Query 024261
Match_columns 270
No_of_seqs 96 out of 110
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 05:11:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_X 26S proteasome regulato 34.0 9.9 0.00034 32.0 0.4 14 14-27 91-104 (156)
2 2kd2_A FAS apoptotic inhibitor 28.2 27 0.00094 27.5 2.0 20 150-183 23-42 (94)
3 2l6o_A Uncharacterized protein 20.8 38 0.0013 27.3 1.5 31 207-237 1-31 (114)
4 4gym_A Glyoxalase/bleomycin re 15.9 56 0.0019 24.0 1.4 10 249-258 117-126 (149)
5 2zfd_B Putative uncharacterize 15.4 1.3E+02 0.0044 23.8 3.5 57 72-136 38-96 (123)
6 2dxu_A Biotin--[acetyl-COA-car 14.8 57 0.002 27.9 1.4 26 176-211 105-130 (235)
7 3rri_A Glyoxalase/bleomycin re 12.1 84 0.0029 22.3 1.4 10 249-258 112-121 (135)
8 3sk2_A EHPR; antibiotic resist 11.2 93 0.0032 22.3 1.4 11 248-258 114-124 (132)
9 2xbz_A RETS-hybrid sensor kina 11.1 1.2E+02 0.0041 24.3 2.1 30 109-139 67-96 (171)
10 2r2y_A Protein ADRM1; proteaso 10.9 74 0.0025 26.8 0.8 12 16-27 104-115 (153)
No 1
>4b4t_X 26S proteasome regulatory subunit RPN13; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} PDB: 2z4d_A
Probab=34.03 E-value=9.9 Score=32.02 Aligned_cols=14 Identities=50% Similarity=0.997 Sum_probs=11.7
Q ss_pred Cccccccccccccc
Q 024261 14 FSFSRRYFNWPKKK 27 (270)
Q Consensus 14 fs~srr~f~w~~k~ 27 (270)
||.++|||.|=.-.
T Consensus 91 Fss~~r~fFWmQe~ 104 (156)
T 4b4t_X 91 FSSNERYFFWLQEK 104 (156)
T ss_dssp CSSSCCEEEEECSS
T ss_pred ecCCCcEEEEeecC
Confidence 77899999997754
No 2
>2kd2_A FAS apoptotic inhibitory molecule 1; protein, beta sandwich, apoptosis; NMR {Mus musculus} PDB: 2kw1_A
Probab=28.21 E-value=27 Score=27.50 Aligned_cols=20 Identities=35% Similarity=0.697 Sum_probs=13.5
Q ss_pred ceeEEeeeecccccCCcceeeeceeeEEecCcee
Q 024261 150 LVRIALECEKKTEKKGLKLLEEPVWRTYCNGKKC 183 (270)
Q Consensus 150 lvRIALEcek~~~~~~~~LleepvWtmyCNGrK~ 183 (270)
--||+||-++ =..||||+|+
T Consensus 23 ~~RIvLeK~t--------------mdVwvNG~~i 42 (94)
T 2kd2_A 23 DLRVVLEKDT--------------MDVWCNGQKM 42 (94)
T ss_dssp EEEEEEETTT--------------TEEEESSSBC
T ss_pred EEEEEEecCc--------------EEEEECCEEe
Confidence 4688888332 1367999986
No 3
>2l6o_A Uncharacterized protein YP_926445.1; structural genomics, PSI-biology, protein structure initiati center for structural genomics, JCSG; NMR {Shewanella amazonensis}
Probab=20.81 E-value=38 Score=27.30 Aligned_cols=31 Identities=26% Similarity=0.189 Sum_probs=18.4
Q ss_pred ccccccCCCCCCCCCCCCCCCCCceeeeeee
Q 024261 207 MGAGVLPGDNENGEGNGAGGSEGELMYMRAR 237 (270)
Q Consensus 207 mGAGVLP~~~~~~~~~~~~g~dGElmYMRA~ 237 (270)
||||-.|.....=|.=-.-.+|+||+|++-.
T Consensus 1 ~~~~~~~~~mi~WPailkl~gddELiYL~s~ 31 (114)
T 2l6o_A 1 MGAGQTPHPQLIWPALLKQQGCNELLPLRTN 31 (114)
T ss_dssp CCSSSCSCSSCCSSEEECCSSCCCCEEESSH
T ss_pred CCCCcccCcCccCCEEEecCCCceeEeecCH
Confidence 7999888754310000012356899999754
No 4
>4gym_A Glyoxalase/bleomycin resistance protein/dioxygena; PSI-biology, midwest center for structural genomics, MCSG, oxidoreductase; HET: MSE; 1.56A {Conexibacter woesei}
Probab=15.89 E-value=56 Score=24.04 Aligned_cols=10 Identities=10% Similarity=-0.061 Sum_probs=8.8
Q ss_pred eeeeeCCCCC
Q 024261 249 AFYMMNPDCS 258 (270)
Q Consensus 249 sfyMinPdg~ 258 (270)
++|.-|||||
T Consensus 117 ~~~f~DPDGn 126 (149)
T 4gym_A 117 GRSFHDLDGH 126 (149)
T ss_dssp EEEEECTTCC
T ss_pred EEEEEcCCCC
Confidence 5899999997
No 5
>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana}
Probab=15.38 E-value=1.3e+02 Score=23.81 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=39.5
Q ss_pred cccchhHHHHHHHHHHHHhcCC--CCcccCCCCceEEEEEeecCCCceeeeEecCCCCCceeEEecC
Q 024261 72 ARKKKSSAVSKLRSALTVFGKS--KSAYHSGLGTRVVGTLFGYRRGHVHFAFQEDAKLSPAFLIELA 136 (270)
Q Consensus 72 ~~~k~~~~~~~~Rs~l~~~~~~--r~~~~~~~~t~vTGTlFG~RrGrV~faiQedp~~~P~lLLELa 136 (270)
.++....++++|-.+...++.. +.. .. .|+.=| |+|++.+++.----++..+|+|+-
T Consensus 38 S~~~a~~ii~klEe~a~~lg~~v~kk~------~~-~~~~~g-~kG~l~v~~EVfev~p~l~vVEvr 96 (123)
T 2zfd_B 38 SAWTAERVVERLEEIVSAENLTVAKKE------TW-GMKIEG-QKGNFAMVVEINQLTDELVMIEVR 96 (123)
T ss_dssp ESSCHHHHHHHHHHHHHHTTCEEEEEE------TT-EEEEEE-GGGTEEEEEEEEECSSSCEEEEEE
T ss_pred eCCCHHHHHHHHHHHHHHCCCEEEEcC------Cc-cccccC-CCccEEEEEEEEEecCCEEEEEEE
Confidence 3455788999999999988753 211 11 677777 689999987764444445688874
No 6
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=14.83 E-value=57 Score=27.94 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=15.4
Q ss_pred EEecCceeeeeeeccCChhHHHHHHhcccccccccc
Q 024261 176 TYCNGKKCGYAMRRECGPEELKILKAVEPISMGAGV 211 (270)
Q Consensus 176 myCNGrK~GYAvRRe~t~~D~~VL~~l~~VSmGAGV 211 (270)
.|+||||+|= |-=|. ....|-+|.|+
T Consensus 105 i~~~gkKl~G-IL~E~---------~~~~vViGiGi 130 (235)
T 2dxu_A 105 VLVNYKKIAG-VLVEG---------KGDKIVLGIGL 130 (235)
T ss_dssp EEETTEEEEE-EEEEE---------CSSCEEEEEEE
T ss_pred EEECCEEEEE-EEEee---------cCCEEEEEEEE
Confidence 5789999652 21122 24457777776
No 7
>3rri_A Glyoxalase/bleomycin resistance protein/dioxygena; structural genomics, PSI-biology, midwest center for structu genomics; 1.50A {Alicyclobacillus acidocaldarius subsp}
Probab=12.10 E-value=84 Score=22.31 Aligned_cols=10 Identities=20% Similarity=0.913 Sum_probs=9.0
Q ss_pred eeeeeCCCCC
Q 024261 249 AFYMMNPDCS 258 (270)
Q Consensus 249 sfyMinPdg~ 258 (270)
+||+.|||||
T Consensus 112 ~~~~~DPdGn 121 (135)
T 3rri_A 112 TFFLIDPSNN 121 (135)
T ss_dssp EEEEECTTCC
T ss_pred EEEEECCCCC
Confidence 6899999987
No 8
>3sk2_A EHPR; antibiotic resistance, griseoluteate-binding protein; HET: GRI; 1.01A {Pantoea agglomerans} PDB: 3sk1_A*
Probab=11.21 E-value=93 Score=22.31 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=9.1
Q ss_pred ceeeeeCCCCC
Q 024261 248 EAFYMMNPDCS 258 (270)
Q Consensus 248 EsfyMinPdg~ 258 (270)
..||+.|||||
T Consensus 114 ~~~~~~DPdGn 124 (132)
T 3sk2_A 114 RTFLISDPDGH 124 (132)
T ss_dssp EEEEEECTTCC
T ss_pred EEEEEECCCCC
Confidence 35899999986
No 9
>2xbz_A RETS-hybrid sensor kinase; phosphoprotein, biofilm, transferase; 2.65A {Pseudomonas aeruginosa}
Probab=11.11 E-value=1.2e+02 Score=24.28 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=22.7
Q ss_pred EeecCCCceeeeEecCCCCCceeEEecCCCh
Q 024261 109 LFGYRRGHVHFAFQEDAKLSPAFLIELATPT 139 (270)
Q Consensus 109 lFG~RrGrV~faiQedp~~~P~lLLELa~pT 139 (270)
-||+.++.+||.+.-..... .++||+.-|.
T Consensus 67 n~G~s~s~~Wlr~~L~n~~~-~~~L~i~~p~ 96 (171)
T 2xbz_A 67 IFPASPQAVWLQVQLPAQKV-PSWLWIFAPR 96 (171)
T ss_dssp EECSEEEEEEEEEEECCCSS-CEEEEEECTT
T ss_pred ccCCCCCCEEEEEEEEcCCC-ceEEEECCCC
Confidence 38999999999998644333 6778888774
No 10
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=10.87 E-value=74 Score=26.76 Aligned_cols=12 Identities=33% Similarity=0.617 Sum_probs=9.9
Q ss_pred cccccccccccc
Q 024261 16 FSRRYFNWPKKK 27 (270)
Q Consensus 16 ~srr~f~w~~k~ 27 (270)
.++|||.|-.-.
T Consensus 104 s~~r~FFWmQe~ 115 (153)
T 2r2y_A 104 GSKRLFFWMQEP 115 (153)
T ss_dssp TCCEEEEEECSS
T ss_pred CCceEEEEecCC
Confidence 579999998755
Done!