6.2e-18 Score=144.01 Aligned_cols=83 Identities=25% Similarity=0.371 Sum_probs=75.6
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.++|||+|||+++++++|+++|++||.|.++++++++.+++++|||||+|.+.++|++|++.||+..+.|+.|+|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999999999899999999999999999999999999999999999999876
Q ss_pred cCC
Q 024258 94 YGP 96 (270)
Q Consensus 94 ~~~ 96 (270)
...
T Consensus 107 ~~~ 109 (216)
T 2qfj_A 107 NIG 109 (216)
T ss_dssp CCG
T ss_pred Ccc
Confidence 443
No 98
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.75 E-value=5.1e-19 Score=131.99 Aligned_cols=80 Identities=29% Similarity=0.477 Sum_probs=74.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccC
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~ 95 (270)
++|||+|||+++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.+ |++|++.|||..++|+.|+|+++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999854
Q ss_pred C
Q 024258 96 P 96 (270)
Q Consensus 96 ~ 96 (270)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 99
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=3e-18 Score=132.47 Aligned_cols=83 Identities=17% Similarity=0.278 Sum_probs=73.9
Q ss_pred CCCCCCCCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe--eEe
Q 024258 7 SGPPDITDTYSLLVLNITF-RTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR--VVD 83 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~--~l~ 83 (270)
+......+.++|||+|||+ ++++++|+++|++||.|.++.++++ +|||||+|.+.++|++|++.||+. .+.
T Consensus 7 ~~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~~~ 80 (102)
T 1x4d_A 7 GQKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK------INEAFIEMATTEDAQAAVDYYTTTPALVF 80 (102)
T ss_dssp CCCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS------SSCEEEEESSHHHHHHHHHHHHHSCCEET
T ss_pred CCCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHHcCCCceEC
Confidence 3344556789999999999 9999999999999999999999876 589999999999999999998864 599
Q ss_pred ccEEEEEEcccC
Q 024258 84 GREITVQFAKYG 95 (270)
Q Consensus 84 Gr~I~V~~a~~~ 95 (270)
|++|+|++++..
T Consensus 81 Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 81 GKPVRVHLSQKY 92 (102)
T ss_dssp TEECEEEEECCC
T ss_pred CcEEEEEECCCC
Confidence 999999999843
No 100
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=8.3e-18 Score=130.85 Aligned_cols=85 Identities=20% Similarity=0.452 Sum_probs=78.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE-------
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV------- 82 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l------- 82 (270)
....+.++|||+|||+++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|++|++.|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~ 98 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVS 98 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCcccc
Confidence 344577899999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred -eccEEEEEEcccC
Q 024258 83 -DGREITVQFAKYG 95 (270)
Q Consensus 83 -~Gr~I~V~~a~~~ 95 (270)
.+++|.|+++.++
T Consensus 99 ~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 99 APTEPLLCKFSGPS 112 (114)
T ss_dssp CCSSCBEEEECCCS
T ss_pred CCCCceeEEccCCC
Confidence 5788999998843
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=5.1e-18 Score=130.78 Aligned_cols=83 Identities=23% Similarity=0.394 Sum_probs=76.3
Q ss_pred CCCCCCcEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe
Q 024258 10 PDITDTYSLLVLNITFRT------TADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~------te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~ 83 (270)
......++|||+|||+.+ ++++|+++|++||.|.++.++ +.+|+++|||||+|.+.++|++|++.|||..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 344557899999999999 789999999999999999988 468999999999999999999999999999999
Q ss_pred cc-EEEEEEccc
Q 024258 84 GR-EITVQFAKY 94 (270)
Q Consensus 84 Gr-~I~V~~a~~ 94 (270)
|+ .|+|+++..
T Consensus 88 g~~~l~V~~a~~ 99 (105)
T 2nlw_A 88 KQHTFRVNLFTD 99 (105)
T ss_dssp TTCEEEEECSCC
T ss_pred CCceEEEEEcch
Confidence 98 999999874
No 102
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1e-18 Score=126.35 Aligned_cols=76 Identities=25% Similarity=0.465 Sum_probs=73.4
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
++|||+|||+++++++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|++|++.++ ..++|+.|+|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 579999999999999999999999999999999999999999999999999999999999988 9999999999986
No 103
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=4.9e-18 Score=129.06 Aligned_cols=88 Identities=31% Similarity=0.491 Sum_probs=78.8
Q ss_pred CCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE
Q 024258 3 HFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (270)
Q Consensus 3 ~~~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l 82 (270)
+.+.+......+.++|||+|||+++++++|+++|++||.|.++.+.++ +|||||+|.+.++|++|++.|||..+
T Consensus 3 ~~s~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~------kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 3 SGSSGGEKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD------KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp CCSSCCSCCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT------TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred CCCCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC------CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 344455566778899999999999999999999999999999999754 79999999999999999999999999
Q ss_pred eccEEEEEEcccCC
Q 024258 83 DGREITVQFAKYGP 96 (270)
Q Consensus 83 ~Gr~I~V~~a~~~~ 96 (270)
.|++|+|++++++.
T Consensus 77 ~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 77 RGKQLRVRFACHSA 90 (99)
T ss_dssp TTBCCEEEESSCCS
T ss_pred CCceEEEEEcCCCC
Confidence 99999999998543
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=131.91 Aligned_cols=85 Identities=34% Similarity=0.574 Sum_probs=78.2
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.....+.++|||+|||+++++++|+++|++||.|.++++.+++ ++++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 100 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE--RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIE 100 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT--TBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC--CCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 3455678999999999999999999999999999999999885 45899999999999999999999999999999999
Q ss_pred EEEcccC
Q 024258 89 VQFAKYG 95 (270)
Q Consensus 89 V~~a~~~ 95 (270)
|++++++
T Consensus 101 V~~a~~~ 107 (109)
T 2err_A 101 VNNATAR 107 (109)
T ss_dssp EEECCCS
T ss_pred EEECCCC
Confidence 9999854
No 105
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=5.7e-18 Score=132.29 Aligned_cols=82 Identities=18% Similarity=0.293 Sum_probs=75.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
+...+.++|||+|||+++++++|+++|++| .|.+|.+++|+. |+++|||||+|.+.++|++|+ .+|+..++||.|.|
T Consensus 11 ~~~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V 87 (109)
T 2dnn_A 11 PINPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEV 87 (109)
T ss_dssp CCCHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEE
Confidence 444557899999999999999999999999 899999999975 999999999999999999999 59999999999999
Q ss_pred EEccc
Q 024258 90 QFAKY 94 (270)
Q Consensus 90 ~~a~~ 94 (270)
..+.+
T Consensus 88 ~~a~~ 92 (109)
T 2dnn_A 88 SPATE 92 (109)
T ss_dssp EECCH
T ss_pred EECCc
Confidence 88863
No 106
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.74 E-value=4.2e-18 Score=138.17 Aligned_cols=84 Identities=17% Similarity=0.256 Sum_probs=78.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGK---VVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr 85 (270)
.++..+.++|||+|||+++++++|+++|++||. |.+|++++|+. |+++|||||+|.+.++|++|++ +|+..++||
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr 115 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHR 115 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCE
Confidence 345667899999999999999999999999999 89999999976 9999999999999999999999 999999999
Q ss_pred EEEEEEccc
Q 024258 86 EITVQFAKY 94 (270)
Q Consensus 86 ~I~V~~a~~ 94 (270)
.|+|.++.+
T Consensus 116 ~i~V~~a~~ 124 (136)
T 2hgl_A 116 YIEVFKSHR 124 (136)
T ss_dssp EEEEEECCH
T ss_pred EEEEEECCh
Confidence 999999863
No 107
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5.4e-18 Score=135.95 Aligned_cols=87 Identities=22% Similarity=0.421 Sum_probs=77.3
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLF----PLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
++...+.++|||+|||+.+++++|+ ++|++||.|.+|.+. .+++++|||||+|.+.++|+.|++.|||..+.|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~---~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g 99 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD---LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG 99 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC---CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec---cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC
Confidence 4455678899999999999999876 699999999999875 368899999999999999999999999999999
Q ss_pred cEEEEEEcccCCch
Q 024258 85 REITVQFAKYGPNA 98 (270)
Q Consensus 85 r~I~V~~a~~~~~~ 98 (270)
+.|+|+|++.+...
T Consensus 100 r~l~V~~a~~~~~~ 113 (127)
T 2a3j_A 100 NPLVITFSETPQSQ 113 (127)
T ss_dssp SCCEEEECCCCCHH
T ss_pred CEEEEEEccCcchh
Confidence 99999999865443
No 108
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=123.15 Aligned_cols=81 Identities=20% Similarity=0.355 Sum_probs=74.5
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhc-CCeeEecc
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL-DGRVVDGR 85 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~L-ng~~l~Gr 85 (270)
..++...+.++|||+|||+++++++|+++|++||.|.++.+.++ +|||||+|.+.++|++|++.| ++..+.|+
T Consensus 4 ~~~~~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~------kg~afV~f~~~~~A~~a~~~l~~~~~~~g~ 77 (85)
T 2ytc_A 4 GSSGEDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR------QQCAFIQFATRQAAEVAAEKSFNKLIVNGR 77 (85)
T ss_dssp CCCCSCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHTTTTTCEETTE
T ss_pred CCCCCCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC------CCEEEEEECCHHHHHHHHHHhcCCeeECCC
Confidence 34556677899999999999999999999999999999999864 799999999999999999999 99999999
Q ss_pred EEEEEEcc
Q 024258 86 EITVQFAK 93 (270)
Q Consensus 86 ~I~V~~a~ 93 (270)
+|+|++++
T Consensus 78 ~l~v~~ak 85 (85)
T 2ytc_A 78 RLNVKWGR 85 (85)
T ss_dssp ECCEEECC
T ss_pred EEEEEecC
Confidence 99999974
No 109
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.1e-18 Score=132.41 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=72.7
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCC--eeEeccEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--RVVDGREIT 88 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng--~~l~Gr~I~ 88 (270)
...+.++|||+|||++++|++|+++|++||.|.+|+++++ ||||||+|.+.++|++|++.|++ ..+.|++|+
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~------kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~ 85 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIY 85 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhccCCceECCEEEE
Confidence 4456789999999999999999999999999999999876 79999999999999999998864 789999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|++++++.
T Consensus 86 V~~A~~~~ 93 (105)
T 1sjq_A 86 IQFSNHKE 93 (105)
T ss_dssp BCCCSSSS
T ss_pred EEEcCCCC
Confidence 99998543
No 110
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.4e-18 Score=130.21 Aligned_cols=86 Identities=13% Similarity=0.214 Sum_probs=75.3
Q ss_pred CCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe--eE
Q 024258 5 GRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR--VV 82 (270)
Q Consensus 5 ~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~--~l 82 (270)
+...+....+.++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|.+.++|++|++.|++. .+
T Consensus 5 ~~~~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~------kg~aFVef~~~~~A~~Ai~~l~~~~~~i 78 (104)
T 1wex_A 5 SSGSHHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF------KRQALVEFENIDSAKECVTFAADVPVYI 78 (104)
T ss_dssp CCCSCCCCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCCBS
T ss_pred CCCCCCcCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC------CCEEEEEECCHHHHHHHHHHhccCCceE
Confidence 3344556677899999999999999999999999999999998764 799999999999999999988764 58
Q ss_pred eccEEEEEEcccCC
Q 024258 83 DGREITVQFAKYGP 96 (270)
Q Consensus 83 ~Gr~I~V~~a~~~~ 96 (270)
.|++|+|++++.+.
T Consensus 79 ~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 79 AGQQAFFNYSTSKR 92 (104)
T ss_dssp SSSBCEEEECSSSS
T ss_pred CCEEEEEEEccCcc
Confidence 99999999998543
No 111
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.1e-18 Score=138.32 Aligned_cols=84 Identities=15% Similarity=0.225 Sum_probs=76.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++|||+|||+++++++|+++|++||.|.++.++.+..+|+++|||||+|.+.++|++|++ +|+..++|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34467899999999999999999999999999886666777799999999999999999999999 99999999999999
Q ss_pred EcccC
Q 024258 91 FAKYG 95 (270)
Q Consensus 91 ~a~~~ 95 (270)
++.++
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98753
No 112
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=2.6e-18 Score=150.66 Aligned_cols=82 Identities=27% Similarity=0.389 Sum_probs=77.5
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCC--CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYG--KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G--~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
+.++|||+||++++++++|+++|++|| .|.+|+|++|+.++++||||||+|.+.++|++||+.||+..|.|+.|+|++
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 024258 92 AKYG 95 (270)
Q Consensus 92 a~~~ 95 (270)
+++.
T Consensus 147 a~~~ 150 (229)
T 3q2s_C 147 VNKQ 150 (229)
T ss_dssp CCHH
T ss_pred CCCC
Confidence 8743
No 113
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=125.76 Aligned_cols=82 Identities=29% Similarity=0.425 Sum_probs=75.1
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe--ccE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD--GRE 86 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~--Gr~ 86 (270)
.....+.++|||+|||+++++++|+++|++||.|.++.+.++ +|||||+|.+.++|++|++.||+..+. |+.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~------~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 11 YGKANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG------DSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS------SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC------CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 345566789999999999999999999999999999999754 789999999999999999999999999 999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++++++
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 114
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.73 E-value=2e-18 Score=133.49 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=78.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCC---eEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGK---VVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~---I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
...+..+.++|||+|||+++++++|+++|+.||. |.+|++++++. |+++|||||+|.+.++|++|++ +|+..++|
T Consensus 4 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g 81 (107)
T 2lmi_A 4 LEEEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQ 81 (107)
T ss_dssp CCCCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSS
T ss_pred CcCCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCC
Confidence 3456677899999999999999999999999988 89999999986 9999999999999999999999 99999999
Q ss_pred cEEEEEEccc
Q 024258 85 REITVQFAKY 94 (270)
Q Consensus 85 r~I~V~~a~~ 94 (270)
+.|+|.++.+
T Consensus 82 r~i~V~~a~~ 91 (107)
T 2lmi_A 82 RYVEVYEINN 91 (107)
T ss_dssp SCCCCEECCH
T ss_pred eEEEEEECCH
Confidence 9999999874
No 115
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.3e-17 Score=124.58 Aligned_cols=78 Identities=24% Similarity=0.402 Sum_probs=72.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 75 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--------KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVE 75 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--------TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEE
Confidence 44567999999999999999999999999999999986 6899999999999999999999999999999999
Q ss_pred EcccCC
Q 024258 91 FAKYGP 96 (270)
Q Consensus 91 ~a~~~~ 96 (270)
++++++
T Consensus 76 ~a~~~~ 81 (90)
T 2dnq_A 76 ASKNKS 81 (90)
T ss_dssp CSSCCC
T ss_pred ECCCCC
Confidence 998654
No 116
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.73 E-value=5.8e-18 Score=127.76 Aligned_cols=85 Identities=25% Similarity=0.503 Sum_probs=76.2
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc
Q 024258 10 PDITDTYSLLVLNITFRTTADDLF----PLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr 85 (270)
++..+.++|||+|||+++++++|+ ++|++||.|.++.+.+ +|+++|||||+|.+.++|++|++.|||..+.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~---~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 79 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH---HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc---CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCc
Confidence 345678999999999999999999 9999999999999874 578899999999999999999999999999999
Q ss_pred EEEEEEcccCCc
Q 024258 86 EITVQFAKYGPN 97 (270)
Q Consensus 86 ~I~V~~a~~~~~ 97 (270)
.|+|+++++++.
T Consensus 80 ~l~v~~a~~~~~ 91 (97)
T 1nu4_A 80 PMRIQYAKTDSD 91 (97)
T ss_dssp ECEEEECSSCCT
T ss_pred EEEEEEccCCCc
Confidence 999999986553
No 117
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.72 E-value=9.8e-18 Score=131.43 Aligned_cols=82 Identities=18% Similarity=0.170 Sum_probs=73.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
.+...++|||+|||+++++++|+++|++|| .|..+.+.. ++++|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~----~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V 99 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT----RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITV 99 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS----CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc----CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 345678999999999999999999999999 899998853 357999999999999999999999999999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
+++...+
T Consensus 100 ~~a~~~p 106 (111)
T 2jvr_A 100 ERDDNPP 106 (111)
T ss_dssp EESCC--
T ss_pred EECCCCC
Confidence 9987544
No 118
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=3.4e-19 Score=139.46 Aligned_cols=86 Identities=28% Similarity=0.422 Sum_probs=81.0
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEE--------EEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVD--------IFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~--------v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l 82 (270)
+..+.++|||+|||+++++++|+++|++||.|.+ ++++.++.+++++|||||+|.+.++|++|++.|||..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 4567789999999999999999999999999998 99999988999999999999999999999999999999
Q ss_pred eccEEEEEEcccCC
Q 024258 83 DGREITVQFAKYGP 96 (270)
Q Consensus 83 ~Gr~I~V~~a~~~~ 96 (270)
.|+.|+|+++++++
T Consensus 83 ~g~~l~V~~a~~~~ 96 (116)
T 2lcw_A 83 SGNPIKVSFATRRA 96 (116)
Confidence 99999999998654
No 119
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.72 E-value=1.1e-18 Score=133.05 Aligned_cols=84 Identities=26% Similarity=0.369 Sum_probs=77.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++|||+|||+++++++|+++|++||.|.+ .++.++.+++++|||||+|.+.++|++|++ |||..+.|+.|+|+
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3446889999999999999999999999999988 777887889999999999999999999999 99999999999999
Q ss_pred EcccCC
Q 024258 91 FAKYGP 96 (270)
Q Consensus 91 ~a~~~~ 96 (270)
+++++.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 998543
No 120
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=126.17 Aligned_cols=82 Identities=22% Similarity=0.241 Sum_probs=73.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
......++|||+|||+++++++|+++|++||.|. +.++. ++++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW----QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE----ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc----CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999996 66654 467999999999999999999999999999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
+++++++
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9998654
No 121
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.72 E-value=9.4e-18 Score=138.74 Aligned_cols=137 Identities=20% Similarity=0.246 Sum_probs=101.6
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
.+..+.++|||+|||+++++++|+++|++||.+.. .++.+..+++++|||||+|.+.++|++|++ |||..+.|+.|+|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v 85 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKL 85 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEE
Confidence 45677899999999999999999999999998766 445555789999999999999999999995 9999999999999
Q ss_pred EEcccCCchhhhccc------------------------cccCCCCCCCCcceEEEcCCchHHHHHHHH------hCCcE
Q 024258 90 QFAKYGPNAERIKEG------------------------LLNHSRDRSTGQGVAVLGEDTEMITEIEII------EGGVT 139 (270)
Q Consensus 90 ~~a~~~~~~~~~~~~------------------------~~~~~~~~~~~rg~~~v~~~~~~~~~~~~~------~~G~~ 139 (270)
.++.++......... ....-...+.++|++|+.|.+......... ++|+.
T Consensus 86 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 165 (175)
T 1fje_B 86 EKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRS 165 (175)
T ss_dssp ECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEECSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEE
T ss_pred ecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEecCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 998854332111111 000004456778999999985444443333 55666
Q ss_pred EEecccccc
Q 024258 140 VEAGIGTNV 148 (270)
Q Consensus 140 ~~v~~~~~~ 148 (270)
+.+..+.++
T Consensus 166 i~v~~a~~k 174 (175)
T 1fje_B 166 VSLYYTGEK 174 (175)
T ss_dssp EEEEECSSC
T ss_pred EEEEecCCC
Confidence 666655543
No 122
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.72 E-value=6.7e-18 Score=128.86 Aligned_cols=85 Identities=26% Similarity=0.414 Sum_probs=78.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
+......++|||+|||+++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|++|++ ++..++|+.|.
T Consensus 3 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~ 79 (102)
T 2xs2_A 3 PEGKIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLK 79 (102)
T ss_dssp CCCEEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEE
Confidence 3445567899999999999999999999999999999999998 99999999999999999999998 99999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|.++.++.
T Consensus 80 v~~a~~~~ 87 (102)
T 2xs2_A 80 LGPAIRKQ 87 (102)
T ss_dssp EEEEEECC
T ss_pred EEECCcCc
Confidence 99988544
No 123
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.72 E-value=5.6e-18 Score=124.23 Aligned_cols=73 Identities=26% Similarity=0.501 Sum_probs=68.2
Q ss_pred CcEEEEcCCCCCC------CHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc-EE
Q 024258 15 TYSLLVLNITFRT------TADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR-EI 87 (270)
Q Consensus 15 ~~~lfVgnLp~~~------te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr-~I 87 (270)
+++|||+|||+.+ ++++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|++|++.|||..+.|+ +|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 779999999999999999987 46899999999999999999999999999999999 88
Q ss_pred EE
Q 024258 88 TV 89 (270)
Q Consensus 88 ~V 89 (270)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 124
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.7e-17 Score=121.94 Aligned_cols=81 Identities=27% Similarity=0.390 Sum_probs=73.9
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+....+.++|||+|||+++++++|+++|++||.|.++.+.+ +||||+|.+.++|++|++.||+..+.|+.|
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 74 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--------DYAFVHMERAEDAVEAIRGLDNTEFQGKRM 74 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--------SEEEEEESCHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 345566789999999999999999999999999999999973 499999999999999999999999999999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|++++++.
T Consensus 75 ~V~~a~~~~ 83 (92)
T 2dgt_A 75 HVQLSTSRL 83 (92)
T ss_dssp EEEESSCCC
T ss_pred EEEEccCCC
Confidence 999998554
No 125
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.71 E-value=2.4e-17 Score=127.01 Aligned_cols=80 Identities=13% Similarity=0.182 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCee--EeccEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV--VDGREI 87 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~--l~Gr~I 87 (270)
....++++|||+|||+++++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|++.|++.. +.|++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~------kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i 89 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK------KRQALVEFEDVLGACNAVNYAADNQIYIAGHPA 89 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC------CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEE
Confidence 34456789999999999999999999999999999999754 7999999999999999999999875 789999
Q ss_pred EEEEcccC
Q 024258 88 TVQFAKYG 95 (270)
Q Consensus 88 ~V~~a~~~ 95 (270)
+|++++++
T Consensus 90 ~V~~S~~k 97 (100)
T 3r27_A 90 FVNYSTSQ 97 (100)
T ss_dssp EEEECSCS
T ss_pred EEEecccc
Confidence 99999854
No 126
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=4.1e-18 Score=132.63 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=74.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++|||+|||+++++++|+++|++||.|.++.+..+..+++++|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34467899999999999999999999999998433222222378999999999999999999999999999999999999
Q ss_pred EcccCC
Q 024258 91 FAKYGP 96 (270)
Q Consensus 91 ~a~~~~ 96 (270)
++.++.
T Consensus 101 ~a~~~~ 106 (115)
T 2cpx_A 101 FGKNKK 106 (115)
T ss_dssp ECCCCS
T ss_pred EccCCC
Confidence 998544
No 127
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.71 E-value=2e-17 Score=124.29 Aligned_cols=74 Identities=24% Similarity=0.270 Sum_probs=70.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
.+..|||+||++.++|++|+++|.+||+|.++++.. +||||||+|.++++|++|++.||+.++.|++|+|+++.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~------~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL------NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET------TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC------CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999865 59999999999999999999999999999999999984
No 128
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.71 E-value=3.8e-18 Score=122.81 Aligned_cols=75 Identities=23% Similarity=0.417 Sum_probs=71.8
Q ss_pred EEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 17 SLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 17 ~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
+|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|++|++ +++..+.|+.|+|+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999999999999999999999999999999999999999999999 5999999999999875
No 129
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.71 E-value=3.1e-17 Score=134.79 Aligned_cols=126 Identities=22% Similarity=0.248 Sum_probs=95.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCC--CcccEEEEEEcCHHHHHHHHHhcCCeeEe---ccEEE
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTG--DSRGFAFVRYKYADEAQKAVDRLDGRVVD---GREIT 88 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg--~skG~aFV~F~s~e~A~~Al~~Lng~~l~---Gr~I~ 88 (270)
+.++|||+|||+++++++|+++|++||.|.++++++++.++ +++|||||+|.+.++|++|++.||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998887 89999999999999999999999998875 67888
Q ss_pred EEEcccCCchhhhccc---------------------------cccCCCCCCCCcceEEEcCCchHHHHHHH-HhCCcE
Q 024258 89 VQFAKYGPNAERIKEG---------------------------LLNHSRDRSTGQGVAVLGEDTEMITEIEI-IEGGVT 139 (270)
Q Consensus 89 V~~a~~~~~~~~~~~~---------------------------~~~~~~~~~~~rg~~~v~~~~~~~~~~~~-~~~G~~ 139 (270)
+.++............ -.......+.++|++|+.|.+........ .++|..
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~ 160 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQ 160 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCc
Confidence 8887644322111000 01111234567889999998544444333 466654
No 130
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=125.35 Aligned_cols=83 Identities=23% Similarity=0.481 Sum_probs=74.8
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.....+.++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 10 ~~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 84 (96)
T 1fjc_A 10 SKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVS 84 (96)
T ss_dssp TSTTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 3455678999999999999999999999999988766 35789999999999999999999999999999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|+++.++.
T Consensus 85 v~~a~~~~ 92 (96)
T 1fjc_A 85 LYYTGEKG 92 (96)
T ss_dssp EEECSSSC
T ss_pred EEEcCCCC
Confidence 99998544
No 131
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.9e-17 Score=121.77 Aligned_cols=81 Identities=27% Similarity=0.415 Sum_probs=73.3
Q ss_pred CCCCCCCCcEEEEcCCCCCCCHHHHHHhhccC--CCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc
Q 024258 8 GPPDITDTYSLLVLNITFRTTADDLFPLFDKY--GKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~--G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr 85 (270)
......+.++|||+|||+++++++|+++|++| |.|.++.+. +|||||+|.+.++|++|++.|||..+.|+
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 79 (99)
T 2cpd_A 8 DEDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--------RDYAFVHFSNREDAVEAMKALNGKVLDGS 79 (99)
T ss_dssp CCSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHSSEEETTE
T ss_pred cccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--------CCeEEEEeCCHHHHHHHHHHhCCCEeCCc
Confidence 34455678999999999999999999999999 999999874 67999999999999999999999999999
Q ss_pred EEEEEEcccCC
Q 024258 86 EITVQFAKYGP 96 (270)
Q Consensus 86 ~I~V~~a~~~~ 96 (270)
.|+|++++++.
T Consensus 80 ~l~v~~a~~~~ 90 (99)
T 2cpd_A 80 PIEVTLAKPVD 90 (99)
T ss_dssp EEEEECCCCCC
T ss_pred EEEEEECCCCC
Confidence 99999998544
No 132
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.5e-17 Score=121.57 Aligned_cols=82 Identities=26% Similarity=0.402 Sum_probs=73.4
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
+......+.++|||+|+ ++++++|+++|++||.|.+|.+. +++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 7 ~~~~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 78 (97)
T 1x5p_A 7 GERRAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQ 78 (97)
T ss_dssp SCCCCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE------TTTTEEEEEESSHHHHHHHHHHTTTEEETTEE
T ss_pred CccCCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec------CCCCEEEEEECCHHHHHHHHHHhCCCeECCeE
Confidence 33445567899999996 89999999999999999999984 46899999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++.+++
T Consensus 79 l~v~~a~~~~ 88 (97)
T 1x5p_A 79 LKVNIARKQP 88 (97)
T ss_dssp EEEECCSSCC
T ss_pred EEEEECCCCC
Confidence 9999998654
No 133
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.70 E-value=3.3e-17 Score=127.23 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=72.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
....+.++|||+|||+++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|||..++|+.|+|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--------kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 97 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--------NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEV 97 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--------TTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--------CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 455678999999999999999999999999999999986 789999999999999999999999999999999
Q ss_pred EEcccCCc
Q 024258 90 QFAKYGPN 97 (270)
Q Consensus 90 ~~a~~~~~ 97 (270)
+++++++.
T Consensus 98 ~~a~~~~~ 105 (108)
T 2jvo_A 98 VYSKLPAK 105 (108)
T ss_dssp ESCSCCC-
T ss_pred EEecCCCC
Confidence 99986543
No 134
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.8e-17 Score=126.38 Aligned_cols=81 Identities=19% Similarity=0.428 Sum_probs=74.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
.....++|||+|||+++++++|+++|++||.|.+|++.++ +|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~------~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 94 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE------KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 94 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT------TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 3456789999999999999999999999999999999876 7999999999999999999999999999999999
Q ss_pred EcccCCc
Q 024258 91 FAKYGPN 97 (270)
Q Consensus 91 ~a~~~~~ 97 (270)
++++++.
T Consensus 95 ~a~~~~~ 101 (109)
T 1x4g_A 95 WGKESPD 101 (109)
T ss_dssp CCCCCCS
T ss_pred ecCCCCC
Confidence 9986543
No 135
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3e-17 Score=130.32 Aligned_cols=81 Identities=17% Similarity=0.318 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCC--eeEeccEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--RVVDGREI 87 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng--~~l~Gr~I 87 (270)
....++++|||+|||++++|++|+++|++||.|.++.++++ ||||||+|.+.++|++|++.|++ ..+.|++|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~------kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG------KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG------GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 44556889999999999999999999999999999999876 79999999999999999998874 57999999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|++++++.
T Consensus 100 ~V~~a~~k~ 108 (119)
T 2ad9_A 100 YIQFSNHKE 108 (119)
T ss_dssp EEEECSSSS
T ss_pred EEEEccCCC
Confidence 999998543
No 136
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.4e-17 Score=125.50 Aligned_cols=77 Identities=23% Similarity=0.402 Sum_probs=71.6
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
....++|||+|||+++++++|+++|++||.|.++++. +++|||||+|.+.++|++|++.|||..++|+.|+|++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~------~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 97 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY------PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGW 97 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCB
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe------cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEe
Confidence 3457899999999999999999999999999999987 3589999999999999999999999999999999999
Q ss_pred ccc
Q 024258 92 AKY 94 (270)
Q Consensus 92 a~~ 94 (270)
+++
T Consensus 98 a~~ 100 (101)
T 2la4_A 98 GKE 100 (101)
T ss_dssp CCC
T ss_pred ccC
Confidence 874
No 137
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=6e-17 Score=120.88 Aligned_cols=79 Identities=27% Similarity=0.541 Sum_probs=72.3
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
....+.++|||+|||+++++++|+++|++||.|.++++.+ +||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 4 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--------~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 75 (90)
T 2dnp_A 4 GSSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--------DYAFVHMEKEADAKAAIAQLNGKEVKGKRINV 75 (90)
T ss_dssp CSSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--------SCEEEEESCHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--------CEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999999999973 49999999999999999999999999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
++++++.
T Consensus 76 ~~a~~~~ 82 (90)
T 2dnp_A 76 ELSTKGQ 82 (90)
T ss_dssp EESCCCC
T ss_pred EECCCCC
Confidence 9998543
No 138
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.70 E-value=9.1e-18 Score=131.65 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=66.6
Q ss_pred CCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 7 SGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 7 s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
.+++.....++|||+|||+++++++|+++|++||+|.++.++.+ |||||+|.+.++|++|++.||+..++|+.
T Consensus 8 ~gpp~~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-------g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 80 (115)
T 3beg_B 8 YGPPSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-------GTGVVEFVRKEDMTYAVRKLDNTKFRSHE 80 (115)
T ss_dssp ---------CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-------SEEEEEESSHHHHHHHHHHHTTCBCCCTT
T ss_pred CCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-------CEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 44555567899999999999999999999999999999999765 89999999999999999999999999998
Q ss_pred -----EEEEEccc
Q 024258 87 -----ITVQFAKY 94 (270)
Q Consensus 87 -----I~V~~a~~ 94 (270)
++|..+.+
T Consensus 81 ~~~~~i~v~~~~~ 93 (115)
T 3beg_B 81 GETAYIRVKVDGP 93 (115)
T ss_dssp SCCCBCEEEECC-
T ss_pred eeeEEEEeccCCC
Confidence 66666553
No 139
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=2.2e-17 Score=125.74 Aligned_cols=76 Identities=30% Similarity=0.531 Sum_probs=72.2
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccC
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYG 95 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~ 95 (270)
++|||+|||+++++++|+++|++||.|.++.+..+ ++|||||+|.+.++|++|++.|||..+.|+.|+|++++++
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 58999999999999999999999999999999877 6899999999999999999999999999999999999865
Q ss_pred C
Q 024258 96 P 96 (270)
Q Consensus 96 ~ 96 (270)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 5
No 140
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.70 E-value=8.4e-17 Score=122.38 Aligned_cols=78 Identities=18% Similarity=0.439 Sum_probs=71.5
Q ss_pred CCCCCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 10 PDITDTYSLLVLNITF-RTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
....+.++|||+|||+ ++++++|+++|++||.|.++++. +|||||+|.+.++|++|++.|||..+.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--------SSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 4556789999999998 99999999999999999999983 78999999999999999999999999999999
Q ss_pred EEEcccC
Q 024258 89 VQFAKYG 95 (270)
Q Consensus 89 V~~a~~~ 95 (270)
|++++++
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998754
No 141
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.69 E-value=1.2e-16 Score=129.97 Aligned_cols=85 Identities=27% Similarity=0.532 Sum_probs=80.6
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.....+.++|||+|||+++++++|+++|++||.|.++.+..++.+|+++|||||+|.+.++|++|++.|||..++|+.|+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~ 160 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLR 160 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEE
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcc
Q 024258 89 VQFAK 93 (270)
Q Consensus 89 V~~a~ 93 (270)
|++++
T Consensus 161 v~~a~ 165 (166)
T 3md3_A 161 INWAA 165 (166)
T ss_dssp EEESC
T ss_pred EEecC
Confidence 99986
No 142
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=3.8e-17 Score=123.16 Aligned_cols=83 Identities=24% Similarity=0.290 Sum_probs=74.5
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEE-EEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDI-FIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v-~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+.....++|||+|||+++++++|+++|++||.|.++ .++.++.+++ |||+|.+.++|++|++.|||..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~----afV~f~~~~~a~~Ai~~l~g~~~~g~~l 84 (96)
T 2e44_A 9 VPKRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAV----VNVTYSSKDQARQALDKLNGFQLENFTL 84 (96)
T ss_dssp CCCCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEE----EEEEESSHHHHHHHHHHHTTCBCSSCBC
T ss_pred CCCCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCE----EEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 3445567899999999999999999999999999999 5888765543 9999999999999999999999999999
Q ss_pred EEEEcccC
Q 024258 88 TVQFAKYG 95 (270)
Q Consensus 88 ~V~~a~~~ 95 (270)
+|+++.++
T Consensus 85 ~V~~a~~~ 92 (96)
T 2e44_A 85 KVAYIPDE 92 (96)
T ss_dssp EEEECCCC
T ss_pred EEEEcCcc
Confidence 99999865
No 143
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.69 E-value=3.1e-17 Score=127.80 Aligned_cols=80 Identities=29% Similarity=0.489 Sum_probs=74.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
+..+++|||+|||+++++++|+++|++||.|.++.++++ ++++|||||+|.+.++|++|++.|||..+.|+.|+|++
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 345689999999999999999999999999999999865 55699999999999999999999999999999999999
Q ss_pred ccc
Q 024258 92 AKY 94 (270)
Q Consensus 92 a~~ 94 (270)
+.+
T Consensus 82 a~~ 84 (115)
T 3lqv_A 82 YNA 84 (115)
T ss_dssp CCH
T ss_pred ecC
Confidence 974
No 144
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.3e-17 Score=123.35 Aligned_cols=79 Identities=19% Similarity=0.476 Sum_probs=71.2
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 11 DITDTYSLLVLNITF-RTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
...+.++|||+|||+ ++++++|+++|++||.|.++.+. +|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--------~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 77 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--------NAFGFIQFDNPQSVRDAIECESQEMNFGKKLIL 77 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--------TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCE
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--------CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEE
Confidence 345688999999999 99999999999999999999983 789999999999999999999999999999999
Q ss_pred EEcccCCc
Q 024258 90 QFAKYGPN 97 (270)
Q Consensus 90 ~~a~~~~~ 97 (270)
++++++..
T Consensus 78 ~~a~~~~~ 85 (96)
T 2kvi_A 78 EVSSSNAR 85 (96)
T ss_dssp EEEECCCC
T ss_pred EEcCcCCC
Confidence 99986543
No 145
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.69 E-value=7.9e-17 Score=124.75 Aligned_cols=77 Identities=26% Similarity=0.454 Sum_probs=71.0
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 11 DITDTYSLLVLNITFR-TTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
.....++|||+|||++ +++++|+++|++||.|.+|.+ ++|||||+|.+.++|++|++.||+..++|+.|+|
T Consensus 23 ~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--------~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 94 (110)
T 1wf1_A 23 PKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--------HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDI 94 (110)
T ss_dssp CTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--------ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCE
T ss_pred CCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--------eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 3345689999999999 999999999999999999998 4899999999999999999999999999999999
Q ss_pred EEcccC
Q 024258 90 QFAKYG 95 (270)
Q Consensus 90 ~~a~~~ 95 (270)
++++++
T Consensus 95 ~~a~~~ 100 (110)
T 1wf1_A 95 NMAGEP 100 (110)
T ss_dssp EESCCC
T ss_pred EECCCC
Confidence 999743
No 146
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-17 Score=122.89 Aligned_cols=79 Identities=25% Similarity=0.371 Sum_probs=70.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCC-eEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCC-eeEeccEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGK-VVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG-RVVDGREIT 88 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~-I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng-~~l~Gr~I~ 88 (270)
...+.++|||+|||+++++++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..++|+.|+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~-------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 76 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL-------KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIME 76 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE-------ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc-------CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEE
Confidence 3456789999999999999999999999999 6665552 489999999999999999999999 999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|++++++.
T Consensus 77 v~~a~~~~ 84 (93)
T 2cqh_A 77 VDYSVSKK 84 (93)
T ss_dssp EEECCCCC
T ss_pred EEEccCcc
Confidence 99998543
No 147
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=134.88 Aligned_cols=85 Identities=26% Similarity=0.343 Sum_probs=74.1
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEE--EEccc---CCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDI--FIPRD---RRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v--~i~~d---~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
..+.++|||+|||+++++++|+++|++||.|.++ .++.+ ..+|+++|||||+|.+.++|++|++.|||..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 4567899999999999999999999999998764 11111 347899999999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|+++++..
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998544
No 148
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.68 E-value=7.2e-17 Score=131.65 Aligned_cols=83 Identities=25% Similarity=0.418 Sum_probs=76.4
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.......++|||+|||+++++++|+++|++||.|.+++++++ ++|||||+|.+.++|++|++.|||..+.|++|+
T Consensus 67 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 141 (150)
T 2i2y_A 67 RDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVR 141 (150)
T ss_dssp SSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 445567899999999999999999999999999999999876 589999999999999999999999999999999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|+++++++
T Consensus 142 v~~a~~~~ 149 (150)
T 2i2y_A 142 VELSNGEK 149 (150)
T ss_dssp EEECCCCC
T ss_pred EEEcCCCC
Confidence 99998543
No 149
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-16 Score=119.96 Aligned_cols=78 Identities=17% Similarity=0.232 Sum_probs=70.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
....++|||+|||+++++++|+++|++||.|.+| +.++.+++ ||||+|.+.++|++|++ |||..++|+.|+|++
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 4456899999999999999999999999999987 55666666 99999999999999999 999999999999998
Q ss_pred cccC
Q 024258 92 AKYG 95 (270)
Q Consensus 92 a~~~ 95 (270)
+.++
T Consensus 79 a~~~ 82 (94)
T 2e5g_A 79 REQK 82 (94)
T ss_dssp SCCS
T ss_pred CCcC
Confidence 7643
No 150
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=1.6e-17 Score=135.17 Aligned_cols=84 Identities=19% Similarity=0.247 Sum_probs=74.5
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
......++|||+|||++++|++|+++|++|| +.+|.+++|+. |+++|||||+|.+.++|++|+ .+|+..+.|+.|+|
T Consensus 41 ~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V 117 (139)
T 2hgn_A 41 VQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIEL 117 (139)
T ss_dssp ----CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEE
Confidence 3455678999999999999999999999999 77999999975 999999999999999999999 68999999999999
Q ss_pred EEcccCC
Q 024258 90 QFAKYGP 96 (270)
Q Consensus 90 ~~a~~~~ 96 (270)
..+..+.
T Consensus 118 ~~a~~~~ 124 (139)
T 2hgn_A 118 FLNSTTG 124 (139)
T ss_dssp EECCCSC
T ss_pred EECCCCC
Confidence 9987543
No 151
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.68 E-value=9.9e-17 Score=135.30 Aligned_cols=83 Identities=29% Similarity=0.472 Sum_probs=78.5
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
.....++|||+|||+++++++|+++|++||.|.+|.+..++ +++++|||||+|.+.++|++|++.|||..++|+.|+|+
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34457899999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred Eccc
Q 024258 91 FAKY 94 (270)
Q Consensus 91 ~a~~ 94 (270)
++..
T Consensus 163 ~a~~ 166 (177)
T 2f3j_A 163 LVAS 166 (177)
T ss_dssp EESS
T ss_pred EecC
Confidence 9874
No 152
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.67 E-value=6.9e-17 Score=129.41 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=74.1
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeE--EEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVV--DIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~--~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
....+.++|||+|||+++++++|+++|++| .|. +|++++|+. |+++|||||+|.+.++|++|++ +++..++||.|
T Consensus 37 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I 113 (126)
T 2hgm_A 37 ADSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALG-KHKERIGHRYI 113 (126)
T ss_dssp TCSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHH-HCCCEECCEEE
Confidence 345567899999999999999999999999 677 999999976 9999999999999999999998 48899999999
Q ss_pred EEEEcc
Q 024258 88 TVQFAK 93 (270)
Q Consensus 88 ~V~~a~ 93 (270)
+|..+.
T Consensus 114 ~V~~a~ 119 (126)
T 2hgm_A 114 EVFKSS 119 (126)
T ss_dssp CCEEEC
T ss_pred EEEECC
Confidence 998876
No 153
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=125.69 Aligned_cols=80 Identities=18% Similarity=0.246 Sum_probs=71.3
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCC--eeEeccEE
Q 024258 11 DITDTYSLLVLNITFR-TTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG--RVVDGREI 87 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng--~~l~Gr~I 87 (270)
...++++|||+|||++ +++++|+++|++||.|.++.+++ +||||||+|.+.++|+.|++.|++ ..+.|++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~------~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR------MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec------CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 3556899999999998 99999999999999999999974 379999999999999999998864 56899999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|++++.+.
T Consensus 95 ~V~~a~~~~ 103 (112)
T 1x4f_A 95 KVDLSEKYK 103 (112)
T ss_dssp EEEEECSCS
T ss_pred EEEECcccc
Confidence 999997443
No 154
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.67 E-value=4.4e-16 Score=138.71 Aligned_cols=82 Identities=27% Similarity=0.428 Sum_probs=78.4
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
..++|||+|||+++++++|+++|++||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|+|..+.|+.|.|.++.
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~ 173 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTD 173 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cC
Q 024258 94 YG 95 (270)
Q Consensus 94 ~~ 95 (270)
++
T Consensus 174 ~~ 175 (284)
T 3smz_A 174 AG 175 (284)
T ss_dssp GG
T ss_pred CC
Confidence 54
No 155
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=6.4e-17 Score=126.09 Aligned_cols=78 Identities=19% Similarity=0.240 Sum_probs=72.1
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
..+..++|||+|||+++++++|+++|++||.|.+|.+.. ++|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 6 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~------~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE------GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp TSEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS------SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 344578999999999999999999999999999999864 47899999999999999999999999999999999
Q ss_pred Eccc
Q 024258 91 FAKY 94 (270)
Q Consensus 91 ~a~~ 94 (270)
|+..
T Consensus 80 ~a~~ 83 (111)
T 1whx_A 80 WAPI 83 (111)
T ss_dssp EEET
T ss_pred ECCC
Confidence 9974
No 156
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=2.4e-16 Score=132.17 Aligned_cols=85 Identities=31% Similarity=0.390 Sum_probs=76.2
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
....++|||+|||+++++++|+++|++||.|.++.+..++.+|+++|||||+|.+.++|++|++. ++..++|+.|.|.+
T Consensus 101 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~ 179 (196)
T 1l3k_A 101 HLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRK 179 (196)
T ss_dssp --CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEE
T ss_pred CCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEe
Confidence 34568999999999999999999999999999999999998999999999999999999999985 89999999999999
Q ss_pred cccCCc
Q 024258 92 AKYGPN 97 (270)
Q Consensus 92 a~~~~~ 97 (270)
+.++..
T Consensus 180 a~~k~~ 185 (196)
T 1l3k_A 180 ALSKQE 185 (196)
T ss_dssp CC----
T ss_pred cCChhH
Confidence 986543
No 157
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=5.3e-17 Score=129.49 Aligned_cols=81 Identities=19% Similarity=0.274 Sum_probs=74.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCe----EEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKV----VDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I----~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
..+.++|||+|||+++++++|+++|++||.| .+|.++++ .+|+++|||||+|.+.++|++|++. |+..+.||.|
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i 97 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYI 97 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEE
Confidence 3567899999999999999999999999975 68999998 5899999999999999999999996 9999999999
Q ss_pred EEEEccc
Q 024258 88 TVQFAKY 94 (270)
Q Consensus 88 ~V~~a~~ 94 (270)
.|..+.+
T Consensus 98 ~V~~a~~ 104 (123)
T 2dha_A 98 ELFRSTA 104 (123)
T ss_dssp CCEEECH
T ss_pred EEEECCH
Confidence 9998863
No 158
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.66 E-value=2.6e-16 Score=132.12 Aligned_cols=84 Identities=23% Similarity=0.385 Sum_probs=80.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.+.++|||+|||+++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|++|++.|||..++|+.|+|+++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 56799999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred ccCC
Q 024258 93 KYGP 96 (270)
Q Consensus 93 ~~~~ 96 (270)
.++.
T Consensus 192 ~~~~ 195 (198)
T 2yh0_A 192 SVGA 195 (198)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8654
No 159
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.66 E-value=2.4e-16 Score=129.47 Aligned_cols=82 Identities=22% Similarity=0.381 Sum_probs=78.0
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
....++|||+|||+++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|++|++.|||..++|++|+|++
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 170 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQR 170 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEe
Confidence 34578999999999999999999999999999999999988999999999999999999999999999999999999998
Q ss_pred cc
Q 024258 92 AK 93 (270)
Q Consensus 92 a~ 93 (270)
|.
T Consensus 171 As 172 (172)
T 2g4b_A 171 AS 172 (172)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 160
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.66 E-value=2.7e-16 Score=133.84 Aligned_cols=85 Identities=25% Similarity=0.427 Sum_probs=80.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
...++|||+|||+++++++|+++|++||.|.++++.+++.+|+++|||||+|.+.++|.+|++.|||..++|+.|+|+++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCc
Q 024258 93 KYGPN 97 (270)
Q Consensus 93 ~~~~~ 97 (270)
.+++.
T Consensus 203 ~~~~~ 207 (216)
T 2qfj_A 203 VTPPM 207 (216)
T ss_dssp SSCSS
T ss_pred cCCCC
Confidence 86543
No 161
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=2.6e-16 Score=117.17 Aligned_cols=75 Identities=19% Similarity=0.367 Sum_probs=70.1
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
+..++|||+|||+++++++|+++|++| .|.++++. +++|||||+|.+.++|++|++.|||..+.|++|+|+++
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~------~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 75 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD------RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQ 75 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE------GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe------CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEc
Confidence 456899999999999999999999999 99999884 57999999999999999999999999999999999998
Q ss_pred cc
Q 024258 93 KY 94 (270)
Q Consensus 93 ~~ 94 (270)
..
T Consensus 76 ~~ 77 (88)
T 1wg1_A 76 PT 77 (88)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 162
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2e-16 Score=126.75 Aligned_cols=79 Identities=19% Similarity=0.235 Sum_probs=72.3
Q ss_pred cEEEEcCC----CCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcC----HHH----HHHHHH--hcCCee
Q 024258 16 YSLLVLNI----TFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKY----ADE----AQKAVD--RLDGRV 81 (270)
Q Consensus 16 ~~lfVgnL----p~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s----~e~----A~~Al~--~Lng~~ 81 (270)
.+|||+|| |+.+++++|+++|++||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999999999999999996 433 788888 789999
Q ss_pred EeccEEEEEEccc
Q 024258 82 VDGREITVQFAKY 94 (270)
Q Consensus 82 l~Gr~I~V~~a~~ 94 (270)
++|++|+|++.+.
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999998763
No 163
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=3.3e-16 Score=122.32 Aligned_cols=80 Identities=16% Similarity=0.280 Sum_probs=69.6
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCC---CCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRT---GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~t---g~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
...+.++|||+|||+++++++|+++|++||.|. +.++.++.+ |+++|||||+|.+.++|++|++.|+ .++|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 345678999999999999999999999999999 888888777 7999999999999999999999883 4667777
Q ss_pred EEEEcc
Q 024258 88 TVQFAK 93 (270)
Q Consensus 88 ~V~~a~ 93 (270)
.+..+.
T Consensus 81 ~~~~~~ 86 (114)
T 2dnl_A 81 LCVSSP 86 (114)
T ss_dssp EEECCS
T ss_pred EeccCC
Confidence 666543
No 164
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.65 E-value=6.6e-16 Score=147.35 Aligned_cols=85 Identities=27% Similarity=0.515 Sum_probs=80.3
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
..+.++|||+|||+.+++++|+++|++||.|..|.|+.++.+++++|||||+|.+.++|++||+.|||..|.|+.|.|.+
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~ 178 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDV 178 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCC
Q 024258 92 AKYGP 96 (270)
Q Consensus 92 a~~~~ 96 (270)
+.+..
T Consensus 179 a~~~~ 183 (437)
T 3pgw_S 179 ERGRT 183 (437)
T ss_pred eCCCC
Confidence 98644
No 165
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=6.2e-16 Score=115.91 Aligned_cols=79 Identities=32% Similarity=0.435 Sum_probs=63.0
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE--eccE
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV--DGRE 86 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l--~Gr~ 86 (270)
.....+.++|||+|||+++++++|+++|++||.|.+++++++ +||||||+|.+.++|++ +++..+ .|+.
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-----srGfaFV~F~~~~~A~~----~~~~~~~~~g~~ 75 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-----FRAFAFVTFADDKVAQS----LCGEDLIIKGIS 75 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-----CCSEEEEEESCHHHHHH----HTTCEEEETTEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-----CCCEEEEEECCHHHHHH----HcCCCcccCCEE
Confidence 344567789999999999999999999999999999999875 79999999999999984 455554 5899
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|.|.++.++.
T Consensus 76 v~v~~a~~k~ 85 (89)
T 3d2w_A 76 VHISNAEPKH 85 (89)
T ss_dssp EEEEECC---
T ss_pred EEEEEcCCCC
Confidence 9999988543
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.65 E-value=2.2e-16 Score=129.12 Aligned_cols=81 Identities=26% Similarity=0.394 Sum_probs=77.3
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
+.++|||+|||+++++++|+++|++||.|.++.+..++.+|+++|||||+|.+.++|++|++ +++..+.|+.|+|+++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 46799999999999999999999999999999999998899999999999999999999998 89999999999999998
Q ss_pred cC
Q 024258 94 YG 95 (270)
Q Consensus 94 ~~ 95 (270)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 167
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.64 E-value=2.8e-16 Score=135.12 Aligned_cols=80 Identities=19% Similarity=0.460 Sum_probs=74.9
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
..++|||+|||+++++++|+++|++||.|.++++++|+ +.++|||||+|.+.++|++|++.|||..++|++|+|+++.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~--~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~ 179 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 179 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC--CCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcC
Confidence 45789999999999999999999999999999999884 5589999999999999999999999999999999999998
Q ss_pred cC
Q 024258 94 YG 95 (270)
Q Consensus 94 ~~ 95 (270)
++
T Consensus 180 ~~ 181 (213)
T 4f02_A 180 SR 181 (213)
T ss_dssp CH
T ss_pred CC
Confidence 54
No 168
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=5e-16 Score=122.33 Aligned_cols=80 Identities=24% Similarity=0.439 Sum_probs=71.6
Q ss_pred CCCCCcEEEE--cCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE-----e
Q 024258 11 DITDTYSLLV--LNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV-----D 83 (270)
Q Consensus 11 ~~~~~~~lfV--gnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l-----~ 83 (270)
...++++||| |||++++++++|+++|++||.|.++.+..+ ||||||+|.+.++|++|++.|||..+ .
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~------rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~ 94 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN------KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 94 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT------CSCEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC------CCEEEEEECCHHHHHHHHHHhCCCEEccccCC
Confidence 3446789999 779999999999999999999999988643 79999999999999999999999998 7
Q ss_pred ccEEEEEEcccCC
Q 024258 84 GREITVQFAKYGP 96 (270)
Q Consensus 84 Gr~I~V~~a~~~~ 96 (270)
|++|.|.+++.-+
T Consensus 95 g~~l~v~~a~~~p 107 (114)
T 2cq2_A 95 KITLYLNFVEKVQ 107 (114)
T ss_dssp EEECEEEEESCCC
T ss_pred CcEEEEEecccCc
Confidence 8999999987443
No 169
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=7.6e-16 Score=128.52 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=73.4
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec--cEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REI 87 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G--r~I 87 (270)
+.+....+|||+||++.+++++|+++|++||+|.+|.+..+ +++|||||+|.+.++|++|++.|||..+.| ++|
T Consensus 41 ~~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L 116 (164)
T 1sjr_A 41 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTL 116 (164)
T ss_dssp CCCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCE
T ss_pred CCCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEE
Confidence 34556778999999999999999999999999999998643 358999999999999999999999999965 999
Q ss_pred EEEEcccC
Q 024258 88 TVQFAKYG 95 (270)
Q Consensus 88 ~V~~a~~~ 95 (270)
+|+|++++
T Consensus 117 ~V~~Ak~~ 124 (164)
T 1sjr_A 117 RIDFSKLT 124 (164)
T ss_dssp EEEECSSS
T ss_pred EEEEecCC
Confidence 99999864
No 170
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.63 E-value=1.3e-15 Score=125.10 Aligned_cols=76 Identities=25% Similarity=0.491 Sum_probs=68.3
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCee
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKY----G-------KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~----G-------~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~ 81 (270)
++.++|||+|||+++++++|+++|++| | .|.++.+.+ ++|||||+|.+.++|++|+ .+||..
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~------~~g~afV~f~~~~~A~~A~-~~~~~~ 74 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ------DKNFAFLEFRSVDETTQAM-AFDGII 74 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET------TTTEEEEEESSHHHHHHHG-GGTTCE
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC------CCCEEEEEeCCHHHHHHHH-HhCCcE
Confidence 467899999999999999999999999 6 777777643 4899999999999999999 799999
Q ss_pred EeccEEEEEEcccC
Q 024258 82 VDGREITVQFAKYG 95 (270)
Q Consensus 82 l~Gr~I~V~~a~~~ 95 (270)
+.|+.|+|+++...
T Consensus 75 ~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 75 FQGQSLKIRRPHDY 88 (172)
T ss_dssp ETTEECEEECCSSC
T ss_pred ecCceeeecCCccc
Confidence 99999999998754
No 171
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.63 E-value=1.2e-15 Score=124.54 Aligned_cols=82 Identities=38% Similarity=0.607 Sum_probs=77.3
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec--cEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG--REIT 88 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G--r~I~ 88 (270)
...+.++|||+|||+++++++|+++|++||.|.++.+.+++.+|+++|||||+|.+.++|.+|++.|||..+.| ++|+
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~ 164 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLS 164 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCE
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEE
Confidence 34567899999999999999999999999999999999998899999999999999999999999999999977 9999
Q ss_pred EEEc
Q 024258 89 VQFA 92 (270)
Q Consensus 89 V~~a 92 (270)
|++|
T Consensus 165 V~~A 168 (168)
T 1b7f_A 165 VRLA 168 (168)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9985
No 172
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.62 E-value=1.9e-15 Score=133.93 Aligned_cols=87 Identities=33% Similarity=0.597 Sum_probs=77.8
Q ss_pred CCCCCCCCCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCee
Q 024258 2 SHFGRSGPPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (270)
Q Consensus 2 s~~~~s~~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~ 81 (270)
+++..++.....+.++|||+|||+++++++|+++|++||.|.+|.+.++ +|||||+|.+.++|++|++.+||..
T Consensus 9 ~~~~~p~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~------kg~afV~f~~~~~A~~A~~~l~g~~ 82 (261)
T 3sde_A 9 KSFLKPGEKTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD------RGFGFIRLESRTLAEIAKAELDGTI 82 (261)
T ss_dssp CCCCCTTCCSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT------TTEEEEECSSHHHHHHHHHHHTTCE
T ss_pred cccCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC------CcEEEEEECCHHHHHHHHHHcCCcE
Confidence 3445555566677899999999999999999999999999999999654 7999999999999999999999999
Q ss_pred EeccEEEEEEccc
Q 024258 82 VDGREITVQFAKY 94 (270)
Q Consensus 82 l~Gr~I~V~~a~~ 94 (270)
+.|+.|+|.++.+
T Consensus 83 i~g~~l~v~~a~~ 95 (261)
T 3sde_A 83 LKSRPLRIRFATH 95 (261)
T ss_dssp ETTEECEEEECCC
T ss_pred ECCceeEeeeccc
Confidence 9999999999864
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.62 E-value=1.9e-15 Score=121.66 Aligned_cols=81 Identities=26% Similarity=0.420 Sum_probs=72.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccE-EEEEEcCHHHHHHHHHhcCCeeEec--cE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGRVVDG--RE 86 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~-aFV~F~s~e~A~~Al~~Lng~~l~G--r~ 86 (270)
..+++.-+|||+||++.+++++|+++|++||.|.+|.+..+ ++|| |||+|.+.++|+.|++.|||..+.| +.
T Consensus 23 ~~ps~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~-----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~ 97 (130)
T 3zzy_A 23 AGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCT 97 (130)
T ss_dssp --CCSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE-----TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEE
T ss_pred CCCCceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC-----CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcE
Confidence 34456678999999999999999999999999999988754 3688 9999999999999999999999988 89
Q ss_pred EEEEEcccC
Q 024258 87 ITVQFAKYG 95 (270)
Q Consensus 87 I~V~~a~~~ 95 (270)
|+|++++++
T Consensus 98 LrI~~ak~~ 106 (130)
T 3zzy_A 98 LRIDFSKLT 106 (130)
T ss_dssp EEEEECSCS
T ss_pred EEEEecCCC
Confidence 999999854
No 174
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.62 E-value=1.1e-15 Score=112.77 Aligned_cols=73 Identities=27% Similarity=0.569 Sum_probs=67.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCe
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKY----G-------KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGR 80 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~----G-------~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~ 80 (270)
..+.++|||+|||+++++++|+++|++| | .|.++++.++ +|||||+|.+.++|++|+ .|||.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~~A~-~l~g~ 75 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETTQAM-AFDGI 75 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHHHHG-GGTTC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHHHHH-hcCCC
Confidence 3467899999999999999999999999 8 9999998755 799999999999999999 89999
Q ss_pred eEeccEEEEEE
Q 024258 81 VVDGREITVQF 91 (270)
Q Consensus 81 ~l~Gr~I~V~~ 91 (270)
.+.|+.|+|+.
T Consensus 76 ~~~g~~l~V~r 86 (87)
T 2hzc_A 76 IFQGQSLKIRR 86 (87)
T ss_dssp EETTEECEEEC
T ss_pred EECCeEEEEeC
Confidence 99999999974
No 175
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.5e-16 Score=114.39 Aligned_cols=77 Identities=29% Similarity=0.470 Sum_probs=66.5
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.+.++|||+|||+++++++|+++|++||.|.+++++++ ++|||||+|.+.++|+++.. ....+.|++|+|.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a 75 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-----FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNA 75 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-----CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-----CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEec
Confidence 45789999999999999999999999999999999765 68999999999999986544 234568999999998
Q ss_pred ccCC
Q 024258 93 KYGP 96 (270)
Q Consensus 93 ~~~~ 96 (270)
.++.
T Consensus 76 ~~~~ 79 (88)
T 1wf0_A 76 EPKH 79 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8544
No 176
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.61 E-value=1.6e-15 Score=123.43 Aligned_cols=81 Identities=35% Similarity=0.524 Sum_probs=75.7
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE--EEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE--ITV 89 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~--I~V 89 (270)
....++|||+|||+++++++|+++|++||.|.++++..++.+|+++|||||+|.+.++|++|++.|||..+.|+. |+|
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v 164 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITV 164 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEE
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEE
Confidence 345689999999999999999999999999999999999889999999999999999999999999999999965 888
Q ss_pred EEc
Q 024258 90 QFA 92 (270)
Q Consensus 90 ~~a 92 (270)
+||
T Consensus 165 ~~A 167 (167)
T 1fxl_A 165 KFA 167 (167)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 177
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.6e-15 Score=115.11 Aligned_cols=74 Identities=31% Similarity=0.425 Sum_probs=65.7
Q ss_pred CCCcE-EEEcCCCCCCCHHH----HHHhhccC-CCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 13 TDTYS-LLVLNITFRTTADD----LFPLFDKY-GKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 13 ~~~~~-lfVgnLp~~~te~d----L~~~F~~~-G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
.+..+ |||+|||+++++++ |+++|++| |+|.+| ++ |+|||.|.+.++|++|++.|||..+.||+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 34555 99999999999987 56899999 599998 33 99999999999999999999999999999
Q ss_pred EEEEEcccCC
Q 024258 87 ITVQFAKYGP 96 (270)
Q Consensus 87 I~V~~a~~~~ 96 (270)
|+|++++.++
T Consensus 76 i~v~~A~~~s 85 (96)
T 2diu_A 76 IIVSFTPKNR 85 (96)
T ss_dssp CEEESSCCSC
T ss_pred EEEEecCCCc
Confidence 9999998543
No 178
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.60 E-value=4.9e-15 Score=124.28 Aligned_cols=76 Identities=25% Similarity=0.486 Sum_probs=66.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccC----C-------CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCee
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKY----G-------KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~----G-------~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~ 81 (270)
...++|||+|||+++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|++|+ .|||..
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~ 74 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGII 74 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEE
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCE
Confidence 356899999999999999999999999 5 5666655 456899999999999999999 799999
Q ss_pred EeccEEEEEEcccC
Q 024258 82 VDGREITVQFAKYG 95 (270)
Q Consensus 82 l~Gr~I~V~~a~~~ 95 (270)
+.|+.|+|.++...
T Consensus 75 ~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 75 FQGQSLKIRRPHDY 88 (198)
T ss_dssp ETTEEEEEECCCCC
T ss_pred EcCceEEEeCCCCC
Confidence 99999999998643
No 179
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.60 E-value=3.8e-15 Score=118.96 Aligned_cols=79 Identities=25% Similarity=0.324 Sum_probs=69.5
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccE-EEEEEcCHHHHHHHHHhcCCeeEec--cEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGF-AFVRYKYADEAQKAVDRLDGRVVDG--REIT 88 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~-aFV~F~s~e~A~~Al~~Lng~~l~G--r~I~ 88 (270)
+.....|||+||++.+++++|+++|++||.|.+|.+... .|| |||+|.+.++|+.|++.|||..+.| +.|+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~------~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~ 95 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR------NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLK 95 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES------SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEE
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEE
Confidence 344556789999999999999999999999999998642 286 9999999999999999999999987 6999
Q ss_pred EEEcccCC
Q 024258 89 VQFAKYGP 96 (270)
Q Consensus 89 V~~a~~~~ 96 (270)
|++++++.
T Consensus 96 V~~Ak~~~ 103 (124)
T 2e5i_A 96 IEYARPTR 103 (124)
T ss_dssp EECCSCSC
T ss_pred EEEecCCc
Confidence 99998543
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.60 E-value=2.3e-15 Score=129.54 Aligned_cols=78 Identities=22% Similarity=0.364 Sum_probs=72.6
Q ss_pred CCCcEEEEcCCC-CCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 13 TDTYSLLVLNIT-FRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 13 ~~~~~lfVgnLp-~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.++++|||+||| +++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|++|++.|||..+.|+.|+|.+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~ 76 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCV 76 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 357899999999 89999999999999999999999876 389999999999999999999999999999999999
Q ss_pred cccC
Q 024258 92 AKYG 95 (270)
Q Consensus 92 a~~~ 95 (270)
++.+
T Consensus 77 s~~~ 80 (205)
T 3tyt_A 77 SKQP 80 (205)
T ss_dssp CSCS
T ss_pred ccCC
Confidence 8743
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.60 E-value=3.5e-15 Score=132.71 Aligned_cols=84 Identities=25% Similarity=0.495 Sum_probs=77.0
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHH----HhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc
Q 024258 10 PDITDTYSLLVLNITFRTTADDLF----PLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR 85 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~----~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr 85 (270)
++..+.++|||+|||+++++++|+ ++|++||.|.+|++.+ +++++|||||+|.+.++|++|++.|||..+.|+
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 455678999999999999999976 8999999999999875 688999999999999999999999999999999
Q ss_pred EEEEEEcccCC
Q 024258 86 EITVQFAKYGP 96 (270)
Q Consensus 86 ~I~V~~a~~~~ 96 (270)
.|+|++++.+.
T Consensus 81 ~l~v~~a~~~~ 91 (282)
T 3pgw_A 81 PMRIQYAKTDS 91 (282)
T ss_pred EEEEEEeccCc
Confidence 99999997544
No 182
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=1.7e-15 Score=120.01 Aligned_cols=81 Identities=26% Similarity=0.398 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 10 PDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
....+.++|||+|+ ++++++|+++|++||.|.+|.+. +++|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 34 ~~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~------~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V 105 (121)
T 2bz2_A 34 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD------PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKV 105 (121)
T ss_dssp -CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE------TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe------CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34456899999995 79999999999999999999985 46899999999999999999999999999999999
Q ss_pred EEcccCCch
Q 024258 90 QFAKYGPNA 98 (270)
Q Consensus 90 ~~a~~~~~~ 98 (270)
+++++++..
T Consensus 106 ~~a~~~~~~ 114 (121)
T 2bz2_A 106 NIARKQPML 114 (121)
T ss_dssp EECCSSCC-
T ss_pred EEeCCCCCC
Confidence 999865433
No 183
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.60 E-value=2.6e-15 Score=123.94 Aligned_cols=80 Identities=24% Similarity=0.507 Sum_probs=73.8
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
...+.++|||+|||+++++++|+++|++||.|..+ ..+++++|||||+|.+.++|++|++.|||..+.|+.|+|+
T Consensus 95 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~ 169 (175)
T 1fje_B 95 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 169 (175)
T ss_dssp TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEE
T ss_pred ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567899999999999999999999999988776 4688999999999999999999999999999999999999
Q ss_pred EcccC
Q 024258 91 FAKYG 95 (270)
Q Consensus 91 ~a~~~ 95 (270)
++.++
T Consensus 170 ~a~~k 174 (175)
T 1fje_B 170 YTGEK 174 (175)
T ss_dssp ECSSC
T ss_pred ecCCC
Confidence 99864
No 184
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.60 E-value=2e-15 Score=123.96 Aligned_cols=82 Identities=26% Similarity=0.401 Sum_probs=75.2
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe---ccEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD---GREI 87 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~---Gr~I 87 (270)
.....++|||+|||+++++++|+++|++||.|.++.+.+++ +|+++|||||+|.+.++|++|++.|||..+. +++|
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l 169 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPM 169 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCC
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCe
Confidence 34467899999999999999999999999999999999985 6999999999999999999999999999875 4999
Q ss_pred EEEEcc
Q 024258 88 TVQFAK 93 (270)
Q Consensus 88 ~V~~a~ 93 (270)
+|+|+.
T Consensus 170 ~V~~ad 175 (175)
T 3nmr_A 170 VVKFAD 175 (175)
T ss_dssp EEEECC
T ss_pred EEEecC
Confidence 999873
No 185
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.59 E-value=3.8e-15 Score=133.11 Aligned_cols=83 Identities=19% Similarity=0.307 Sum_probs=71.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQF 91 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~ 91 (270)
.+.++|||+|||+++++++|+++|++|| .|.++.+++++. |+++|||||+|.+.++|++|++.|||..+.|+.|.|.+
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 193 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKV 193 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 3578999999999999999999999999 999999999864 88999999999999999999999999999999999999
Q ss_pred cccCC
Q 024258 92 AKYGP 96 (270)
Q Consensus 92 a~~~~ 96 (270)
+.+..
T Consensus 194 a~~~~ 198 (292)
T 2ghp_A 194 SNPLE 198 (292)
T ss_dssp CCCC-
T ss_pred CCCCc
Confidence 87544
No 186
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.57 E-value=1.1e-14 Score=112.77 Aligned_cols=82 Identities=26% Similarity=0.270 Sum_probs=73.4
Q ss_pred CCCcEEEEcCCCC-----CCCHHHHHHhhccCCCeEEEEEcccCCC-CCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 13 TDTYSLLVLNITF-----RTTADDLFPLFDKYGKVVDIFIPRDRRT-GDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 13 ~~~~~lfVgnLp~-----~~te~dL~~~F~~~G~I~~v~i~~d~~t-g~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
.+++.|+++|+.. +-++++|++.|++||.|.++.+.+++.+ ++++|||||+|.+.++|++|++.|||..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4678999999963 2378999999999999999999998654 689999999999999999999999999999999
Q ss_pred EEEEEccc
Q 024258 87 ITVQFAKY 94 (270)
Q Consensus 87 I~V~~a~~ 94 (270)
|+|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999874
No 187
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.56 E-value=9.7e-15 Score=130.45 Aligned_cols=84 Identities=20% Similarity=0.382 Sum_probs=76.6
Q ss_pred CCCCCcEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEcccCC-CCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 11 DITDTYSLLVLNITFR-TTADDLFPLFDKYGKVVDIFIPRDRR-TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~i~~d~~-tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
.....++|||+|||++ +++++|+++|++||.|.++++++++. ||+++|||||+|.+.++|++|+ .|||..+.|+.|+
T Consensus 206 ~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~ 284 (292)
T 2ghp_A 206 ATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREIS 284 (292)
T ss_dssp -CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEE
T ss_pred cCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEE
Confidence 3456789999999999 99999999999999999999999876 6999999999999999999999 8999999999999
Q ss_pred EEEcccC
Q 024258 89 VQFAKYG 95 (270)
Q Consensus 89 V~~a~~~ 95 (270)
|.++.++
T Consensus 285 V~~a~~k 291 (292)
T 2ghp_A 285 VSLADKK 291 (292)
T ss_dssp EEECCCC
T ss_pred EEEecCC
Confidence 9999865
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.55 E-value=1.1e-14 Score=129.56 Aligned_cols=89 Identities=22% Similarity=0.339 Sum_probs=81.4
Q ss_pred CCCCCCcEEEEcCCCCCC-CHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 10 PDITDTYSLLVLNITFRT-TADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 10 ~~~~~~~~lfVgnLp~~~-te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
....+.++|||+|||+++ ++++|+++|++||.|.++.+..++ +|+++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 179 ~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 257 (284)
T 3smz_A 179 PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLR 257 (284)
T ss_dssp TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEE
Confidence 344567899999999995 999999999999999999999986 899999999999999999999999999999999999
Q ss_pred EEEcccCCchh
Q 024258 89 VQFAKYGPNAE 99 (270)
Q Consensus 89 V~~a~~~~~~~ 99 (270)
|.++.++....
T Consensus 258 v~~a~~~~~~~ 268 (284)
T 3smz_A 258 VSFCAPGPPGR 268 (284)
T ss_dssp EEECCSSSCHH
T ss_pred EEEecCCCccc
Confidence 99998765543
No 189
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.55 E-value=1.3e-14 Score=123.90 Aligned_cols=77 Identities=21% Similarity=0.338 Sum_probs=71.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
.++|||+|||+++++++|+++|++||.|.+|++.+++ +++++|||||+|.+.++|++|++.+ +..++|+.|.|.++.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~ 185 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKD 185 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhH
Confidence 5899999999999999999999999999999999985 5999999999999999999999855 569999999999876
No 190
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.7e-14 Score=111.06 Aligned_cols=87 Identities=26% Similarity=0.436 Sum_probs=73.7
Q ss_pred CCCCCCCCCCcEEEEcCCCCCCC-----------HHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHH
Q 024258 6 RSGPPDITDTYSLLVLNITFRTT-----------ADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAV 74 (270)
Q Consensus 6 ~s~~~~~~~~~~lfVgnLp~~~t-----------e~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al 74 (270)
+.....+.++++|+|.||..... +++|+++|++||.|.+|.+ .++ .++|||||+|.+.++|++|+
T Consensus 6 ~~~~~~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~---~~~G~afV~f~~~~~A~~Ai 81 (112)
T 2dit_A 6 SGGPSRMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR---HPDGVASVSFRDPEEADYCI 81 (112)
T ss_dssp CSCCCCCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT---CTTCEEEEECSCHHHHHHHH
T ss_pred cCCCCCCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC---CCCEEEEEEECCHHHHHHHH
Confidence 34455667889999999954432 5899999999999999966 443 37999999999999999999
Q ss_pred HhcCCeeEeccEEEEEEcccCC
Q 024258 75 DRLDGRVVDGREITVQFAKYGP 96 (270)
Q Consensus 75 ~~Lng~~l~Gr~I~V~~a~~~~ 96 (270)
+.|||..++|+.|+|+++.++.
T Consensus 82 ~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 82 QTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp HHSTTCEETTEECEEEECCSCC
T ss_pred HHcCCCEECCcEEEEEEeCCCC
Confidence 9999999999999999998543
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.54 E-value=2e-14 Score=124.80 Aligned_cols=80 Identities=30% Similarity=0.428 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 11 DITDTYSLLVLNITF-RTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
...+.++|||+|||+ ++++++|+++|++||.|.+|++.+++ +|||||+|.+.++|++|++.|||..+.|+.|+|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 445689999999999 99999999999999999999998875 899999999999999999999999999999999
Q ss_pred EEcccC
Q 024258 90 QFAKYG 95 (270)
Q Consensus 90 ~~a~~~ 95 (270)
+++...
T Consensus 105 ~~a~~~ 110 (229)
T 2adc_A 105 TLSKHQ 110 (229)
T ss_dssp ECCSCC
T ss_pred EEecCc
Confidence 998754
No 192
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.53 E-value=9.1e-15 Score=129.09 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=71.8
Q ss_pred CCCCCcEEEEcCCCCCC---------CHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCee
Q 024258 11 DITDTYSLLVLNITFRT---------TADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV 81 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~---------te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~ 81 (270)
.....++|||+||++.+ +|++|+++|++||+|.+|+++.+ +|||||+|.+.++|+.|+++|+|..
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~------kG~AFV~F~~~~~Ae~A~~am~g~~ 203 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES------KNCGFVKFKYQANAEFAKEAMSNQT 203 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG------GTEEEEEESSHHHHHHHHHHHTTCC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC------CCEEEEEeCCHHHHHHHHHHhCCCE
Confidence 45678999999999998 79999999999999999999864 8999999999999999999999999
Q ss_pred E------------eccEEEEEEcccCCch
Q 024258 82 V------------DGREITVQFAKYGPNA 98 (270)
Q Consensus 82 l------------~Gr~I~V~~a~~~~~~ 98 (270)
+ .|+.|.|+|++..++.
T Consensus 204 l~~~~~~e~~~~~~gr~L~V~wA~~~pnp 232 (240)
T 3u1l_A 204 LLLPSDKEWDDRREGTGLLVKWANEDPDP 232 (240)
T ss_dssp CCCTTSTTGGGGGGSCCCEEEECC-----
T ss_pred EeccccccccccCCCCEEEEEEccCCCCH
Confidence 9 8999999999866543
No 193
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.50 E-value=8.6e-14 Score=123.68 Aligned_cols=77 Identities=23% Similarity=0.317 Sum_probs=71.9
Q ss_pred CCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe-ccEEEEE
Q 024258 12 ITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (270)
Q Consensus 12 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~-Gr~I~V~ 90 (270)
..+.++|||+|||+++++++|+++|++||.|.++++..++ +|||||+|.+.++|++|++.|||..+. |+.|+|+
T Consensus 204 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 278 (282)
T 3pgw_A 204 NPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-----HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKIS 278 (282)
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-----CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEE
Confidence 3467899999999999999999999999999999998664 689999999999999999999999999 9999999
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
|++
T Consensus 279 ~ak 281 (282)
T 3pgw_A 279 FAK 281 (282)
T ss_pred Eec
Confidence 986
No 194
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.49 E-value=2.6e-14 Score=120.48 Aligned_cols=77 Identities=31% Similarity=0.462 Sum_probs=72.5
Q ss_pred CCcEEEEcCCCC-CCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEc
Q 024258 14 DTYSLLVLNITF-RTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFA 92 (270)
Q Consensus 14 ~~~~lfVgnLp~-~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a 92 (270)
.+++|||+|||+ ++++++|+++|++||.|.+|++.+++ +|||||+|.+.++|++|++.|||..+.|+.|+|.++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a 76 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLS 76 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEEC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEe
Confidence 468999999999 99999999999999999999998875 889999999999999999999999999999999998
Q ss_pred ccC
Q 024258 93 KYG 95 (270)
Q Consensus 93 ~~~ 95 (270)
...
T Consensus 77 ~~~ 79 (198)
T 1qm9_A 77 KHQ 79 (198)
T ss_dssp CCC
T ss_pred cCC
Confidence 754
No 195
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.45 E-value=1.1e-13 Score=118.95 Aligned_cols=78 Identities=12% Similarity=0.254 Sum_probs=69.6
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCe--EEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEecc----E
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKV--VDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGR----E 86 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I--~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr----~ 86 (270)
.++++|||+|||+++++++|+++|++||.| .++++..++ ++++|||||+|.+.++|.+|+..|||..+.|+ +
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p 198 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYP 198 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSC
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcc
Confidence 346789999999999999999999999999 899998774 56679999999999999999999999999876 5
Q ss_pred EEEEEc
Q 024258 87 ITVQFA 92 (270)
Q Consensus 87 I~V~~a 92 (270)
+.|+++
T Consensus 199 ~~vk~~ 204 (205)
T 3tyt_A 199 YTLKLC 204 (205)
T ss_dssp EECEEE
T ss_pred eEEEec
Confidence 777664
No 196
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.44 E-value=1.5e-13 Score=121.60 Aligned_cols=81 Identities=22% Similarity=0.269 Sum_probs=73.8
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCee-Ee---ccEEEE
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRV-VD---GREITV 89 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~-l~---Gr~I~V 89 (270)
+.++|||+|||+.+++++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|++.||+.. +. +++|.|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4679999999999999999999999999999999999 589999999999999999999999995544 43 999999
Q ss_pred EEcccC
Q 024258 90 QFAKYG 95 (270)
Q Consensus 90 ~~a~~~ 95 (270)
+++.+.
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998743
No 197
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.44 E-value=2.1e-13 Score=114.90 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=71.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe-ccEEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~-Gr~I~V~ 90 (270)
.+.++|||+|||+++++++|+++|++|| .|.++++..+ .+|||||+|.+.++|++|++.|||..+. |+.|+|.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~ 192 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 192 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-----TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-----CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEE
Confidence 4578999999999999999999999999 9999999764 2799999999999999999999999999 9999999
Q ss_pred Eccc
Q 024258 91 FAKY 94 (270)
Q Consensus 91 ~a~~ 94 (270)
|+++
T Consensus 193 ~a~~ 196 (198)
T 1qm9_A 193 FSKS 196 (198)
T ss_dssp EECC
T ss_pred eecc
Confidence 9875
No 198
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=3.8e-14 Score=109.42 Aligned_cols=72 Identities=19% Similarity=0.381 Sum_probs=64.2
Q ss_pred EcCCCCCCCHHHHHHhh------------ccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 20 VLNITFRTTADDLFPLF------------DKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 20 VgnLp~~~te~dL~~~F------------~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
+.||++.+++++|++.| ++||.|.++.+.+++ +++++|||||+|.+.++|++|++.|||..+.||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~-~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS-SSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC-CCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777777887777666 999999999999885 48999999999999999999999999999999999
Q ss_pred EEEEc
Q 024258 88 TVQFA 92 (270)
Q Consensus 88 ~V~~a 92 (270)
+|+++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 199
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=3.2e-13 Score=104.39 Aligned_cols=82 Identities=27% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCCcEEEEcCC--CCCCC--------HHHHHHhhccCCCeEEEEEcccCCC--CCcccEEEEEEcCHHHHHHHHHhcCCe
Q 024258 13 TDTYSLLVLNI--TFRTT--------ADDLFPLFDKYGKVVDIFIPRDRRT--GDSRGFAFVRYKYADEAQKAVDRLDGR 80 (270)
Q Consensus 13 ~~~~~lfVgnL--p~~~t--------e~dL~~~F~~~G~I~~v~i~~d~~t--g~skG~aFV~F~s~e~A~~Al~~Lng~ 80 (270)
.+++.|.+.|+ +.... +++|++.|++||.|.++.+++++.+ ++++||+||+|.+.++|++|++.|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 35788999998 33443 3689999999999999999988755 478999999999999999999999999
Q ss_pred eEeccEEEEEEccc
Q 024258 81 VVDGREITVQFAKY 94 (270)
Q Consensus 81 ~l~Gr~I~V~~a~~ 94 (270)
.+.||.|+|.++..
T Consensus 83 ~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 83 KFANRVVVTKYCDP 96 (105)
T ss_dssp EETTEECEEEEECH
T ss_pred EeCCCEEEEEEeCH
Confidence 99999999999863
No 200
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.42 E-value=4.5e-13 Score=116.26 Aligned_cols=77 Identities=23% Similarity=0.301 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCC-CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe-ccEEEEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYG-KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD-GREITVQ 90 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G-~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~-Gr~I~V~ 90 (270)
.+.++|||+|||+++++++|+++|++|| .|.++++..+ ++|||||+|.+.++|++|++.|||..+. |+.|+|+
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~ 223 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVS 223 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEE
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEE
Confidence 3478999999999999999999999999 9999999653 3799999999999999999999999999 9999999
Q ss_pred Eccc
Q 024258 91 FAKY 94 (270)
Q Consensus 91 ~a~~ 94 (270)
|+++
T Consensus 224 ~a~~ 227 (229)
T 2adc_A 224 FSKS 227 (229)
T ss_dssp ECSS
T ss_pred EecC
Confidence 9875
No 201
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.38 E-value=8.5e-13 Score=104.28 Aligned_cols=81 Identities=20% Similarity=0.352 Sum_probs=71.6
Q ss_pred CCcEEEEcCCCC--CC---CHHHHHHhhccCCCeEEEEEcccCC----CCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 14 DTYSLLVLNITF--RT---TADDLFPLFDKYGKVVDIFIPRDRR----TGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 14 ~~~~lfVgnLp~--~~---te~dL~~~F~~~G~I~~v~i~~d~~----tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
+++.|++.|+-. ++ -++||++.|++||.|.+|.+++++. +++++||+||+|.+.++|++|++.|||..+.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 678999999832 22 3689999999999999999998864 46788999999999999999999999999999
Q ss_pred cEEEEEEccc
Q 024258 85 REITVQFAKY 94 (270)
Q Consensus 85 r~I~V~~a~~ 94 (270)
|.|+|.++..
T Consensus 99 R~i~v~~~~~ 108 (118)
T 3ue2_A 99 RKVVAEVYDQ 108 (118)
T ss_dssp EECEEEEECH
T ss_pred cEEEEEEcCh
Confidence 9999999863
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=4.7e-12 Score=97.16 Aligned_cols=75 Identities=23% Similarity=0.309 Sum_probs=63.5
Q ss_pred CcEEEEcCCC-------CCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 15 TYSLLVLNIT-------FRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 15 ~~~lfVgnLp-------~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.+++-|.-.. ..+++++|+++|++||.|.+|.++ ++++|||||+|.+.++|+.|++.+++ +.|++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~-----~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l 82 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS-----SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPL 82 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE-----SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBC
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc-----cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeE
Confidence 5567776543 458999999999999999999987 46799999999999999999997554 679999
Q ss_pred EEEEcccCC
Q 024258 88 TVQFAKYGP 96 (270)
Q Consensus 88 ~V~~a~~~~ 96 (270)
+|+|+++++
T Consensus 83 ~V~~a~~~~ 91 (100)
T 2d9o_A 83 KISWLEGQP 91 (100)
T ss_dssp EEECSSCCC
T ss_pred EEEEccCCC
Confidence 999988554
No 203
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.32 E-value=3.1e-12 Score=118.39 Aligned_cols=77 Identities=27% Similarity=0.537 Sum_probs=67.2
Q ss_pred CCCCCcEEEEcC--CCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEe---cc
Q 024258 11 DITDTYSLLVLN--ITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVD---GR 85 (270)
Q Consensus 11 ~~~~~~~lfVgn--Lp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~---Gr 85 (270)
...++.+|||+| |++.++|++|+++|++||+|.+|.+.. +||||||+|.+.++|++|++.|||.++. |+
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~------~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP------NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT------TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC------CCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 356778999999 589999999999999999999998754 4799999999999999999999999983 44
Q ss_pred --EEEEEEcc
Q 024258 86 --EITVQFAK 93 (270)
Q Consensus 86 --~I~V~~a~ 93 (270)
.+.+.+..
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 57788875
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.23 E-value=3.6e-11 Score=94.39 Aligned_cols=78 Identities=24% Similarity=0.388 Sum_probs=66.6
Q ss_pred CCCcEEEEcCCCCCC----------CHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeE
Q 024258 13 TDTYSLLVLNITFRT----------TADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVV 82 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~----------te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l 82 (270)
.+++.|.+.|+=..- -++||++.|++||.|.++.+.++. ++||+||+|.+.++|++|++.|||..+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~----~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS----AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC----TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC----CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 456789999983322 125889999999999999997653 599999999999999999999999999
Q ss_pred eccEEEEEEccc
Q 024258 83 DGREITVQFAKY 94 (270)
Q Consensus 83 ~Gr~I~V~~a~~ 94 (270)
+||.|+|+++..
T Consensus 81 ~GR~i~v~~~~~ 92 (114)
T 3s6e_A 81 AGKMITAAYVPL 92 (114)
T ss_dssp TTEECEEEEECH
T ss_pred CCEEEEEEEEcH
Confidence 999999999864
No 205
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=1.2e-09 Score=86.61 Aligned_cols=80 Identities=20% Similarity=0.162 Sum_probs=70.8
Q ss_pred CCCCCCCCcEEEEcCCCCC-CCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcC-HHHHHHHHHhcC--CeeEe
Q 024258 8 GPPDITDTYSLLVLNITFR-TTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKY-ADEAQKAVDRLD--GRVVD 83 (270)
Q Consensus 8 ~~~~~~~~~~lfVgnLp~~-~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s-~e~A~~Al~~Ln--g~~l~ 83 (270)
+.-....++-|||+||++. +++++|+++|++||+|..|.+.++.. .|||+|.+ .++|..|++++| +..|.
T Consensus 11 ~~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~------tgfVrf~~~~~~A~~av~~ln~~~~~i~ 84 (121)
T 1owx_A 11 GSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK------EGIILFKEKAKEALGKAKDANNGNLQLR 84 (121)
T ss_dssp CCCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS------EEEEEESSCHHHHHHHHHHTTTSCBCTT
T ss_pred CcccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC------EEEEEECCChHHHHHHHHHhhcCCcEEe
Confidence 3456678999999999999 99999999999999999999988853 59999999 899999999995 67789
Q ss_pred ccEEEEEEcc
Q 024258 84 GREITVQFAK 93 (270)
Q Consensus 84 Gr~I~V~~a~ 93 (270)
|..++++...
T Consensus 85 g~~~~~evL~ 94 (121)
T 1owx_A 85 NKEVTWEVLE 94 (121)
T ss_dssp SSSEEEEECC
T ss_pred CcEEEEEECC
Confidence 9998888765
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.97 E-value=1.9e-09 Score=80.95 Aligned_cols=72 Identities=22% Similarity=0.328 Sum_probs=62.2
Q ss_pred CcEEEEcCCC----CCCCH----HHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccE
Q 024258 15 TYSLLVLNIT----FRTTA----DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGRE 86 (270)
Q Consensus 15 ~~~lfVgnLp----~~~te----~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~ 86 (270)
.-+|+|.-.+ .++.. .+|.+.|++||+|..++++.|+ +||+|.+.++|.+|++ |||..+.||.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--------~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--------MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--------EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--------EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 4588888776 23433 5799999999999999999873 8999999999999998 9999999999
Q ss_pred EEEEEcccC
Q 024258 87 ITVQFAKYG 95 (270)
Q Consensus 87 I~V~~a~~~ 95 (270)
|+|+.+.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998743
No 207
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.85 E-value=4e-09 Score=90.72 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=60.7
Q ss_pred CCHHHHHHhhccCCCeEEEEEcccC----CCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcc
Q 024258 27 TTADDLFPLFDKYGKVVDIFIPRDR----RTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAK 93 (270)
Q Consensus 27 ~te~dL~~~F~~~G~I~~v~i~~d~----~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~ 93 (270)
-.+++|++.|++||.|.++.+.++. .+++++|++||+|.+.++|++|++.|||..+.||.|.+.++.
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 3567899999999999999998554 455999999999999999999999999999999999999976
No 208
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.9e-08 Score=75.91 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=61.0
Q ss_pred CCcEEEEcCCCCC-----CCH----HHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 14 DTYSLLVLNITFR-----TTA----DDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 14 ~~~~lfVgnLp~~-----~te----~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
+.-+|+|.-++.. +.. .+|.+.|++||+|..+++..|+ +||+|.+.++|.+|++ |||..+.|
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--------~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--------MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--------EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--------EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 3458999988743 222 4689999999999999999883 9999999999999998 99999999
Q ss_pred cEEEEEEcc
Q 024258 85 REITVQFAK 93 (270)
Q Consensus 85 r~I~V~~a~ 93 (270)
|.|+|++..
T Consensus 85 r~L~V~~k~ 93 (95)
T 1ufw_A 85 RAVKISGPS 93 (95)
T ss_dssp EEEEEECCC
T ss_pred eEEEEeccC
Confidence 999998754
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.06 E-value=1.9e-05 Score=61.06 Aligned_cols=74 Identities=12% Similarity=0.153 Sum_probs=67.2
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccC-----CCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEE
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKY-----GKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREIT 88 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~-----G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~ 88 (270)
..+++-+-|||..+++..++.+..++ |.+..+.+..| -|-|+|+|.+...|-+|.=+|+|.++.|++|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD------H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD------FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT------TTEEEEECSCHHHHHHHHHHHSSEEETTEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC------CCceEEEEccchhhHHHHhhcCCeeecCeEEE
Confidence 46788899999999999999999999 99999999888 46799999999999999878999999999999
Q ss_pred EEEcc
Q 024258 89 VQFAK 93 (270)
Q Consensus 89 V~~a~ 93 (270)
+.-..
T Consensus 94 ~gTv~ 98 (117)
T 2l9w_A 94 SGTIN 98 (117)
T ss_dssp EECHH
T ss_pred ecCHH
Confidence 97654
No 210
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=97.79 E-value=0.00011 Score=59.20 Aligned_cols=34 Identities=12% Similarity=0.022 Sum_probs=27.9
Q ss_pred EEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 024258 44 DIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (270)
Q Consensus 44 ~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng 79 (270)
+++++++. .+++|||||+|.+.++|++|++.+++
T Consensus 2 ~~kl~ln~--~~~~G~~fV~f~~~~~A~~al~~~~~ 35 (158)
T 2kn4_A 2 QYKLILNG--KTLKGETTTEAVDAATAEKVFKQYAN 35 (158)
T ss_dssp EEEEEEEC--SSCEEEEEEECSSHHHHHHHHHHHHH
T ss_pred cEEEEecC--ccccchhHHHHHHHHhHHHHHHhhcc
Confidence 45666664 36999999999999999999987664
No 211
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.0027 Score=48.36 Aligned_cols=74 Identities=11% Similarity=0.130 Sum_probs=61.7
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhcc-----CCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEE
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDK-----YGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREI 87 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~-----~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I 87 (270)
.-..+|.|.|||+.++++.|+-+|+. -|+|.+++... +-|+|+|.+.+.+++.++. ..+.+++..+
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--------~~AvItF~d~~va~rVL~k-~~H~L~~~~L 76 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--------CGGVLTFREPADAERVLAQ-ADHELHGAQL 76 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--------TEEEEEESSHHHHHHHHTC-SCCBSSSSBC
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--------CcEEEEEcChHHHHHHhcC-CcceecCeEE
Confidence 44679999999999999999999986 26888887643 4799999999999999983 4788999999
Q ss_pred EEEEcccC
Q 024258 88 TVQFAKYG 95 (270)
Q Consensus 88 ~V~~a~~~ 95 (270)
.|....+.
T Consensus 77 sV~P~~~~ 84 (104)
T 2dhx_A 77 SLRPAPPR 84 (104)
T ss_dssp EEEECCCC
T ss_pred EEEcCCCC
Confidence 99776543
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.27 E-value=0.0011 Score=49.57 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=56.7
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCC--cccEEEEEEcCHHHHHHHHHhcCCeeEe
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGD--SRGFAFVRYKYADEAQKAVDRLDGRVVD 83 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~--skG~aFV~F~s~e~A~~Al~~Lng~~l~ 83 (270)
++|.|++||+.++|+++.+.++...++........+.+.+ .-+-|||.|.+.+++..-.+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 5899999999999999999999988877666655544332 3357999999999999999999999984
No 213
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.13 E-value=0.00065 Score=51.91 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=62.2
Q ss_pred CcEEEEcCCCCCC-C----HHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEE
Q 024258 15 TYSLLVLNITFRT-T----ADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITV 89 (270)
Q Consensus 15 ~~~lfVgnLp~~~-t----e~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V 89 (270)
.++|+|.||+.++ . .+.++++|..|+++......+.- .-.-|.|.++++|.+|-..||+..+.|++++|
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF------RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF------KRVRINFSNPLSAADARLRLHKTEFLGKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT------TEEEEECSSTTHHHHHHHTSTTSEETTEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc------eEEEEEeCChHHHHHHHHHhccceecCceeEE
Confidence 3689999998866 2 25679999999998887766542 25789999999999999999999999999999
Q ss_pred EEccc
Q 024258 90 QFAKY 94 (270)
Q Consensus 90 ~~a~~ 94 (270)
.++.+
T Consensus 79 YFgq~ 83 (104)
T 1wey_A 79 YFAQT 83 (104)
T ss_dssp ECCCC
T ss_pred EecCC
Confidence 99884
No 214
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.94 E-value=0.0032 Score=47.50 Aligned_cols=60 Identities=25% Similarity=0.309 Sum_probs=48.9
Q ss_pred CCCCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 024258 9 PPDITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRL 77 (270)
Q Consensus 9 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~L 77 (270)
.......+-+++ +.|.++.-.||.++|+.||. ..|+++.|. .|||.|.+++.|..|+..+
T Consensus 10 d~~p~r~HVf~l-~FP~ewKt~DI~~lFs~fgg-v~I~WidDT-------sAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 10 DLQPKRDHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT-------SAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CCCCCCCSEEEE-ECCTTCCHHHHHHHHTTTCS-CCCEEEETT-------EEEEECSCHHHHHHHHHHH
T ss_pred CCCCCCCeEEEE-eCChhhhhHHHHHHhhccCC-EEEEEEcCC-------eEEEEecCHHHHHHHHHhc
Confidence 344445556666 99999999999999999994 467777663 7999999999999999865
No 215
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.75 E-value=0.0012 Score=52.66 Aligned_cols=41 Identities=24% Similarity=0.154 Sum_probs=37.1
Q ss_pred CCCcccEEEEEEcCHHHHHHHHHhc-CCeeEeccEEEEEEccc
Q 024258 53 TGDSRGFAFVRYKYADEAQKAVDRL-DGRVVDGREITVQFAKY 94 (270)
Q Consensus 53 tg~skG~aFV~F~s~e~A~~Al~~L-ng~~l~Gr~I~V~~a~~ 94 (270)
..+.+|+++++|.+.++|++|++.+ ||..++| .+.++++..
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 4577999999999999999999999 9999999 999988764
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.70 E-value=0.0035 Score=49.02 Aligned_cols=75 Identities=23% Similarity=0.364 Sum_probs=58.9
Q ss_pred CCCCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEec-cEEEE
Q 024258 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDG-REITV 89 (270)
Q Consensus 11 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~G-r~I~V 89 (270)
+....+-|-|-+.|+.. -+.+-..|++||.|.+.... ....+-.|.|.++.+|++||. .||..+.| -.|-|
T Consensus 20 ~~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV 91 (119)
T 1wwh_A 20 DHLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGV 91 (119)
T ss_dssp -CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEE
T ss_pred CCCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEE
Confidence 34456788888999886 46677789999999988762 124699999999999999998 59999975 66677
Q ss_pred EEcc
Q 024258 90 QFAK 93 (270)
Q Consensus 90 ~~a~ 93 (270)
.+..
T Consensus 92 ~p~~ 95 (119)
T 1wwh_A 92 KPCI 95 (119)
T ss_dssp EECC
T ss_pred EECC
Confidence 7754
No 217
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.37 E-value=0.016 Score=43.62 Aligned_cols=71 Identities=11% Similarity=0.049 Sum_probs=52.7
Q ss_pred CCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCC--cccEEEEEEcCHHHHHHHHHhcCCeeEec
Q 024258 14 DTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGD--SRGFAFVRYKYADEAQKAVDRLDGRVVDG 84 (270)
Q Consensus 14 ~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~--skG~aFV~F~s~e~A~~Al~~Lng~~l~G 84 (270)
.+-+|.|+.||+.+||+++.+.++..-++........+.+.+ .-..|||.|.+.++...-.+.++|..+.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 456899999999999999998888765543323322222221 22468999999999999999999999843
No 218
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.17 E-value=0.0072 Score=45.69 Aligned_cols=54 Identities=26% Similarity=0.350 Sum_probs=46.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLD 78 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Ln 78 (270)
+-+++ +.|.++.-.||.++|+.|| -..|+++.|. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT-------sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT-------SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT-------EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC-------eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 5677887773 79999999999999998654
No 219
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=94.90 E-value=0.011 Score=56.31 Aligned_cols=56 Identities=9% Similarity=0.216 Sum_probs=42.9
Q ss_pred CcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHh
Q 024258 15 TYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDR 76 (270)
Q Consensus 15 ~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~ 76 (270)
.++|||. .|..+++.+|.++|++||.|.++.+-.++ .-|+.|+|.+.+++.+++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-----SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-----CeEEEEEeCCHHHHHHHHhc
Confidence 4799997 79999999999999999999999886553 25999999999999988763
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.06 E-value=0.058 Score=42.75 Aligned_cols=76 Identities=16% Similarity=0.302 Sum_probs=54.1
Q ss_pred cEEEEcCCCCCCCHHHHHHhhccCCCeEE-EEEccc--------CCCC-----CcccEEEEEEcCHHHHHHHHHhcCCee
Q 024258 16 YSLLVLNITFRTTADDLFPLFDKYGKVVD-IFIPRD--------RRTG-----DSRGFAFVRYKYADEAQKAVDRLDGRV 81 (270)
Q Consensus 16 ~~lfVgnLp~~~te~dL~~~F~~~G~I~~-v~i~~d--------~~tg-----~skG~aFV~F~s~e~A~~Al~~Lng~~ 81 (270)
.-|.|=+.|++.+.. +-+.|++||.|.+ ....++ +.+. ....+-.|+|.+..+|++||+ .||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 456666887776644 5567999999865 222210 0001 134688999999999999998 59999
Q ss_pred EeccEEEEEEcc
Q 024258 82 VDGREITVQFAK 93 (270)
Q Consensus 82 l~Gr~I~V~~a~ 93 (270)
+.|..|-|.+..
T Consensus 86 i~G~mIGV~Py~ 97 (132)
T 3p3d_A 86 FNGVLLGVIPYT 97 (132)
T ss_dssp ETTEECEEEECC
T ss_pred eCcEEEEEEECC
Confidence 999988888875
No 221
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=88.49 E-value=0.33 Score=37.82 Aligned_cols=88 Identities=11% Similarity=0.122 Sum_probs=27.4
Q ss_pred EEEEEEcCHHHHHHHHHhcCCeeEeccEEEEEEcccCCchhhh---------------------------ccccccCCCC
Q 024258 59 FAFVRYKYADEAQKAVDRLDGRVVDGREITVQFAKYGPNAERI---------------------------KEGLLNHSRD 111 (270)
Q Consensus 59 ~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~~a~~~~~~~~~---------------------------~~~~~~~~~~ 111 (270)
+.|.+|++...+..|++.++|....|+. ...+..+.+..... ..........
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~ 84 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRY 84 (135)
T ss_dssp ------------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC
Confidence 6788999999999999999987765542 12222221111100 0001222334
Q ss_pred CCCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTN 147 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~ 147 (270)
.+..+|++|+.|.+....+.... ++|+.+.+..+.+
T Consensus 85 ~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~ 126 (135)
T 2lea_A 85 TKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARY 126 (135)
T ss_dssp SSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCC
T ss_pred CCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 56778999999996554444443 4455555555444
No 222
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=87.70 E-value=1.5 Score=42.03 Aligned_cols=58 Identities=26% Similarity=0.311 Sum_probs=47.0
Q ss_pred CCCcEEEEcCCCCCCCHHHHHHhhccCCCeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 024258 13 TDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDG 79 (270)
Q Consensus 13 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng 79 (270)
.+...++++ +|..+...+|.+.|+.||. .+|+++.+ ..|||.|.+.+.+..+++.++.
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd-------t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD-------TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS-------SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC-------CeEEEEECCHHHHHHHHHHHHh
Confidence 345566665 9999999999999999995 46766655 3799999999999999998753
No 223
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=80.87 E-value=0.59 Score=43.93 Aligned_cols=39 Identities=13% Similarity=0.076 Sum_probs=24.6
Q ss_pred CCCCCCcceEEEcCCchHHHHHHH-H-----hCCcEEEecccccc
Q 024258 110 RDRSTGQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIGTNV 148 (270)
Q Consensus 110 ~~~~~~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~~~~ 148 (270)
...+..+||+||.|.+......++ . ++|+.+.+..+..+
T Consensus 138 ~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 138 KRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred CCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCC
Confidence 346677899999999444433333 2 55667777665543
No 224
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=69.79 E-value=9.9 Score=26.85 Aligned_cols=41 Identities=10% Similarity=-0.030 Sum_probs=26.6
Q ss_pred CCCCCCCCcceEEEcCCchHHHHHHHH-------hCCcEEEecccccc
Q 024258 108 HSRDRSTGQGVAVLGEDTEMITEIEII-------EGGVTVEAGIGTNV 148 (270)
Q Consensus 108 ~~~~~~~~rg~~~v~~~~~~~~~~~~~-------~~G~~~~v~~~~~~ 148 (270)
.....+.++|++|+.|.+......... ++|+.+.+..+.++
T Consensus 36 ~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~ 83 (91)
T 2lxi_A 36 RNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPK 83 (91)
T ss_dssp SCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSC
T ss_pred ecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCC
Confidence 334556788999999995444333332 56777887766554
No 225
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=60.73 E-value=11 Score=27.07 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=22.9
Q ss_pred CCCCCCCcceEEEcCCch--HHHHHHHH--------hCCcEEEecccc
Q 024258 109 SRDRSTGQGVAVLGEDTE--MITEIEII--------EGGVTVEAGIGT 146 (270)
Q Consensus 109 ~~~~~~~rg~~~v~~~~~--~~~~~~~~--------~~G~~~~v~~~~ 146 (270)
+...++++|++|+.|.+. +..++..+ ++|+.+.+..++
T Consensus 46 d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Ak 93 (95)
T 2lkz_A 46 DKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAK 93 (95)
T ss_dssp CSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECC
T ss_pred cCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEcc
Confidence 344567889999999943 33333322 456677666544
No 226
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=56.79 E-value=14 Score=26.89 Aligned_cols=40 Identities=18% Similarity=0.153 Sum_probs=26.2
Q ss_pred CCCcceEEEcCCchH--HHHHHHH----hCCcEEEeccccccccCC
Q 024258 113 STGQGVAVLGEDTEM--ITEIEII----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~--~~~~~~~----~~G~~~~v~~~~~~~~~~ 152 (270)
.+.+|++|+.|.+.. ..++..+ ++|+.+.+..+.++....
T Consensus 60 ~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~~~~ 105 (111)
T 2cpi_A 60 QGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKYCSY 105 (111)
T ss_dssp SCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCSCSS
T ss_pred CCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEecccccccc
Confidence 356789999988433 3333333 678888888877766443
No 227
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=52.96 E-value=22 Score=24.16 Aligned_cols=68 Identities=16% Similarity=0.191 Sum_probs=40.8
Q ss_pred EEEEcC-CCCCCCHHHHHHhhccCC-----CeEEEEEcccCCCCCcccEEEEEEcCHHHHHHHHHhcCCeeEeccEEEEE
Q 024258 17 SLLVLN-ITFRTTADDLFPLFDKYG-----KVVDIFIPRDRRTGDSRGFAFVRYKYADEAQKAVDRLDGRVVDGREITVQ 90 (270)
Q Consensus 17 ~lfVgn-Lp~~~te~dL~~~F~~~G-----~I~~v~i~~d~~tg~skG~aFV~F~s~e~A~~Al~~Lng~~l~Gr~I~V~ 90 (270)
++||.. --..+...+|-.++..-+ .|-.+.+..+ |.||+-... .++.+++.|++..+.|+.+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d~--------~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~ 72 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMDN--------ASYVEILNG-KGPHVLKVMKNTTVKGKQLKVN 72 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEECSS--------CEEEEECTT-CHHHHHHHHTTCCC---CCCEE
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEeCC--------cEEEEECHH-HHHHHHHHhccccCcCceEEEE
Confidence 345531 223455666766666443 3556666433 899988754 5778888899999999999888
Q ss_pred Ecc
Q 024258 91 FAK 93 (270)
Q Consensus 91 ~a~ 93 (270)
.++
T Consensus 73 ~~~ 75 (76)
T 2g0c_A 73 KAN 75 (76)
T ss_dssp ECC
T ss_pred ECC
Confidence 764
No 228
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=52.56 E-value=33 Score=24.06 Aligned_cols=42 Identities=12% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCCCCcceEEEcCCchHHHHHHH--H----hCCcEEEeccccccccCC
Q 024258 111 DRSTGQGVAVLGEDTEMITEIEI--I----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 111 ~~~~~rg~~~v~~~~~~~~~~~~--~----~~G~~~~v~~~~~~~~~~ 152 (270)
..+..+|++|+.|.+....+... + ++|+.+.+..+.++....
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2cqb_A 49 ETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 96 (102)
T ss_dssp SSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCCCC
Confidence 34567899999999544443333 2 567777777666654443
No 229
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=51.82 E-value=13 Score=25.87 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=20.9
Q ss_pred CCCCcceEEEcCCchHHHHHHH-H-----hCCcEEEecccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIGTNV 148 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~~~~ 148 (270)
.++++|++|+.|.+....+... . ++|+.+.+..+.+.
T Consensus 41 ~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 41 NGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp TCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred CCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 4567899999999554444333 2 55666666655443
No 230
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.70 E-value=20 Score=24.83 Aligned_cols=42 Identities=14% Similarity=0.167 Sum_probs=26.2
Q ss_pred CCCcceEEEcCCchHHHHHHH--H----hCCcEEEeccccccccCCCC
Q 024258 113 STGQGVAVLGEDTEMITEIEI--I----EGGVTVEAGIGTNVTDTVGG 154 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~--~----~~G~~~~v~~~~~~~~~~gG 154 (270)
+..+|++|+.|.+........ + ++|+.+.+..+.++....++
T Consensus 44 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~~~~ 91 (95)
T 2dnz_A 44 GRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGSG 91 (95)
T ss_dssp CCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCCCCCC
T ss_pred CceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccCCCCC
Confidence 456788899888444333333 2 66777777777766555443
No 231
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=50.25 E-value=8.5 Score=30.37 Aligned_cols=39 Identities=15% Similarity=0.031 Sum_probs=22.9
Q ss_pred CCCCCCcceEEEcCCchHHHHHHHH------hCCcEEEecccccc
Q 024258 110 RDRSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNV 148 (270)
Q Consensus 110 ~~~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~ 148 (270)
...+..+|++|+.|.+.......+. ++|+.+.+..+.++
T Consensus 108 ~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 108 RRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp TTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEEC
T ss_pred CCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 3456678899999985443333332 45566666555443
No 232
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=47.79 E-value=22 Score=25.05 Aligned_cols=41 Identities=10% Similarity=0.036 Sum_probs=25.8
Q ss_pred CCCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccccccCC
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~~~ 152 (270)
.+..+|++|+.|.+......... ++|+.+.+..+.++....
T Consensus 50 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~~~ 96 (102)
T 2fc8_A 50 TGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGEGG 96 (102)
T ss_dssp SCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCSSS
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCCCC
Confidence 34578899999994444333332 566777777766655443
No 233
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=46.14 E-value=12 Score=26.90 Aligned_cols=34 Identities=15% Similarity=0.056 Sum_probs=19.6
Q ss_pred CCCCcceEEEcCCchHHHHHHH-H-----hCCcEEEeccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIG 145 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~ 145 (270)
.+..+|++|+.|.+........ . ++|+.+.+..+
T Consensus 57 tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 57 AGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp SCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567889999998444333333 2 44555555544
No 234
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=45.53 E-value=31 Score=24.21 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=25.5
Q ss_pred CCCCcceEEEcCCchHHHHHHH--H----hCCcEEEeccccccccCC
Q 024258 112 RSTGQGVAVLGEDTEMITEIEI--I----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~--~----~~G~~~~v~~~~~~~~~~ 152 (270)
.+..+|++|+.|.+........ + ++|+.+.+..+.++....
T Consensus 50 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 96 (102)
T 1x5s_A 50 TQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNR 96 (102)
T ss_dssp SCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCCCC
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCCC
Confidence 3457889999999544333333 2 567777777666655443
No 235
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.24 E-value=37 Score=23.79 Aligned_cols=39 Identities=8% Similarity=0.001 Sum_probs=25.1
Q ss_pred CCCCcceEEEcCCchHHHHHHHH------hCCcEEEecccccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~ 150 (270)
.+..+|++|+.|.+......... ++|+.+.+..+.++..
T Consensus 49 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 49 NGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp SSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred CCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 45678899999995444443333 5677777776665543
No 236
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.54 E-value=37 Score=24.36 Aligned_cols=41 Identities=7% Similarity=0.119 Sum_probs=25.6
Q ss_pred CCCCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccccccC
Q 024258 111 DRSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTDT 151 (270)
Q Consensus 111 ~~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~~ 151 (270)
..+..+|++|+.|.+......... ++|+.+.+..+.++...
T Consensus 60 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 60 ETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCCS
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCCC
Confidence 445678999999995443333332 55677777766655443
No 237
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=44.52 E-value=27 Score=24.56 Aligned_cols=37 Identities=16% Similarity=0.176 Sum_probs=22.6
Q ss_pred cceEEEcCCch--HHHHHHHH----hCCcEEEeccccccccCC
Q 024258 116 QGVAVLGEDTE--MITEIEII----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 116 rg~~~v~~~~~--~~~~~~~~----~~G~~~~v~~~~~~~~~~ 152 (270)
+|++|+.|.+. +..++..+ ++|+.+.+..+.++....
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~~~~ 94 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGASGPS 94 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSSCCC
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCCCC
Confidence 56788888743 33333333 667788888776655443
No 238
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=43.14 E-value=15 Score=25.34 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=22.9
Q ss_pred CCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccccccCC
Q 024258 113 STGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~~~ 152 (270)
+..+|++|+.|.+....+.... ++|+.+.+..+.+.....
T Consensus 45 g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 90 (92)
T 2dgv_A 45 GKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNASGPS 90 (92)
T ss_dssp SCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCSSCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCCCCC
Confidence 3567889999884443333332 556666666555544433
No 239
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.02 E-value=33 Score=24.01 Aligned_cols=39 Identities=13% Similarity=0.111 Sum_probs=23.5
Q ss_pred CCCCcceEEEcCCchHHHHHHHH-----hCCcEEEecccccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII-----EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~v~~~~~~~~ 150 (270)
.+..+|++|+.|.+......... ++|+.+.+..+.++..
T Consensus 48 ~~~~~g~afV~f~~~~~a~~A~~~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 48 KQRPRGFGFITFEDEQSVDQAVNMHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp TCSCCSEEEEEESSHHHHHHHHHHCCCBSSSCBCEEEECCCCCC
T ss_pred CCCCCceEEEEECCHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 34567899999885444443333 5566666666555443
No 240
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=42.39 E-value=45 Score=24.07 Aligned_cols=40 Identities=10% Similarity=0.119 Sum_probs=27.2
Q ss_pred CCCCcceEEEcCCchHHHHHHHH-----hCCcEEEeccccccccC
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII-----EGGVTVEAGIGTNVTDT 151 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~v~~~~~~~~~ 151 (270)
.+..+|++|+.|.+......... ++|+.+.+..+.++...
T Consensus 65 ~g~~~g~afV~f~~~~~a~~Ai~~~~~~~~g~~l~V~~a~~~~~~ 109 (116)
T 1x4b_A 65 SKRSRGFGFVTFSSMAEVDAAMAARPHSIDGRVVEPKRAVAREES 109 (116)
T ss_dssp TSSCCSEEEEECSSHHHHHHHHTSCSEEETTEEEEEECCSSCCCC
T ss_pred CCCcCceEEEEeCCHHHHHHHHHhCCcEECCEEEEEEECCCCccC
Confidence 34578899999996555444443 66777888877665544
No 241
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=41.30 E-value=37 Score=24.55 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=24.9
Q ss_pred CCCCcceEEEcCCchHHHHHHHH-----hCCcEEEeccccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII-----EGGVTVEAGIGTNVT 149 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~v~~~~~~~ 149 (270)
.+..+|++|+.|.+....+.... ++|+.+.+..+.++.
T Consensus 63 tg~~kg~afV~f~~~~~A~~Ai~~~~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 63 TKRSRGFGFVTFMDQAGVDKVLAQSRHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp TCCCTTCEEEEESSHHHHHHHHHSSCEEETTEEEEEEECCCCC
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHCCCcCCCEEEEEEEccCCC
Confidence 35678899999885555444443 667777777665543
No 242
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=40.98 E-value=45 Score=23.00 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=24.6
Q ss_pred CCCCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccccc
Q 024258 111 DRSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVT 149 (270)
Q Consensus 111 ~~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~ 149 (270)
..+..+|++|+.|.+....+.... ++|+.+.+..+.++.
T Consensus 43 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 43 DTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp TTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCC
T ss_pred CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccC
Confidence 445678999999995554444444 456666666555543
No 243
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=39.87 E-value=58 Score=22.57 Aligned_cols=39 Identities=10% Similarity=-0.127 Sum_probs=25.0
Q ss_pred CCCCcceEEEcCCchHHHHHHH-H-----hCCcEEEecccccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~~~~~~ 150 (270)
.+..+|++|+.|.+........ . ++|+.+.+..+.++..
T Consensus 46 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 46 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 4567889999998554444333 2 5677777776665544
No 244
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=39.40 E-value=24 Score=24.58 Aligned_cols=38 Identities=16% Similarity=0.115 Sum_probs=23.9
Q ss_pred CCCcceEEEcCCchHHHHHHHH------hCCcEEEecccccccc
Q 024258 113 STGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~ 150 (270)
+..+|++|+.|.+......... ++|+.+.+..+.++..
T Consensus 50 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 50 GKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 4567899999884443333333 5677777776655543
No 245
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=39.28 E-value=37 Score=24.86 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=27.1
Q ss_pred CCCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccccccCCCC
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTDTVGG 154 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~~~gG 154 (270)
.+..+|++|+.|.+....+.... ++|+.+.+..+.+.....++
T Consensus 44 ~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~~~ 92 (116)
T 2fy1_A 44 TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSFQSGG 92 (116)
T ss_dssp TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSCSSSS
T ss_pred CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCCCCCC
Confidence 35678999999995544443333 56677777766665544443
No 246
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.07 E-value=32 Score=24.34 Aligned_cols=40 Identities=8% Similarity=-0.007 Sum_probs=24.7
Q ss_pred CCCcceEEEcCCchHHHHHHHH-----hCCcEEEeccccccccCC
Q 024258 113 STGQGVAVLGEDTEMITEIEII-----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~v~~~~~~~~~~ 152 (270)
+..+|++|+.|.+......... ++|+.+.+..+.++....
T Consensus 55 g~~~g~afV~f~~~~~a~~a~~~~~~~~~g~~l~V~~a~~~~~~~ 99 (105)
T 2dh8_A 55 NQSRGFGFVKFKDPNCVGTVLASRPHTLDGRNIDPKPCTPRGMQP 99 (105)
T ss_dssp CCEEEEEEEEESSTTHHHHHHHHCSEEETTEEEBCCCSCCSSCCT
T ss_pred CCcceEEEEEECCHHHHHHHHHhCCCeECCEEEEEEEccCCCCCC
Confidence 4567889998884443333333 566777777666655443
No 247
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=38.05 E-value=41 Score=24.25 Aligned_cols=38 Identities=11% Similarity=0.128 Sum_probs=23.9
Q ss_pred CCCcceEEEcCCchHHHHHHH-H-----hCCcEEEecccccccc
Q 024258 113 STGQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~~~~~~ 150 (270)
+..+|++|+.|.+....+... . ++|+.+.+..+.++..
T Consensus 64 g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 64 NLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp CSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred CCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 456889999999544433333 2 5566777776665444
No 248
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=37.57 E-value=16 Score=26.90 Aligned_cols=34 Identities=21% Similarity=0.141 Sum_probs=20.7
Q ss_pred CcceEEEcCCchHHHH--HHHH----hCCcEEEecccccc
Q 024258 115 GQGVAVLGEDTEMITE--IEII----EGGVTVEAGIGTNV 148 (270)
Q Consensus 115 ~rg~~~v~~~~~~~~~--~~~~----~~G~~~~v~~~~~~ 148 (270)
++|++|+.|.+..... +..+ ++|+.+.+..+.++
T Consensus 44 ~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 44 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 4688999998444333 3333 56677777665544
No 249
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=37.46 E-value=42 Score=23.60 Aligned_cols=39 Identities=5% Similarity=-0.018 Sum_probs=26.6
Q ss_pred CCCcceEEEcCCchHHHHHHHH----hCCcEEEeccccccccC
Q 024258 113 STGQGVAVLGEDTEMITEIEII----EGGVTVEAGIGTNVTDT 151 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~----~~G~~~~v~~~~~~~~~ 151 (270)
+..+|++|+.|.+......... ++|+.+.+..+.++...
T Consensus 54 g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~l~v~~a~~~~~~ 96 (103)
T 2cqg_A 54 GHSKGFGFVRFTEYETQVKVMSQRHMIDGRWCDCKLPNSKQSQ 96 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHHHSCEEETTEEEEEECCCTTCCC
T ss_pred CCccceEEEEECCHHHHHHHHHcCCeeCCeEEEEEecCCCCcC
Confidence 4578899999985554444444 67888888877665443
No 250
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.76 E-value=37 Score=24.94 Aligned_cols=33 Identities=12% Similarity=-0.122 Sum_probs=20.4
Q ss_pred CCCcceEEEcCCchHHHHHHHH-----hCCcEEEeccc
Q 024258 113 STGQGVAVLGEDTEMITEIEII-----EGGVTVEAGIG 145 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~v~~~ 145 (270)
++.+|++|+.|.+....+.... ++|+.+++..+
T Consensus 53 g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~a 90 (109)
T 2dnn_A 53 GRNNGNGLVKFLSPQDTFEALKRNRMLMIQRYVEVSPA 90 (109)
T ss_dssp CCCCSEEEEECSSHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCeEEEEEECCHHHHHHHHhcCCCeECCeEEEEEEC
Confidence 5678999999995544444444 44555555443
No 251
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=36.54 E-value=46 Score=23.89 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=24.0
Q ss_pred CCCCcceEEEcCCchHHHHHHHH------hCCcEEEecccccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~ 150 (270)
.+..+|++|+.|.+......... ++|+.+.+..+.++..
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 107 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQ 107 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCCC
Confidence 34567899999995544443333 4566666666555443
No 252
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.15 E-value=37 Score=23.29 Aligned_cols=37 Identities=14% Similarity=0.061 Sum_probs=22.6
Q ss_pred CCCCcceEEEcCCchHHHHHHHH-----hCCcEEEecccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII-----EGGVTVEAGIGTNV 148 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~v~~~~~~ 148 (270)
.++.+|++|+.|.+......... ++|+.+.+..+.++
T Consensus 46 ~g~~~g~afV~f~~~~~a~~A~~~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 46 HGNKTGYIFVDFSNEEEVKQALKCNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp TSCEEEEEEEECSSHHHHHHHHHSCSEEETTEEEEEEEESSC
T ss_pred CCCCceEEEEEECCHHHHHHHHHhCCceeCCcEEEEEECCcC
Confidence 34568999999995544444443 45566666655443
No 253
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=35.38 E-value=40 Score=23.45 Aligned_cols=36 Identities=14% Similarity=0.152 Sum_probs=20.9
Q ss_pred CCCCcceEEEcCCchHHHHHHH-H-----hCCcEEEeccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIGTN 147 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~~~ 147 (270)
.+..+|++|+.|.+........ . ++|+.+.+..+.+
T Consensus 40 ~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 40 TGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp TCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 3466889999988444433333 2 4455555554444
No 254
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=35.08 E-value=33 Score=24.11 Aligned_cols=38 Identities=8% Similarity=-0.047 Sum_probs=22.9
Q ss_pred CCCcceEEEcCCchHHHHHHHH-----hCCcEEEecccccccc
Q 024258 113 STGQGVAVLGEDTEMITEIEII-----EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~v~~~~~~~~ 150 (270)
+.++|++|+.|.+......... ++|+.+.+..+.++..
T Consensus 55 g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 55 GTNRKFGYVDFESAEDLEKALELTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHGGGCCBTTBCCEEECCSCCCC
T ss_pred CCcCcEEEEEECCHHHHHHHHhcCCcEECCcEEEEEEcCCCCC
Confidence 4678899999884443333332 4566666666655443
No 255
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=34.87 E-value=23 Score=25.73 Aligned_cols=37 Identities=14% Similarity=0.126 Sum_probs=22.5
Q ss_pred CCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccccc
Q 024258 113 STGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVT 149 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~ 149 (270)
+..+|++|+.|.+......... ++|+.+.+..+.+++
T Consensus 65 g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 65 GRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp TEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 3567899999884444443332 556666666665543
No 256
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=34.71 E-value=28 Score=24.65 Aligned_cols=27 Identities=4% Similarity=-0.225 Sum_probs=16.5
Q ss_pred CCCCcceEEEcCCchHHHHHHHHhCCc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEIIEGGV 138 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~~~G~ 138 (270)
.++.+|++|+.|.+.........++|.
T Consensus 57 ~g~~~g~afV~f~~~~~a~~Ai~l~g~ 83 (100)
T 2j76_E 57 PERLKGFGYAEFEDLDSLLSALSLNEE 83 (100)
T ss_dssp TCCCCSCEEEEECCHHHHHHHHHTTTC
T ss_pred CCccCeEEEEEECCHHHHHHHHhcCCC
Confidence 456788899988854444433354443
No 257
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=34.57 E-value=54 Score=23.00 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=23.3
Q ss_pred CcceEEEcCCchHHHHHHH--H----hCCcEEEeccccccccCC
Q 024258 115 GQGVAVLGEDTEMITEIEI--I----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 115 ~rg~~~v~~~~~~~~~~~~--~----~~G~~~~v~~~~~~~~~~ 152 (270)
.+|++|+.|.+........ + ++|+.+.+..+.++....
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 97 (103)
T 2cq3_A 54 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVMTN 97 (103)
T ss_dssp TCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCCCC
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCCCC
Confidence 5788999888443333333 2 567777777666655443
No 258
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=33.38 E-value=26 Score=25.63 Aligned_cols=28 Identities=7% Similarity=-0.159 Sum_probs=16.9
Q ss_pred CCCCcceEEEcCCchHHHHHHH-HhCCcE
Q 024258 112 RSTGQGVAVLGEDTEMITEIEI-IEGGVT 139 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~-~~~G~~ 139 (270)
.++++|++|+.|.+....+... .++|..
T Consensus 44 tg~~rG~aFV~f~~~~~A~~Ai~~lng~~ 72 (110)
T 3s8s_A 44 TRKHLGLARVLFTSTRGAKETVKNLHLTS 72 (110)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCceeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 4567899999998444433333 345443
No 259
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=33.36 E-value=69 Score=22.40 Aligned_cols=35 Identities=9% Similarity=-0.020 Sum_probs=21.7
Q ss_pred CcceEEEcCCchHHHHHHH--H----hCCcEEEeccccccc
Q 024258 115 GQGVAVLGEDTEMITEIEI--I----EGGVTVEAGIGTNVT 149 (270)
Q Consensus 115 ~rg~~~v~~~~~~~~~~~~--~----~~G~~~~v~~~~~~~ 149 (270)
++|++|+.|.+........ + ++|+.+.+..+.++.
T Consensus 54 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 54 NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 4678999888444333333 2 567777777666543
No 260
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.80 E-value=50 Score=23.19 Aligned_cols=36 Identities=8% Similarity=0.075 Sum_probs=21.1
Q ss_pred CCCcceEEEcCC--chHHHHHHHH----hCCcEEEecccccc
Q 024258 113 STGQGVAVLGED--TEMITEIEII----EGGVTVEAGIGTNV 148 (270)
Q Consensus 113 ~~~rg~~~v~~~--~~~~~~~~~~----~~G~~~~v~~~~~~ 148 (270)
+..+|++|+.|. .++..++..+ ++|+.+.+..+...
T Consensus 52 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 52 KAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp CSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred CCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 456778888877 4444443333 55666666655543
No 261
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=32.73 E-value=49 Score=23.26 Aligned_cols=39 Identities=13% Similarity=0.048 Sum_probs=23.5
Q ss_pred CCCCcceEEEcCCchHHHHHHHH------hCCcEEEecccccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~ 150 (270)
.+..+|++|+.|.+......... ++|+.+.+..+.++..
T Consensus 53 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 53 TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 35577889999885444443333 5566666666555433
No 262
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=31.65 E-value=62 Score=22.74 Aligned_cols=39 Identities=8% Similarity=-0.034 Sum_probs=22.5
Q ss_pred CCCCcceEEEcCCchHHHHHHH--H----h---CCcEEEecccccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEI--I----E---GGVTVEAGIGTNVTD 150 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~--~----~---~G~~~~v~~~~~~~~ 150 (270)
.+..+|++|+.|.+........ + + +|+.+.+..+.++..
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 51 TGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp SCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 4567789999988443333333 2 2 556666665555443
No 263
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.98 E-value=36 Score=24.05 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=23.5
Q ss_pred CCCcceEEEcCCchHHHHHHHH-----hCCcEEEeccccccccC
Q 024258 113 STGQGVAVLGEDTEMITEIEII-----EGGVTVEAGIGTNVTDT 151 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~v~~~~~~~~~ 151 (270)
+..+|++|+.|.+....+.... ++|+.+.+..+.++...
T Consensus 53 g~~~g~afV~f~~~~~a~~A~~l~g~~~~g~~l~V~~a~~~~~~ 96 (103)
T 2dng_A 53 DKFKGFCYVEFDEVDSLKEALTYDGALLGDRSLRVDIAEGRKQD 96 (103)
T ss_dssp CSEEEEEEEEESSHHHHHHHGGGTTCEETTEECEEEECCCCCCC
T ss_pred CccceEEEEEECCHHHHHHHHhhCCCeECCeEEEEEEecCCCCC
Confidence 4568899999985444443334 45566666665554443
No 264
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=29.73 E-value=34 Score=25.94 Aligned_cols=35 Identities=11% Similarity=0.003 Sum_probs=20.3
Q ss_pred CCcceEEEcCCchHHHHHHH-H-----hCCcEEEecccccc
Q 024258 114 TGQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIGTNV 148 (270)
Q Consensus 114 ~~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~~~~ 148 (270)
+.+|++|+.|.+........ . +.|+.+.+..+..+
T Consensus 70 ~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 70 DNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp SSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred CcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 45788999888443333332 2 45666666655543
No 265
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=29.64 E-value=49 Score=23.80 Aligned_cols=33 Identities=12% Similarity=0.101 Sum_probs=19.1
Q ss_pred CcceEEEcCCchHHHHHHHH------hCCcEEEeccccc
Q 024258 115 GQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTN 147 (270)
Q Consensus 115 ~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~ 147 (270)
.+|++|+.|.+....+.... ++|+.+.+..+.+
T Consensus 68 ~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 68 SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp CTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 67899999984433333322 4555566655444
No 266
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=29.03 E-value=56 Score=24.29 Aligned_cols=39 Identities=13% Similarity=0.154 Sum_probs=24.3
Q ss_pred CcceEEEcCCch--HHHHHHHH------hCCcEEEeccccccccCCC
Q 024258 115 GQGVAVLGEDTE--MITEIEII------EGGVTVEAGIGTNVTDTVG 153 (270)
Q Consensus 115 ~rg~~~v~~~~~--~~~~~~~~------~~G~~~~v~~~~~~~~~~g 153 (270)
++|++|+.|.+. +..++..+ ++|+.+.+..+..+.....
T Consensus 61 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~~~~~ 107 (112)
T 1x4f_A 61 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKKLVS 107 (112)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCSSSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccccccc
Confidence 368999999843 33333322 5778888777666554443
No 267
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=28.63 E-value=37 Score=23.59 Aligned_cols=38 Identities=13% Similarity=0.123 Sum_probs=23.0
Q ss_pred CCCcceEEEcCCchHHHHHHHH------hCCcEEEecccccccc
Q 024258 113 STGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~ 150 (270)
+..+|++|+.|.+....+.... ++|+.+.+..+.++..
T Consensus 47 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 47 LLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp EEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred cCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 3567899999985444443333 4566666666555443
No 268
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=28.44 E-value=35 Score=24.48 Aligned_cols=36 Identities=14% Similarity=-0.073 Sum_probs=21.9
Q ss_pred CCCCcceEEEcCCchHHHHHHHH-----hCCcEEEeccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII-----EGGVTVEAGIGTN 147 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~-----~~G~~~~v~~~~~ 147 (270)
.++.+|++|+.|.+....+..+. ++|+.+++..+.+
T Consensus 51 ~g~~~G~afV~F~~~~~a~~Al~~~~~~~~gr~i~V~~~~~ 91 (102)
T 1wez_A 51 DGRVTGEADVEFATHEDAVAAMAKDKANMQHRYVELFLNST 91 (102)
T ss_dssp SSCEEEEEEEECSSSHHHHHHHTTSSCCSSSSCCEEEEECC
T ss_pred CCCEeeEEEEEECCHHHHHHHHHhCCCeECCcEEEEEECCC
Confidence 35678999999995544443333 4556666554443
No 269
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.37 E-value=46 Score=23.11 Aligned_cols=29 Identities=10% Similarity=0.012 Sum_probs=18.9
Q ss_pred CCCCcceEEEcCCchHHHHHHHH-hCCcEE
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII-EGGVTV 140 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~-~~G~~~ 140 (270)
.+..+|++|+.|.+....+.... ++|..+
T Consensus 48 ~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 48 TGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp SCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred CCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 44678999999996555454444 555544
No 270
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=27.83 E-value=60 Score=23.03 Aligned_cols=36 Identities=14% Similarity=0.008 Sum_probs=20.9
Q ss_pred CCCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccc
Q 024258 112 RSTGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTN 147 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~ 147 (270)
.+..+|++|+.|.+......... ++|+.+.+..+.+
T Consensus 64 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 105 (110)
T 1oo0_B 64 TGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFV 105 (110)
T ss_dssp TSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEE
T ss_pred CCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEccc
Confidence 45678899999985444433333 4455555554443
No 271
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=27.63 E-value=85 Score=21.71 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=22.1
Q ss_pred CCcceEEEcCCchHHHHHHH-H-----hCCcEEEecccccccc
Q 024258 114 TGQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 114 ~~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~~~~~~ 150 (270)
..+|++|+.|.+........ . ++|+.+.+..+.++..
T Consensus 47 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 47 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 45678899888444333333 2 5567777776655433
No 272
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=26.59 E-value=73 Score=22.11 Aligned_cols=37 Identities=14% Similarity=0.248 Sum_probs=22.1
Q ss_pred cceEEEcCCchHHHHHH--HH----hCCcEEEeccccccccCC
Q 024258 116 QGVAVLGEDTEMITEIE--II----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 116 rg~~~v~~~~~~~~~~~--~~----~~G~~~~v~~~~~~~~~~ 152 (270)
+|++|+.|.+....... .+ ++|+.+.+..+.++....
T Consensus 51 kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~~~ 93 (99)
T 2cpj_A 51 KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSASLT 93 (99)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCCCC
Confidence 68899998843333322 22 566777777666654443
No 273
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=26.32 E-value=60 Score=24.15 Aligned_cols=39 Identities=5% Similarity=0.032 Sum_probs=24.1
Q ss_pred CCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccccccC
Q 024258 113 STGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTNVTDT 151 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~~~~~ 151 (270)
+..+|++|+.|.+....+.... ++|+.+.+..+.++...
T Consensus 81 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 81 RQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125 (139)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCCC
Confidence 4567899999985444333333 56777777766654433
No 274
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=26.31 E-value=31 Score=27.03 Aligned_cols=35 Identities=14% Similarity=0.048 Sum_probs=20.3
Q ss_pred CCCCCcceEEEcCCchHHHHHHHH-hC-----CcEEEeccc
Q 024258 111 DRSTGQGVAVLGEDTEMITEIEII-EG-----GVTVEAGIG 145 (270)
Q Consensus 111 ~~~~~rg~~~v~~~~~~~~~~~~~-~~-----G~~~~v~~~ 145 (270)
..+..+|++|+.|.+....+.... ++ |+.+.+..+
T Consensus 94 ~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a 134 (156)
T 3n9u_C 94 ANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPA 134 (156)
T ss_dssp TTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEEC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEc
Confidence 345678999999985544443333 34 444444433
No 275
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=26.22 E-value=70 Score=23.92 Aligned_cols=35 Identities=9% Similarity=0.004 Sum_probs=20.1
Q ss_pred CCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccc
Q 024258 113 STGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTN 147 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~ 147 (270)
+..+|++|+.|.+....+.... ++|+.+.+..+.+
T Consensus 85 g~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~ 125 (129)
T 2kxn_B 85 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSIT 125 (129)
T ss_dssp SCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSS
T ss_pred CccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecC
Confidence 4567889999884443333332 4455555554443
No 276
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.01 E-value=95 Score=21.93 Aligned_cols=36 Identities=11% Similarity=0.013 Sum_probs=21.7
Q ss_pred CcceEEEcCCchHHHHHHH-H-----hCCcEEEecccccccc
Q 024258 115 GQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 115 ~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~~~~~~ 150 (270)
.++++|+.|.+........ . ++|+.+.+..+.++..
T Consensus 60 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 60 GPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp SSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 5788888888444333333 2 5667777776655443
No 277
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=24.85 E-value=1e+02 Score=22.07 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=21.5
Q ss_pred CcceEEEcCCchHHHHHHH-H-----hCCcEEEecccccccc
Q 024258 115 GQGVAVLGEDTEMITEIEI-I-----EGGVTVEAGIGTNVTD 150 (270)
Q Consensus 115 ~rg~~~v~~~~~~~~~~~~-~-----~~G~~~~v~~~~~~~~ 150 (270)
.+|++|+.|.+........ . ++|+.+.+..+.++.+
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTD 104 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCCC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCCC
Confidence 5789999998544433333 3 4556666665554433
No 278
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=24.39 E-value=72 Score=23.25 Aligned_cols=40 Identities=8% Similarity=-0.020 Sum_probs=23.9
Q ss_pred CCCCcceEEEcCCchHHHHHHH--H----hCCcEEEeccccccccC
Q 024258 112 RSTGQGVAVLGEDTEMITEIEI--I----EGGVTVEAGIGTNVTDT 151 (270)
Q Consensus 112 ~~~~rg~~~v~~~~~~~~~~~~--~----~~G~~~~v~~~~~~~~~ 151 (270)
.+..+|++|+.|.+....+... + ++|+.+.+..+.++...
T Consensus 60 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 105 (126)
T 3ex7_B 60 TGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGPP 105 (126)
T ss_dssp TSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSSC
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCCC
Confidence 4456788888888544433333 2 55666777666554443
No 279
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=21.75 E-value=1.1e+02 Score=22.50 Aligned_cols=23 Identities=13% Similarity=0.127 Sum_probs=15.2
Q ss_pred CCCCCcceEEEcCCchHHHHHHH
Q 024258 111 DRSTGQGVAVLGEDTEMITEIEI 133 (270)
Q Consensus 111 ~~~~~rg~~~v~~~~~~~~~~~~ 133 (270)
..+..+|++|+.|.+....+...
T Consensus 100 ~~~~~~g~afV~f~~~~~a~~A~ 122 (140)
T 2ku7_A 100 ETEKHRGFAFVEFELAEDAAAAI 122 (140)
T ss_dssp TTCCCCSEEEEEESCHHHHHHHH
T ss_pred CCCCcCcEEEEEECCHHHHHHHH
Confidence 34567899999998554444444
No 280
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=21.58 E-value=1.1e+02 Score=22.09 Aligned_cols=35 Identities=9% Similarity=0.018 Sum_probs=20.4
Q ss_pred CCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccc
Q 024258 113 STGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTN 147 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~ 147 (270)
+..+|++|+.|.+......... ++|+.+.+..+..
T Consensus 73 g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 113 (124)
T 2kt5_A 73 GRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVAS 113 (124)
T ss_dssp SSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECC
T ss_pred CCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCC
Confidence 4567899999885443333333 4555555554443
No 281
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=21.44 E-value=71 Score=23.97 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=21.1
Q ss_pred CCCcceEEEcCCchHHHHHHHH------hCCcEEEeccccc
Q 024258 113 STGQGVAVLGEDTEMITEIEII------EGGVTVEAGIGTN 147 (270)
Q Consensus 113 ~~~rg~~~v~~~~~~~~~~~~~------~~G~~~~v~~~~~ 147 (270)
+.++|++|+.|.+......... ++|+.+.+..+.+
T Consensus 89 g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 129 (143)
T 3egn_A 89 GRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARS 129 (143)
T ss_dssp TTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCC
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCC
Confidence 4568999999984443333332 5566666665543
No 282
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.62 E-value=66 Score=23.62 Aligned_cols=36 Identities=8% Similarity=-0.075 Sum_probs=24.9
Q ss_pred ceEEEcCC--chHHHHHHHH----hCCcEEEeccccccccCC
Q 024258 117 GVAVLGED--TEMITEIEII----EGGVTVEAGIGTNVTDTV 152 (270)
Q Consensus 117 g~~~v~~~--~~~~~~~~~~----~~G~~~~v~~~~~~~~~~ 152 (270)
|++|+.|. +++..++..+ +.|+.+.+..++.+++..
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~sd~~ 88 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNRELC 88 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSCCCC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCccee
Confidence 88888888 4444444444 668888888888776654
Done!