BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024259
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 50.8 bits (120), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/61 (49%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 205 MASDRQTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLC 264
MA+ + LG+ AS ED+K AYR AL+WHPD++ +K AE+KFKL S AY+ L
Sbjct: 8 MANYYEVLGVQASA--SPEDIKKAYRKLALRWHPDKNP-DNKEEAEKKFKLVSEAYEVLS 64
Query: 265 D 265
D
Sbjct: 65 D 65
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 44.7 bits (104), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 223 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 266
+D+K AYR AL+WHPD++ +K AE+KFK + AY+ L DK
Sbjct: 17 DDIKKAYRRKALQWHPDKNP-DNKEFAEKKFKEVAEAYEVLSDK 59
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 214 LCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
L S + +++ AY+ A+K+HPDR+QG + AE KFK AY+ L D
Sbjct: 9 LGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVLTD 58
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 214 LCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
L S + +++ AY+ A+K+HPDR+QG + AE KFK AY+ L D
Sbjct: 9 LGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVLTD 58
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 223 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
E +K AYR ALKWHPD++ +K AE +FK + AY+ L D
Sbjct: 24 EAIKKAYRKLALKWHPDKNP-ENKEEAERRFKQVAEAYEVLSD 65
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 38.5 bits (88), Expect = 0.004, Method: Composition-based stats.
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 210 QTLGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
QTLGL E++K AYR AL++HPD+++ + AEEKFK + AY L D
Sbjct: 7 QTLGLARGA--SDEEIKRAYRRQALRYHPDKNK---EPGAEEKFKEIAEAYDVLSD 57
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 36.6 bits (83), Expect = 0.015, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 224 DVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
+++ AY+ A+K+HPDR+QG + AE KFK AY+ L D
Sbjct: 19 EIRKAYKRLAMKYHPDRNQGDKE--AEAKFKEIKEAYEVLTD 58
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 36.6 bits (83), Expect = 0.016, Method: Composition-based stats.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 223 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
E++K AYR ALK+HPD++ EKFK S AY+ L D
Sbjct: 21 EELKKAYRKLALKYHPDKNPNEG-----EKFKQISQAYEVLSD 58
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 36.6 bits (83), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 5/43 (11%)
Query: 223 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
+++K YR ALK+HPD+ G + EKFK S A++ L D
Sbjct: 23 QELKKGYRKAALKYHPDKPTGDT-----EKFKEISEAFEILND 60
>pdb|2QSA|A Chain A, Crystal Structure Of J-Domain Of Dnaj Homolog Dnj-2
Precursor From C.Elegans
Length = 109
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 228 AYRVCALKWHPDRHQG-SSKAVAEEKFKLCSAAYQSLCD 265
AYR A K HPDR + K +AEE+F++ + AY++L D
Sbjct: 36 AYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKD 74
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 35.0 bits (79), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 223 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
+D+K +YR ALK+HPD++ + +A +KFK + A+ L D
Sbjct: 32 DDIKKSYRKLALKYHPDKNPDNPEAA--DKFKEINNAHAILTD 72
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 34.7 bits (78), Expect = 0.052, Method: Composition-based stats.
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 223 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
ED+K AYR ALK+HPD++ A E FK AY L +
Sbjct: 22 EDLKKAYRRLALKFHPDKNHAPG---ATEAFKAIGTAYAVLSN 61
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Query: 225 VKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCD 265
+K A+ A+K+HPD+++ AE KF+ + AY++L D
Sbjct: 24 IKKAFHKLAMKYHPDKNKSPD---AEAKFREIAEAYETLSD 61
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 33.1 bits (74), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 3/43 (6%)
Query: 224 DVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 266
D+K AY+ A +WHPD+++ AE++F S AY+ L ++
Sbjct: 33 DIKKAYKKLAREWHPDKNKDPG---AEDRFIQISKAYEILSNE 72
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 32.7 bits (73), Expect = 0.23, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 224 DVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 266
++K AYR ALK+HPD++ + E+FK S AY+ L D+
Sbjct: 24 ELKKAYRKMALKFHPDKNPDGA-----EQFKQISQAYEVLSDE 61
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 212 LGLCASGPLKLEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 266
+G+ + LK +K AYR A K+HPD S + AE +FK + A++ L D+
Sbjct: 11 MGVKPTDDLKT--IKTAYRRLARKYHPD---VSKEPDAEARFKEVAEAWEVLSDE 60
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 31.2 bits (69), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 222 LEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 266
L+ +K AYR A K+HPD S + AE KFK + A++ L D+
Sbjct: 42 LKTIKTAYRRLARKYHPDV---SKENDAEAKFKDLAEAWEVLKDE 83
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 31.2 bits (69), Expect = 0.70, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 223 EDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDKL 267
+++K AY A K+HPD ++ K A+EKF + AY+ L D++
Sbjct: 22 KEIKKAYYQLAKKYHPDTNKDDPK--AKEKFSQLAEAYEVLSDEV 64
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human Williams-
Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 229 YRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSL 263
YR C L +HPDR+ GS++A E+F S AY L
Sbjct: 39 YRQCFL-YHPDRNSGSAEAA--ERFTRISQAYVVL 70
>pdb|2CTQ|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily C
Menber 12
Length = 112
Score = 27.3 bits (59), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 222 LEDVKLAYRVCALKWHPDRHQGSSKAVAEEKFKLCSAAYQSLCDK 266
+E + ++V AL+ HPD+H + KAV E F+ A + L ++
Sbjct: 34 VEQILAEFKVRALECHPDKHPENPKAV--ETFQKLQKAKEILTNE 76
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.132 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,452,762
Number of Sequences: 62578
Number of extensions: 256413
Number of successful extensions: 494
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 470
Number of HSP's gapped (non-prelim): 26
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)