Query 024261
Match_columns 270
No_of_seqs 96 out of 110
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 03:17:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04759 DUF617: Protein of un 100.0 2.2E-96 5E-101 630.9 17.5 162 104-270 1-166 (166)
2 TIGR01570 A_thal_3588 uncharac 100.0 1.8E-95 4E-100 622.5 16.7 160 105-270 1-161 (161)
3 COG2514 Predicted ring-cleavag 57.0 4.9 0.00011 38.1 0.9 13 247-259 108-120 (265)
4 PF12851 Tet_JBP: Oxygenase do 31.1 21 0.00045 30.9 0.7 31 173-203 1-35 (171)
5 PF02955 GSH-S_ATP: Prokaryoti 25.9 28 0.00061 30.5 0.6 22 176-198 89-110 (173)
6 PF12681 Glyoxalase_2: Glyoxal 21.6 49 0.0011 23.8 1.1 11 248-258 93-103 (108)
7 PF08150 FerB: FerB (NUC096) d 21.3 61 0.0013 25.7 1.6 19 168-187 5-23 (76)
8 PF15566 Imm18: Immunity prote 20.6 15 0.00032 27.4 -1.9 34 230-264 3-36 (52)
9 COG1886 FliN Flagellar motor s 19.7 78 0.0017 26.7 2.0 19 167-186 102-120 (136)
10 PF08531 Bac_rhamnosid_N: Alph 19.2 88 0.0019 26.6 2.3 16 172-187 14-29 (172)
No 1
>PF04759 DUF617: Protein of unknown function, DUF617; InterPro: IPR006460 This family of hypothetical plant proteins are defined by a region of about 170 amino acids found at the C terminus. These proteins have highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterised protein. At least 12 distinct members are found in Arabidopsis thaliana (Mouse-ear cress).
Probab=100.00 E-value=2.2e-96 Score=630.95 Aligned_cols=162 Identities=67% Similarity=1.147 Sum_probs=153.2
Q ss_pred eEEEEEeecCCCceeeeEecCCCCCceeEEecCCChhHHHHHHhccceeEEeeeecccccCC----cceeeeceeeEEec
Q 024261 104 RVVGTLFGYRRGHVHFAFQEDAKLSPAFLIELATPTSVLVREMASGLVRIALECEKKTEKKG----LKLLEEPVWRTYCN 179 (270)
Q Consensus 104 ~vTGTlFG~RrGrV~faiQedp~~~P~lLLELa~pT~~L~rEM~sGlvRIALEcek~~~~~~----~~LleepvWtmyCN 179 (270)
||||||||||||||+||||+||+|.|+||||||+||++|+|||++|+|||||||+|++..++ .+||+||+|+||||
T Consensus 1 rvtGTlFG~RrGrV~~aiQ~d~~s~P~lllELa~pT~~L~~EM~~GlvRIaLEc~k~~~~~~~~~~~~Ll~ep~W~myCN 80 (166)
T PF04759_consen 1 RVTGTLFGHRRGRVSFAIQEDPRSPPILLLELAMPTSALVREMASGLVRIALECEKRKGKSKGAASGSLLEEPVWTMYCN 80 (166)
T ss_pred CcEEEEEecccceEEEEEecCCCCCCeEEEEecCcHHHHHHHhhcCeEEEEEEecCCCCCCCcccccccccceeEEEEEC
Confidence 69999999999999999999999999999999999999999999999999999999877544 36999999999999
Q ss_pred CceeeeeeeccCChhHHHHHHhcccccccccccCCCCCCCCCCCCCCCCCceeeeeeecceeeecCccceeeeeCCCCCC
Q 024261 180 GKKCGYAMRRECGPEELKILKAVEPISMGAGVLPGDNENGEGNGAGGSEGELMYMRARFERVVGSKDSEAFYMMNPDCSG 259 (270)
Q Consensus 180 GrK~GYAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~~~~g~dGElmYMRA~FERVVGSkDSEsfyMinPdg~~ 259 (270)
||||||||||+||++||+||++|++|||||||||+.. +..++.|||||||||+|||||||+|||||||||||||+
T Consensus 81 GrK~GyAvRRe~t~~d~~vL~~l~~VS~GAGVlP~~~-----~~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~ 155 (166)
T PF04759_consen 81 GRKVGYAVRREPTDDDLHVLELLRSVSMGAGVLPGGG-----GGSGGGDGELMYMRARFERVVGSRDSESFYMINPDGNG 155 (166)
T ss_pred CceeeeeEEcCCCHHHHHHHHhhheeeecceeccCcc-----ccCCCCCceEeeeeeeeeeeeccCCcceeEEECCCCCC
Confidence 9999999999999999999999999999999999932 23457789999999999999999999999999999999
Q ss_pred CCceEEEEeeC
Q 024261 260 GPELSVYLLRV 270 (270)
Q Consensus 260 GpELSIFflRv 270 (270)
||||||||+||
T Consensus 156 GpELSIFf~Rv 166 (166)
T PF04759_consen 156 GPELSIFFLRV 166 (166)
T ss_pred CceEEEEEEeC
Confidence 99999999997
No 2
>TIGR01570 A_thal_3588 uncharacterized plant-specific domain TIGR01570. This model represents a region of about 170 amino acids found at the C-terminus of a family of plant proteins. These proteins typically have additional highly divergent N-terminal regions rich in low complexity sequence. PSI-BLAST reveals no clear similarity to any characterized protein. At least 12 distinct members are found in Arabidopsis thaliana.
Probab=100.00 E-value=1.8e-95 Score=622.51 Aligned_cols=160 Identities=59% Similarity=1.029 Sum_probs=151.7
Q ss_pred EEEEEeecCCCceeeeEecCCCCCceeEEecCCChhHHHHHHhccceeEEeeeecccccCCcceeeeceeeEEecCceee
Q 024261 105 VVGTLFGYRRGHVHFAFQEDAKLSPAFLIELATPTSVLVREMASGLVRIALECEKKTEKKGLKLLEEPVWRTYCNGKKCG 184 (270)
Q Consensus 105 vTGTlFG~RrGrV~faiQedp~~~P~lLLELa~pT~~L~rEM~sGlvRIALEcek~~~~~~~~LleepvWtmyCNGrK~G 184 (270)
|||||||||||||+||||+||+|+|+||||||+||++|+|||++|+|||||||+|++.+++.+||+||+|+|||||||||
T Consensus 1 vtGTlfG~RrgrV~~~iQ~dp~~~P~lllELa~pt~~L~~Em~~G~vRIaLEc~k~~~~~~~~ll~ep~W~myCNGrk~G 80 (161)
T TIGR01570 1 VTGTIFGYRKGRVNFCIQEDRRSLPILLLELAMPTSVLQKEMSSGLVRIALECETRKQDKDSKLLSEPVWTMYCNGRKVG 80 (161)
T ss_pred CeEEEecCCCCcceeeecCCCCCCCeeeeeecCcHHHHHHHhhcCceeEEeeeeccccCCCccceeeeeEEEEECCceee
Confidence 79999999999999999999999999999999999999999999999999999998877778999999999999999999
Q ss_pred eeeeccCChhHHHHHHhcccccccccccCCCCCCCCCCCCCCCC-CceeeeeeecceeeecCccceeeeeCCCCCCCCce
Q 024261 185 YAMRRECGPEELKILKAVEPISMGAGVLPGDNENGEGNGAGGSE-GELMYMRARFERVVGSKDSEAFYMMNPDCSGGPEL 263 (270)
Q Consensus 185 YAvRRe~t~~D~~VL~~l~~VSmGAGVLP~~~~~~~~~~~~g~d-GElmYMRA~FERVVGSkDSEsfyMinPdg~~GpEL 263 (270)
|||||+||++||+||++|++|||||||||+.. +.++.| ||||||||+|||||||+|||||||||||||+||||
T Consensus 81 yAvRR~~t~~d~~vL~~l~~VS~GAGVlP~~~------~~~~~~~gel~YMRA~FERVVGS~DSEsfyminPdg~~gpEL 154 (161)
T TIGR01570 81 YAVKRSASEEDMTVLTALSKVSVGAGVLPCGK------ELGGFDEDELMYMRASFERVVGSKDSESFYMINPEGNIGQEL 154 (161)
T ss_pred EeEecCCCHHHHHHHHhhheeeecceeccCCC------CCCCCCCceEEEEeeeeeEeccccCceeEEeECCCCCCCceE
Confidence 99999999999999999999999999999642 122334 99999999999999999999999999999999999
Q ss_pred EEEEeeC
Q 024261 264 SVYLLRV 270 (270)
Q Consensus 264 SIFflRv 270 (270)
||||+|+
T Consensus 155 SIF~lR~ 161 (161)
T TIGR01570 155 SIFFLRS 161 (161)
T ss_pred EEEEEeC
Confidence 9999996
No 3
>COG2514 Predicted ring-cleavage extradiol dioxygenase [General function prediction only]
Probab=57.02 E-value=4.9 Score=38.09 Aligned_cols=13 Identities=46% Similarity=0.943 Sum_probs=12.2
Q ss_pred cceeeeeCCCCCC
Q 024261 247 SEAFYMMNPDCSG 259 (270)
Q Consensus 247 SEsfyMinPdg~~ 259 (270)
|||+|+-||+||+
T Consensus 108 SEAlYl~DPEGNG 120 (265)
T COG2514 108 SEALYLEDPEGNG 120 (265)
T ss_pred heeeeecCCCCCe
Confidence 9999999999985
No 4
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro []. Interestingly TET2 is considered as an oncogene, as it is found mutated in some types of cancer []. This entry represents the double-stranded beta helix (DSBH) fold of the 2-oxoglutarate (2OG) - Fe(II) oxygenases. DSBH comprises a part of the catalytic domain in TETS. It is found in many organisms including fruit fly, African malaria mosquito, zebrafish, mouse and human.
Probab=31.06 E-value=21 Score=30.91 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=18.6
Q ss_pred eeeEEecCceeee---eeec-cCChhHHHHHHhcc
Q 024261 173 VWRTYCNGKKCGY---AMRR-ECGPEELKILKAVE 203 (270)
Q Consensus 173 vWtmyCNGrK~GY---AvRR-e~t~~D~~VL~~l~ 203 (270)
-|.||-||+|.+= +.|+ +.+.++..+++.|+
T Consensus 1 ~~~~y~~~~~~~r~~~~~rk~~~~~~~~~~~~~l~ 35 (171)
T PF12851_consen 1 SWSMYFNGCKFPRGSKKPRKFRLTPENPKLEENLQ 35 (171)
T ss_pred CeeEEeCCCCccccccccceeecccccccHHHHHH
Confidence 3999999988765 3344 34555544444443
No 5
>PF02955 GSH-S_ATP: Prokaryotic glutathione synthetase, ATP-grasp domain; InterPro: IPR004218 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This is the ATP-binding domain of the enzyme.; GO: 0004363 glutathione synthase activity, 0005524 ATP binding, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=25.89 E-value=28 Score=30.46 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=13.5
Q ss_pred EEecCceeeeeeeccCChhHHHH
Q 024261 176 TYCNGKKCGYAMRRECGPEELKI 198 (270)
Q Consensus 176 myCNGrK~GYAvRRe~t~~D~~V 198 (270)
+++||+=+| |++|.+.+.|+++
T Consensus 89 i~~nG~~~~-av~R~P~~gd~R~ 110 (173)
T PF02955_consen 89 ILFNGEPSH-AVRRIPAKGDFRS 110 (173)
T ss_dssp EEETTEE-S-EEEEE--SS-S--
T ss_pred EEECCEEhH-HeecCCCCCCcee
Confidence 578999888 8888888888764
No 6
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=21.64 E-value=49 Score=23.83 Aligned_cols=11 Identities=36% Similarity=1.023 Sum_probs=7.3
Q ss_pred ceeeeeCCCCC
Q 024261 248 EAFYMMNPDCS 258 (270)
Q Consensus 248 EsfyMinPdg~ 258 (270)
-.||++||||+
T Consensus 93 ~~~~~~DPdG~ 103 (108)
T PF12681_consen 93 RSFYFIDPDGN 103 (108)
T ss_dssp EEEEEE-TTS-
T ss_pred EEEEEECCCCC
Confidence 36899999886
No 7
>PF08150 FerB: FerB (NUC096) domain; InterPro: IPR012561 The ferlin gene family are characterised by multiple tandem C2 domains and a C-terminal transmembrane domain. They are found in a wide range of species and their function remains unknown, however, mutations in its two most well-characterised members, dysferlin and otoferlin, have been implicated in human disease []. This is central domain B in proteins of the Ferlin family [].; GO: 0016021 integral to membrane
Probab=21.29 E-value=61 Score=25.66 Aligned_cols=19 Identities=21% Similarity=0.527 Sum_probs=15.2
Q ss_pred eeeeceeeEEecCceeeeee
Q 024261 168 LLEEPVWRTYCNGKKCGYAM 187 (270)
Q Consensus 168 LleepvWtmyCNGrK~GYAv 187 (270)
|=+.-+| |.||+|++.||-
T Consensus 5 iPDV~IW-Ml~g~kRvAYaR 23 (76)
T PF08150_consen 5 IPDVFIW-MLSGNKRVAYAR 23 (76)
T ss_pred CCcEEEE-EEeCCeEEEEEE
Confidence 4456677 889999999993
No 8
>PF15566 Imm18: Immunity protein 18
Probab=20.63 E-value=15 Score=27.44 Aligned_cols=34 Identities=29% Similarity=0.463 Sum_probs=26.6
Q ss_pred ceeeeeeecceeeecCccceeeeeCCCCCCCCceE
Q 024261 230 ELMYMRARFERVVGSKDSEAFYMMNPDCSGGPELS 264 (270)
Q Consensus 230 ElmYMRA~FERVVGSkDSEsfyMinPdg~~GpELS 264 (270)
+|.|+...-++.+++.+.+-=|+|.|+= +|-|||
T Consensus 3 gL~~L~~~l~~L~~~~~~~H~Hlmtp~W-gG~ELs 36 (52)
T PF15566_consen 3 GLELLQDQLENLQEKEPFDHEHLMTPDW-GGEELS 36 (52)
T ss_pred hHHHHHHHHHHHHhccCCCCceeccccc-cccccc
Confidence 5778888888888887888889999973 356665
No 9
>COG1886 FliN Flagellar motor switch/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=19.69 E-value=78 Score=26.66 Aligned_cols=19 Identities=42% Similarity=0.482 Sum_probs=15.5
Q ss_pred ceeeeceeeEEecCceeeee
Q 024261 167 KLLEEPVWRTYCNGKKCGYA 186 (270)
Q Consensus 167 ~LleepvWtmyCNGrK~GYA 186 (270)
++..+|++- ++|||++||+
T Consensus 102 ~~~~~~VdI-~vNg~~Ig~G 120 (136)
T COG1886 102 KLAGEPVDI-LVNGRLIGRG 120 (136)
T ss_pred CcCCCceEE-EECCEEEEEE
Confidence 356788885 6999999986
No 10
>PF08531 Bac_rhamnosid_N: Alpha-L-rhamnosidase N-terminal domain; InterPro: IPR013737 This domain is found in bacterial rhamnosidase A and B enzymes and is probably involved in substrate recognition. ; PDB: 2OKX_B.
Probab=19.19 E-value=88 Score=26.63 Aligned_cols=16 Identities=25% Similarity=0.492 Sum_probs=13.4
Q ss_pred ceeeEEecCceeeeee
Q 024261 172 PVWRTYCNGKKCGYAM 187 (270)
Q Consensus 172 pvWtmyCNGrK~GYAv 187 (270)
-...+|.||++||-.+
T Consensus 14 g~Y~l~vNG~~V~~~~ 29 (172)
T PF08531_consen 14 GRYELYVNGERVGDGP 29 (172)
T ss_dssp SEEEEEETTEEEEEE-
T ss_pred eeEEEEECCEEeeCCc
Confidence 4688999999999888
Done!