Query 024262
Match_columns 270
No_of_seqs 272 out of 2605
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:17:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 4.4E-33 9.4E-38 230.7 19.8 163 4-203 105-274 (346)
2 KOG0105 Alternative splicing f 100.0 1.3E-31 2.7E-36 193.1 21.3 193 1-205 1-193 (241)
3 TIGR01645 half-pint poly-U bin 100.0 3E-31 6.5E-36 230.7 20.6 174 4-205 105-285 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.5E-30 5.4E-35 218.8 19.9 162 4-202 1-169 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 7.8E-30 1.7E-34 222.8 20.5 172 4-203 87-265 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.4E-28 3.1E-33 208.1 23.8 196 5-204 88-349 (352)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.9E-28 4.2E-33 213.9 23.8 192 4-202 273-478 (481)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 7.9E-29 1.7E-33 216.3 21.2 170 5-202 1-172 (481)
9 TIGR01628 PABP-1234 polyadenyl 100.0 4.4E-28 9.4E-33 216.6 19.3 158 8-202 2-165 (562)
10 TIGR01648 hnRNP-R-Q heterogene 100.0 1E-27 2.2E-32 208.5 20.2 191 5-203 57-306 (578)
11 KOG0148 Apoptosis-promoting RN 100.0 3E-28 6.5E-33 185.7 14.7 170 8-202 64-236 (321)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.7E-27 5.7E-32 209.6 21.9 186 3-202 172-373 (509)
13 KOG0109 RNA-binding protein LA 100.0 3.4E-28 7.4E-33 187.2 11.1 146 7-202 3-148 (346)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.9E-27 1.7E-31 206.6 21.3 187 4-202 293-500 (509)
15 KOG0144 RNA-binding protein CU 100.0 6.8E-28 1.5E-32 194.7 12.9 168 4-206 32-208 (510)
16 TIGR01628 PABP-1234 polyadenyl 100.0 2.4E-27 5.2E-32 211.8 17.8 179 4-203 176-363 (562)
17 KOG0131 Splicing factor 3b, su 99.9 2.9E-27 6.4E-32 170.3 12.4 165 4-206 7-179 (203)
18 KOG0117 Heterogeneous nuclear 99.9 1E-26 2.2E-31 188.8 16.3 190 5-202 82-329 (506)
19 TIGR01622 SF-CC1 splicing fact 99.9 6.2E-26 1.3E-30 198.3 22.4 193 6-202 186-446 (457)
20 KOG0145 RNA-binding protein EL 99.9 1.2E-26 2.5E-31 176.2 14.4 164 4-204 39-209 (360)
21 KOG0127 Nucleolar protein fibr 99.9 8.8E-26 1.9E-30 187.5 15.5 184 6-202 5-194 (678)
22 KOG0127 Nucleolar protein fibr 99.9 3.7E-24 8E-29 177.9 19.3 197 5-201 116-375 (678)
23 KOG0145 RNA-binding protein EL 99.9 9.5E-24 2.1E-28 160.4 15.8 192 7-202 128-356 (360)
24 KOG0124 Polypyrimidine tract-b 99.9 5.1E-25 1.1E-29 174.8 8.8 170 7-204 114-290 (544)
25 KOG0106 Alternative splicing f 99.9 3.7E-24 8.1E-29 162.1 11.2 163 7-198 2-165 (216)
26 KOG0107 Alternative splicing f 99.9 1.2E-22 2.7E-27 145.6 14.0 78 124-206 10-87 (195)
27 KOG0123 Polyadenylate-binding 99.9 3.4E-22 7.4E-27 166.7 16.7 152 7-206 2-155 (369)
28 KOG4206 Spliceosomal protein s 99.9 2.1E-21 4.5E-26 145.7 18.6 196 2-201 5-219 (221)
29 KOG0110 RNA-binding protein (R 99.9 1.3E-22 2.9E-27 173.7 13.7 166 8-203 517-692 (725)
30 TIGR01645 half-pint poly-U bin 99.9 7.4E-20 1.6E-24 159.9 22.6 79 5-83 203-284 (612)
31 KOG0147 Transcriptional coacti 99.9 4.9E-21 1.1E-25 159.9 13.7 192 5-201 277-525 (549)
32 KOG0123 Polyadenylate-binding 99.9 7.4E-21 1.6E-25 158.8 14.8 168 4-203 74-245 (369)
33 PLN03134 glycine-rich RNA-bind 99.9 3.4E-20 7.4E-25 135.3 14.4 82 4-85 32-116 (144)
34 KOG0107 Alternative splicing f 99.9 8.2E-20 1.8E-24 131.2 15.8 78 4-83 8-85 (195)
35 KOG1190 Polypyrimidine tract-b 99.8 1.3E-19 2.8E-24 146.1 17.7 192 6-202 297-489 (492)
36 KOG4205 RNA-binding protein mu 99.8 1.5E-20 3.3E-25 151.6 11.3 167 1-202 1-174 (311)
37 KOG0144 RNA-binding protein CU 99.8 3E-20 6.4E-25 150.8 12.5 81 5-85 123-208 (510)
38 KOG4207 Predicted splicing fac 99.8 9.5E-20 2.1E-24 134.2 13.8 80 4-83 11-93 (256)
39 KOG0147 Transcriptional coacti 99.8 1.6E-21 3.5E-26 162.8 4.9 172 4-201 177-355 (549)
40 KOG0146 RNA-binding protein ET 99.8 2.4E-19 5.1E-24 137.2 15.0 193 5-201 18-362 (371)
41 KOG1457 RNA binding protein (c 99.8 3.6E-19 7.7E-24 132.7 14.8 184 5-188 33-274 (284)
42 KOG4207 Predicted splicing fac 99.8 1.7E-19 3.7E-24 132.9 12.4 80 119-202 8-91 (256)
43 KOG0148 Apoptosis-promoting RN 99.8 1E-19 2.2E-24 139.4 10.6 139 1-205 1-143 (321)
44 KOG4676 Splicing factor, argin 99.8 2.8E-20 6E-25 149.1 3.2 181 6-188 7-214 (479)
45 KOG0121 Nuclear cap-binding pr 99.8 3.6E-19 7.8E-24 121.2 7.6 80 4-83 34-116 (153)
46 KOG4212 RNA-binding protein hn 99.8 2.2E-17 4.8E-22 134.5 17.6 184 5-188 43-282 (608)
47 KOG0113 U1 small nuclear ribon 99.8 1.8E-17 3.8E-22 128.8 15.4 87 3-89 98-187 (335)
48 KOG1548 Transcription elongati 99.8 1.3E-17 2.8E-22 132.1 14.7 194 4-203 132-351 (382)
49 KOG4211 Splicing factor hnRNP- 99.8 1.9E-17 4.2E-22 136.9 15.8 168 4-202 8-180 (510)
50 PF00076 RRM_1: RNA recognitio 99.7 6.3E-18 1.4E-22 108.8 7.5 68 9-76 1-70 (70)
51 PLN03120 nucleic acid binding 99.7 1.5E-17 3.3E-22 129.6 10.6 77 6-83 4-80 (260)
52 KOG0110 RNA-binding protein (R 99.7 5.8E-17 1.3E-21 139.4 14.1 190 5-202 384-596 (725)
53 KOG0114 Predicted RNA-binding 99.7 3E-17 6.4E-22 107.6 8.9 80 4-83 16-95 (124)
54 TIGR01648 hnRNP-R-Q heterogene 99.7 4.2E-17 9.1E-22 142.6 12.6 136 5-152 232-369 (578)
55 TIGR01659 sex-lethal sex-letha 99.7 1.6E-16 3.5E-21 132.2 14.4 80 5-84 192-276 (346)
56 PLN03121 nucleic acid binding 99.7 1.2E-16 2.6E-21 122.5 11.5 81 4-85 3-83 (243)
57 KOG0126 Predicted RNA-binding 99.7 5.2E-18 1.1E-22 122.6 0.6 83 4-86 33-118 (219)
58 KOG0122 Translation initiation 99.7 2E-16 4.4E-21 119.7 9.0 80 4-83 187-269 (270)
59 PF14259 RRM_6: RNA recognitio 99.7 2.3E-16 4.9E-21 101.4 8.0 68 9-76 1-70 (70)
60 KOG0120 Splicing factor U2AF, 99.7 7.7E-16 1.7E-20 130.5 10.9 183 4-202 287-490 (500)
61 PLN03134 glycine-rich RNA-bind 99.6 1.1E-14 2.4E-19 106.3 14.4 83 119-205 29-115 (144)
62 KOG1456 Heterogeneous nuclear 99.6 3.8E-14 8.3E-19 113.6 17.9 189 4-195 285-480 (494)
63 COG0724 RNA-binding proteins ( 99.6 8E-15 1.7E-19 120.1 14.5 145 6-162 115-263 (306)
64 KOG0124 Polypyrimidine tract-b 99.6 4.9E-14 1.1E-18 112.8 17.1 77 7-83 211-290 (544)
65 PLN03213 repressor of silencin 99.6 2.1E-15 4.5E-20 125.0 9.5 78 4-82 8-87 (759)
66 smart00362 RRM_2 RNA recogniti 99.6 4.5E-15 9.7E-20 95.5 9.1 71 8-78 1-72 (72)
67 KOG1190 Polypyrimidine tract-b 99.6 3.6E-14 7.9E-19 115.0 16.1 189 8-203 152-372 (492)
68 KOG0125 Ataxin 2-binding prote 99.6 2E-15 4.4E-20 119.0 7.8 80 4-83 94-174 (376)
69 KOG0130 RNA-binding protein RB 99.6 1.5E-15 3.3E-20 104.5 6.2 79 5-83 71-152 (170)
70 KOG1456 Heterogeneous nuclear 99.6 2.9E-13 6.2E-18 108.7 19.4 193 3-202 117-361 (494)
71 KOG0149 Predicted RNA-binding 99.6 4.2E-15 9E-20 112.3 7.0 75 7-82 13-90 (247)
72 KOG0113 U1 small nuclear ribon 99.6 9.5E-14 2.1E-18 108.3 13.5 77 122-202 99-179 (335)
73 KOG4212 RNA-binding protein hn 99.6 3.5E-13 7.7E-18 110.3 17.3 74 122-200 534-607 (608)
74 PF13893 RRM_5: RNA recognitio 99.5 5.3E-14 1.2E-18 86.0 8.0 56 23-80 1-56 (56)
75 cd00590 RRM RRM (RNA recogniti 99.5 1E-13 2.2E-18 89.6 9.4 72 8-79 1-74 (74)
76 smart00360 RRM RNA recognition 99.5 5.6E-14 1.2E-18 90.0 7.9 68 11-78 1-71 (71)
77 KOG0415 Predicted peptidyl pro 99.5 1.2E-14 2.6E-19 115.8 5.3 81 4-84 237-320 (479)
78 PF00076 RRM_1: RNA recognitio 99.5 6.3E-14 1.4E-18 89.9 7.8 66 127-196 1-69 (70)
79 KOG0125 Ataxin 2-binding prote 99.5 1E-13 2.2E-18 109.5 8.3 78 121-202 93-172 (376)
80 KOG0111 Cyclophilin-type pepti 99.5 3.7E-14 8.1E-19 105.9 5.3 82 4-85 8-92 (298)
81 KOG1365 RNA-binding protein Fu 99.5 4.2E-14 9.1E-19 113.8 5.9 189 5-202 160-360 (508)
82 KOG0108 mRNA cleavage and poly 99.5 1.3E-13 2.8E-18 116.5 8.9 79 7-85 19-100 (435)
83 KOG0105 Alternative splicing f 99.5 4.1E-13 8.8E-18 97.8 10.2 79 123-205 5-84 (241)
84 KOG0109 RNA-binding protein LA 99.5 1.3E-13 2.7E-18 107.3 6.3 93 4-101 76-168 (346)
85 PLN03120 nucleic acid binding 99.5 5.1E-13 1.1E-17 104.4 9.7 74 124-202 4-78 (260)
86 KOG0117 Heterogeneous nuclear 99.5 1.9E-13 4.2E-18 112.1 7.5 77 6-87 259-335 (506)
87 KOG0130 RNA-binding protein RB 99.4 5.7E-13 1.2E-17 92.0 8.1 78 121-202 69-150 (170)
88 KOG0114 Predicted RNA-binding 99.4 3.5E-12 7.6E-17 84.0 9.0 80 119-202 13-93 (124)
89 PF14259 RRM_6: RNA recognitio 99.4 2.2E-12 4.8E-17 82.7 7.6 66 127-196 1-69 (70)
90 smart00361 RRM_1 RNA recogniti 99.4 2.3E-12 5E-17 82.4 7.4 58 20-77 2-69 (70)
91 KOG4454 RNA binding protein (R 99.4 4.9E-13 1.1E-17 99.9 4.8 140 4-188 7-151 (267)
92 KOG0120 Splicing factor U2AF, 99.4 3.3E-12 7.1E-17 108.7 10.3 178 4-201 173-366 (500)
93 KOG0122 Translation initiation 99.4 1.5E-11 3.2E-16 93.6 12.3 79 120-202 185-267 (270)
94 PLN03213 repressor of silencin 99.4 4.3E-12 9.3E-17 105.6 9.9 76 123-202 9-86 (759)
95 PLN03121 nucleic acid binding 99.4 5.5E-12 1.2E-16 97.1 9.7 75 123-202 4-79 (243)
96 KOG0121 Nuclear cap-binding pr 99.4 2.9E-12 6.3E-17 87.7 7.1 78 122-203 34-115 (153)
97 KOG0146 RNA-binding protein ET 99.3 1.6E-12 3.6E-17 100.0 5.6 81 3-83 282-365 (371)
98 KOG0129 Predicted RNA-binding 99.3 6E-11 1.3E-15 99.6 14.4 165 4-188 257-443 (520)
99 KOG0132 RNA polymerase II C-te 99.3 5.2E-12 1.1E-16 110.2 8.1 77 4-83 419-495 (894)
100 smart00362 RRM_2 RNA recogniti 99.3 2.3E-11 5E-16 77.9 8.7 69 126-198 1-71 (72)
101 KOG0112 Large RNA-binding prot 99.3 3.6E-12 7.8E-17 112.9 5.1 158 4-202 370-529 (975)
102 KOG0533 RRM motif-containing p 99.2 3E-10 6.6E-15 88.7 13.7 79 6-84 83-163 (243)
103 KOG0415 Predicted peptidyl pro 99.2 2.5E-11 5.5E-16 97.0 7.3 80 119-202 234-317 (479)
104 KOG0116 RasGAP SH3 binding pro 99.2 9.6E-11 2.1E-15 98.7 11.0 78 6-84 288-368 (419)
105 KOG4208 Nucleolar RNA-binding 99.2 5.6E-11 1.2E-15 88.4 7.5 80 4-83 47-130 (214)
106 smart00360 RRM RNA recognition 99.2 1.3E-10 2.8E-15 74.1 8.1 66 129-198 1-70 (71)
107 KOG0131 Splicing factor 3b, su 99.2 3.7E-11 8E-16 87.5 5.9 78 121-202 6-87 (203)
108 cd00590 RRM RRM (RNA recogniti 99.2 2.4E-10 5.1E-15 73.5 9.1 70 126-199 1-73 (74)
109 KOG4211 Splicing factor hnRNP- 99.2 5.7E-10 1.2E-14 93.2 13.3 182 4-188 101-346 (510)
110 KOG0126 Predicted RNA-binding 99.1 4.4E-12 9.5E-17 92.2 -0.6 74 125-202 36-113 (219)
111 PF13893 RRM_5: RNA recognitio 99.1 1.4E-10 3.1E-15 70.7 6.2 56 141-201 1-56 (56)
112 KOG0153 Predicted RNA-binding 99.1 4.9E-10 1.1E-14 89.6 8.6 76 4-82 226-302 (377)
113 KOG4660 Protein Mei2, essentia 99.1 1.6E-10 3.5E-15 97.8 5.6 166 4-188 73-238 (549)
114 KOG0128 RNA-binding protein SA 99.1 1.1E-11 2.3E-16 109.5 -2.4 133 4-188 665-803 (881)
115 KOG4661 Hsp27-ERE-TATA-binding 99.1 7.2E-10 1.6E-14 94.1 8.5 81 5-85 404-487 (940)
116 KOG0108 mRNA cleavage and poly 99.0 5.2E-10 1.1E-14 94.9 7.5 82 125-210 19-104 (435)
117 KOG4205 RNA-binding protein mu 99.0 3.2E-10 6.8E-15 92.1 5.9 82 6-88 97-181 (311)
118 KOG2193 IGF-II mRNA-binding pr 99.0 5.9E-11 1.3E-15 97.1 1.4 148 7-200 2-153 (584)
119 KOG0111 Cyclophilin-type pepti 99.0 3.2E-10 7E-15 85.1 4.1 78 124-205 10-91 (298)
120 PF11608 Limkain-b1: Limkain b 99.0 3E-09 6.5E-14 67.7 7.7 70 7-83 3-77 (90)
121 COG0724 RNA-binding proteins ( 99.0 2.5E-09 5.5E-14 87.4 9.4 75 124-202 115-193 (306)
122 PF04059 RRM_2: RNA recognitio 99.0 5E-09 1.1E-13 70.2 8.6 76 7-82 2-86 (97)
123 KOG0149 Predicted RNA-binding 99.0 1.7E-09 3.6E-14 82.3 7.0 72 125-201 13-88 (247)
124 KOG4307 RNA binding protein RB 99.0 4.8E-09 1E-13 91.1 10.5 189 5-200 310-510 (944)
125 smart00361 RRM_1 RNA recogniti 98.9 1.4E-08 3E-13 64.8 7.2 57 138-198 2-69 (70)
126 KOG4209 Splicing factor RNPS1, 98.8 6.6E-09 1.4E-13 81.5 5.6 79 4-83 99-180 (231)
127 KOG1365 RNA-binding protein Fu 98.8 9E-08 1.9E-12 77.9 11.6 158 4-181 58-225 (508)
128 KOG4210 Nuclear localization s 98.8 1.5E-08 3.3E-13 82.2 7.0 172 5-207 87-267 (285)
129 KOG0106 Alternative splicing f 98.8 2.6E-08 5.6E-13 76.3 7.0 70 125-202 2-71 (216)
130 KOG4206 Spliceosomal protein s 98.8 5E-08 1.1E-12 74.1 8.4 75 125-203 10-89 (221)
131 KOG4661 Hsp27-ERE-TATA-binding 98.7 9.7E-08 2.1E-12 81.5 10.5 78 122-203 403-484 (940)
132 KOG0151 Predicted splicing reg 98.7 2E-07 4.4E-12 81.4 11.2 78 5-82 173-256 (877)
133 KOG0132 RNA polymerase II C-te 98.7 8.3E-08 1.8E-12 84.6 7.7 77 124-206 421-497 (894)
134 KOG1457 RNA binding protein (c 98.6 5.4E-08 1.2E-12 73.5 4.1 63 7-70 211-273 (284)
135 PF08777 RRM_3: RNA binding mo 98.6 1.8E-07 4E-12 64.2 6.1 71 7-80 2-77 (105)
136 KOG0153 Predicted RNA-binding 98.5 5.4E-07 1.2E-11 72.6 8.2 77 121-203 225-302 (377)
137 KOG0533 RRM motif-containing p 98.5 5.1E-07 1.1E-11 70.8 7.9 75 124-202 83-160 (243)
138 KOG0226 RNA-binding proteins [ 98.5 2E-07 4.2E-12 71.9 5.1 158 10-200 100-266 (290)
139 KOG4454 RNA binding protein (R 98.5 1.2E-07 2.6E-12 71.5 3.3 74 121-198 6-81 (267)
140 KOG1995 Conserved Zn-finger pr 98.5 2E-07 4.4E-12 75.5 4.5 81 4-84 64-155 (351)
141 KOG0226 RNA-binding proteins [ 98.4 3E-07 6.4E-12 70.9 4.3 78 4-81 188-268 (290)
142 KOG0116 RasGAP SH3 binding pro 98.4 1.6E-05 3.6E-10 67.5 15.0 77 122-203 286-366 (419)
143 KOG4676 Splicing factor, argin 98.4 1.2E-08 2.7E-13 82.9 -3.8 64 6-71 151-214 (479)
144 KOG4660 Protein Mei2, essentia 98.4 6.1E-07 1.3E-11 76.6 5.7 72 121-197 72-143 (549)
145 PF11608 Limkain-b1: Limkain b 98.3 4E-06 8.6E-11 53.6 7.5 69 125-203 3-76 (90)
146 KOG4208 Nucleolar RNA-binding 98.3 2.6E-06 5.6E-11 63.9 7.2 66 123-188 48-118 (214)
147 KOG0151 Predicted splicing reg 98.3 1.7E-06 3.8E-11 75.8 7.1 80 118-201 168-254 (877)
148 KOG1548 Transcription elongati 98.3 3.7E-06 8.1E-11 67.8 8.4 75 124-202 134-219 (382)
149 PF04059 RRM_2: RNA recognitio 98.3 9.8E-06 2.1E-10 54.4 8.7 77 125-201 2-84 (97)
150 PF14605 Nup35_RRM_2: Nup53/35 98.2 3.4E-06 7.3E-11 50.2 5.2 53 6-62 1-53 (53)
151 KOG4210 Nuclear localization s 98.2 2E-06 4.4E-11 69.9 5.0 81 3-84 181-265 (285)
152 KOG3152 TBP-binding protein, a 98.2 1.2E-06 2.6E-11 67.7 2.5 70 5-74 73-157 (278)
153 KOG4307 RNA binding protein RB 98.1 1.4E-05 3E-10 70.2 8.5 76 4-79 864-943 (944)
154 KOG2314 Translation initiation 98.1 9E-06 2E-10 69.7 7.2 75 6-80 58-141 (698)
155 COG5175 MOT2 Transcriptional r 98.1 1E-05 2.2E-10 65.1 6.8 75 7-81 115-201 (480)
156 KOG4209 Splicing factor RNPS1, 98.1 2.5E-05 5.4E-10 61.5 8.9 76 122-202 99-178 (231)
157 PF08777 RRM_3: RNA binding mo 98.1 8E-06 1.7E-10 56.1 5.4 59 125-185 2-60 (105)
158 PF05172 Nup35_RRM: Nup53/35/4 98.1 3.4E-05 7.3E-10 52.2 7.7 76 4-81 4-90 (100)
159 KOG1855 Predicted RNA-binding 98.0 2.4E-05 5.1E-10 65.0 6.9 66 5-70 230-311 (484)
160 KOG2416 Acinus (induces apopto 98.0 5.6E-06 1.2E-10 71.3 3.1 77 4-83 442-522 (718)
161 KOG2202 U2 snRNP splicing fact 97.9 4.3E-06 9.2E-11 64.9 2.0 63 21-83 83-148 (260)
162 KOG2202 U2 snRNP splicing fact 97.9 5.9E-05 1.3E-09 58.7 7.1 60 139-202 83-146 (260)
163 KOG0129 Predicted RNA-binding 97.8 7.7E-05 1.7E-09 63.6 7.5 60 4-63 368-431 (520)
164 PF08952 DUF1866: Domain of un 97.8 0.00011 2.4E-09 52.7 7.1 57 21-83 51-107 (146)
165 KOG0128 RNA-binding protein SA 97.8 4.7E-05 1E-09 68.5 6.3 77 6-82 736-814 (881)
166 KOG0115 RNA-binding protein p5 97.8 0.00012 2.5E-09 57.0 7.1 102 57-200 6-110 (275)
167 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00016 3.6E-09 42.9 5.2 52 125-179 2-53 (53)
168 KOG3152 TBP-binding protein, a 97.6 5.2E-05 1.1E-09 58.9 2.6 65 124-188 74-154 (278)
169 KOG1995 Conserved Zn-finger pr 97.5 0.00044 9.5E-09 56.5 7.0 78 121-202 63-152 (351)
170 KOG1996 mRNA splicing factor [ 97.5 0.00037 8E-09 55.3 6.3 62 20-81 300-365 (378)
171 KOG4849 mRNA cleavage factor I 97.4 0.00014 3E-09 59.0 3.8 75 6-80 80-159 (498)
172 KOG2314 Translation initiation 97.4 0.0003 6.5E-09 60.7 5.5 65 124-188 58-131 (698)
173 COG5175 MOT2 Transcriptional r 97.3 0.00076 1.7E-08 54.6 6.7 75 123-201 113-200 (480)
174 KOG1855 Predicted RNA-binding 97.3 0.0011 2.5E-08 55.4 7.7 66 121-186 228-310 (484)
175 PF08675 RNA_bind: RNA binding 97.3 0.0022 4.8E-08 41.2 6.8 56 6-67 9-64 (87)
176 KOG0112 Large RNA-binding prot 97.3 0.00042 9.2E-09 63.0 5.0 78 3-83 452-531 (975)
177 KOG1996 mRNA splicing factor [ 97.2 0.0015 3.3E-08 52.0 6.6 61 138-202 300-365 (378)
178 KOG0115 RNA-binding protein p5 97.1 0.0025 5.4E-08 49.8 7.5 75 7-81 32-112 (275)
179 PF10309 DUF2414: Protein of u 97.1 0.004 8.8E-08 37.9 6.4 54 7-65 6-62 (62)
180 PF07576 BRAP2: BRCA1-associat 97.1 0.0072 1.6E-07 41.8 8.4 66 6-71 13-80 (110)
181 KOG2253 U1 snRNP complex, subu 96.9 9E-05 2E-09 65.0 -2.1 73 4-82 38-110 (668)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.9 0.0014 3E-08 49.7 4.3 79 4-82 5-97 (176)
183 PF05172 Nup35_RRM: Nup53/35/4 96.9 0.0044 9.5E-08 42.0 6.1 63 124-188 6-79 (100)
184 KOG2591 c-Mpl binding protein, 96.7 0.009 2E-07 51.8 7.8 85 54-182 146-232 (684)
185 PF10309 DUF2414: Protein of u 96.6 0.024 5.2E-07 34.6 7.2 54 125-182 6-62 (62)
186 PF03880 DbpA: DbpA RNA bindin 96.6 0.019 4.1E-07 36.7 7.2 58 17-80 12-74 (74)
187 KOG2193 IGF-II mRNA-binding pr 96.6 0.00028 6.1E-09 58.8 -1.7 80 5-84 79-158 (584)
188 PF15023 DUF4523: Protein of u 96.5 0.025 5.3E-07 40.4 7.7 74 4-82 84-161 (166)
189 KOG2068 MOT2 transcription fac 96.5 0.0014 3E-08 53.3 1.7 77 7-83 78-163 (327)
190 PF04847 Calcipressin: Calcipr 96.4 0.013 2.8E-07 44.6 6.7 63 18-83 7-71 (184)
191 KOG0835 Cyclin L [General func 96.4 0.0056 1.2E-07 49.7 4.9 18 45-63 173-190 (367)
192 KOG4285 Mitotic phosphoprotein 96.4 0.013 2.7E-07 47.1 6.7 71 8-83 199-270 (350)
193 KOG2591 c-Mpl binding protein, 96.2 0.0085 1.8E-07 52.0 4.9 69 5-77 174-246 (684)
194 PF08952 DUF1866: Domain of un 96.1 0.033 7.1E-07 40.2 6.9 54 140-202 52-105 (146)
195 KOG0804 Cytoplasmic Zn-finger 96.0 0.024 5.2E-07 48.1 6.5 66 6-71 74-141 (493)
196 KOG2135 Proteins containing th 95.9 0.0048 1E-07 52.4 1.9 76 4-83 370-446 (526)
197 PF08675 RNA_bind: RNA binding 95.8 0.046 1E-06 35.3 5.8 55 125-184 10-64 (87)
198 KOG2416 Acinus (induces apopto 95.3 0.023 5E-07 49.8 4.0 78 122-202 442-520 (718)
199 PF07576 BRAP2: BRCA1-associat 95.2 0.29 6.3E-06 33.9 8.5 64 125-188 14-80 (110)
200 PF07292 NID: Nmi/IFP 35 domai 95.0 0.15 3.2E-06 33.6 6.4 70 48-144 1-72 (88)
201 KOG2135 Proteins containing th 95.0 0.093 2E-06 44.9 6.7 73 124-203 372-445 (526)
202 KOG0835 Cyclin L [General func 94.8 0.052 1.1E-06 44.3 4.6 12 135-146 212-223 (367)
203 KOG4849 mRNA cleavage factor I 94.7 0.068 1.5E-06 43.9 5.1 65 124-188 80-150 (498)
204 PF15023 DUF4523: Protein of u 94.3 0.29 6.3E-06 35.1 6.8 62 122-186 84-149 (166)
205 KOG4574 RNA-binding protein (c 93.9 0.042 9.1E-07 50.3 2.5 70 11-83 303-374 (1007)
206 KOG2318 Uncharacterized conser 93.8 0.39 8.4E-06 42.4 8.1 79 3-81 171-306 (650)
207 PF03467 Smg4_UPF3: Smg-4/UPF3 93.6 0.11 2.3E-06 39.4 3.9 65 124-188 7-81 (176)
208 KOG0804 Cytoplasmic Zn-finger 93.5 0.43 9.4E-06 40.8 7.7 65 124-188 74-141 (493)
209 PF10567 Nab6_mRNP_bdg: RNA-re 93.1 1 2.2E-05 36.5 8.8 76 6-81 15-106 (309)
210 KOG2253 U1 snRNP complex, subu 93.1 0.15 3.2E-06 45.6 4.5 65 119-188 35-99 (668)
211 PF11767 SET_assoc: Histone ly 92.7 0.8 1.7E-05 28.4 6.1 55 17-77 11-65 (66)
212 PF14111 DUF4283: Domain of un 92.3 0.21 4.5E-06 36.8 3.9 112 17-160 28-141 (153)
213 KOG4285 Mitotic phosphoprotein 91.3 0.46 1E-05 38.5 4.9 59 126-188 199-257 (350)
214 PF04847 Calcipressin: Calcipr 91.3 1 2.2E-05 34.4 6.6 61 136-202 7-69 (184)
215 KOG2888 Putative RNA binding p 90.4 0.14 2.9E-06 41.9 1.3 7 141-147 229-235 (453)
216 KOG2068 MOT2 transcription fac 90.3 0.11 2.5E-06 42.5 0.8 64 125-188 78-151 (327)
217 PF11767 SET_assoc: Histone ly 89.9 1.8 3.8E-05 26.9 5.6 50 134-188 10-59 (66)
218 KOG4574 RNA-binding protein (c 89.7 0.25 5.4E-06 45.5 2.5 72 127-202 301-372 (1007)
219 KOG2891 Surface glycoprotein [ 89.4 0.14 3.1E-06 40.8 0.7 67 4-70 147-247 (445)
220 PF03880 DbpA: DbpA RNA bindin 88.5 2.7 5.8E-05 26.7 6.1 59 134-201 11-74 (74)
221 KOG4410 5-formyltetrahydrofola 88.0 1.6 3.6E-05 35.1 5.6 47 6-55 330-377 (396)
222 KOG4019 Calcineurin-mediated s 87.2 0.59 1.3E-05 35.0 2.6 76 5-83 9-90 (193)
223 KOG4483 Uncharacterized conser 86.0 2 4.4E-05 36.3 5.4 56 4-63 389-445 (528)
224 PF03468 XS: XS domain; Inter 85.7 0.84 1.8E-05 32.0 2.7 59 8-67 10-78 (116)
225 PRK14548 50S ribosomal protein 82.1 6.7 0.00015 25.7 5.5 57 9-65 23-81 (84)
226 PRK14548 50S ribosomal protein 80.9 13 0.00028 24.3 6.7 57 126-182 22-81 (84)
227 TIGR03636 L23_arch archaeal ri 79.9 9.6 0.00021 24.5 5.6 56 8-63 15-72 (77)
228 KOG2295 C2H2 Zn-finger protein 78.2 0.27 5.9E-06 43.1 -2.4 70 5-74 230-302 (648)
229 TIGR03636 L23_arch archaeal ri 77.6 16 0.00035 23.5 6.8 57 126-182 15-74 (77)
230 KOG1295 Nonsense-mediated deca 77.3 3.1 6.7E-05 35.1 3.5 66 5-70 6-77 (376)
231 KOG4246 Predicted DNA-binding 76.8 1.2 2.6E-05 41.2 1.1 7 47-53 61-67 (1194)
232 cd04908 ACT_Bt0572_1 N-termina 76.5 15 0.00032 22.4 7.6 49 19-69 14-63 (66)
233 KOG3580 Tight junction protein 76.5 26 0.00056 31.8 8.9 39 122-160 59-98 (1027)
234 PF15513 DUF4651: Domain of un 74.5 8.1 0.00018 23.5 3.9 19 20-38 8-26 (62)
235 KOG4410 5-formyltetrahydrofola 73.8 12 0.00025 30.5 5.7 49 124-173 330-378 (396)
236 KOG2891 Surface glycoprotein [ 72.4 2.9 6.3E-05 33.6 2.1 77 125-201 150-265 (445)
237 KOG2812 Uncharacterized conser 72.1 5.8 0.00013 33.1 3.8 9 258-266 87-95 (426)
238 PF14893 PNMA: PNMA 71.6 5 0.00011 33.7 3.4 51 4-55 16-72 (331)
239 cd04889 ACT_PDH-BS-like C-term 71.1 18 0.00039 21.0 5.6 42 21-62 13-55 (56)
240 KOG4483 Uncharacterized conser 71.1 17 0.00037 31.0 6.3 56 123-181 390-446 (528)
241 PF14026 DUF4242: Protein of u 67.4 30 0.00065 22.1 7.8 62 8-70 2-71 (77)
242 PRK11634 ATP-dependent RNA hel 66.4 62 0.0014 30.1 9.7 60 17-82 498-562 (629)
243 PF09707 Cas_Cas2CT1978: CRISP 65.5 20 0.00043 23.6 4.6 50 4-53 23-72 (86)
244 PF02714 DUF221: Domain of unk 64.9 15 0.00032 30.8 5.1 34 48-83 1-34 (325)
245 PF07292 NID: Nmi/IFP 35 domai 62.4 4.3 9.3E-05 26.8 1.1 25 4-28 50-74 (88)
246 PF12091 DUF3567: Protein of u 62.2 9.9 0.00022 24.7 2.7 17 134-150 60-76 (85)
247 KOG4365 Uncharacterized conser 61.9 1.5 3.3E-05 37.5 -1.3 76 6-82 3-81 (572)
248 PF03468 XS: XS domain; Inter 61.1 21 0.00045 25.0 4.4 50 125-175 9-69 (116)
249 PF07530 PRE_C2HC: Associated 60.9 28 0.0006 21.7 4.5 60 21-83 2-65 (68)
250 KOG2318 Uncharacterized conser 60.9 45 0.00098 30.1 7.2 68 121-188 171-294 (650)
251 KOG4008 rRNA processing protei 60.5 7 0.00015 30.8 2.1 35 4-38 38-72 (261)
252 KOG4213 RNA-binding protein La 59.2 15 0.00034 27.6 3.6 57 18-75 118-179 (205)
253 PF03439 Spt5-NGN: Early trans 58.5 24 0.00053 23.0 4.2 30 41-70 40-69 (84)
254 COG5638 Uncharacterized conser 58.2 50 0.0011 28.5 6.7 38 3-40 143-185 (622)
255 KOG2146 Splicing coactivator S 57.9 28 0.00061 28.3 5.1 30 49-78 56-86 (354)
256 PTZ00191 60S ribosomal protein 56.3 76 0.0016 23.2 6.6 56 126-181 83-141 (145)
257 smart00596 PRE_C2HC PRE_C2HC d 55.9 39 0.00084 21.2 4.4 58 139-203 2-64 (69)
258 PTZ00191 60S ribosomal protein 54.9 52 0.0011 24.0 5.6 53 10-62 85-139 (145)
259 KOG3869 Uncharacterized conser 52.1 4.3 9.4E-05 34.6 -0.2 10 256-265 292-301 (450)
260 PRK11558 putative ssRNA endonu 49.9 37 0.00079 22.9 3.9 52 4-55 25-76 (97)
261 PF11411 DNA_ligase_IV: DNA li 49.8 14 0.0003 19.8 1.5 16 16-31 19-34 (36)
262 KOG1295 Nonsense-mediated deca 48.6 21 0.00045 30.4 3.2 64 125-188 8-78 (376)
263 PF00403 HMA: Heavy-metal-asso 48.4 57 0.0012 19.3 6.7 54 8-64 1-58 (62)
264 PF01071 GARS_A: Phosphoribosy 47.2 62 0.0014 25.0 5.4 48 18-66 24-71 (194)
265 PF10567 Nab6_mRNP_bdg: RNA-re 44.7 63 0.0014 26.6 5.2 55 124-178 15-80 (309)
266 COG0445 GidA Flavin-dependent 44.6 85 0.0018 28.6 6.4 38 122-159 299-336 (621)
267 PRK10629 EnvZ/OmpR regulon mod 44.3 1.2E+02 0.0025 21.7 7.7 72 5-81 34-109 (127)
268 KOG0156 Cytochrome P450 CYP2 s 44.3 50 0.0011 29.7 5.1 59 10-75 36-97 (489)
269 PF14111 DUF4283: Domain of un 44.2 14 0.00031 26.9 1.5 33 9-41 107-140 (153)
270 KOG2295 C2H2 Zn-finger protein 43.6 5.1 0.00011 35.6 -1.1 65 124-188 231-299 (648)
271 PF11823 DUF3343: Protein of u 42.8 35 0.00076 21.4 3.0 27 46-72 2-28 (73)
272 cd04882 ACT_Bt0572_2 C-termina 42.4 72 0.0016 18.8 5.2 47 21-68 14-62 (65)
273 PF02829 3H: 3H domain; Inter 41.5 1.1E+02 0.0024 20.7 5.4 51 17-67 8-58 (98)
274 CHL00123 rps6 ribosomal protei 41.5 1.1E+02 0.0023 20.6 5.4 50 14-63 14-80 (97)
275 COG0150 PurM Phosphoribosylami 41.3 6.5 0.00014 32.9 -0.8 48 20-68 275-322 (345)
276 PF15063 TC1: Thyroid cancer p 40.6 17 0.00037 23.0 1.2 24 10-33 29-52 (79)
277 cd04879 ACT_3PGDH-like ACT_3PG 39.6 82 0.0018 18.6 4.9 40 16-55 9-50 (71)
278 COG3254 Uncharacterized conser 38.8 1.3E+02 0.0028 20.6 5.4 42 21-63 27-69 (105)
279 TIGR01873 cas_CT1978 CRISPR-as 38.5 72 0.0016 21.0 3.9 51 4-54 23-74 (87)
280 PRK09631 DNA topoisomerase IV 38.3 2.2E+02 0.0048 26.6 8.3 60 6-66 220-283 (635)
281 PF08544 GHMP_kinases_C: GHMP 38.3 1E+02 0.0022 19.4 5.9 44 139-183 37-80 (85)
282 PF08734 GYD: GYD domain; Int 37.8 1.2E+02 0.0026 20.0 5.9 46 138-183 22-68 (91)
283 PF08734 GYD: GYD domain; Int 37.5 1.2E+02 0.0026 20.0 6.2 45 20-65 22-67 (91)
284 cd04883 ACT_AcuB C-terminal AC 37.5 96 0.0021 18.8 6.3 50 19-69 14-67 (72)
285 COG0030 KsgA Dimethyladenosine 37.1 51 0.0011 26.8 3.7 32 7-38 96-127 (259)
286 KOG0862 Synaptobrevin/VAMP-lik 35.2 37 0.0008 26.5 2.5 31 21-56 89-120 (216)
287 PF06014 DUF910: Bacterial pro 35.0 25 0.00053 21.5 1.2 18 19-36 3-20 (62)
288 KOG4019 Calcineurin-mediated s 34.8 31 0.00067 26.2 1.9 72 125-202 11-88 (193)
289 PF15407 Spo7_2_N: Sporulation 34.4 15 0.00033 22.8 0.3 25 4-28 25-49 (67)
290 cd04909 ACT_PDH-BS C-terminal 34.0 1.1E+02 0.0024 18.4 5.6 47 19-65 14-62 (69)
291 PRK11230 glycolate oxidase sub 33.9 1.5E+02 0.0032 26.8 6.5 47 20-66 203-255 (499)
292 PF08442 ATP-grasp_2: ATP-gras 33.0 90 0.0019 24.3 4.4 54 18-71 25-81 (202)
293 KOG2187 tRNA uracil-5-methyltr 32.8 46 0.001 29.8 3.0 71 11-83 30-101 (534)
294 COG4010 Uncharacterized protei 32.2 1.5E+02 0.0032 21.6 4.9 47 131-183 118-164 (170)
295 PRK05738 rplW 50S ribosomal pr 31.7 1.6E+02 0.0034 19.6 4.8 31 9-39 22-54 (92)
296 PF02714 DUF221: Domain of unk 31.3 57 0.0012 27.3 3.3 22 165-186 1-22 (325)
297 PF08156 NOP5NT: NOP5NT (NUC12 31.0 18 0.00039 22.5 0.2 39 21-66 27-65 (67)
298 PF00276 Ribosomal_L23: Riboso 30.7 1.2E+02 0.0025 20.1 4.1 49 9-57 22-85 (91)
299 PHA01632 hypothetical protein 30.4 55 0.0012 19.3 2.1 21 9-29 19-39 (64)
300 PF00398 RrnaAD: Ribosomal RNA 30.2 60 0.0013 26.3 3.2 29 6-34 97-127 (262)
301 PF12829 Mhr1: Transcriptional 30.2 58 0.0013 21.7 2.5 52 14-66 20-72 (91)
302 COG4747 ACT domain-containing 29.7 1.7E+02 0.0038 20.6 4.7 49 21-70 84-133 (142)
303 PRK11901 hypothetical protein; 29.6 2.4E+02 0.0051 23.8 6.4 62 121-186 242-308 (327)
304 cd00027 BRCT Breast Cancer Sup 29.5 76 0.0017 18.6 3.0 26 7-32 2-27 (72)
305 PRK08559 nusG transcription an 29.4 2.3E+02 0.005 20.8 5.9 33 33-67 36-68 (153)
306 COG5193 LHP1 La protein, small 29.3 28 0.00061 29.9 1.1 57 7-63 175-244 (438)
307 cd04904 ACT_AAAH ACT domain of 28.4 1.5E+02 0.0033 18.4 6.8 50 18-67 12-65 (74)
308 COG0018 ArgS Arginyl-tRNA synt 27.4 5.1E+02 0.011 24.1 9.2 98 20-160 60-166 (577)
309 PRK15464 cold shock-like prote 26.5 54 0.0012 20.6 1.8 19 31-54 7-25 (70)
310 COG2608 CopZ Copper chaperone 25.8 1.7E+02 0.0037 18.1 5.0 55 6-63 3-61 (71)
311 KOG4008 rRNA processing protei 25.6 67 0.0014 25.5 2.5 31 125-155 41-71 (261)
312 cd04903 ACT_LSD C-terminal ACT 25.6 1.5E+02 0.0033 17.4 6.9 49 19-67 12-64 (71)
313 cd04878 ACT_AHAS N-terminal AC 25.5 1.5E+02 0.0033 17.5 7.0 59 8-66 2-63 (72)
314 PF05189 RTC_insert: RNA 3'-te 24.7 2.1E+02 0.0045 19.3 4.6 45 8-52 12-64 (103)
315 KOG3424 40S ribosomal protein 24.6 1.9E+02 0.0041 20.3 4.2 43 17-60 34-84 (132)
316 PF09902 DUF2129: Uncharacteri 24.5 1.9E+02 0.0042 18.2 4.1 43 21-70 12-54 (71)
317 PF14026 DUF4242: Protein of u 24.5 2E+02 0.0043 18.4 8.1 60 127-187 3-71 (77)
318 cd04905 ACT_CM-PDT C-terminal 24.5 1.9E+02 0.0041 18.2 5.8 49 19-67 14-68 (80)
319 TIGR00755 ksgA dimethyladenosi 24.1 90 0.002 25.1 3.2 24 8-31 96-119 (253)
320 PF09383 NIL: NIL domain; Int 24.0 1.9E+02 0.0041 18.0 4.1 51 16-66 12-67 (76)
321 KOG1999 RNA polymerase II tran 23.8 2.3E+02 0.005 27.8 5.9 30 42-71 207-236 (1024)
322 PRK09937 stationary phase/star 23.6 71 0.0015 20.3 2.0 9 45-53 13-21 (74)
323 PRK15463 cold shock-like prote 23.5 68 0.0015 20.1 1.8 19 31-54 7-25 (70)
324 smart00195 DSPc Dual specifici 23.5 2.3E+02 0.005 19.9 5.0 71 7-79 6-85 (138)
325 PRK14998 cold shock-like prote 23.4 72 0.0016 20.2 2.0 19 31-54 4-22 (73)
326 PTZ00338 dimethyladenosine tra 23.0 92 0.002 25.9 3.0 22 8-29 103-124 (294)
327 PF13689 DUF4154: Domain of un 22.9 3E+02 0.0064 19.8 6.7 36 45-81 26-61 (145)
328 PF01842 ACT: ACT domain; Int 22.9 1.7E+02 0.0037 17.1 5.1 47 19-65 13-61 (66)
329 COG0045 SucC Succinyl-CoA synt 22.9 4.7E+02 0.01 22.7 7.1 66 18-83 26-98 (387)
330 TIGR02381 cspD cold shock doma 22.8 76 0.0016 19.6 2.0 19 31-54 4-22 (68)
331 PRK09507 cspE cold shock prote 22.6 72 0.0016 19.8 1.8 10 45-54 15-24 (69)
332 PRK10943 cold shock-like prote 22.6 69 0.0015 19.9 1.7 10 45-54 15-24 (69)
333 KOG2854 Possible pfkB family c 22.5 4.9E+02 0.011 22.2 7.1 47 4-51 79-125 (343)
334 PRK02886 hypothetical protein; 22.3 2.3E+02 0.005 18.7 4.1 53 5-70 6-58 (87)
335 PRK02302 hypothetical protein; 22.0 2.3E+02 0.005 18.8 4.1 38 27-70 23-60 (89)
336 PF08206 OB_RNB: Ribonuclease 21.8 21 0.00045 21.3 -0.7 37 44-81 7-44 (58)
337 PF01782 RimM: RimM N-terminal 21.6 1.9E+02 0.0042 18.4 3.8 23 45-68 54-76 (84)
338 PRK10905 cell division protein 21.4 2.8E+02 0.006 23.4 5.3 59 124-185 247-309 (328)
339 TIGR00405 L26e_arch ribosomal 21.4 3.2E+02 0.007 19.7 5.6 28 41-68 34-61 (145)
340 cd06405 PB1_Mekk2_3 The PB1 do 21.3 2.4E+02 0.0051 18.1 7.4 63 11-79 13-76 (79)
341 PLN02805 D-lactate dehydrogena 21.2 1.9E+02 0.0042 26.5 4.9 49 18-66 278-332 (555)
342 TIGR00387 glcD glycolate oxida 21.2 2.9E+02 0.0063 24.1 5.9 49 17-65 143-197 (413)
343 PF12007 DUF3501: Protein of u 21.0 1.2E+02 0.0026 23.4 3.0 47 19-69 65-111 (192)
344 PF11910 NdhO: Cyanobacterial 20.9 99 0.0021 19.0 2.0 23 26-55 31-53 (67)
345 COG0150 PurM Phosphoribosylami 20.6 37 0.00081 28.6 0.3 49 137-185 274-322 (345)
346 PRK00274 ksgA 16S ribosomal RN 20.6 1.2E+02 0.0025 24.8 3.2 22 8-29 107-128 (272)
347 COG5507 Uncharacterized conser 20.6 1.6E+02 0.0035 19.8 3.2 19 164-182 68-86 (117)
348 cd04874 ACT_Af1403 N-terminal 20.5 2E+02 0.0044 17.0 6.6 48 19-66 13-61 (72)
349 PF00313 CSD: 'Cold-shock' DNA 20.3 92 0.002 18.8 2.0 11 45-55 12-22 (66)
350 COG5353 Uncharacterized protei 20.2 3.6E+02 0.0079 19.8 5.9 51 7-57 88-154 (161)
351 PF10915 DUF2709: Protein of u 20.2 1.9E+02 0.0042 22.2 3.9 32 50-82 47-78 (238)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=4.4e-33 Score=230.67 Aligned_cols=163 Identities=23% Similarity=0.332 Sum_probs=142.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||.++|+++|+++|..||+|+.|+|+. ++.+++||||+|.++++|++||+.||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4678999999999999999999999999999999954 5678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... .....+|||.|||..+++++|+++|++||.|..+.++.+.
T Consensus 185 ~p~~~-----------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 185 RPGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred ccccc-----------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 64310 0123589999999999999999999999999999998876
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ +||||+|.+.++|++|++.||+..+.+ ....|.|..++.
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g--~~~~l~V~~a~~ 274 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEG--GSQPLTVRLAEE 274 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCC--CceeEEEEECCc
Confidence 43 599999999999999999999998862 146778877763
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=1.3e-31 Score=193.08 Aligned_cols=193 Identities=67% Similarity=1.115 Sum_probs=161.5
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 ~~~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|+++.+++|||+|||.++-+.+|..||.+||.|.+|.|+....+..||||+|+++.+|+.||..-+|..++|+.|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78899999999999999999999999999999999999887777899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.... ......+.+.+.+.+ +.+.+....++...+...+.|.+||++..+++|++++.+.|.|++..+.++.
T Consensus 81 rggr----~s~~~~G~y~gggrg-----Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg 151 (241)
T KOG0105|consen 81 RGGR----SSSDRRGSYSGGGRG-----GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG 151 (241)
T ss_pred cCCC----cccccccccCCCCCC-----CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc
Confidence 8652 222223333333222 2233333445666778999999999999999999999999999999999885
Q ss_pred CCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCCC
Q 024262 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
++.|+|...++.+-|+.+|+...+........|.|.......
T Consensus 152 ---~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~ 193 (241)
T KOG0105|consen 152 ---VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRD 193 (241)
T ss_pred ---ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCc
Confidence 899999999999999999999988866666777776665443
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=3e-31 Score=230.71 Aligned_cols=174 Identities=20% Similarity=0.323 Sum_probs=145.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...|+|||+|||..+++++|+++|..||+|..|.|.. ++.++|||||+|.++++|..|+..|||..|+|+.|.|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3568999999999999999999999999999999954 5788999999999999999999999999999999999854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
......... .+..........+|||+||+..+++++|+++|+.||.|..+.+..+.
T Consensus 185 ~~~p~a~~~------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 185 SNMPQAQPI------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred ccccccccc------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence 432110000 00001111234689999999999999999999999999999999875
Q ss_pred C----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCCC
Q 024262 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
. .|||||+|.+.++|.+|++.||+..++ |+.|+|..+...+
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elg----Gr~LrV~kAi~pP 285 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTPP 285 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC----CeEEEEEecCCCc
Confidence 4 369999999999999999999999998 9999998876433
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.5e-30 Score=218.81 Aligned_cols=162 Identities=22% Similarity=0.343 Sum_probs=141.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.++|||+|||..+++++|+++|+.||+|.+|.|+. ++.++|||||+|.++++|.+||..|||..|.|+.|.|.++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 4678999999999999999999999999999999964 4678999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... .....+|||+|||..+++++|.++|..||.|..+.++.+.
T Consensus 81 ~~~~~-----------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 125 (352)
T TIGR01661 81 RPSSD-----------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN 125 (352)
T ss_pred ccccc-----------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence 65411 0123689999999999999999999999999999888764
Q ss_pred C----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 161 ~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
. .|||||+|.+.++|+.|++.|||..+.+. ...|.+..+.
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~--~~~i~v~~a~ 169 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC--TEPITVKFAN 169 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECC
Confidence 3 36999999999999999999999987621 3567777665
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=7.8e-30 Score=222.84 Aligned_cols=172 Identities=21% Similarity=0.307 Sum_probs=145.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|.+|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 5688999999999999999999999999999999965 46789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.............. ........+|||+|||..+++++|+++|+.||.|..|.++.+.
T Consensus 166 ~~~~~~~~~~~~~~-----------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 166 QAEKNRAAKAATHQ-----------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred chhhhhhhhccccc-----------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 54322111100000 0001125799999999999999999999999999999999876
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ |||||+|.+.++|..|+..|+|..|. ++.|.|.++..
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~----g~~i~v~~a~~ 265 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELA----GRPIKVGYAQD 265 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEEC----CEEEEEEEccC
Confidence 54 69999999999999999999999988 89999999763
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.4e-28 Score=208.07 Aligned_cols=196 Identities=22% Similarity=0.296 Sum_probs=144.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccC--ceEEEEe
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
..++|||+|||..+++++|.++|..||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999998855 35779999999999999999999999999977 5788888
Q ss_pred cCCCCCCCCCC-CC----------CCCCCC-----CCC-CCCC---------C-----------C---------CCCCCC
Q 024262 80 AHGGSGRGPSS-SD----------RRGGYG-----GGG-AGGA---------G-----------G---------AGAGAG 113 (270)
Q Consensus 80 ~~~~~~~~~~~-~~----------~~~~~~-----~~~-~~~~---------~-----------~---------~~~~~~ 113 (270)
+.......... .. ...... +.. .... + . ......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 76543111000 00 000000 000 0000 0 0 000000
Q ss_pred ----------CC-CCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHH
Q 024262 114 ----------AG-RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYA 178 (270)
Q Consensus 114 ----------~~-~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a 178 (270)
.+ ........+.+|||+|||..+++++|.++|++||.|..+.++.+.. .|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00 0000122345799999999999999999999999999999998763 37999999999999999
Q ss_pred HHhcCCccccCccccceeeeecCCCC
Q 024262 179 IRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 179 ~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
+..|||..+. |+.|+|.+....
T Consensus 328 i~~lnG~~~~----gr~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGYTLG----NRVLQVSFKTNK 349 (352)
T ss_pred HHHhCCCEEC----CeEEEEEEccCC
Confidence 9999999999 999999987643
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.9e-28 Score=213.90 Aligned_cols=192 Identities=16% Similarity=0.190 Sum_probs=142.5
Q ss_pred CCCCeEEEcCCCC-CcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. .+|+++|+++|+.||.|..|+++.+ .+|||||+|.++++|..||..|||..|.|++|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4788999999998 6999999999999999999999765 369999999999999999999999999999999999876
Q ss_pred CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEe
Q 024262 83 GSGRGPSSSD---RRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVS 157 (270)
Q Consensus 83 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~--v~~~~~~ 157 (270)
.......... ....+... .....................+..+|||.|||..+++++|+++|+.||. |..+++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~-~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~ 429 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDY-SSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFF 429 (481)
T ss_pred ccccCCCCCcCcCCCcccccc-cCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence 5322111100 00000000 0000000000000111112346689999999999999999999999998 7778776
Q ss_pred eCCC--CcEEEEEecChhhHHHHHHhcCCccccCccccc------eeeeecCC
Q 024262 158 RDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG------RITVKRYD 202 (270)
Q Consensus 158 ~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~------~i~v~~~~ 202 (270)
.... .++|||+|.+.++|.+|+..|||..|. +. .|+|.+++
T Consensus 430 ~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~----~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 430 PKDNERSKMGLLEWESVEDAVEALIALNHHQLN----EPNGSAPYHLKVSFST 478 (481)
T ss_pred cCCCCcceeEEEEcCCHHHHHHHHHHhcCCccC----CCCCCccceEEEEecc
Confidence 5432 369999999999999999999999998 44 47777764
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=7.9e-29 Score=216.32 Aligned_cols=170 Identities=15% Similarity=0.144 Sum_probs=140.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHh--cCCccccCceEEEEecCC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRG--RDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~--l~~~~~~g~~l~v~~~~~ 82 (270)
||++|||+|||..+++++|+++|+.||.|..|.++.+ ++||||+|.++++|..||.. +++..|.|++|.|.++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 6899999999999999999999999999999998754 78999999999999999986 478999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 024262 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
........ ... ..........|+|.||+..+++++|.++|+.||.|..|.++.+...
T Consensus 78 ~~~~~~~~----~~~-------------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~ 134 (481)
T TIGR01649 78 QEIKRDGN----SDF-------------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV 134 (481)
T ss_pred cccccCCC----Ccc-------------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc
Confidence 42111100 000 0001112357999999999999999999999999999999887766
Q ss_pred cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 ~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
++|||+|.+.++|.+|++.|||..|.+. ...|+|++++
T Consensus 135 ~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~l~v~~sk 172 (481)
T TIGR01649 135 FQALVEFESVNSAQHAKAALNGADIYNG--CCTLKIEYAK 172 (481)
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCC--ceEEEEEEec
Confidence 7999999999999999999999999621 3467777765
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=4.4e-28 Score=216.56 Aligned_cols=158 Identities=27% Similarity=0.452 Sum_probs=138.5
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+|||+|||+++|+++|+++|+.||.|.+|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999965 46789999999999999999999999999999999999875321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--
Q 024262 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-- 162 (270)
.. ......+|||.|||.++++++|.++|+.||.|..|++..+..+
T Consensus 82 ~~---------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~s 128 (562)
T TIGR01628 82 SL---------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKS 128 (562)
T ss_pred cc---------------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCc
Confidence 10 0011257999999999999999999999999999999887543
Q ss_pred -cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 163 -TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 -~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|||||+|++.++|.+|+++++|..+. +..|.|....
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~~----~~~i~v~~~~ 165 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLLN----DKEVYVGRFI 165 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEec----CceEEEeccc
Confidence 79999999999999999999999988 8888876554
No 10
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=1e-27 Score=208.45 Aligned_cols=191 Identities=22% Similarity=0.295 Sum_probs=140.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCcccc-CceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
..|+|||+|||.++++++|+++|++||.|.+++|+.+ +.++|||||+|.++++|++||+.||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4689999999999999999999999999999999764 788999999999999999999999999885 7777776553
Q ss_pred CCCCCC----CC-CC-----CCCCCC----------CC----CCCCCCC-------------------CC----CC----
Q 024262 82 GGSGRG----PS-SS-----DRRGGY----------GG----GGAGGAG-------------------GA----GA---- 110 (270)
Q Consensus 82 ~~~~~~----~~-~~-----~~~~~~----------~~----~~~~~~~-------------------~~----~~---- 110 (270)
...... +. .. .....+ .. ....+.+ +. +.
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 211000 00 00 000000 00 0000000 00 00
Q ss_pred ---CCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCc
Q 024262 111 ---GAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 111 ---~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~ 185 (270)
...............+|||+||+..+++++|+++|+.| |.|..|.++.+ ||||+|++.++|.+|++.||+.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~ 292 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGK 292 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCC
Confidence 00000001112335689999999999999999999999 99999988763 9999999999999999999999
Q ss_pred cccCccccceeeeecCCC
Q 024262 186 EFRNPWARGRITVKRYDR 203 (270)
Q Consensus 186 ~~~~~~~~~~i~v~~~~~ 203 (270)
.|. ++.|.|.+++.
T Consensus 293 ~i~----Gr~I~V~~Akp 306 (578)
T TIGR01648 293 ELE----GSEIEVTLAKP 306 (578)
T ss_pred EEC----CEEEEEEEccC
Confidence 999 99999998864
No 11
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3e-28 Score=185.73 Aligned_cols=170 Identities=20% Similarity=0.285 Sum_probs=145.6
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
-|||+.|.+.++-++|++.|..||+|.+++++. |++++||+||.|.+.++|+.||..|||..|+++.|+..++.-++
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 489999999999999999999999999999955 58999999999999999999999999999999999999987653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcE
Q 024262 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~ 164 (270)
.... ...-.....+.......++|||+|++..+++++|++.|+.||+|..|.+.++. ||
T Consensus 144 ~e~n-------------------~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GY 202 (321)
T KOG0148|consen 144 SEMN-------------------GKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GY 202 (321)
T ss_pred cccC-------------------CCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ce
Confidence 1100 00112223344455667999999999999999999999999999999999987 79
Q ss_pred EEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 165 afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+||.|++.|.|..||..||+.+|. |..++....+
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~----G~~VkCsWGK 236 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIG----GQLVRCSWGK 236 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeC----ceEEEEeccc
Confidence 999999999999999999999998 7777765554
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=2.7e-27 Score=209.64 Aligned_cols=186 Identities=18% Similarity=0.289 Sum_probs=137.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcc------------cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY------------GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~------------G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
+...++|||+|||+.+|+++|.++|.+| +.|..+.+. ..++||||+|.++++|..||. |||+.|
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 3678899999999999999999999975 234444443 348999999999999999996 999999
Q ss_pred cCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC
Q 024262 71 DGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD 150 (270)
Q Consensus 71 ~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~ 150 (270)
.|..|.|.................. ........ ................+|||+|||..+++++|.++|+.||.
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~ 321 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQ----KNPDDNAK--NVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGD 321 (509)
T ss_pred eCceeEecCccccCCccccCCCCCC----CCCccccc--ccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 9999999866544211110000000 00000000 00000011112245679999999999999999999999999
Q ss_pred eeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 151 VCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 151 v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|..+.++.+.. .|||||+|.+.++|..|++.|+|..+. +..|.|..+.
T Consensus 322 i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~----~~~l~v~~a~ 373 (509)
T TIGR01642 322 LKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG----DNKLHVQRAC 373 (509)
T ss_pred eeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEECc
Confidence 99999887653 369999999999999999999999998 8889988875
No 13
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=3.4e-28 Score=187.22 Aligned_cols=146 Identities=33% Similarity=0.591 Sum_probs=135.9
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
-.|||+|||.++++.+|+.||++||+|.++.|+ |.||||..++...|..||..|||..|+|..|.|+.++++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKsk- 76 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKSK- 76 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccCC-
Confidence 479999999999999999999999999999998 56999999999999999999999999999999999987621
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEE
Q 024262 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGV 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~af 166 (270)
...+|+|+||...++.++|+..|++||+|+.++|.++ |+|
T Consensus 77 ------------------------------------~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~f 116 (346)
T KOG0109|consen 77 ------------------------------------ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAF 116 (346)
T ss_pred ------------------------------------CccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeE
Confidence 2368999999999999999999999999999999996 999
Q ss_pred EEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 167 VDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 167 v~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|.|+-.++|..|+..|++.++. |+++.|..+.
T Consensus 117 vh~d~~eda~~air~l~~~~~~----gk~m~vq~st 148 (346)
T KOG0109|consen 117 VHFDRAEDAVEAIRGLDNTEFQ----GKRMHVQLST 148 (346)
T ss_pred EEEeeccchHHHHhcccccccc----cceeeeeeec
Confidence 9999999999999999999999 8888876654
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=7.9e-27 Score=206.63 Aligned_cols=187 Identities=17% Similarity=0.262 Sum_probs=141.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+..++|||+|||..+++++|.++|+.||.|..+.|+. ++.++|||||+|.+.++|..||..|||+.|+|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3468999999999999999999999999999998854 5778999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCC----------CHHHHHHHHHhcC
Q 024262 81 HGGSGRGPSSSDR-RGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA----------SWQDLKDHMRKAG 149 (270)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~----------~~~~l~~~f~~~g 149 (270)
............. ....... ..+...........++..|+|.|+.... ..++|+++|++||
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G 444 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLL--------AKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYG 444 (509)
T ss_pred ccCCCCCCccccccccccccc--------cccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcC
Confidence 7542211111000 0000000 0000000011122356789999996421 2367999999999
Q ss_pred CeeEEEEeeCCC-------CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 150 DVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 150 ~v~~~~~~~~~~-------~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.|..|.|+.+.. .|++||+|.+.++|.+|+..|||..|. |+.|.+.+..
T Consensus 445 ~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~----gr~v~~~~~~ 500 (509)
T TIGR01642 445 PLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN----DRVVVAAFYG 500 (509)
T ss_pred CeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEeC
Confidence 999999987521 269999999999999999999999998 9999887764
No 15
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.8e-28 Score=194.73 Aligned_cols=168 Identities=22% Similarity=0.353 Sum_probs=143.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccc---cCceEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRV 77 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v 77 (270)
.++-+|||+-||..++|.||+++|++||.|.+|.|.+ ++.++|||||.|.+.++|.+|+..||++.. ...+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4567899999999999999999999999999999965 578899999999999999999999998655 3568888
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 024262 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~ 157 (270)
+++....++. ....+|||+-|+..++|.+++++|.+||.|++|.|+
T Consensus 112 k~Ad~E~er~----------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 112 KYADGERERI----------------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred cccchhhhcc----------------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 8887652221 234789999999999999999999999999999999
Q ss_pred eCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCCCC
Q 024262 158 RDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 158 ~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
++..+ |||||+|.+.+.|..|++.|||.... ......+-|++++-.++
T Consensus 158 rd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm-eGcs~PLVVkFADtqkd 208 (510)
T KOG0144|consen 158 RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM-EGCSQPLVVKFADTQKD 208 (510)
T ss_pred ecccccccceeEEEEehHHHHHHHHHhhccceee-ccCCCceEEEecccCCC
Confidence 98776 79999999999999999999997654 22366778888875443
No 16
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.4e-27 Score=211.80 Aligned_cols=179 Identities=22% Similarity=0.364 Sum_probs=146.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCcccc----CceEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRV 77 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l~v 77 (270)
...++|||+|||.++|+++|+++|+.||.|..+.+..+ +..+|||||+|.+.++|.+|++.|||..|. |+.|.|
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v 255 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYV 255 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEe
Confidence 34578999999999999999999999999999999654 677899999999999999999999999999 999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 024262 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~ 157 (270)
..+.................. ..........+|||.||+..+++++|+++|+.||.|..++++
T Consensus 256 ~~a~~k~er~~~~~~~~~~~~-----------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 256 GRAQKRAEREAELRRKFEELQ-----------------QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred ecccChhhhHHHHHhhHHhhh-----------------hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 988765332111100000000 001112335689999999999999999999999999999999
Q ss_pred eCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 158 RDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 158 ~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+..+ |||||+|.+.++|.+|+..|||..+. |+.|.|..+.+
T Consensus 319 ~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~----gk~l~V~~a~~ 363 (562)
T TIGR01628 319 LDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG----GKPLYVALAQR 363 (562)
T ss_pred ECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC----CceeEEEeccC
Confidence 87533 79999999999999999999999998 99999988764
No 17
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=2.9e-27 Score=170.28 Aligned_cols=165 Identities=22% Similarity=0.309 Sum_probs=142.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.-.||||+||+..++++.|++||-++|+|.++++.. +...+|||||+|.++|+|+-|++.||.+.|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4568999999999999999999999999999999955 4567999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEeeC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~ 159 (270)
... +.....+..|||+||.+.+++..|-+.|+.||.+.. -+++.+
T Consensus 87 s~~----------------------------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 87 SAH----------------------------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred ccc----------------------------------cccccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 622 111223478999999999999999999999999876 466766
Q ss_pred CCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCCCC
Q 024262 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 160 ~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
..+ +|+||.|.+.+.+..|+..|+|..+. .+.|.|..+.+...
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLC----NRPITVSYAFKKDT 179 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhc----CCceEEEEEEecCC
Confidence 653 59999999999999999999999999 88888888765443
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1e-26 Score=188.80 Aligned_cols=190 Identities=23% Similarity=0.301 Sum_probs=142.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccc-cCceEEEEec
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNF-DGCRLRVELA 80 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g~~l~v~~~ 80 (270)
..|-|||+.||.++.|++|.-||+..|+|-++.|+.+ |.++|||||.|.+.++|+.||+.||+..| -|+.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 3688999999999999999999999999999999764 78999999999999999999999999999 5999988877
Q ss_pred CCCCCCCCC--CCCCC------------C------CCCCCC----CCCCCC-----------------------CCCC--
Q 024262 81 HGGSGRGPS--SSDRR------------G------GYGGGG----AGGAGG-----------------------AGAG-- 111 (270)
Q Consensus 81 ~~~~~~~~~--~~~~~------------~------~~~~~~----~~~~~~-----------------------~~~~-- 111 (270)
.......-. ++... . -+.... ..+.+. -+..
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 533211000 00000 0 000000 000000 0000
Q ss_pred -----CCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc
Q 024262 112 -----AGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 112 -----~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
+..............|||.||+.++|++.|+++|+.||.|..|+.++| ||||.|.+.++|.+|++.+||.+
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngke 317 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKE 317 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCce
Confidence 000011112233468999999999999999999999999999998877 99999999999999999999999
Q ss_pred ccCccccceeeeecCC
Q 024262 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
|. |..|.|..++
T Consensus 318 ld----G~~iEvtLAK 329 (506)
T KOG0117|consen 318 LD----GSPIEVTLAK 329 (506)
T ss_pred ec----CceEEEEecC
Confidence 99 8888877765
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6.2e-26 Score=198.31 Aligned_cols=193 Identities=22% Similarity=0.316 Sum_probs=141.6
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+++|||+|||..+++++|.++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||+.|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999965 357799999999999999999999999999999999999764
Q ss_pred CCCCCCCCCCCCC----CCCC------------------CCCCCCCCCCCCC----------------------------
Q 024262 83 GSGRGPSSSDRRG----GYGG------------------GGAGGAGGAGAGA---------------------------- 112 (270)
Q Consensus 83 ~~~~~~~~~~~~~----~~~~------------------~~~~~~~~~~~~~---------------------------- 112 (270)
............. ...+ ...++....+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 3221111000000 0000 0000000000000
Q ss_pred -CCCCCCC----CCCCcceEEEeCCCCCCC----------HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHH
Q 024262 113 -GAGRFGI----SRHSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKY 177 (270)
Q Consensus 113 -~~~~~~~----~~~~~~~l~V~nl~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~ 177 (270)
....... ....+.+|+|.||....+ .++|.++|.+||.|+.+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0000000 124567899999965544 3679999999999999999877667899999999999999
Q ss_pred HHHhcCCccccCccccceeeeecCC
Q 024262 178 AIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 178 a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|++.|||..++ |+.|.+.+..
T Consensus 426 A~~~lnGr~f~----gr~i~~~~~~ 446 (457)
T TIGR01622 426 AFQALNGRYFG----GKMITAAFVV 446 (457)
T ss_pred HHHHhcCcccC----CeEEEEEEEc
Confidence 99999999999 9999887654
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=176.23 Aligned_cols=164 Identities=22% Similarity=0.333 Sum_probs=143.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+..+.|.|.-||.++|+|+|+.||...|+|+.++++. +|.+.||+||.|-+++||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4456789999999999999999999999999999955 5889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... ...+..|||.+||..+|..+|+++|+.||.|+...|..+.
T Consensus 119 RPSs~-----------------------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 119 RPSSD-----------------------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred cCChh-----------------------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 87522 1233689999999999999999999999999887777665
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCC
Q 024262 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
-+ |.+||.|+...+|++|+..|||..-.+ ....|.|+++..+
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g--~tepItVKFannP 209 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG--CTEPITVKFANNP 209 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCCC--CCCCeEEEecCCc
Confidence 44 599999999999999999999988663 3567888888754
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.8e-26 Score=187.49 Aligned_cols=184 Identities=18% Similarity=0.273 Sum_probs=147.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..||||++||+.++.++|.++|+.+|+|..+.+..+ +..+||+||.|.=.||++.|+..+++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 389999999999999999999999999999998553 46799999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 024262 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
.................... ...........+.+.|+|.|||..+...+|+.+|+.||.|..|.|+....+
T Consensus 85 R~r~e~~~~~e~~~veK~~~---------q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg 155 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIE---------QKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG 155 (678)
T ss_pred cccchhcccccchhhhcccc---------cCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC
Confidence 53322111000000000000 000000111234689999999999999999999999999999999987766
Q ss_pred ---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 ---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|||||+|....+|..|++.+|+.+|. |+.|.|+++-
T Consensus 156 klcGFaFV~fk~~~dA~~Al~~~N~~~i~----gR~VAVDWAV 194 (678)
T KOG0127|consen 156 KLCGFAFVQFKEKKDAEKALEFFNGNKID----GRPVAVDWAV 194 (678)
T ss_pred CccceEEEEEeeHHHHHHHHHhccCceec----CceeEEeeec
Confidence 69999999999999999999999999 9999988865
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.7e-24 Score=177.90 Aligned_cols=197 Identities=19% Similarity=0.296 Sum_probs=139.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEe--cCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+--.|+|.|||+.|.+.+|..+|+.||.|.+|.|. .++...|||||+|.+.-+|..|+..+|+.+|+|++|.|.|+..
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 35689999999999999999999999999999994 4677789999999999999999999999999999999999975
Q ss_pred CCCCCCCC-------------CCCCC---CCCCCCCCC-------C----CC---------CCCC----------CC---
Q 024262 83 GSGRGPSS-------------SDRRG---GYGGGGAGG-------A----GG---------AGAG----------AG--- 113 (270)
Q Consensus 83 ~~~~~~~~-------------~~~~~---~~~~~~~~~-------~----~~---------~~~~----------~~--- 113 (270)
+..-.... ..... ......... . .+ .... ++
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 53211100 00000 000000000 0 00 0000 00
Q ss_pred CCCC------CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcC
Q 024262 114 AGRF------GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 114 ~~~~------~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~ 183 (270)
.... ......+.+|||.|||+++|+++|.++|++||+|.++.+..++.+ |.|||.|.+..+|..||....
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 0000 111223579999999999999999999999999999999888766 699999999999999998762
Q ss_pred Ccccc--CccccceeeeecC
Q 024262 184 DTEFR--NPWARGRITVKRY 201 (270)
Q Consensus 184 g~~~~--~~~~~~~i~v~~~ 201 (270)
-..-. ..+.|+-+.|..+
T Consensus 356 pa~e~g~~ll~GR~Lkv~~A 375 (678)
T KOG0127|consen 356 PASEDGSVLLDGRLLKVTLA 375 (678)
T ss_pred ccCCCceEEEeccEEeeeec
Confidence 11111 1123666666544
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=9.5e-24 Score=160.45 Aligned_cols=192 Identities=21% Similarity=0.262 Sum_probs=144.7
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccC--ceEEEEecC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAH 81 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~ 81 (270)
..|||.+||..+|..+|.++|++||.|+.-.|.. ++.++|.+||.|...++|+.||+.|||..--| .+|.|+++.
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 5799999999999999999999999998877743 57889999999999999999999999988765 579999998
Q ss_pred CCCCCCCCCC-CCCCC--CCCCCCC-CCC-----------------CCCCCC-------CCCCCCCCCCCcceEEEeCCC
Q 024262 82 GGSGRGPSSS-DRRGG--YGGGGAG-GAG-----------------GAGAGA-------GAGRFGISRHSEYRVIVRGLP 133 (270)
Q Consensus 82 ~~~~~~~~~~-~~~~~--~~~~~~~-~~~-----------------~~~~~~-------~~~~~~~~~~~~~~l~V~nl~ 133 (270)
.......... ..... ....+++ ... .-.... .+...+.....+++|||.||.
T Consensus 208 nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLs 287 (360)
T KOG0145|consen 208 NPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLS 287 (360)
T ss_pred CcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecC
Confidence 7643221100 00000 0000000 000 000000 001112233457999999999
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
++..+..|.++|..||.|..|++++|..+ ||+||.+.+.++|..|+..|||..++ ++.+.|.+..
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg----~rvLQVsFKt 356 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG----DRVLQVSFKT 356 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc----ceEEEEEEec
Confidence 99999999999999999999999998764 79999999999999999999999998 8888887654
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5.1e-25 Score=174.84 Aligned_cols=170 Identities=20% Similarity=0.331 Sum_probs=142.6
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
|.|||+.|.+.+.|+.|+..|..||+|+.|.+.. |++.+|||||+|+-+|.|+.|++.|||.+++|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 7899999999999999999999999999999944 6789999999999999999999999999999999999854432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-
Q 024262 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
....+-. +........-+.|||..+.+++.++||+..|+.||+|..|.+...+.+
T Consensus 194 pQAQpiI------------------------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 194 PQAQPII------------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 249 (544)
T ss_pred cccchHH------------------------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC
Confidence 1100000 000111223368999999999999999999999999999999988654
Q ss_pred ---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCC
Q 024262 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 163 ---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
||+||+|.+.....+|+..||-..++ |..++|...--+
T Consensus 250 ~HkGyGfiEy~n~qs~~eAiasMNlFDLG----GQyLRVGk~vTP 290 (544)
T KOG0124|consen 250 GHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTP 290 (544)
T ss_pred CccceeeEEeccccchHHHhhhcchhhcc----cceEecccccCC
Confidence 69999999999999999999999998 899888765433
No 25
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=3.7e-24 Score=162.09 Aligned_cols=163 Identities=40% Similarity=0.699 Sum_probs=135.6
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||++||..+.+.+|..||..||.|.++.|+ .+|+||+|.++.+|..|+..||+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 479999999999999999999999999999997 579999999999999999999999999999888888754111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEE
Q 024262 87 GPSSSDRRGGYGGGGAGGAGGAGAGA-GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYG 165 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~a 165 (270)
. + .+.++... .......+....+.+.|.+++..+.+++|.++|..+|.+....+.. +++
T Consensus 77 ~---------------g-~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~ 136 (216)
T KOG0106|consen 77 R---------------G-RPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFA 136 (216)
T ss_pred c---------------C-CCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----ccc
Confidence 1 0 00000111 2334455667789999999999999999999999999996555533 489
Q ss_pred EEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 166 VVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 166 fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
||+|...++|..|+..|++..+. ++.|.+
T Consensus 137 ~v~Fs~~~da~ra~~~l~~~~~~----~~~l~~ 165 (216)
T KOG0106|consen 137 FVEFSEQEDAKRALEKLDGKKLN----GRRISV 165 (216)
T ss_pred ceeehhhhhhhhcchhccchhhc----Cceeee
Confidence 99999999999999999999999 888888
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=1.2e-22 Score=145.62 Aligned_cols=78 Identities=27% Similarity=0.403 Sum_probs=72.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.++|||+||+..+++.||+.+|..||+|..|.|..+++ |||||+|+++.+|+.|+..|+|..|. |..|+|+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-GfAFVEFed~RDA~DAvr~LDG~~~c----G~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-GFAFVEFEDPRDAEDAVRYLDGKDIC----GSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-CceEEeccCcccHHHHHhhcCCcccc----CceEEEEeecC
Confidence 47999999999999999999999999999999998554 69999999999999999999999999 99999999885
Q ss_pred CCC
Q 024262 204 SPS 206 (270)
Q Consensus 204 ~~~ 206 (270)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 443
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.4e-22 Score=166.70 Aligned_cols=152 Identities=26% Similarity=0.401 Sum_probs=136.0
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||+ +++|+.+|.++|+.+|+|..+.+..+-.+.|||||.|.++++|.+||..||...|.|++|.|-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 478999 899999999999999999999994432389999999999999999999999999999999999987541
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--cE
Q 024262 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TY 164 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~ 164 (270)
..+||.||+++++..+|.++|+.||.|+.|++..+..+ ||
T Consensus 77 --------------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~ 118 (369)
T KOG0123|consen 77 --------------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY 118 (369)
T ss_pred --------------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee
Confidence 22999999999999999999999999999999998876 68
Q ss_pred EEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCCCC
Q 024262 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 165 afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
||+|++.++|.+|++.|||..+. +..|-|........
T Consensus 119 -FV~f~~e~~a~~ai~~~ng~ll~----~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 119 -FVQFESEESAKKAIEKLNGMLLN----GKKIYVGLFERKEE 155 (369)
T ss_pred -EEEeCCHHHHHHHHHHhcCcccC----CCeeEEeeccchhh
Confidence 99999999999999999999998 88888766654433
No 28
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.89 E-value=2.1e-21 Score=145.67 Aligned_cols=196 Identities=18% Similarity=0.235 Sum_probs=147.0
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHH----HhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEE
Q 024262 2 SGRFSRTIYVGNLPSDIREYEVED----LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 2 ~~~~s~~i~V~nlp~~~t~~~l~~----~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+-.++.||||.||+.-+..++|+. ||++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|+.|.|++|.|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 336778999999999999999888 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCC----CCCCCCC--------CCCCCCCCCC--CCCCCCCCC-CCCCCCcceEEEeCCCCCCCHHHHH
Q 024262 78 ELAHGGSGRGPSSS----DRRGGYG--------GGGAGGAGGA--GAGAGAGRF-GISRHSEYRVIVRGLPSSASWQDLK 142 (270)
Q Consensus 78 ~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~l~V~nl~~~~~~~~l~ 142 (270)
+|++.......... ....... ......+... .....+.+. .....+...+++.|||..++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99987654322210 0000000 0000000000 000001111 2335667899999999999999999
Q ss_pred HHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 143 DHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 143 ~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+|.+|.....+.++.... +.|||+|.+...|..|...+++..+.. ...+.+..+
T Consensus 165 ~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it~---~~~m~i~~a 219 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKITK---KNTMQITFA 219 (221)
T ss_pred HHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceecc---CceEEeccc
Confidence 9999999888888776554 499999999999999999999988863 444444443
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.3e-22 Score=173.66 Aligned_cols=166 Identities=23% Similarity=0.418 Sum_probs=139.7
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CC----CCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+|||.||++.+|.++|..+|..+|.|..+.|.. ++ .+.|||||+|.++++|+.|++.|+|..|+|+.|.|+++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998843 22 235999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024262 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
..+..... ...........|.|.|||..++..+++++|..||.+..|.++....
T Consensus 597 ~k~~~~~g--------------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~ 650 (725)
T KOG0110|consen 597 NKPASTVG--------------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIG 650 (725)
T ss_pred Cccccccc--------------------------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhc
Confidence 33111100 1112222357999999999999999999999999999999987622
Q ss_pred ----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 162 ----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 162 ----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.|||||+|-++.+|..|+.+|..+.+- |+++-++++..
T Consensus 651 k~a~rGF~Fv~f~t~~ea~nA~~al~STHly----GRrLVLEwA~~ 692 (725)
T KOG0110|consen 651 KGAHRGFGFVDFLTPREAKNAFDALGSTHLY----GRRLVLEWAKS 692 (725)
T ss_pred chhhccceeeeccCcHHHHHHHHhhccccee----chhhheehhcc
Confidence 269999999999999999999999888 89988888763
No 30
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=7.4e-20 Score=159.92 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||+|||+++++++|+++|+.||.|..+.|.. ++..+|||||+|.+.++|.+||..||++.|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 36789999999999999999999999999999999999987
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 54
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=4.9e-21 Score=159.92 Aligned_cols=192 Identities=23% Similarity=0.355 Sum_probs=137.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
|-..|||+||.+++++++|+.+|+.||.|..|.+.. +|.++||+||+|.+.++|..|+..|||+.|.|+.|+|....
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 334499999999999999999999999999999954 58999999999999999999999999999999999998876
Q ss_pred CCCCCCCC---CCCCC----CCCCCCCCCCC-------CCCC----------------CCCC---CC----CCCCCC---
Q 024262 82 GGSGRGPS---SSDRR----GGYGGGGAGGA-------GGAG----------------AGAG---AG----RFGISR--- 121 (270)
Q Consensus 82 ~~~~~~~~---~~~~~----~~~~~~~~~~~-------~~~~----------------~~~~---~~----~~~~~~--- 121 (270)
........ ..... .+..-+..+.. .+.+ .... .+ ....+.
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence 55333221 11111 01100001100 0000 0000 00 011122
Q ss_pred ----CCcceEEEeCCCCCCC----------HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccc
Q 024262 122 ----HSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 122 ----~~~~~l~V~nl~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~ 187 (270)
.++.++.+.|+-...+ .+++.+.+.+||.|++|.+.++.. |+.||.|.+.+.|..|+.+|||.+|
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF 515 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWF 515 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhh
Confidence 4566777777643333 257889999999998888877766 7999999999999999999999999
Q ss_pred cCccccceeeeecC
Q 024262 188 RNPWARGRITVKRY 201 (270)
Q Consensus 188 ~~~~~~~~i~v~~~ 201 (270)
. |+.|...+-
T Consensus 516 ~----gr~Ita~~~ 525 (549)
T KOG0147|consen 516 A----GRMITAKYL 525 (549)
T ss_pred c----cceeEEEEe
Confidence 9 888876543
No 32
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=7.4e-21 Score=158.75 Aligned_cols=168 Identities=27% Similarity=0.437 Sum_probs=144.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++...|||.||+++++..+|.++|+.||+|..|++..+ ..++|| ||+|+++++|.+|+..+||..+.|+.|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 45556999999999999999999999999999999654 348999 9999999999999999999999999999998887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 024262 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
...+...... ....-..++|.|++...+++.|..+|..+|.|..+.++.+..+
T Consensus 153 ~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g 205 (369)
T KOG0123|consen 153 KEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG 205 (369)
T ss_pred hhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC
Confidence 6544332211 1122357899999999999999999999999999999987654
Q ss_pred ---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+|+||.|+++++|..|++.|++..+. +..+.|..+.+
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~----~~~~~V~~aqk 245 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFG----DKELYVGRAQK 245 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCC----ccceeeccccc
Confidence 69999999999999999999999987 67777766654
No 33
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=3.4e-20 Score=135.30 Aligned_cols=82 Identities=24% Similarity=0.479 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..+++|||+|||+.+++++|+++|.+||+|.++.|+. ++.+++||||+|.++++|+.||+.||+..|+|+.|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4688999999999999999999999999999999964 4678999999999999999999999999999999999998
Q ss_pred CCCCC
Q 024262 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76533
No 34
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=8.2e-20 Score=131.18 Aligned_cols=78 Identities=45% Similarity=0.715 Sum_probs=72.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.-.++|||+||+..+++.||..+|..||+|..|-|.. .+.|||||||+++.+|..|+..|+|..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3478999999999999999999999999999987754 55899999999999999999999999999999999998765
No 35
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.85 E-value=1.3e-19 Score=146.12 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=153.0
Q ss_pred CCeEEEcCCCCC-cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 6 SRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 s~~i~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++.|.|.||... +|++-|..+|.-||+|..|+|...+ +..|+|+|.+...|+.|+..|+|..|.|++|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 689999999766 9999999999999999999997654 3689999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcE
Q 024262 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~ 164 (270)
...+.......++........-.....++...+.....+..+|++.|+|.++++++|+.+|..-|-.+.......+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 65555444443333333222222223333444455556778999999999999999999999999887766555555569
Q ss_pred EEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 165 afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|++.+++.++|..|+..+|+..++ .+..++|.+++
T Consensus 455 al~q~~sveeA~~ali~~hnh~lg---en~hlRvSFSk 489 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLG---ENHHLRVSFSK 489 (492)
T ss_pred eecccCChhHhhhhccccccccCC---CCceEEEEeec
Confidence 999999999999999999999887 35577887764
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=1.5e-20 Score=151.60 Aligned_cols=167 Identities=18% Similarity=0.313 Sum_probs=137.9
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEE
Q 024262 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 1 ~~~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
|+..+.++|||++|+..+++|.|++.|.+||+|.++.++. ++.+++|+||+|++++.+.++|. ...+.|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 3456899999999999999999999999999999999976 47889999999999999999999 6678999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 024262 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~ 157 (270)
+.+.+........ ....+..|||++||..++++++++.|++||.|..+.++
T Consensus 80 k~av~r~~~~~~~-----------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~ 130 (311)
T KOG4205|consen 80 KRAVSREDQTKVG-----------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIM 130 (311)
T ss_pred eeccCcccccccc-----------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEe
Confidence 9888763222111 01135799999999999999999999999999998888
Q ss_pred eCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 158 RDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 158 ~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+... +|+||.|.+.+.+.+++. .+-..|. +..+.|..+.
T Consensus 131 ~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~----gk~vevkrA~ 174 (311)
T KOG4205|consen 131 YDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN----GKKVEVKRAI 174 (311)
T ss_pred ecccccccccceeeEeccccccceecc-cceeeec----CceeeEeecc
Confidence 87655 699999999999888876 3444454 6666666554
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=3e-20 Score=150.80 Aligned_cols=81 Identities=26% Similarity=0.355 Sum_probs=72.0
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCcc-c--cCceEEEEe
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYN-F--DGCRLRVEL 79 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~-~--~g~~l~v~~ 79 (270)
+.++|||+.|++.+||++|+++|++||.|++|+|..+ +.++|||||.|.+.+.|..||+.|||.. + ...+|.|++
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 3678999999999999999999999999999999774 7889999999999999999999999944 3 356899999
Q ss_pred cCCCCC
Q 024262 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 203 ADtqkd 208 (510)
T KOG0144|consen 203 ADTQKD 208 (510)
T ss_pred cccCCC
Confidence 975543
No 38
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.84 E-value=9.5e-20 Score=134.19 Aligned_cols=80 Identities=34% Similarity=0.532 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+..++|.|.||...++.++|+.+|++||.|.+|+|. .|+.++|||||.|....+|+.|++.|+|.+|+|+.|.|+++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 446789999999999999999999999999999994 46789999999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 765
No 39
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=1.6e-21 Score=162.75 Aligned_cols=172 Identities=22% Similarity=0.300 Sum_probs=140.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.++||+..|+..+++-+|.++|+.+|+|.+|.++.+ +.++|.|||+|.+.+++..||. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 56788999999999999999999999999999999654 6789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
..............+. ..-..+...|||+||..++++++|+.+|+.||.|..|.++.+.
T Consensus 256 Eaeknr~a~~s~a~~~---------------------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 256 EAEKNRAANASPALQG---------------------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS 314 (549)
T ss_pred HHHHHHHHhccccccc---------------------cccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence 6542221111110000 0001122349999999999999999999999999999998886
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 161 ~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+ ||+||+|.+.++|.+|+++|||.++. |+.|+|...
T Consensus 315 ~tG~skgfGfi~f~~~~~ar~a~e~lngfelA----Gr~ikV~~v 355 (549)
T KOG0147|consen 315 ETGRSKGFGFITFVNKEDARKALEQLNGFELA----GRLIKVSVV 355 (549)
T ss_pred ccccccCcceEEEecHHHHHHHHHHhccceec----CceEEEEEe
Confidence 33 69999999999999999999998888 888887554
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.4e-19 Score=137.16 Aligned_cols=193 Identities=21% Similarity=0.271 Sum_probs=141.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccc---cCceEEEEe
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~ 79 (270)
+.++|||+.|.+.-.|||++.+|..||.|.++.+.. ++.++|+|||.|.+.-+|+.||..|+|..- ....|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568999999999999999999999999999999854 688999999999999999999999999443 245788898
Q ss_pred cCCCCCCCC----------------------------------------------------------------------C
Q 024262 80 AHGGSGRGP----------------------------------------------------------------------S 89 (270)
Q Consensus 80 ~~~~~~~~~----------------------------------------------------------------------~ 89 (270)
+....++.- .
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 864332000 0
Q ss_pred C-CCCC----------------------CCCCCCCCCCCC-----------CCCCCCC----------------------
Q 024262 90 S-SDRR----------------------GGYGGGGAGGAG-----------GAGAGAG---------------------- 113 (270)
Q Consensus 90 ~-~~~~----------------------~~~~~~~~~~~~-----------~~~~~~~---------------------- 113 (270)
+ .... .++.+...-..+ -..+...
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0 0000 000000000000 0000000
Q ss_pred CCC-----------------CCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc----EEEEEecCh
Q 024262 114 AGR-----------------FGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNP 172 (270)
Q Consensus 114 ~~~-----------------~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~afv~f~~~ 172 (270)
+.. ....-..++.|||..||....+.+|.++|-.||.|+..++..|..++ |+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000 00111557899999999999999999999999999999998887664 999999999
Q ss_pred hhHHHHHHhcCCccccCccccceeeeecC
Q 024262 173 EDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 173 ~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..|+.||..|||..|+ -++++|...
T Consensus 338 ~SaQaAIqAMNGFQIG----MKRLKVQLK 362 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIG----MKRLKVQLK 362 (371)
T ss_pred hhHHHHHHHhcchhhh----hhhhhhhhc
Confidence 9999999999999999 777877665
No 41
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.83 E-value=3.6e-19 Score=132.72 Aligned_cols=184 Identities=18% Similarity=0.256 Sum_probs=130.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCC----CCcEEEEEEcCHHHHHHHHHhcCCcccc---CceEEE
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPR----PPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRV 77 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~----~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v 77 (270)
.-+||||.+||.++.+-+|+.||..|---+...|+.+++ .+-+|||.|.+.++|..|+..|||+.|+ +..|.|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 368999999999999999999999987677777766543 3589999999999999999999999995 889999
Q ss_pred EecCCCCCCCCCCCCCCC----CCCCCCCC--------------C-CCC----CCCCCC---------------------
Q 024262 78 ELAHGGSGRGPSSSDRRG----GYGGGGAG--------------G-AGG----AGAGAG--------------------- 113 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~----~~~~~~~~--------------~-~~~----~~~~~~--------------------- 113 (270)
++++...+.......... .+.....+ . .+. .+....
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 999876543322211100 00000000 0 000 000000
Q ss_pred -------CCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc
Q 024262 114 -------AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 114 -------~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
............+|||.||...+++++|+++|+.|.....++|-.......||++|++.+.|-.|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0000011122458999999999999999999999987766665444333489999999999999999999988
Q ss_pred cc
Q 024262 187 FR 188 (270)
Q Consensus 187 ~~ 188 (270)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 86
No 42
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.82 E-value=1.7e-19 Score=132.87 Aligned_cols=80 Identities=19% Similarity=0.207 Sum_probs=73.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
+.......|.|.||.+.++.++|..+|++||.|.+|.|+.+..+ |||||.|....+|+.|+++|+|..++ |+
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld----gR 83 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD----GR 83 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec----cc
Confidence 34455689999999999999999999999999999999999765 69999999999999999999999999 99
Q ss_pred eeeeecCC
Q 024262 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|..++
T Consensus 84 elrVq~ar 91 (256)
T KOG4207|consen 84 ELRVQMAR 91 (256)
T ss_pred eeeehhhh
Confidence 99887766
No 43
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=1e-19 Score=139.38 Aligned_cols=139 Identities=27% Similarity=0.413 Sum_probs=115.5
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 ~~~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|.+++-+||||+||...+||+-|..||++.|.|..++|+.+ .|+|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 55688899999999999999999999999999999988743 3444444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
... ..++ .+....-..+||+.|...++.++|++.|..||+|.++++++|.
T Consensus 49 ~~p--~nQs----------------------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 49 TAP--GNQS----------------------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred cCc--ccCC----------------------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 332 0000 0011113579999999999999999999999999999999997
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCCC
Q 024262 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+ ||+||.|.+.++|+.||.+|||..|+ ++.|+...+.+.+
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG----~R~IRTNWATRKp 143 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG----RRTIRTNWATRKP 143 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeec----cceeeccccccCc
Confidence 76 69999999999999999999999999 9999999988766
No 44
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.79 E-value=2.8e-20 Score=149.11 Aligned_cols=181 Identities=17% Similarity=0.165 Sum_probs=120.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
-..|.|.||.+++|.++|+.||..+|+|.++.|+.+ ......|||.|.+.+.+..|.. |.++.|-|+.|.|-+
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEEe
Confidence 448999999999999999999999999999999653 2345689999999999999999 666666666666665
Q ss_pred cCCC-CCCC---CCCCCCCCCCCCCCCCCC-CCCCCC----CC----------CCCCCC--CCCCcceEEEeCCCCCCCH
Q 024262 80 AHGG-SGRG---PSSSDRRGGYGGGGAGGA-GGAGAG----AG----------AGRFGI--SRHSEYRVIVRGLPSSASW 138 (270)
Q Consensus 80 ~~~~-~~~~---~~~~~~~~~~~~~~~~~~-~~~~~~----~~----------~~~~~~--~~~~~~~l~V~nl~~~~~~ 138 (270)
.... .+.. ..............+++- .+.... .. +..+.. ..+...+++|.+|+..+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 5432 1111 011111111111111110 000000 00 000000 0011357999999999999
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024262 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 139 ~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.++.+.|..+|.|....+.......+|.++|........|+. ++|..+.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999999998887776666688899998888888877 5555543
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=3.6e-19 Score=121.18 Aligned_cols=80 Identities=38% Similarity=0.562 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.||||||+||++-++||+|.+||+.||+|..|.| ..+..+.|||||+|...++|..||..++|+.+++++|.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 56999999999999999999999999999999988 345678999999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 765
No 46
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.78 E-value=2.2e-17 Score=134.50 Aligned_cols=184 Identities=28% Similarity=0.446 Sum_probs=133.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhh-cccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.+||+|||+++...+|+.||. +.|+|..|.+..+ ++++|+|.|||.++|.+++|++.||.+.|.|++|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346699999999999999999997 5799999999765 7999999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCC--CCCCC------CCCCCCCCC-CCCCCC------C------------------------CC-----
Q 024262 82 GGSGRGPSSSDRR--GGYGG------GGAGGAGGA-GAGAGA------G------------------------RF----- 117 (270)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~------~~~~~~~~~-~~~~~~------~------------------------~~----- 117 (270)
......-..--+. ..+.+ +......+. +.+... + .+
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 5321111000000 00000 000000000 000000 0 00
Q ss_pred ------CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 118 ------GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 118 ------~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.-..+....+||.||.+.+....|.+.|...|.|..+.+-.++.+ +++.++|..+-+|.+||..+++..+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 001122357999999999999999999999999999888777654 69999999999999999999975544
No 47
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=1.8e-17 Score=128.83 Aligned_cols=87 Identities=32% Similarity=0.528 Sum_probs=80.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
++|-+||||+-|+.+++|..|+..|+.||+|+.|.|+. +++++|||||+|.++.+...|.+..+|++|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 47889999999999999999999999999999999954 689999999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 024262 80 AHGGSGRGPS 89 (270)
Q Consensus 80 ~~~~~~~~~~ 89 (270)
-.......+.
T Consensus 178 ERgRTvkgW~ 187 (335)
T KOG0113|consen 178 ERGRTVKGWL 187 (335)
T ss_pred cccccccccc
Confidence 8877555443
No 48
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.77 E-value=1.3e-17 Score=132.11 Aligned_cols=194 Identities=20% Similarity=0.204 Sum_probs=139.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEE--------EEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCc
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
.-++.|||.|||.++|.+++.++|++||-|.. |+|.. .|..+|-|+|.|-..+++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34677999999999999999999999997744 45533 488899999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCC-CCCCCCCcceEEEeCCCCCC----C-------
Q 024262 74 RLRVELAHGGSGRGPSSSDRRG----GYGGGGAGGAGGAGAGAGAGR-FGISRHSEYRVIVRGLPSSA----S------- 137 (270)
Q Consensus 74 ~l~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~V~nl~~~~----~------- 137 (270)
.|+|+.|+-............. ....... ......+-.+.. .........+|.+.|+-... +
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k--~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKK--QQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHH--HHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999998743221111100000 0000000 000000000000 11223445789999875322 2
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 138 WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+++|.+.+++||.|..|.+....+.|.+.|.|.+.++|..|++.|+|..+. |+.|......+
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd----gRql~A~i~DG 351 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD----GRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeec----ceEEEEEEeCC
Confidence 457888999999999999998888899999999999999999999999999 88888766653
No 49
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=1.9e-17 Score=136.89 Aligned_cols=168 Identities=21% Similarity=0.234 Sum_probs=129.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec-CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...-.|.+.+||++||++||.++|+.| .|.++.+.. ++++.|-|||+|.++|++++|++ .+...+..+.|.|..+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 445678889999999999999999998 588887755 49999999999999999999999 899999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCC-
Q 024262 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDS- 160 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~- 160 (270)
.+......... . ........|.+.+||..++++||.++|+..-.|.. +.++.+.
T Consensus 86 ~e~d~~~~~~g---~---------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r 141 (510)
T KOG4211|consen 86 AEADWVMRPGG---P---------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR 141 (510)
T ss_pred ccccccccCCC---C---------------------CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC
Confidence 53322111000 0 00123468999999999999999999998766655 3344433
Q ss_pred --CCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 161 --EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 161 --~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+|-|||.|++.+.|++|+.. |...|. .+.|.|..+.
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~r-hre~iG----hRYIEvF~Ss 180 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALGR-HRENIG----HRYIEVFRSS 180 (510)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHhhc----cceEEeehhH
Confidence 447999999999999999984 555565 6777765543
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=6.3e-18 Score=108.80 Aligned_cols=68 Identities=40% Similarity=0.764 Sum_probs=64.0
Q ss_pred EEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEE
Q 024262 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|||+|||.++|+++|+++|++||.|..+.+.. ++..+++|||+|.+.++|++|++.|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 467799999999999999999999999999999885
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.74 E-value=1.5e-17 Score=129.55 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++|||+|||+.+++++|+++|+.||+|.+|.|..++..+|||||+|.++++|..||. |||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 6899999999999999999999999999999998877778999999999999999997 9999999999999998765
No 52
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=5.8e-17 Score=139.41 Aligned_cols=190 Identities=22% Similarity=0.293 Sum_probs=138.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
..+.|+|+|||..+..++|..+|..||.|..+.|... -..|+|+|.++.+|.+|+..|....+...+|.+.++....
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 4578999999999999999999999999999955422 2359999999999999999999999999999998886432
Q ss_pred CCCCCCCCC--CCCCCC-------------CCCCCCCCCCCCCCCCCCCCCC-CCcceEEEeCCCCCCCHHHHHHHHHhc
Q 024262 85 GRGPSSSDR--RGGYGG-------------GGAGGAGGAGAGAGAGRFGISR-HSEYRVIVRGLPSSASWQDLKDHMRKA 148 (270)
Q Consensus 85 ~~~~~~~~~--~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~V~nl~~~~~~~~l~~~f~~~ 148 (270)
-........ ...... +.......... .......... ...+.|||.||+...+.++|..+|..+
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te-~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTE-ESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccc-cccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 221100000 000000 00000000000 0000000111 122339999999999999999999999
Q ss_pred CCeeEEEEeeCCCC-------cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 149 GDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 149 g~v~~~~~~~~~~~-------~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|.|..+.|....+. |||||+|.++++|+.|+..|+|+.++ |..|.+..+.
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld----GH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD----GHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec----CceEEEEecc
Confidence 99999988766654 89999999999999999999999999 9999998887
No 53
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.73 E-value=3e-17 Score=107.64 Aligned_cols=80 Identities=34% Similarity=0.445 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.++-|||.|||+.+|.|++.+||..||.|..|.|-.+...+|.|||-|++..+|.+|+..|+|..+.++.|.|-+..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 56789999999999999999999999999999999777777999999999999999999999999999999999998764
No 54
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=4.2e-17 Score=142.56 Aligned_cols=136 Identities=21% Similarity=0.313 Sum_probs=100.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++|||+|||..+++++|+++|+.| |+|..|.+. ++||||+|.+.++|.+|++.||+..|.|+.|.|.++.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 57999999999999999999999999999999999976
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCee
Q 024262 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~ 152 (270)
....... .+..+ .++.+...................++++.|++...+++.+.++|..+|.|.
T Consensus 307 ~~~~~~~------~~~rg-~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYV------RYTRG-TGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCccccc------ccccc-cCCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 5322110 00000 000000000000001112233467999999999999999999999998764
No 55
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=1.6e-16 Score=132.16 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccC--ceEEEEe
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
..++|||+|||..+|+++|+++|++||+|..+.|+. ++.+++||||+|.+.++|++||+.||++.|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 56788999999999999999999999998865 7899999
Q ss_pred cCCCC
Q 024262 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 88653
No 56
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.71 E-value=1.2e-16 Score=122.53 Aligned_cols=81 Identities=23% Similarity=0.236 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
....+|||+||++.+|+++|+++|+.||+|.+|.|..++...+||||+|.++++|..|+. |||..|.|++|.|......
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 456899999999999999999999999999999999888888999999999999999997 9999999999999998765
Q ss_pred CC
Q 024262 84 SG 85 (270)
Q Consensus 84 ~~ 85 (270)
..
T Consensus 82 ~~ 83 (243)
T PLN03121 82 ED 83 (243)
T ss_pred cc
Confidence 43
No 57
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=5.2e-18 Score=122.63 Aligned_cols=83 Identities=27% Similarity=0.452 Sum_probs=77.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++..|||+|||+..||.||.-.|++||+|.+|.++ .||+++||||+.|+++.+...||..|||+.|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 468899999999999999999999999999999995 46899999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 024262 81 HGGSGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 877443
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2e-16 Score=119.75 Aligned_cols=80 Identities=36% Similarity=0.540 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++++|.|.||+.++++++|.+||..||.|..|+| +.||.++|||||.|...++|.+||..|||+=++.-.|.|+++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 67899999999999999999999999999999999 457899999999999999999999999999999999999999
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 864
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.68 E-value=2.3e-16 Score=101.44 Aligned_cols=68 Identities=29% Similarity=0.605 Sum_probs=61.1
Q ss_pred EEEcCCCCCcCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEE
Q 024262 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999654 56789999999999999999999999999999874
No 60
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=7.7e-16 Score=130.50 Aligned_cols=183 Identities=19% Similarity=0.291 Sum_probs=132.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..-+.|||++||..++++++.++...||.+..+.+.. ++.++||||.+|.++.....|+..|||+.++++.|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3457899999999999999999999999999988854 4688999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCC--CCCC--------HHHHHHHHHhcC
Q 024262 81 HGGSGRGPSSSDR-RGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLP--SSAS--------WQDLKDHMRKAG 149 (270)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~--~~~~--------~~~l~~~f~~~g 149 (270)
-........+... .....+. ..-+.+....++..|.+.|+= ..+. -++++..|.+||
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i------------~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g 434 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGI------------PLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFG 434 (500)
T ss_pred hccchhccccCCccccccccc------------hhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccC
Confidence 7553322222110 0000000 000011122233344444421 1111 135788889999
Q ss_pred CeeEEEEeeC-CC------CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 150 DVCFAEVSRD-SE------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 150 ~v~~~~~~~~-~~------~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.|..|.+..+ .. .|..||+|.+.++++.|++.|+|.++. ++.+...++.
T Consensus 435 ~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~----nRtVvtsYyd 490 (500)
T KOG0120|consen 435 AVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA----NRTVVASYYD 490 (500)
T ss_pred ceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC----CcEEEEEecC
Confidence 9999999887 22 268999999999999999999999999 7777665553
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.1e-14 Score=106.35 Aligned_cols=83 Identities=25% Similarity=0.369 Sum_probs=73.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|++||.|..+.++.+.. .+||||+|.+.++|+.|++.|++..|. ++
T Consensus 29 ~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~----Gr 104 (144)
T PLN03134 29 SLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN----GR 104 (144)
T ss_pred cccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3345567999999999999999999999999999999988764 369999999999999999999999998 99
Q ss_pred eeeeecCCCCC
Q 024262 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|+|+.+...+
T Consensus 105 ~l~V~~a~~~~ 115 (144)
T PLN03134 105 HIRVNPANDRP 115 (144)
T ss_pred EEEEEeCCcCC
Confidence 99999886543
No 62
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.64 E-value=3.8e-14 Score=113.63 Aligned_cols=189 Identities=14% Similarity=0.098 Sum_probs=137.6
Q ss_pred CCCCeEEEcCCCCC-cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
-+.+.++|.+|... ++.+.|..||..||.|..|+++++. .|.|.||+.++.+++.||..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 56899999999776 8889999999999999999998775 68999999999999999999999999999999999875
Q ss_pred CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEee
Q 024262 83 GSGRGPSSSD---RRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSR 158 (270)
Q Consensus 83 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~ 158 (270)
.-......-. ....+... .+........+..........+.+.|+.-|.|..+||+.|.++|...+. ...+++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdy-s~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDY-SGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred cccccCCceecCCCCcchhhc-ccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 4222111100 00011110 0111111111111122334456789999999999999999999988774 44566665
Q ss_pred CCCC--cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 159 DSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 159 ~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.+.. -.+.+||++.++|.+|+..+|...+.+....-.
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~P 480 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFP 480 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCCCCC
Confidence 5433 378999999999999999999999985443333
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.63 E-value=8e-15 Score=120.14 Aligned_cols=145 Identities=28% Similarity=0.458 Sum_probs=109.8
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++|||+|||..+++++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..+++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999998854 478999999999999999999999999999999999999764
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024262 83 -GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
............... .................+++.+++..++..++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASF------------AKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhh------------hccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 111111100000000 0000111122334567899999999999999999999999997776665544
Q ss_pred C
Q 024262 162 G 162 (270)
Q Consensus 162 ~ 162 (270)
.
T Consensus 263 ~ 263 (306)
T COG0724 263 G 263 (306)
T ss_pred C
Confidence 3
No 64
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=4.9e-14 Score=112.81 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=71.0
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..|||..+.++.+++||+..|+.||+|..|.+.. .+..+||+||+|.+.++-..|+..||-+.++|+.|+|..+...
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 5799999999999999999999999999999954 3577999999999999999999999999999999999887644
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.62 E-value=2.1e-15 Score=125.01 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCH--HHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA--RDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~--~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
....+||||||++.+++++|..+|..||.|..|.|+.... +|||||+|... .++.+||..|||..|.|+.|+|..++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 4567999999999999999999999999999999975433 99999999987 78999999999999999999999997
Q ss_pred C
Q 024262 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 66
>smart00362 RRM_2 RNA recognition motif.
Probab=99.62 E-value=4.5e-15 Score=95.54 Aligned_cols=71 Identities=41% Similarity=0.739 Sum_probs=65.5
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+|+|+|||..+++++|.++|..||+|..+.+..+ +.++++|||+|.+.++|+.|+..+++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999988654 5678999999999999999999999999999998873
No 67
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.62 E-value=3.6e-14 Score=115.00 Aligned_cols=189 Identities=17% Similarity=0.225 Sum_probs=132.5
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc--cCceEEEEecCCCCC
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVELAHGGSG 85 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~~~~~~~ 85 (270)
.++|.|+-..++-|-|.++|+.||.|..|.-. ++...=.|+|+|.+++.|+.|...|+|..| +.+.|+|.+++-...
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF-~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITF-TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEE-ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 56889999999999999999999999887542 222233599999999999999999999887 467888888764321
Q ss_pred CCCCCC--CCCCCCCCCCCC---------------CC---CCCC----CC----CCC-CCCCCCCCCcceEEEeCCC-CC
Q 024262 86 RGPSSS--DRRGGYGGGGAG---------------GA---GGAG----AG----AGA-GRFGISRHSEYRVIVRGLP-SS 135 (270)
Q Consensus 86 ~~~~~~--~~~~~~~~~~~~---------------~~---~~~~----~~----~~~-~~~~~~~~~~~~l~V~nl~-~~ 135 (270)
-..-.. .+...-...+.| +- ++.. .+ ... +.-..+. ....|.|.||. +.
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~-~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS-ANVVLLVSNLNEEA 309 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCC-CceEEEEecCchhc
Confidence 110000 000000000000 00 0000 00 000 0001111 25677787775 78
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+|.+.|..+|.-||.|..|+|+.++.. .|+|+|.+...|+-|++.|+|..+. |+.|+|..++.
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkkd-~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrvt~SKH 372 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKKD-NALIQMSDGQQAQLAMEHLEGHKLY----GKKLRVTLSKH 372 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCCc-ceeeeecchhHHHHHHHHhhcceec----CceEEEeeccC
Confidence 899999999999999999999988763 8999999999999999999999988 89999988874
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=2e-15 Score=118.97 Aligned_cols=80 Identities=26% Similarity=0.470 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+--+.|+|.|||+..-+-||+.+|.+||+|.+|.|+.+ ..+|||+||+|++++||++|-..|||..|.|++|.|.-+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 44578999999999999999999999999999999664 57899999999999999999999999999999999998865
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
+
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 4
No 69
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.5e-15 Score=104.55 Aligned_cols=79 Identities=25% Similarity=0.418 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.-.|||+++...+++++|.+.|..||+|++|.+.. +|-.+|||+|+|++.++|++|+..|||..|.|++|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 345799999999999999999999999999999954 67889999999999999999999999999999999999997
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 65
No 70
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.60 E-value=2.9e-13 Score=108.69 Aligned_cols=193 Identities=17% Similarity=0.201 Sum_probs=138.0
Q ss_pred CCCCCeEEEcCCCCC--cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc--cCceEEEE
Q 024262 3 GRFSRTIYVGNLPSD--IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~ 78 (270)
..+++.|.++=|.+. +|.+-|.++...+|+|..|.|... .--.|+|||++.+.|++|.+.|||..| +.+.|+|+
T Consensus 117 ~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIe 194 (494)
T KOG1456|consen 117 ATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIE 194 (494)
T ss_pred CCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEE
Confidence 356777877766554 999999999999999999988432 134799999999999999999999887 67899999
Q ss_pred ecCCCCCCC-----CCCCCC-----------CC----------------CCCCCCCCCCCC---CCCCCCCC--------
Q 024262 79 LAHGGSGRG-----PSSSDR-----------RG----------------GYGGGGAGGAGG---AGAGAGAG-------- 115 (270)
Q Consensus 79 ~~~~~~~~~-----~~~~~~-----------~~----------------~~~~~~~~~~~~---~~~~~~~~-------- 115 (270)
|+++....- ..|.-. .+ .+.++.++-..+ +....-+.
T Consensus 195 yAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~ 274 (494)
T KOG1456|consen 195 YAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRD 274 (494)
T ss_pred ecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCcccccc
Confidence 998653211 111000 00 000000000000 00000000
Q ss_pred ----CCCCCCCCcceEEEeCCC-CCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCc
Q 024262 116 ----RFGISRHSEYRVIVRGLP-SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 116 ----~~~~~~~~~~~l~V~nl~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
.......+++.+.|.+|. ..++-+.|..+|..||.|..|++++.+.+ .|.|++.+..+.+.|+..||+..+.
T Consensus 275 ~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~hLnn~~lf-- 351 (494)
T KOG1456|consen 275 GRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVTHLNNIPLF-- 351 (494)
T ss_pred CCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHHHhccCccc--
Confidence 001223456789999997 46778889999999999999999998764 9999999999999999999999987
Q ss_pred cccceeeeecCC
Q 024262 191 WARGRITVKRYD 202 (270)
Q Consensus 191 ~~~~~i~v~~~~ 202 (270)
|.+|.+..++
T Consensus 352 --G~kl~v~~Sk 361 (494)
T KOG1456|consen 352 --GGKLNVCVSK 361 (494)
T ss_pred --cceEEEeecc
Confidence 8899888775
No 71
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.58 E-value=4.2e-15 Score=112.28 Aligned_cols=75 Identities=25% Similarity=0.391 Sum_probs=68.1
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++|||+||+..+..|.|+++|++||+|++..++ .+++++||+||+|.+.++|.+|++. .+-.|+|++..|..+.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 689999999999999999999999999998884 4689999999999999999999994 44778999999988764
No 72
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=9.5e-14 Score=108.30 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=70.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+=++|||.-|++.+++..|+..|+.||+|..|.|+.+..+ |||||+|+...+...|.++.+|.+|+ ++.|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id----grri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID----GRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec----CcEEE
Confidence 34489999999999999999999999999999999988544 69999999999999999999999999 88888
Q ss_pred eecCC
Q 024262 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|+...
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 87765
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.56 E-value=3.5e-13 Score=110.28 Aligned_cols=74 Identities=28% Similarity=0.561 Sum_probs=65.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...++|+|.|||.+.|++.|++-|..||.|.+++|+.+... .+.|.|.++++|+.|...|+|..+. ++.|.|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks-kGVVrF~s~edAEra~a~Mngs~l~----Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS-KGVVRFFSPEDAERACALMNGSRLD----GRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc-cceEEecCHHHHHHHHHHhccCccc----Cceeeeee
Confidence 44578999999999999999999999999999998655432 5689999999999999999999999 99998875
No 74
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=5.3e-14 Score=85.97 Aligned_cols=56 Identities=34% Similarity=0.584 Sum_probs=51.1
Q ss_pred HHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 23 VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 23 l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|.++|++||+|..+.+..+. .++|||+|.+.++|..|+..|||..|.|++|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997654 599999999999999999999999999999999985
No 75
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=1e-13 Score=89.58 Aligned_cols=72 Identities=38% Similarity=0.741 Sum_probs=66.1
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCC--CCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+|+|+|||..+++++|.++|..||.|..+.+..+. .+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996543 5689999999999999999999999999999999864
No 76
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=5.6e-14 Score=90.03 Aligned_cols=68 Identities=41% Similarity=0.732 Sum_probs=62.4
Q ss_pred EcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 11 VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 11 V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
|+|||..+++++|+++|..||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999998855 35678999999999999999999999999999999873
No 77
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-14 Score=115.79 Aligned_cols=81 Identities=25% Similarity=0.392 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
-|.+.|||..|.+.++++||.-||+.||+|..+.++. +|.+..||||+|.+.++|.+|.-.|+++.|+++.|.|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4678999999999999999999999999999999954 6888999999999999999999999999999999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
++-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 8753
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=6.3e-14 Score=89.92 Aligned_cols=66 Identities=24% Similarity=0.460 Sum_probs=59.9
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 127 l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
|||+|||..+++++|.++|+.||.|..+.+..+.. .++|||+|.+.++|..|++.|+|..+. +..|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~----~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN----GRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC----ccCc
Confidence 79999999999999999999999999999988622 269999999999999999999999988 6665
No 79
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1e-13 Score=109.49 Aligned_cols=78 Identities=26% Similarity=0.338 Sum_probs=72.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.....+|+|.|||....+.||+.+|++||+|.+|+|+.+..+ ||+||+|++++||++|.++|||..+. |++|.|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE----GRkIEV 168 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE----GRKIEV 168 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee----ceEEEE
Confidence 345679999999999999999999999999999999988765 79999999999999999999999999 999999
Q ss_pred ecCC
Q 024262 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 169 n~AT 172 (376)
T KOG0125|consen 169 NNAT 172 (376)
T ss_pred eccc
Confidence 8765
No 80
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=3.7e-14 Score=105.88 Aligned_cols=82 Identities=33% Similarity=0.517 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||++|...+++.-|...|-.||.|.+|.+.. +.+.+|||||+|...|+|..||..||+..|.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 3568999999999999999999999999999999955 4788999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024262 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.+...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 87643
No 81
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.49 E-value=4.2e-14 Score=113.76 Aligned_cols=189 Identities=19% Similarity=0.197 Sum_probs=127.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcc----cceEEEEE-ec-CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKY----GRILDIEL-KI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~-~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+--.|.+.+||+++++.|+.++|..- |.++.|-+ .. +|++.|-|||.|..+++|+.||. -|...|+-+.|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 34467788999999999999999732 23344433 34 78999999999999999999998 56666776766665
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC-eeE--EE
Q 024262 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCF--AE 155 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~-v~~--~~ 155 (270)
.+...+...--....... ...+. .....+..+...........+|.+.+||+..+.++|-++|..|.. |.. |+
T Consensus 239 RSTaaEvqqvlnr~~s~p---Li~~~-~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVH 314 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEP---LIPGL-TSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVH 314 (508)
T ss_pred HHhHHHHHHHHHhhcccc---ccCCC-CCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeE
Confidence 442111000000000000 00000 001111123334444555789999999999999999999999874 333 67
Q ss_pred EeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 156 VSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 156 ~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+..+..+ |-|||+|.+.++|..|..+.+++... .++|.|-...
T Consensus 315 mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk----~RYiEvfp~S 360 (508)
T KOG1365|consen 315 MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMK----SRYIEVFPCS 360 (508)
T ss_pred EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc----cceEEEeecc
Confidence 7666544 79999999999999999998888776 7888775543
No 82
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=1.3e-13 Score=116.48 Aligned_cols=79 Identities=32% Similarity=0.579 Sum_probs=74.7
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.|||+|||+++++++|..+|+..|.|..++++. +|.++||||++|.++++|..|+..|||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999965 5899999999999999999999999999999999999999866
Q ss_pred CC
Q 024262 84 SG 85 (270)
Q Consensus 84 ~~ 85 (270)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 83
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.1e-13 Score=97.75 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=71.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..+.|||+|||.++.+.+|+++|-+||.|..|++..... ..||||+|+++.+|+.||..-+|..++ +..++|++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd----g~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD----GCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC----cceEEEEec
Confidence 347999999999999999999999999999998865543 359999999999999999999999998 999999999
Q ss_pred CCCC
Q 024262 202 DRSP 205 (270)
Q Consensus 202 ~~~~ 205 (270)
+..+
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8544
No 84
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.45 E-value=1.3e-13 Score=107.28 Aligned_cols=93 Identities=33% Similarity=0.588 Sum_probs=80.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..+++|+|+||.+.++.++|++.|.+||+|+++.|. ++|+||.|...++|..|+..||+..|.|++|+|+.+...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 578999999999999999999999999999999998 579999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 024262 84 SGRGPSSSDRRGGYGGGG 101 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (270)
-.-++...+..+.+..+.
T Consensus 151 lrtapgmgDq~~cyrcGk 168 (346)
T KOG0109|consen 151 LRTAPGMGDQSGCYRCGK 168 (346)
T ss_pred cccCCCCCCHHHheeccc
Confidence 555554444445554443
No 85
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.45 E-value=5.1e-13 Score=104.44 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=68.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+|||+|||+.+++++|+++|+.||.|..|.|+.+.. .+||||+|.+.++|..|+. |+|..|. ++.|.|....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~----gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV----DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC----CceEEEEecc
Confidence 36999999999999999999999999999999988863 4799999999999999995 9999998 9999998875
No 86
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.9e-13 Score=112.09 Aligned_cols=77 Identities=27% Similarity=0.502 Sum_probs=70.9
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSG 85 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~ 85 (270)
-+.|||.||+.++|+|.|.++|++||.|..|+.. +.||||.|.+-++|.+|++.+||..|.|..|.|.++++..+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 3579999999999999999999999999999877 45999999999999999999999999999999999998654
Q ss_pred CC
Q 024262 86 RG 87 (270)
Q Consensus 86 ~~ 87 (270)
..
T Consensus 334 ~k 335 (506)
T KOG0117|consen 334 KK 335 (506)
T ss_pred hc
Confidence 43
No 87
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.44 E-value=5.7e-13 Score=91.96 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...++.|||+++...+++++|.+.|..||+|..+++..+..+ |||+|+|++.++|+.|+..+||..+. +..|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll----~q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL----GQNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh----CCce
Confidence 355789999999999999999999999999999999888776 59999999999999999999999999 8999
Q ss_pred eeecCC
Q 024262 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|++.=
T Consensus 145 ~VDw~F 150 (170)
T KOG0130|consen 145 SVDWCF 150 (170)
T ss_pred eEEEEE
Confidence 888764
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=3.5e-12 Score=83.98 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+.+.+..|||.|||..+|.+++-++|.+||+|..+.+-..+.+ |.|||.|++..+|.+|.++|.|..+. ++.+.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~----~ryl~ 88 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD----NRYLV 88 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC----CceEE
Confidence 45566789999999999999999999999999999999877665 79999999999999999999999998 88887
Q ss_pred eecCC
Q 024262 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|-...
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 76654
No 89
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.38 E-value=2.2e-12 Score=82.71 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=58.6
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 127 l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
|+|+|||..+++++|.++|+.+|.|..+.+..+.. .++|||+|.+.++|..|++.+++..+. |+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~----g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID----GRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC----CEEc
Confidence 79999999999999999999999999999998865 369999999999999999999999888 6665
No 90
>smart00361 RRM_1 RNA recognition motif.
Probab=99.38 E-value=2.3e-12 Score=82.38 Aligned_cols=58 Identities=26% Similarity=0.438 Sum_probs=51.5
Q ss_pred HHHHHHHhh----cccceEEEE-Eec---C--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEE
Q 024262 20 EYEVEDLFY----KYGRILDIE-LKI---P--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 20 ~~~l~~~F~----~~G~v~~~~-~~~---~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+++|+++|. .||.|..|. +.. + +.++|||||+|.+.++|.+|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578999998 999999985 422 3 678999999999999999999999999999999986
No 91
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=4.9e-13 Score=99.92 Aligned_cols=140 Identities=20% Similarity=0.311 Sum_probs=112.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+..+||||+|+-..++++.|.+||-+.|+|..|.|.. +++.+ ||||+|.++-++..|+..+||..+.+..|.|++--
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 5678999999999999999999999999999999954 45666 99999999999999999999999999999988643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024262 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.... .-|...++++.+...|+..|++..+.+..+.+
T Consensus 86 G~sh--------------------------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 86 GNSH--------------------------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDND 121 (267)
T ss_pred CCCc--------------------------------------------chhhhhcchhhheeeecccCCCCCcccccccc
Confidence 2200 01445677788888888999988888776655
Q ss_pred C---cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 162 G---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 ~---~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
+ .+.|+.+--.-....++..+.+....
T Consensus 122 ~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 122 GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 3 47888877766777777777776554
No 92
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=3.3e-12 Score=108.74 Aligned_cols=178 Identities=22% Similarity=0.355 Sum_probs=134.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcc-----------c-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccc
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----------G-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~-----------G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.....++|+++|+.++++.+..+|..- | .|..+.+... +.||||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~---~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE---KNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc---ccceeEEecCCCchhhhhc-ccchhhC
Confidence 567889999999999999999999853 2 3555655433 7899999999999999999 9999999
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCe
Q 024262 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (270)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v 151 (270)
|.++++.-.............-.. -+.-...............++|++||..+++.++.++...||++
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~------------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQ------------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred CCCceecccccccCCccchhhhcc------------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 999998766554222111100000 00000001112233456799999999999999999999999999
Q ss_pred eEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 152 CFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 152 ~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
....+..+... +|||.+|.++.....|+..|||+.++ +..+.|..+
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvvq~A 366 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVVQRA 366 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc----CceeEeehh
Confidence 98888777663 69999999999999999999999998 777766554
No 93
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.5e-11 Score=93.64 Aligned_cols=79 Identities=23% Similarity=0.314 Sum_probs=72.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.....++|.|.||+.++++++|+++|..||.|..+++..++.+ |||||.|.+.++|++||..|||.-++ .-.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd----~LI 260 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD----NLI 260 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc----eEE
Confidence 4456789999999999999999999999999999999999877 59999999999999999999998887 778
Q ss_pred eeeecCC
Q 024262 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
++|++++
T Consensus 261 LrvEwsk 267 (270)
T KOG0122|consen 261 LRVEWSK 267 (270)
T ss_pred EEEEecC
Confidence 8888775
No 94
>PLN03213 repressor of silencing 3; Provisional
Probab=99.36 E-value=4.3e-12 Score=105.63 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecCh--hhHHHHHHhcCCccccCccccceeeeec
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNP--EDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~--~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+.+|||+||++.+++++|..+|..||.|..|+|++....|||||+|... .++.+|+..|||..+. |+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK----GR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK----GGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec----CceeEEee
Confidence 45799999999999999999999999999999999776678999999988 6899999999998877 99999998
Q ss_pred CC
Q 024262 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
++
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 86
No 95
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=5.5e-12 Score=97.13 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=68.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+.+|+|+||++.+|+++|+++|+.||+|.+|+|+.+... ++|||+|+++++|+.|+ .|+|..|. +..|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~----d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV----DQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC----CceEEEEeC
Confidence 3489999999999999999999999999999999988654 59999999999999999 59999998 888888776
Q ss_pred C
Q 024262 202 D 202 (270)
Q Consensus 202 ~ 202 (270)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 96
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=2.9e-12 Score=87.70 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=70.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...++|||+||...+++++|-++|+++|+|..|-+-.+..+ |||||+|.+.++|..|+.-++|..++ .+.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd----dr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD----DRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc----cccee
Confidence 34689999999999999999999999999998877666554 79999999999999999999999999 99999
Q ss_pred eecCCC
Q 024262 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
++++-+
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 988763
No 97
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=1.6e-12 Score=99.98 Aligned_cols=81 Identities=25% Similarity=0.554 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+-+.|.|||..||.+..+.+|.+.|-.||.|+..++.. |+.++.|+||.|.|+.+|+.||..|||+.|+-++|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 35789999999999999999999999999999988843 578899999999999999999999999999999999998
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
..++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 8766
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=6e-11 Score=99.57 Aligned_cols=165 Identities=22% Similarity=0.347 Sum_probs=113.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEe--cC----CCCCc---EEEEEEcCHHHHHHHHHhcCCccccCce
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--IP----PRPPC---YCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~--~~----~~~~g---~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.-++.|||++||.+++|++|...|..||.+. |.+. .. -.++| |+|+.|+++.+++..|..+.- ....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 4578999999999999999999999999754 3332 11 13356 999999999999988776543 3333
Q ss_pred EEEEecCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHH-hcC
Q 024262 75 LRVELAHGGSGRG----PSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMR-KAG 149 (270)
Q Consensus 75 l~v~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~-~~g 149 (270)
+.++.+..+.... -.|......+- .....+-++..+|||++||..++.++|..+|+ .||
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~fv----------------~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG 396 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDFV----------------LDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG 396 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchhh----------------hccCcccCccceEEecCCCCcchHHHHHHHHHHhcC
Confidence 3333333221111 01100000000 01123345668999999999999999999998 799
Q ss_pred CeeEEEEeeCCC----CcEEEEEecChhhHHHHHHh----cCCcccc
Q 024262 150 DVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRK----LDDTEFR 188 (270)
Q Consensus 150 ~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~----l~g~~~~ 188 (270)
.|..+-|..|+. .|-+-|+|.+...-.+||.+ |+..+|.
T Consensus 397 gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~ 443 (520)
T KOG0129|consen 397 GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID 443 (520)
T ss_pred ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc
Confidence 999999888843 36899999999988888874 4555554
No 99
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.32 E-value=5.2e-12 Score=110.22 Aligned_cols=77 Identities=27% Similarity=0.503 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
-.|+||||++|+.++++.||..+|+.||+|..|.++.. +++|||.+.+-++|.+|+..|++..+.++.|+|.|+..+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 46899999999999999999999999999999999755 899999999999999999999999999999999999876
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.30 E-value=2.3e-11 Score=77.94 Aligned_cols=69 Identities=25% Similarity=0.442 Sum_probs=61.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC--CCcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+|+|.|||..+++++|+++|..||+|..+.+..+. ..++|||+|.+.++|..|+..+++..+. +..+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~----~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG----GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC----CEEEee
Confidence 48999999999999999999999999999888765 3369999999999999999999998887 777665
No 101
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.28 E-value=3.6e-12 Score=112.89 Aligned_cols=158 Identities=21% Similarity=0.365 Sum_probs=132.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.+||++||+..+++.+|+..|..+|.|..|.|..+ +....||||.|.+.+.+-.|+..+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46889999999999999999999999999999999554 4446799999999999999999999888865555555543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024262 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.. ...+..++|++|+..+....|...|..||+|..|.+-...
T Consensus 450 ~k-------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq- 491 (975)
T KOG0112|consen 450 PK-------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ- 491 (975)
T ss_pred cc-------------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC-
Confidence 21 2234789999999999999999999999999988776654
Q ss_pred CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 162 ~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
-||+|.|++...|+.|+..|.|..+++. .+.+.|.++.
T Consensus 492 -~yayi~yes~~~aq~a~~~~rgap~G~P--~~r~rvdla~ 529 (975)
T KOG0112|consen 492 -PYAYIQYESPPAAQAATHDMRGAPLGGP--PRRLRVDLAS 529 (975)
T ss_pred -cceeeecccCccchhhHHHHhcCcCCCC--Cccccccccc
Confidence 3999999999999999999999999854 4447777665
No 102
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.24 E-value=3e-10 Score=88.68 Aligned_cols=79 Identities=25% Similarity=0.469 Sum_probs=72.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+++|+|.|||..++++||++||..||.+..+.+.. .|.+.|.|=|.|...++|..|++.||++.++|++|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 47899999999999999999999999888887755 5788999999999999999999999999999999999887655
Q ss_pred C
Q 024262 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 103
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.5e-11 Score=97.04 Aligned_cols=80 Identities=24% Similarity=0.292 Sum_probs=73.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc----EEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~----~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
...++.+.|||..|.+-+++++|.-+|+.||+|..|.++.+..+| ||||+|++.+++++|.-+|++..|+ .+
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID----Dr 309 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID----DR 309 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec----cc
Confidence 345678899999999999999999999999999999999998886 9999999999999999999999998 88
Q ss_pred eeeeecCC
Q 024262 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
+|.|+++.
T Consensus 310 RIHVDFSQ 317 (479)
T KOG0415|consen 310 RIHVDFSQ 317 (479)
T ss_pred eEEeehhh
Confidence 88877654
No 104
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.23 E-value=9.6e-11 Score=98.68 Aligned_cols=78 Identities=35% Similarity=0.594 Sum_probs=67.7
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE--ec-CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~--~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+|||.|||+++++++|.++|..||+|+...| +. .++...||||+|.+.++++.||. .+.+.|++++|.|+....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 456999999999999999999999999999877 22 23444999999999999999999 679999999999998776
Q ss_pred CC
Q 024262 83 GS 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 43
No 105
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=5.6e-11 Score=88.43 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcc-cceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.....++|..||.-+.+.+|..+|.+| |.|..+.+ +.||+++|||||+|++++.|.-|-+.||+..|.++.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 345678999999999999999999988 78888888 56899999999999999999999999999999999999998
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 7654
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.20 E-value=1.3e-10 Score=74.08 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=59.0
Q ss_pred EeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 129 V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
|.|||..+++++|+++|..||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+. +..+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~----~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD----GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC----CcEEEe
Confidence 578999999999999999999999999888765 469999999999999999999998887 676655
No 107
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.19 E-value=3.7e-11 Score=87.53 Aligned_cols=78 Identities=24% Similarity=0.357 Sum_probs=70.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.....+|||+||+..++++.|.++|-+.|+|+.++++++.- .||||++|.+.++|+-|++-||...+- |+.|
T Consensus 6 rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY----grpI 81 (203)
T KOG0131|consen 6 RNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY----GRPI 81 (203)
T ss_pred cCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc----Ccee
Confidence 34558999999999999999999999999999999988753 479999999999999999999988888 9999
Q ss_pred eeecCC
Q 024262 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
+|..+.
T Consensus 82 rv~kas 87 (203)
T KOG0131|consen 82 RVNKAS 87 (203)
T ss_pred EEEecc
Confidence 988776
No 108
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=2.4e-10 Score=73.55 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=63.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
+|+|.|||..+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|+..+++..+. +..+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~----~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG----GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEe
Confidence 489999999999999999999999999999988764 479999999999999999999999877 7777664
No 109
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.18 E-value=5.7e-10 Score=93.20 Aligned_cols=182 Identities=25% Similarity=0.343 Sum_probs=115.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEE-EEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.....|.+.+||+.||++||.++|+-.-.|.. |.+.. -+.+.|-|||+|++++.|++||. -|...|+-+.|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 35578999999999999999999997754444 33333 35688999999999999999999 7778889999999877
Q ss_pred CCCCC---------CC--CCCCCC----CC--CCCCCCCCCC--------CC-----------------CCCCC------
Q 024262 81 HGGSG---------RG--PSSSDR----RG--GYGGGGAGGA--------GG-----------------AGAGA------ 112 (270)
Q Consensus 81 ~~~~~---------~~--~~~~~~----~~--~~~~~~~~~~--------~~-----------------~~~~~------ 112 (270)
.-... .. +.+... .. .+......+. +. +....
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 31100 00 000000 00 0000000000 00 00000
Q ss_pred ----CCC------CCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHH
Q 024262 113 ----GAG------RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAI 179 (270)
Q Consensus 113 ----~~~------~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~ 179 (270)
++. ....-...+..++..+||+..++.+|..+|+..-++ .|+|..... +|-|+|+|.+.++|..|+
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhh
Confidence 000 000001123678889999999999999999887655 455554443 378999999999999998
Q ss_pred HhcCCcccc
Q 024262 180 RKLDDTEFR 188 (270)
Q Consensus 180 ~~l~g~~~~ 188 (270)
.+ ++..+.
T Consensus 339 sk-d~anm~ 346 (510)
T KOG4211|consen 339 GK-DGANMG 346 (510)
T ss_pred cc-CCcccC
Confidence 74 444444
No 110
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=4.4e-12 Score=92.19 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=69.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.-|||+|||+.+|+.||--+|++||+|++|.++++..+ ||||+.|++.....-|+..|||..|. |+.|+|+.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~----gRtirVDH 111 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL----GRTIRVDH 111 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec----ceeEEeee
Confidence 57999999999999999999999999999999999877 59999999999999999999999999 99999877
Q ss_pred CC
Q 024262 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 54
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.15 E-value=1.4e-10 Score=70.65 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=49.7
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 141 LKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 141 l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
|.++|++||+|..+.+..+. .++|||+|.+.++|..|+..|||..+. |+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 67899999999999998876 579999999999999999999999998 889988753
No 112
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=4.9e-10 Score=89.65 Aligned_cols=76 Identities=28% Similarity=0.524 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHH-HhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI-RGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~~l~~~~~~g~~l~v~~~~~ 82 (270)
...++|||+||-..+++.+|+..|.+||+|..|.+... +++|||+|.+-++|+.|. +.+|...|+|.+|+|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45689999999999999999999999999999998654 679999999999999975 55677888999999999887
No 113
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.6e-10 Score=97.79 Aligned_cols=166 Identities=19% Similarity=0.130 Sum_probs=102.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
-++.+|+|-|||..|++++|.++|+.||+|..|.. +....+.+||+|.+..+|+.|++.|++..|.|+.|+.......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 46789999999999999999999999999999654 4445899999999999999999999999999999981111111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc
Q 024262 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~ 163 (270)
....+. +..-....++......+.+.+ ...+++ .|++.....-++..+..+|.+.. ....... -
T Consensus 151 ~~~~~~----------~~~~~~~~~~p~a~s~pgg~~---~~~~~g-~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-h 214 (549)
T KOG4660|consen 151 AMGLQS----------GTSFLNHFGSPLANSPPGGWP---RGQLFG-MLSPTRSSILLEHISSVDGSSPG-RETPLLN-H 214 (549)
T ss_pred cchhcc----------cchhhhhccchhhcCCCCCCc---CCccee-eeccchhhhhhhcchhccCcccc-ccccchh-h
Confidence 000000 000000000000000000111 112222 28888888777777788887655 2211111 1
Q ss_pred EEEEEecChhhHHHHHHhcCCcccc
Q 024262 164 YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 164 ~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.-|++|.+..++..+...+ |..+.
T Consensus 215 q~~~~~~~~~s~a~~~~~~-G~~~s 238 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEPRG-GFLIS 238 (549)
T ss_pred hhhhhhccccchhhcccCC-ceecC
Confidence 5678888888875555433 44443
No 114
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.05 E-value=1.1e-11 Score=109.49 Aligned_cols=133 Identities=24% Similarity=0.281 Sum_probs=113.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.+++||.||+..+.+.+|...|..+|.+..+.+ +..+..+|+||++|..+++|.+||. ++...+.|+
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~-f~d~~~~gK------- 736 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVA-FRDSCFFGK------- 736 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhh-hhhhhhhhh-------
Confidence 45678999999999999999999999987777666 3457889999999999999999999 444444441
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
..++|.|+|...|.++++.+|.++|.+.++.++...
T Consensus 737 --------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 737 --------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred --------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 468899999999999999999999999988766555
Q ss_pred C---CcEEEEEecChhhHHHHHHhcCCcccc
Q 024262 161 E---GTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 161 ~---~~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
+ .|.|+|.|.+..+|..++..++...+.
T Consensus 773 ~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 773 AGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ccccccceeccCCCcchhhhhcccchhhhhh
Confidence 4 479999999999999999888887776
No 115
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.05 E-value=7.2e-10 Score=94.11 Aligned_cols=81 Identities=27% Similarity=0.552 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.|||.+|...+-..+|+.||++||+|+..+++. +...++|+||++.+.++|.++|..|+.+.|+|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 467899999999999999999999999999998854 34568899999999999999999999999999999999998
Q ss_pred CCCC
Q 024262 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
+.+.
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 6543
No 116
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.05 E-value=5.2e-10 Score=94.91 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=75.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+||+|+|+++++++|..+|+..|.|..++++.|..+ ||+|++|.+.++|..|++.|||.++. |+.++|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~----gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN----GRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC----CceEEeec
Confidence 79999999999999999999999999999999998876 59999999999999999999999999 99999999
Q ss_pred CCCCCCCCCC
Q 024262 201 YDRSPSRSRS 210 (270)
Q Consensus 201 ~~~~~~r~r~ 210 (270)
+.....+.+.
T Consensus 95 ~~~~~~~~~~ 104 (435)
T KOG0108|consen 95 ASNRKNAERS 104 (435)
T ss_pred ccccchhHHH
Confidence 8866655443
No 117
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.05 E-value=3.2e-10 Score=92.15 Aligned_cols=82 Identities=24% Similarity=0.493 Sum_probs=74.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+.+|||++||.++++++|++.|.+||.|..+.++.| ..+++|+||.|.+++++.+++. +.-+.|.|+.+.|..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 569999999999999999999999999999988664 5779999999999999999999 888999999999999988
Q ss_pred CCCCCC
Q 024262 83 GSGRGP 88 (270)
Q Consensus 83 ~~~~~~ 88 (270)
+.....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 755443
No 118
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.04 E-value=5.9e-11 Score=97.07 Aligned_cols=148 Identities=24% Similarity=0.384 Sum_probs=117.2
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhccc--ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC-ccccCceEEEEecCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~~~~ 83 (270)
..+||+||.+.+++.+|..+|...- --..+ |+. .|||||.+.+...|.+|++.++| ..+.|+++.|.+...+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVK----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eee----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 3799999999999999999998542 11222 222 58999999999999999999998 5678999999988765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE-eeCCCC
Q 024262 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV-SRDSEG 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~-~~~~~~ 162 (270)
..+ ...+-|.|+|+...++.|..+...||.+..|.. +.+..+
T Consensus 77 kqr-------------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et 119 (584)
T KOG2193|consen 77 KQR-------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET 119 (584)
T ss_pred HHH-------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH
Confidence 221 246889999999999999999999999988754 344443
Q ss_pred cEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 163 ~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...-|+|...+.+..|+.+++|..+. ...+++.+
T Consensus 120 avvnvty~~~~~~~~ai~kl~g~Q~e----n~~~k~~Y 153 (584)
T KOG2193|consen 120 AVVNVTYSAQQQHRQAIHKLNGPQLE----NQHLKVGY 153 (584)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHhh----hhhhhccc
Confidence 45567888999999999999999887 44444443
No 119
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.2e-10 Score=85.06 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=71.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||++|...+++.-|...|-.||.|.+|.++.+.. .+|+||+|+-.++|..|+..||+.++. |+.|+|.
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~----GrtirVN 85 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF----GRTIRVN 85 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc----ceeEEEe
Confidence 47999999999999999999999999999999987744 379999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 024262 200 RYDRSP 205 (270)
Q Consensus 200 ~~~~~~ 205 (270)
.++...
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 987433
No 120
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=99.00 E-value=3e-09 Score=67.67 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=49.5
Q ss_pred CeEEEcCCCCCcCHHH----HHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 7 RTIYVGNLPSDIREYE----VEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~----l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..|+|.|||.+.+... |++|+..|| +|..|. .+.|+|.|.+++.|..|.+.|+|-.+.|.+|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999999988665 567777886 777763 5789999999999999999999999999999999985
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 121
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.99 E-value=2.5e-09 Score=87.39 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=69.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|.++|..||.|..+.+..+.. .|+|||+|.+.++|..|+..++|..+. ++.+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~----~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE----GRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC----CceeEee
Confidence 58999999999999999999999999999998887752 379999999999999999999999998 9999998
Q ss_pred cCC
Q 024262 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 864
No 122
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.98 E-value=5e-09 Score=70.20 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=64.6
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhc--ccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccc----CceEEE
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRV 77 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l~v 77 (270)
+||+|.|||...|.++|.+++.. .|...-+++.. ++...|||||.|.++++|....+.++|..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999999975 36666677744 4567999999999999999999999999995 677788
Q ss_pred EecCC
Q 024262 78 ELAHG 82 (270)
Q Consensus 78 ~~~~~ 82 (270)
.+|.-
T Consensus 82 ~yAri 86 (97)
T PF04059_consen 82 SYARI 86 (97)
T ss_pred ehhHh
Confidence 88764
No 123
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.98 E-value=1.7e-09 Score=82.29 Aligned_cols=72 Identities=18% Similarity=0.272 Sum_probs=60.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+|||++|++.+..+.|+.+|++||+|+...++.|+.+ ||+||+|.+.+.|.+|.+.-+ --|+ |++..+..
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piId----GR~aNcnl 87 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIID----GRKANCNL 87 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccc----ccccccch
Confidence 68999999999999999999999999999999988776 699999999999999987543 2333 55555444
Q ss_pred C
Q 024262 201 Y 201 (270)
Q Consensus 201 ~ 201 (270)
+
T Consensus 88 A 88 (247)
T KOG0149|consen 88 A 88 (247)
T ss_pred h
Confidence 4
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.97 E-value=4.8e-09 Score=91.08 Aligned_cols=189 Identities=11% Similarity=-0.046 Sum_probs=128.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.|.+-+.++++++...|++++|... .|..+.|.+ .+...|.++|+|..+.++++|+. -|.+.+-++.+.|..+-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 56788889999999999999999743 344444433 23337899999999999999999 67788888999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EE
Q 024262 82 GGSGRGPSSSDRRGGYGGGGAGGAGG-----AGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AE 155 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~-~~ 155 (270)
...-......... ...+.+....+. .+......+...+...+.+|||..||..+++.++.++|.....|++ |+
T Consensus 388 ~~~~~~a~~~~~~-~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 388 NLGRNGAPPFQAG-VPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred ccccccCcccccc-CCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 5422111111000 000111111110 0111111223345566889999999999999999999999888877 66
Q ss_pred EeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 156 VSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 156 ~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+...+.+ +.|||+|..++++..|...-+...++ .+.|+|+.
T Consensus 467 lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G----~r~irv~s 510 (944)
T KOG4307|consen 467 LTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG----HRIIRVDS 510 (944)
T ss_pred eccCCcccccchhhheeccccccchhhhcccccccC----ceEEEeec
Confidence 6554433 58999999999999998877776666 66666654
No 125
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=1.4e-08 Score=64.79 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=47.1
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeCC------CCcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 138 WQDLKDHMR----KAGDVCFAE-VSRDS------EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 138 ~~~l~~~f~----~~g~v~~~~-~~~~~------~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+++|.++|. .||.|..+. +..+. ..|++||+|.+.++|.+|+..|||..+. ++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~----gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD----GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEe
Confidence 567888888 999999885 44432 2479999999999999999999999998 777764
No 126
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.82 E-value=6.6e-09 Score=81.46 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
-+...|||+|+.+.+|.+++...|+.||.|..+.|.. .+.+++||||+|.+.+.+..|+. ||+..|.|..+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4678999999999999999999999999998777744 35789999999999999999999 9999999999999987
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 754
No 127
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.80 E-value=9e-08 Score=77.87 Aligned_cols=158 Identities=19% Similarity=0.203 Sum_probs=110.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEE---EEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD---IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++..|...+||...++.+|-.+|...-.... +-+...+.-.|.|.|.|.++|.-+.|++ -+.+.+.++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 56778889999999999999999985421111 1122235556899999999999999999 7888889999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcC-------CeeE
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-------DVCF 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g-------~v~~ 153 (270)
....-..- .+++......-........|.+.+||+++++.++.++|..-. .|.+
T Consensus 137 ~ge~f~~i-------------------agg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF 197 (508)
T KOG1365|consen 137 TGEEFLKI-------------------AGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF 197 (508)
T ss_pred CchhheEe-------------------cCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE
Confidence 54311000 000111111112223345677889999999999999996322 2444
Q ss_pred EEEeeCCCCcEEEEEecChhhHHHHHHh
Q 024262 154 AEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 154 ~~~~~~~~~~~afv~f~~~~~a~~a~~~ 181 (270)
|....++.+|-|||.|..+++|+.|+.+
T Consensus 198 V~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 198 VTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EECCCCCcccceEEEecCHHHHHHHHHH
Confidence 5555556678999999999999999975
No 128
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.79 E-value=1.5e-08 Score=82.18 Aligned_cols=172 Identities=20% Similarity=0.262 Sum_probs=128.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCC-ccccCceEEEEec
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~ 80 (270)
..+++|++++..++.+.++..+|..+|.+....+ ......++++++.|...+.+..|+. +.+ ..+.+..+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 4688999999999999989999999997776655 2245679999999999999999999 555 4556666555544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEE-EeCCCCCCCHHHHHHHHHhcCCeeEEEEeeC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI-VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
............ .....+..+++ |.+|+..++.++|..+|..+|.|..+.+...
T Consensus 166 ~~~~~~~~n~~~-------------------------~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 166 TRRGLRPKNKLS-------------------------RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred ccccccccchhc-------------------------ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 433211100000 01111224555 9999999999999999999999999999888
Q ss_pred CCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCCCCC
Q 024262 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSR 207 (270)
Q Consensus 160 ~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~r 207 (270)
... ++|+|.|.....+..++.. +...+. +..+.+......+..
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIG----GRPLRLEEDEPRPKS 267 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCccc----CcccccccCCCCccc
Confidence 766 4999999999999999987 777776 777777777654443
No 129
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=2.6e-08 Score=76.28 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=62.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+||++||+.+.+.+|+.+|..||.+.++.+.. +|+||+|++..+|..|+..+|+..+. +-.+.|+++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~----~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELC----GERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceec----ceeeeeeccc
Confidence 4789999999999999999999999999988776 48999999999999999999999998 4446666555
No 130
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.76 E-value=5e-08 Score=74.11 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=67.2
Q ss_pred ceEEEeCCCCCCCHHHHHH----HHHhcCCeeEEEEeeC-CCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 125 YRVIVRGLPSSASWQDLKD----HMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~----~f~~~g~v~~~~~~~~-~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.+|||.||+..+..++|+. +|++||.|.+|..... +..|.|||.|.+.+.|..|+..|+|..+- |..+++.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy----gK~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY----GKPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc----Cchhhee
Confidence 4999999999999999887 9999999999877644 44589999999999999999999999998 8999988
Q ss_pred cCCC
Q 024262 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+++.
T Consensus 86 yA~s 89 (221)
T KOG4206|consen 86 YAKS 89 (221)
T ss_pred cccC
Confidence 8863
No 131
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.74 E-value=9.7e-08 Score=81.47 Aligned_cols=78 Identities=27% Similarity=0.366 Sum_probs=70.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..+..|+|.+|...+..-+|+.+|++||.|+-.+++.+... -|+||++.+.++|.+||.+||.+++. |+-|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH----GrmIS 478 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH----GRMIS 478 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc----ceeee
Confidence 34678999999999999999999999999999999887654 29999999999999999999999999 99999
Q ss_pred eecCCC
Q 024262 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|+.++.
T Consensus 479 VEkaKN 484 (940)
T KOG4661|consen 479 VEKAKN 484 (940)
T ss_pred eeeccc
Confidence 988774
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.69 E-value=2e-07 Score=81.43 Aligned_cols=78 Identities=24% Similarity=0.408 Sum_probs=70.9
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.++.|||+||++.++++.|...|..||+|..++|+.. .....++||-|-+-.+|++|++.|+|+.|.+..|++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4678999999999999999999999999999999652 2457799999999999999999999999999999999
Q ss_pred ecCC
Q 024262 79 LAHG 82 (270)
Q Consensus 79 ~~~~ 82 (270)
|++.
T Consensus 253 Wgk~ 256 (877)
T KOG0151|consen 253 WGKA 256 (877)
T ss_pred cccc
Confidence 9854
No 133
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.65 E-value=8.3e-08 Score=84.62 Aligned_cols=77 Identities=16% Similarity=0.220 Sum_probs=69.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..+|+|+.|+..+++.+|..+|+.||.|..|.++... ++|||.+....+|.+|+.+|.+..+. ...|++.++-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~----~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVA----DKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhccccc----ceeeEEeeecc
Confidence 4699999999999999999999999999999887765 69999999999999999999998888 88898888765
Q ss_pred CCC
Q 024262 204 SPS 206 (270)
Q Consensus 204 ~~~ 206 (270)
..-
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 443
No 134
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.59 E-value=5.4e-08 Score=73.53 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=53.9
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.||||.||.++|||++|+++|+.|--...++|..-+. ...||++|++.+.|..|+..|.|..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-cceEeecHHHHHHHHHHHHHhhccee
Confidence 4899999999999999999999997666666644322 56899999999999999999998766
No 135
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.57 E-value=1.8e-07 Score=64.24 Aligned_cols=71 Identities=13% Similarity=0.286 Sum_probs=45.3
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC-----ccccCceEEEEec
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-----YNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-----~~~~g~~l~v~~~ 80 (270)
+.|+|.+++..++-++|+++|+.||.|..|.+... -..|||.|.++++|+.|+..+.. ..|.+..+.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 67999999999999999999999999999998653 35899999999999999876654 3566776666653
No 136
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.51 E-value=5.4e-07 Score=72.56 Aligned_cols=77 Identities=19% Similarity=0.201 Sum_probs=65.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCc-cccCccccceeeee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT-EFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~-~~~~~~~~~~i~v~ 199 (270)
...-.+|||++|...+++.+|.++|.+||+|..+.+.... ++|||+|.+.+.|+.|.++.-+. .|. |.+|.+.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~----G~Rl~i~ 298 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVIN----GFRLKIK 298 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeec----ceEEEEE
Confidence 3445799999999999999999999999999999888765 49999999999999998876553 334 8889888
Q ss_pred cCCC
Q 024262 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+...
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 7654
No 137
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.51 E-value=5.1e-07 Score=70.80 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=67.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...|+|.|||+.+.++||+++|..||.+..+-+..++.+ |.|-|.|...++|..|++.++|..++ |..+.+..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld----G~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD----GRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC----CceeeeEE
Confidence 378999999999999999999999999888888888777 79999999999999999999998877 77777766
Q ss_pred CC
Q 024262 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 54
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.50 E-value=2e-07 Score=71.91 Aligned_cols=158 Identities=16% Similarity=0.239 Sum_probs=111.2
Q ss_pred EEcCCCCCcCHHH-H--HHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 10 YVGNLPSDIREYE-V--EDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 10 ~V~nlp~~~t~~~-l--~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++.++-..+.++- | ...|+.|-......+..+ +...+++|+.|.....-.++...-++.+++-..|++.....-.
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswe 179 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWE 179 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccC
Confidence 4445544444443 2 566766655555444332 4557899999998888888887777777766654443322110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--
Q 024262 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-- 162 (270)
.+ ....-......||.+.|...++++.|...|.+|-.....+++++..+
T Consensus 180 --dP---------------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgK 230 (290)
T KOG0226|consen 180 --DP---------------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGK 230 (290)
T ss_pred --Cc---------------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccc
Confidence 00 01122234579999999999999999999999988877888877655
Q ss_pred --cEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 163 --~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
||+||.|.++.++..|+.+|+|..++ .+.|++..
T Consensus 231 SkgygfVSf~~pad~~rAmrem~gkyVg----srpiklRk 266 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAMREMNGKYVG----SRPIKLRK 266 (290)
T ss_pred cccceeeeecCHHHHHHHHHhhcccccc----cchhHhhh
Confidence 59999999999999999999999998 66665543
No 139
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.47 E-value=1.2e-07 Score=71.46 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=64.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+...+|||.|+...++++-|.++|-..|+|..+.|..+.+. .||||.|+++....-|++.+||..+. +..+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~----~~e~q~ 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE----EDEEQR 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc----cchhhc
Confidence 345689999999999999999999999999999999877655 49999999999999999999998887 555543
No 140
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.45 E-value=2e-07 Score=75.47 Aligned_cols=81 Identities=28% Similarity=0.385 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEE--------EEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
...-+|||.+||..+++++|..+|.+||.|.. |.| ++|+.+++-|.|.|.++..|+.|+..+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 45679999999999999999999999997743 333 4578899999999999999999999999999999
Q ss_pred ceEEEEecCCCC
Q 024262 73 CRLRVELAHGGS 84 (270)
Q Consensus 73 ~~l~v~~~~~~~ 84 (270)
.+|+|.++....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999887654
No 141
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.41 E-value=3e-07 Score=70.95 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++--.||-+.|..+++++.|-..|.+|-.....++ ..+++++||+||.|.++.++..|+..|||..++.++|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34467999999999999999999999876655555 457899999999999999999999999999999999988655
Q ss_pred C
Q 024262 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 4
No 142
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.41 E-value=1.6e-05 Score=67.52 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=62.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....|||.|||.++++++|+++|..||+|....|.... ...||||+|++.++++.|+.+- -..++ ++++.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig----~~kl~ 360 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG----GRKLN 360 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC----CeeEE
Confidence 334559999999999999999999999999886665432 2259999999999999999865 55555 88888
Q ss_pred eecCCC
Q 024262 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|+..+.
T Consensus 361 Veek~~ 366 (419)
T KOG0116|consen 361 VEEKRP 366 (419)
T ss_pred EEeccc
Confidence 887753
No 143
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.39 E-value=1.2e-08 Score=82.91 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=53.8
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccc
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.++|+|++|+..+-..++.++|..+|.|....+.. +....+|.|+|....+...|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 36899999999999999999999999998877733 2225678899999999999999 7776665
No 144
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.38 E-value=6.1e-07 Score=76.59 Aligned_cols=72 Identities=19% Similarity=0.245 Sum_probs=62.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.-++.+|+|.|||..+++++|..+|+.||+|..+..-.... +.+||+|.+..+|+.|++.|++.++. ++.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-~~~~v~FyDvR~A~~Alk~l~~~~~~----~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-GIVFVEFYDVRDAERALKALNRREIA----GKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-ceEEEEEeehHhHHHHHHHHHHHHhh----hhhhc
Confidence 34567999999999999999999999999998865544433 59999999999999999999999998 66665
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.35 E-value=4e-06 Score=53.64 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=48.0
Q ss_pred ceEEEeCCCCCCCHHH----HHHHHHhcC-CeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 125 YRVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..|+|.|||...+... |++++..+| .|..+ . ++.|+|.|.+.+.|..|.+.|+|..+. |..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVf----G~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVF----GNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS----SS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhcccccc----cceEEEE
Confidence 4799999999998765 577777877 56444 2 258999999999999999999999998 9999998
Q ss_pred cCCC
Q 024262 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8753
No 146
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.32 E-value=2.6e-06 Score=63.93 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=57.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
....++|..+|.-+.+.++..+|.++ |.|..+.+.++..+ |||||+|++++.|.-|.+.||+..+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 34578999999999999999999998 56666777677655 59999999999999999999999887
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.31 E-value=1.7e-06 Score=75.81 Aligned_cols=80 Identities=14% Similarity=0.117 Sum_probs=67.3
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-------cEEEEEecChhhHHHHHHhcCCccccCc
Q 024262 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 118 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-------~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
..-...+..|||+||++.++++.|...|..||+|..++|+..... .++||.|-+..+|+.|++.|+|..+.
T Consensus 168 DdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~-- 245 (877)
T KOG0151|consen 168 DDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM-- 245 (877)
T ss_pred CCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee--
Confidence 333455789999999999999999999999999999999976432 49999999999999999999998887
Q ss_pred cccceeeeecC
Q 024262 191 WARGRITVKRY 201 (270)
Q Consensus 191 ~~~~~i~v~~~ 201 (270)
...+++-+.
T Consensus 246 --~~e~K~gWg 254 (877)
T KOG0151|consen 246 --EYEMKLGWG 254 (877)
T ss_pred --eeeeeeccc
Confidence 555554444
No 148
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.31 E-value=3.7e-06 Score=67.80 Aligned_cols=75 Identities=28% Similarity=0.461 Sum_probs=67.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccc
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
...|||.|||.++|.+++.++|+++|.|.. |++..+..+ |-|++.|-..++..-|++.|++..+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r---- 209 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR---- 209 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc----
Confidence 456999999999999999999999997743 777777765 68999999999999999999999999
Q ss_pred cceeeeecCC
Q 024262 193 RGRITVKRYD 202 (270)
Q Consensus 193 ~~~i~v~~~~ 202 (270)
|..|+|+.++
T Consensus 210 g~~~rVerAk 219 (382)
T KOG1548|consen 210 GKKLRVERAK 219 (382)
T ss_pred CcEEEEehhh
Confidence 9999999876
No 149
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.28 E-value=9.8e-06 Score=54.41 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=61.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+|.|.|+|...+.++|.+++... |....+.++.|-. -|||||.|.+++.|..-.+.++|.....-...+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999888663 4566677776644 3799999999999999999999998874444555555
Q ss_pred ecC
Q 024262 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
.++
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 544
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.24 E-value=3.4e-06 Score=50.20 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=43.4
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHH
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
++.|-|.+.++... ++|...|.+||+|.++.+.. ....+||+|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~---~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE---STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC---CCcEEEEEECCHHHHHhhC
Confidence 36789999997765 45556888999999988852 2579999999999999986
No 151
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.21 E-value=2e-06 Score=69.92 Aligned_cols=81 Identities=21% Similarity=0.350 Sum_probs=71.9
Q ss_pred CCCCCeEE-EcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 3 GRFSRTIY-VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~i~-V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..++.++| |+||++++++++|+..|..+|.|..+.+.. ++.+++||||.|.....+..|+.. +...+++.++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 35566777 999999999999999999999999999843 578899999999999999999996 8899999999999
Q ss_pred ecCCCC
Q 024262 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
+.....
T Consensus 260 ~~~~~~ 265 (285)
T KOG4210|consen 260 EDEPRP 265 (285)
T ss_pred cCCCCc
Confidence 887663
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.15 E-value=1.2e-06 Score=67.73 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=59.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-----------CCCC----cEEEEEEcCHHHHHHHHHhcCCcc
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----------PRPP----CYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----------~~~~----g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
.+-.||+++||+.+...-|++||++||.|-.|++... +... .-|.|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999999331 1112 237899999999999999999999
Q ss_pred ccCce
Q 024262 70 FDGCR 74 (270)
Q Consensus 70 ~~g~~ 74 (270)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99886
No 153
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.12 E-value=1.4e-05 Score=70.22 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=65.0
Q ss_pred CCCC-eEEEcCCCCCcCHHHHHHHhhcccce-EEEEE--ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 4 RFSR-TIYVGNLPSDIREYEVEDLFYKYGRI-LDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~-~i~V~nlp~~~t~~~l~~~F~~~G~v-~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+.+ .|-+.|+|+.++-+||.++|..|-.+ .+|.+ ..+|.+.|-|.|.|++.++|..|...|++..|..++|.+..
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4556 78899999999999999999999644 33444 33588999999999999999999999999999999998763
No 154
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.12 E-value=9e-06 Score=69.69 Aligned_cols=75 Identities=25% Similarity=0.392 Sum_probs=60.5
Q ss_pred CCeEEEcCCCCCcC------HHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccc-CceEE
Q 024262 6 SRTIYVGNLPSDIR------EYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLR 76 (270)
Q Consensus 6 s~~i~V~nlp~~~t------~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~ 76 (270)
-..|+|.|+|.--. ..-|..+|+++|+|.++.+.. .|..+||.|++|.++.+|+.|++.|||..|+ .+.+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 35789999987522 233568899999999999964 3678999999999999999999999999885 66666
Q ss_pred EEec
Q 024262 77 VELA 80 (270)
Q Consensus 77 v~~~ 80 (270)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6544
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.10 E-value=1e-05 Score=65.08 Aligned_cols=75 Identities=23% Similarity=0.441 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCcCHHH----H--HHHhhcccceEEEEEec-CC---CCCc--EEEEEEcCHHHHHHHHHhcCCccccCce
Q 024262 7 RTIYVGNLPSDIREYE----V--EDLFYKYGRILDIELKI-PP---RPPC--YCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~----l--~~~F~~~G~v~~~~~~~-~~---~~~g--~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.-|||-+||+.+..|+ | .++|.+||+|..|.+.+ +. ..-+ -.||+|.+.|+|..+|...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999999877766 2 47999999999998833 21 1111 2499999999999999999999999999
Q ss_pred EEEEecC
Q 024262 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
|+..|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998874
No 156
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.09 E-value=2.5e-05 Score=61.51 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=66.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....++|+|+...++.++++.+|+.||.|..+.+..+... +|+||+|.+.+.++.|+. |++..+. +..|.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~----~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP----GPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc----cccce
Confidence 34578999999999999999999999999988888777655 599999999999999999 9999998 77777
Q ss_pred eecCC
Q 024262 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|....
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 76654
No 157
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.09 E-value=8e-06 Score=56.15 Aligned_cols=59 Identities=27% Similarity=0.503 Sum_probs=40.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCc
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~ 185 (270)
+.|+|.+++..++.++|++.|+.||.|.+|.+..... .|+|.|.+.+.|+.|++++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999999887653 8999999999999999887554
No 158
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.05 E-value=3.4e-05 Score=52.21 Aligned_cols=76 Identities=20% Similarity=0.288 Sum_probs=54.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEe----------cCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCc
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK----------IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~----------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
...+.|.|-+.|+. ....|.+.|++||.|.+..-. .........-|+|.++.+|.+||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 35678999999988 667888999999999887510 001235688999999999999999 899999886
Q ss_pred e-EEEEecC
Q 024262 74 R-LRVELAH 81 (270)
Q Consensus 74 ~-l~v~~~~ 81 (270)
. +-|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 4 4466663
No 159
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.97 E-value=2.4e-05 Score=65.04 Aligned_cols=66 Identities=27% Similarity=0.244 Sum_probs=56.2
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCC--------C--------CCcEEEEEEcCHHHHHHHHHhcCCc
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--------R--------PPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~--------~--------~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
++++|.+.|||.+-.-+.|.+||+.||.|..|.|...| . .+-+|||+|.+.+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 68999999999999999999999999999999995431 1 1457999999999999999987664
Q ss_pred cc
Q 024262 69 NF 70 (270)
Q Consensus 69 ~~ 70 (270)
..
T Consensus 310 ~~ 311 (484)
T KOG1855|consen 310 QN 311 (484)
T ss_pred hh
Confidence 43
No 160
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.96 E-value=5.6e-06 Score=71.29 Aligned_cols=77 Identities=12% Similarity=0.226 Sum_probs=65.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhh-cccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc---cCceEEEEe
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~ 79 (270)
..++.|+|.||-..+|.-+|++|+. .+|.|.++ |+ .+-+..|||.|.+.++|......|||+.| +++.|.|.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 6789999999999999999999999 57777776 32 12256799999999999999999999999 678899999
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8643
No 161
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.95 E-value=4.3e-06 Score=64.91 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=53.7
Q ss_pred HHHHHHhh-cccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 21 YEVEDLFY-KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~l~~~F~-~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++|...|. +||+|+++.+-.+ ....|.+||.|..+++|++|+..||+-.|.|++|..+++..+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 56666666 8999999977332 355889999999999999999999999999999999998765
No 162
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.87 E-value=5.9e-05 Score=58.73 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=46.9
Q ss_pred HHHHHHHH-hcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 139 QDLKDHMR-KAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 139 ~~l~~~f~-~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
++|...|+ +||+|..+.+-.+... |-++|.|...++|+.|++.||+..+. |+.|..+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc----CCcceeeecC
Confidence 45555565 8999988766554322 68999999999999999999999999 8888755543
No 163
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.82 E-value=7.7e-05 Score=63.58 Aligned_cols=60 Identities=25% Similarity=0.366 Sum_probs=55.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhh-cccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHH
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~ 63 (270)
++.+|||||+||..++.++|-.+|+ .||.|..+-|=.| +-++|-|=|.|.+.++-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 7899999999999999999999999 7999999988444 5789999999999999999997
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.80 E-value=0.00011 Score=52.74 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=46.6
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+|.+.|..||+|.=+++.. +.-+|+|.+-++|.+|+. ++|..|.|+.|+|....+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 36778888999998888763 468999999999999999 9999999999999986654
No 165
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.80 E-value=4.7e-05 Score=68.49 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=69.2
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...|+|.|+|+..|.+.|+.+|..+|.+.++.+ ...|+++|.|||.|.++.+|..++...+.+.+.-..+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 457899999999999999999999999999877 45689999999999999999999999999888888888887665
No 166
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.76 E-value=0.00012 Score=57.03 Aligned_cols=102 Identities=25% Similarity=0.258 Sum_probs=79.9
Q ss_pred HHHHHHHhcCCccccCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCC
Q 024262 57 DAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA 136 (270)
Q Consensus 57 ~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~ 136 (270)
-|..|...|++....|+.|.|.|+-.. .|+|.||..-+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a------------------------------------------~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA------------------------------------------ELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc------------------------------------------eEEEEecchhh
Confidence 356677779999999999999998653 89999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 137 SWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+.+.+.|..||+|...-+..+.. ++-++|+|...-.|.+|+..+...-+.....+...-|..
T Consensus 44 sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 44 SNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred hhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 9999999999999998855554433 358999999999999999988554444333344444433
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.66 E-value=0.00016 Score=42.91 Aligned_cols=52 Identities=19% Similarity=0.350 Sum_probs=41.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHH
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAI 179 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~ 179 (270)
..|-|.+.+....+..| .+|..||+|..+.+.... ...+|+|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-~~F~~fGeI~~~~~~~~~--~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-EHFASFGEIVDIYVPEST--NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-HHHHhcCCEEEEEcCCCC--cEEEEEECCHHHHHhhC
Confidence 45778888877765544 588899999998877332 49999999999999985
No 168
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.55 E-value=5.2e-05 Score=58.90 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=58.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---------c-------EEEEEecChhhHHHHHHhcCCccc
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---------T-------YGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---------~-------~afv~f~~~~~a~~a~~~l~g~~~ 187 (270)
+-.||+++||+.+....|+++|..||.|-.|.+...... + -++|+|.+...|..+...||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 468999999999999999999999999999999876433 1 489999999999999999999999
Q ss_pred c
Q 024262 188 R 188 (270)
Q Consensus 188 ~ 188 (270)
+
T Consensus 154 g 154 (278)
T KOG3152|consen 154 G 154 (278)
T ss_pred C
Confidence 8
No 169
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.47 E-value=0.00044 Score=56.55 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=63.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.....+|||-+||..+++++|.++|.++|.|.. ++|.++..+ +-|.|.|++...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 345679999999999999999999999997642 444444433 58999999999999999999999998
Q ss_pred CccccceeeeecCC
Q 024262 189 NPWARGRITVKRYD 202 (270)
Q Consensus 189 ~~~~~~~i~v~~~~ 202 (270)
+..|+|..+.
T Consensus 143 ----gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 ----GNTIKVSLAE 152 (351)
T ss_pred ----CCCchhhhhh
Confidence 6777766555
No 170
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.46 E-value=0.00037 Score=55.30 Aligned_cols=62 Identities=26% Similarity=0.357 Sum_probs=50.3
Q ss_pred HHHHHHHhhcccceEEEEEecCC-C---CCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 20 EYEVEDLFYKYGRILDIELKIPP-R---PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 20 ~~~l~~~F~~~G~v~~~~~~~~~-~---~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++.+...+||.|..|.|.... . -.--.||+|..+++|.+|+-.|||.+|+|+.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45677888999999999885431 1 12247999999999999999999999999999887754
No 171
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.44 E-value=0.00014 Score=58.99 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=63.3
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.-++||+||-+-+|++||.+.+...| .|.++++.+ +|.++|||+|-..+..++++.++.|-...|+|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34689999999999999999888766 556666633 5899999999999999999999999999999987666554
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0003 Score=60.71 Aligned_cols=65 Identities=28% Similarity=0.403 Sum_probs=55.2
Q ss_pred cceEEEeCCCCCCC------HHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 124 EYRVIVRGLPSSAS------WQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~V~nl~~~~~------~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...|+|.|+|---. ...|..+|+++|+++.+.++.+..+ ||.|++|++..+|+.|++.|||..++
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 46889999884332 2357899999999999999877665 59999999999999999999999998
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.33 E-value=0.00076 Score=54.62 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=60.4
Q ss_pred CcceEEEeCCCCCCCHHHH------HHHHHhcCCeeEEEEeeCCCC-----c--EEEEEecChhhHHHHHHhcCCccccC
Q 024262 123 SEYRVIVRGLPSSASWQDL------KDHMRKAGDVCFAEVSRDSEG-----T--YGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l------~~~f~~~g~v~~~~~~~~~~~-----~--~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
...-+||.+|++.+..+++ .++|.+||.|..+-+.+.... + -.||+|...++|..||.+.+|..++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D- 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD- 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc-
Confidence 4468999999999988773 689999999988776554321 2 3599999999999999999999998
Q ss_pred ccccceeeeecC
Q 024262 190 PWARGRITVKRY 201 (270)
Q Consensus 190 ~~~~~~i~v~~~ 201 (270)
|+.|+..+.
T Consensus 192 ---Gr~lkatYG 200 (480)
T COG5175 192 ---GRVLKATYG 200 (480)
T ss_pred ---CceEeeecC
Confidence 888875443
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.31 E-value=0.0011 Score=55.36 Aligned_cols=66 Identities=17% Similarity=0.322 Sum_probs=56.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeC---CCC--------------cEEEEEecChhhHHHHHHhcC
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEG--------------TYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~--------------~~afv~f~~~~~a~~a~~~l~ 183 (270)
..+..+|.+.|||.+-..+.|.++|..+|.|..|.|.+. +.. -+|+|+|+..+.|.+|.+.|+
T Consensus 228 el~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~ 307 (484)
T KOG1855|consen 228 ELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLN 307 (484)
T ss_pred ccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhc
Confidence 345689999999999999999999999999999999876 211 189999999999999999885
Q ss_pred Ccc
Q 024262 184 DTE 186 (270)
Q Consensus 184 g~~ 186 (270)
...
T Consensus 308 ~e~ 310 (484)
T KOG1855|consen 308 PEQ 310 (484)
T ss_pred hhh
Confidence 543
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.25 E-value=0.0022 Score=41.24 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=42.6
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
.+..+|+ .|..+...||.+||+.||.|. |.++.+ .-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT----TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC----CcEEEEeecHHHHHHHHHHhcc
Confidence 3566776 999999999999999999865 555543 4799999999999999987763
No 176
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.25 E-value=0.00042 Score=62.96 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=69.7
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccC--ceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~ 80 (270)
..+++.++|++|++-+....|...|..||.|..|.+-.. .-||||.|++...|+.|+..|-|..|++ +.|.|.++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 367899999999999999999999999999999888543 5799999999999999999999999974 67899888
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 529 ~~~ 531 (975)
T KOG0112|consen 529 SPP 531 (975)
T ss_pred cCC
Confidence 765
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.16 E-value=0.0015 Score=51.95 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=50.6
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCC-----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 138 WQDLKDHMRKAGDVCFAEVSRDSEG-----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~-----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
++++.+.+++||.|..|-|...+.. --.||+|...++|.+|+-.|||..|+ |+.+...++.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG----Gr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG----GRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec----ceeeeheecc
Confidence 4568899999999998877766433 26899999999999999999999999 8887766554
No 178
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.14 E-value=0.0025 Score=49.85 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=60.6
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCc----cccCceEEEEec
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGY----NFDGCRLRVELA 80 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~----~~~g~~l~v~~~ 80 (270)
..|+|.||+.-++.+.|.+-|..||+|....++.+ +++.+-++|+|...-.|.+|+..++.- ...+.+.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999988766544 577888999999999999999877432 234566666555
Q ss_pred C
Q 024262 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 179
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.06 E-value=0.004 Score=37.93 Aligned_cols=54 Identities=17% Similarity=0.306 Sum_probs=43.6
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcc---cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKY---GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~---G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..|+|.|+ .+++.+||+.+|..| .....|.++.+ .-|=|-|.+.+.|.+||..|
T Consensus 6 eavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 47999998 468999999999988 13456777665 35889999999999999854
No 180
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.05 E-value=0.0072 Score=41.75 Aligned_cols=66 Identities=14% Similarity=0.118 Sum_probs=47.5
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcc-cceEEEEEecCCCCCc-EEEEEEcCHHHHHHHHHhcCCcccc
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKY-GRILDIELKIPPRPPC-YCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+..+.+...|..++.++|..+.+.+ ..|..++|..++.+-. .++|+|.++++|......+||..|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444444444445566676666655 3677888888876544 5788999999999999999998875
No 181
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.94 E-value=9e-05 Score=65.00 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=65.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.-+|||+||...+..+-+..++..||-|..+.... |+|++|..+..+..|+..|+-..++|+.+.+.....
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 3567899999999999999999999999998887653 999999999999999999999999999988877543
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.91 E-value=0.0014 Score=49.67 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=50.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhc-ccceE---EEEEecC-----CCCCcEEEEEEcCHHHHHHHHHhcCCccccCc-
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRIL---DIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC- 73 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~-~G~v~---~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~- 73 (270)
.....|.|++||+++|++++.+.+.. ++... .+.-... .....-|||.|.+.+++......++|..|-+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 56679999999999999999997776 66552 2221111 12234699999999999999999999777432
Q ss_pred ----eEEEEecCC
Q 024262 74 ----RLRVELAHG 82 (270)
Q Consensus 74 ----~l~v~~~~~ 82 (270)
+..|+++..
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 455666654
No 183
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.88 E-value=0.0044 Score=42.00 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=45.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEE-E----------eeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAE-V----------SRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~-~----------~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..-|.|-+.|+. ....|.++|++||.|.... + .....++...|.|.++.+|.+||. .||..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 356889999988 5566788999999997764 1 111223589999999999999998 6888887
No 184
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.68 E-value=0.009 Score=51.84 Aligned_cols=85 Identities=16% Similarity=0.216 Sum_probs=68.0
Q ss_pred CHHHHHHHHHhcCCccccCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCC
Q 024262 54 NARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLP 133 (270)
Q Consensus 54 ~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~ 133 (270)
+++=...+|....++.++.+-++|...... +.|++.-||
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~kR-----------------------------------------cIvilREIp 184 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNHKR-----------------------------------------CIVILREIP 184 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCcce-----------------------------------------eEEEEeecC
Confidence 444455677777777777777777765544 789999999
Q ss_pred CCCCHHHHHHHHHh--cCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhc
Q 024262 134 SSASWQDLKDHMRK--AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 134 ~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l 182 (270)
...-.++++.+|.. +-++++|++..+. -=||+|++..||+.|.+.|
T Consensus 185 ettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 185 ETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred CCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHH
Confidence 99999999999966 6788899888776 4799999999999997554
No 185
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.59 E-value=0.024 Score=34.56 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=44.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhc---CCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhc
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKA---GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l 182 (270)
..|+|.++. .++.++|+.+|..| .....++.+.+. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 578999985 47888999999999 134467777776 7899999999999999865
No 186
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.58 E-value=0.019 Score=36.74 Aligned_cols=58 Identities=22% Similarity=0.323 Sum_probs=36.8
Q ss_pred CcCHHHHHHHhhccc-----ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 17 DIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 17 ~~t~~~l~~~F~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+++.+|..++...+ .|-.|.+.. .|+||+-... .|..++..|++..+.|++|.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~-----~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD-----NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S-----S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee-----eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 388999999888653 667788863 5999998754 888899999999999999999864
No 187
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.58 E-value=0.00028 Score=58.77 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=67.9
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
.++.+.|.|||+....+.|..|+.+||.|..|....+.......-|+|...+.+..||..|+|..+....++|.|-....
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 46779999999999999999999999999998876554334445578999999999999999999999999998876543
No 188
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.49 E-value=0.025 Score=40.40 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=57.3
Q ss_pred CCCCeEEEcCCCCCcCH-HHH---HHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 4 RFSRTIYVGNLPSDIRE-YEV---EDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~-~~l---~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
-+-.||.|.-|..++.. +|| ...++.||+|..|.+.- +..|.|.|.+..+|=.|+..+.. ...|..+.+.+
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 35568999888887553 444 45667899999998743 67899999999999999998876 66778888877
Q ss_pred cCC
Q 024262 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
-+.
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 543
No 189
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.47 E-value=0.0014 Score=53.33 Aligned_cols=77 Identities=30% Similarity=0.534 Sum_probs=59.8
Q ss_pred CeEEEcCCCCCcCHHHHH---HHhhcccceEEEEEecCC------CCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEE
Q 024262 7 RTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+-+||-+|+.....+.+. +.|.+||.|..|.+..+. ....-+||+|...++|..||...+|+.++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457788888886555544 589999999999885432 11234899999999999999999999999999887
Q ss_pred EecCCC
Q 024262 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776543
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.45 E-value=0.013 Score=44.57 Aligned_cols=63 Identities=27% Similarity=0.264 Sum_probs=46.3
Q ss_pred cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC--CccccCceEEEEecCCC
Q 024262 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELAHGG 83 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~~~~~ 83 (270)
-..+.|+++|..|+.+..+..... -+=..|.|.+.++|..|...|+ +..+.|..|+|.++...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 345889999999999888877543 3458999999999999999999 89999999999998544
No 191
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.44 E-value=0.0056 Score=49.70 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=8.7
Q ss_pred CcEEEEEEcCHHHHHHHHH
Q 024262 45 PCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~ 63 (270)
+.-.||.|. ++....|+.
T Consensus 173 RT~v~vry~-pe~iACaci 190 (367)
T KOG0835|consen 173 RTDVFVRYS-PESIACACI 190 (367)
T ss_pred ccceeeecC-HHHHHHHHH
Confidence 445666665 333444443
No 192
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.013 Score=47.08 Aligned_cols=71 Identities=17% Similarity=0.260 Sum_probs=54.5
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCce-EEEEecCCC
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-LRVELAHGG 83 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-l~v~~~~~~ 83 (270)
=|-|-++|+. .-..|..+|++||.|.......+ -.+-+|.|.+..+|++||. .||+.|+|-. |-|..+..+
T Consensus 199 WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~n---gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSN---GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCcc-chhHHHHHHHhhCeeeeeecCCC---CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 4566677665 34678889999999988766433 5689999999999999999 8999997654 556665544
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.20 E-value=0.0085 Score=51.99 Aligned_cols=69 Identities=17% Similarity=0.254 Sum_probs=54.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhh--cccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC--ccccCceEEE
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFY--KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRV 77 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~--~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v 77 (270)
.-|.|+|.-||..+-.|+|+-||. .|-++++|.+..+ ..=||+|++..||+.|.+.|.. ..|-|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 457899999999999999999998 4789999988442 2479999999999999876654 4455666543
No 194
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.13 E-value=0.033 Score=40.24 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=44.7
Q ss_pred HHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 140 DLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 140 ~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+|-+.|..||.++-+.+..+ .-+|+|.+-+.|.+|+. ++|.++. |..+++....
T Consensus 52 ~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~----g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVN----GRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEET----TEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEEC----CEEEEEEeCC
Confidence 67888999999998888775 68999999999999998 8999998 8888776543
No 195
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.98 E-value=0.024 Score=48.08 Aligned_cols=66 Identities=18% Similarity=0.350 Sum_probs=58.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcc-cceEEEEEecCCCCCcE-EEEEEcCHHHHHHHHHhcCCcccc
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKY-GRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~-G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
++.|+|-.+|..+|..||..+...+ -.|.+|.++.++.+-.| ++|.|.+.++|......+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7899999999999999999988754 47889999888766554 789999999999999999998885
No 196
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.85 E-value=0.0048 Score=52.41 Aligned_cols=76 Identities=13% Similarity=0.215 Sum_probs=63.6
Q ss_pred CCCCeEEEcCCCCCcC-HHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIR-EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t-~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.+.|-+.-+|+..+ -++|...|.+||+|.+|.+-.. .--|.|+|.+--+|-.|.. .++..|+++.|+|.|-..
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 4566777777777744 5899999999999999998443 3469999999999999988 899999999999999776
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.83 E-value=0.046 Score=35.30 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=41.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g 184 (270)
...+|+ +|..+...||.++|+.||.|. |..+.+. .|||.....+.|..|+..+..
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 445555 999999999999999999986 4444443 899999999999998887764
No 198
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.28 E-value=0.023 Score=49.84 Aligned_cols=78 Identities=13% Similarity=0.124 Sum_probs=58.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...+.|+|.||-...|.-+|+.++..- |.|....| +...-.|||.|.+.++|.....+|||..... ..++.|.+.+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~-sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DKIKSHCYVSYSSVEEAAATREALHNVQWPP-SNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH--HHhhcceeEecccHHHHHHHHHHHhccccCC-CCCceeEeee
Confidence 456899999999999999999999964 45544422 2222379999999999999999999987751 1255555555
Q ss_pred CC
Q 024262 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 519 ~~ 520 (718)
T KOG2416|consen 519 VR 520 (718)
T ss_pred cc
Confidence 43
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.18 E-value=0.29 Score=33.88 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=47.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCc--EEEEEecChhhHHHHHHhcCCcccc
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~--~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+.+...|..++.++|..+.+.+- .|..+.+.++...+ .+.++|.+.+.|.+-...+||+.+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444555556666667766666655 45567888776543 7999999999999999999999986
No 200
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.02 E-value=0.15 Score=33.64 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=45.3
Q ss_pred EEEEEcCHHHHHHHHHhcCC--ccccCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024262 48 CFVEFENARDAEDAIRGRDG--YNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (270)
|+|+|.++.-|+..++ +.. ..+++..+.|............. .-....+..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------------------------qv~~~vs~r 53 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKF--------------------------QVFSGVSKR 53 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEE--------------------------EEEEcccCC
Confidence 6899999999999887 443 44466666665543321111000 001123457
Q ss_pred eEEEeCCCCCCCHHHHHHH
Q 024262 126 RVIVRGLPSSASWQDLKDH 144 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~ 144 (270)
+|.|.|||..+.+++|++.
T Consensus 54 tVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 54 TVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred EEEEeCCCCCCChhhheee
Confidence 9999999999999999875
No 201
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.01 E-value=0.093 Score=44.94 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=55.8
Q ss_pred cceEEEeCCCCCC-CHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 124 EYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~V~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+.|.+...|..+ +.++|...|.+||.|..|.+-... --|.|+|.+..+|-+|.. .++..|+ ++.|+|.+..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avln----nr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLN----NRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceec----CceeEEEEec
Confidence 3445555555544 568899999999999998876663 269999999999977765 7888887 7888887765
Q ss_pred C
Q 024262 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
-
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 202
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=94.81 E-value=0.052 Score=44.30 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=6.2
Q ss_pred CCCHHHHHHHHH
Q 024262 135 SASWQDLKDHMR 146 (270)
Q Consensus 135 ~~~~~~l~~~f~ 146 (270)
.+++++|.+++-
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 345556555543
No 203
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=94.73 E-value=0.068 Score=43.92 Aligned_cols=65 Identities=14% Similarity=0.182 Sum_probs=53.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..++||+||-+.+|++||.+.+...| .+.++++..+... |||+|...+.....+.++.|-.+.|.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 46899999999999999999888877 3455666555433 69999999999999999988888887
No 204
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.26 E-value=0.29 Score=35.09 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=47.3
Q ss_pred CCcceEEEeCCCCCC----CHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc
Q 024262 122 HSEYRVIVRGLPSSA----SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~----~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
.+..+|.|.=|..++ +...+.+.++.||+|..|...... .|.|.|++...|..|+.+++...
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 445678887555444 344567778899999998776543 89999999999999999987643
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.88 E-value=0.042 Score=50.29 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=57.9
Q ss_pred EcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc--cCceEEEEecCCC
Q 024262 11 VGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVELAHGG 83 (270)
Q Consensus 11 V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~~~~~ 83 (270)
+.|.+-+.+-.-|..+|..||.|..+....+ -..|.|+|...+.|..|++.|+|..+ -|-+.+|.+++.-
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3445556778889999999999999877544 46799999999999999999999776 5888899888754
No 206
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.83 E-value=0.39 Score=42.39 Aligned_cols=79 Identities=22% Similarity=0.380 Sum_probs=62.1
Q ss_pred CCCCCeEEEcCCCCC-cCHHHHHHHhhcc----cceEEEEEecC-------------CC-------------C-------
Q 024262 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP-------------PR-------------P------- 44 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~-~t~~~l~~~F~~~----G~v~~~~~~~~-------------~~-------------~------- 44 (270)
+..++.|-|-||... +..+||.-+|+.| |.|..|.|..+ |. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467899999999987 8899999999976 68999988331 11 0
Q ss_pred -----------------CcEEEEEEcCHHHHHHHHHhcCCcccc--CceEEEEecC
Q 024262 45 -----------------PCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (270)
Q Consensus 45 -----------------~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~ 81 (270)
.=||.|+|.+.+.|......++|+.|. +..|-+.+..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 127999999999999999999999996 4455555543
No 207
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.56 E-value=0.11 Score=39.44 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=44.7
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEe---eCCCC------cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVS---RDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~-~g~v~~~~~~---~~~~~------~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...|.|.+||+.+|++++.+.+.. ++........ ..... .-|||.|.+.+++..-...++|..+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 468999999999999999987776 5555221211 11111 27999999999999999999998776
No 208
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.53 E-value=0.43 Score=40.82 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=57.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCc--EEEEEecChhhHHHHHHhcCCcccc
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~--~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...|.|-.+|..++-.||..++..+- .|.++.++++.... .++|+|.+.++|..-.+.+||..+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999998765 57778988876553 7999999999999999999999987
No 209
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.14 E-value=1 Score=36.49 Aligned_cols=76 Identities=16% Similarity=0.177 Sum_probs=58.5
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCC----------CCCcEEEEEEcCHHHHHHH----HHhcCC--cc
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP----------RPPCYCFVEFENARDAEDA----IRGRDG--YN 69 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~----------~~~g~afV~f~~~~~a~~A----~~~l~~--~~ 69 (270)
++.|...||..+++-..+.+.|-+||+|+.|++..+. +....+.+-|-+.+.|... ++.|+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999996543 3356789999999988764 333433 33
Q ss_pred ccCceEEEEecC
Q 024262 70 FDGCRLRVELAH 81 (270)
Q Consensus 70 ~~g~~l~v~~~~ 81 (270)
+.-..|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 556677777664
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.13 E-value=0.15 Score=45.62 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=57.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.+..+..++||+|+...+..+-++.+...+|.|..+.... |+|..|.....+..|+..++-..++
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCC
Confidence 3445678999999999999999999999999998887766 9999999999999999988887776
No 211
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.69 E-value=0.8 Score=28.42 Aligned_cols=55 Identities=20% Similarity=0.330 Sum_probs=43.4
Q ss_pred CcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEE
Q 024262 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.++-++|+..+..|+ -..|..-. .| -||.|.+..+|+++....|+..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 377899999999995 34444433 34 489999999999999999999888777654
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=92.28 E-value=0.21 Score=36.78 Aligned_cols=112 Identities=18% Similarity=0.130 Sum_probs=72.5
Q ss_pred CcCHHHHHHHhhc-ccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCCCCCCCCCCCCC
Q 024262 17 DIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRG 95 (270)
Q Consensus 17 ~~t~~~l~~~F~~-~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~ 95 (270)
+.+-..|.+.+.. ++....+.+..-+ .++..++|.+++++..++. .....++|..|.++.-.+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~--~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~------- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG--DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE------- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC--CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc-------
Confidence 4566666666653 3333334442211 5789999999999999998 666777888888776653311000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 96 GYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
........=|.|.|||.. .+++-+..+.+.+|.+..++.....
T Consensus 98 ----------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 98 ----------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred ----------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 000011234677899976 6778899999999999888766544
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.29 E-value=0.46 Score=38.48 Aligned_cols=59 Identities=19% Similarity=0.269 Sum_probs=45.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024262 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
=|.|.++|+...- .|..+|++||.|+++... .++++-+|.|.+..+|.+||. .+|+.|+
T Consensus 199 WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 199 WVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred eEEEeccCccchh-HHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 4556666665443 467789999999765544 555699999999999999998 5787776
No 214
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.29 E-value=1 Score=34.37 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=43.6
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC--CccccCccccceeeeecCC
Q 024262 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~--g~~~~~~~~~~~i~v~~~~ 202 (270)
...+.|+++|..++.+..+..++.- +-..|.|.+.+.|..|...|+ +..+. +..+++.+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~----g~~l~~yf~~ 69 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFN----GKRLRVYFGQ 69 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEET----TEE-EEE---
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccC----CCceEEEEcc
Confidence 3457899999999988777666543 368999999999999999999 88887 7777777664
No 215
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=90.43 E-value=0.14 Score=41.90 Aligned_cols=7 Identities=0% Similarity=0.510 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 024262 141 LKDHMRK 147 (270)
Q Consensus 141 l~~~f~~ 147 (270)
|.+-|++
T Consensus 229 Id~~ie~ 235 (453)
T KOG2888|consen 229 IDEKIEE 235 (453)
T ss_pred HHHHHHh
Confidence 3333333
No 216
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.32 E-value=0.11 Score=42.54 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=51.6
Q ss_pred ceEEEeCCCCCCCHHHH---HHHHHhcCCeeEEEEeeCCC--C---c--EEEEEecChhhHHHHHHhcCCcccc
Q 024262 125 YRVIVRGLPSSASWQDL---KDHMRKAGDVCFAEVSRDSE--G---T--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l---~~~f~~~g~v~~~~~~~~~~--~---~--~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+||.+|+..+..+.+ .+.|.+||.|..+-+..+.. . + -++|+|+..++|..||...+|..++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 56888889888766655 46788899998887777551 1 1 6899999999999999999998887
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.89 E-value=1.8 Score=26.90 Aligned_cols=50 Identities=18% Similarity=0.207 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024262 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..++-++++..+..|+-. .+..+.. --||.|.+..+|+++....+|..+.
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~t--GfYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDRT--GFYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecCC--EEEEEECChHHHHHHHHhcCCCEEE
Confidence 456778999999998632 2333332 2579999999999999999998776
No 218
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=89.72 E-value=0.25 Score=45.54 Aligned_cols=72 Identities=17% Similarity=0.117 Sum_probs=57.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 127 l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.++.|.+-..+-.-|..+|..||.|.......+-+ .|.|+|.+.+.|..|+++++|+++-.. |...+|-+++
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~~--g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSVT--GAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCccccc--CCceeEEecc
Confidence 34444555566667999999999999988877653 899999999999999999999987632 5556776666
No 219
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=89.42 E-value=0.14 Score=40.78 Aligned_cols=67 Identities=18% Similarity=0.371 Sum_probs=48.2
Q ss_pred CCCCeEEEcCCCCC------------cCHHHHHHHhhcccceEEEEEec--------CCCC-----CcE---------EE
Q 024262 4 RFSRTIYVGNLPSD------------IREYEVEDLFYKYGRILDIELKI--------PPRP-----PCY---------CF 49 (270)
Q Consensus 4 ~~s~~i~V~nlp~~------------~t~~~l~~~F~~~G~v~~~~~~~--------~~~~-----~g~---------af 49 (270)
+-.-||++.+||.. -+++-|+..|..||.|..|.|.. +++. .|| ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 45568999999874 35678999999999999998832 2222 333 45
Q ss_pred EEEcCHHHHHHHHHhcCCccc
Q 024262 50 VEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~ 70 (270)
|+|...---..|+..|-|+.|
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 667666667778888888776
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.53 E-value=2.7 Score=26.69 Aligned_cols=59 Identities=10% Similarity=0.239 Sum_probs=35.0
Q ss_pred CCCCHHHHHHHHHhcCC-----eeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 134 SSASWQDLKDHMRKAGD-----VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~-----v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..++..+|..++...+. |-.+++..+ |+||+... +.|..++..|++..+. |+.+.++.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~----gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIK----GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SS----S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCC----CeeEEEEEC
Confidence 45677888888877654 445666664 89998765 4889999999999988 888887653
No 221
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=87.99 E-value=1.6 Score=35.09 Aligned_cols=47 Identities=28% Similarity=0.352 Sum_probs=35.5
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEEcCH
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
.+-|+++|||.++-..||+..+.+.|- ...+.+. .+.+-||+.|.+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---GHFGKCFLHFGNR 377 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEeee---cCCcceeEecCCc
Confidence 356999999999999999998887653 3444443 3377899999753
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.17 E-value=0.59 Score=34.98 Aligned_cols=76 Identities=20% Similarity=0.247 Sum_probs=54.7
Q ss_pred CCCeEEEcCCCCCcC--H---HHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCc-eEEEE
Q 024262 5 FSRTIYVGNLPSDIR--E---YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRVE 78 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t--~---~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l~v~ 78 (270)
-.+++.+.+|+..+- . .....+|-+|-+...+.+... .+..-|.|.+++.|..|...+++..|.|+ .++..
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs---frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS---FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh---hceeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 345688888877633 2 233456666655555554432 55677899999999999999999999888 88888
Q ss_pred ecCCC
Q 024262 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
+++..
T Consensus 86 faQ~~ 90 (193)
T KOG4019|consen 86 FAQPG 90 (193)
T ss_pred EccCC
Confidence 88755
No 223
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.05 E-value=2 Score=36.33 Aligned_cols=56 Identities=14% Similarity=0.282 Sum_probs=46.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+--+.|-|.++|.....+||..+|..|+. =-+|.|+.+ ..||..|.....|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd----thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD----THALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec----ceeEEeecchHHHHHHhh
Confidence 45688999999999999999999999973 234555543 479999999999999998
No 224
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=85.68 E-value=0.84 Score=31.97 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=31.4
Q ss_pred eEEEcCCCCC---------cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHH-HHHHHHhcCC
Q 024262 8 TIYVGNLPSD---------IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARD-AEDAIRGRDG 67 (270)
Q Consensus 8 ~i~V~nlp~~---------~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~-a~~A~~~l~~ 67 (270)
++.|-|++.. ++.+.|.+.|..|.++.-..+.......++++|+|..--. -..|+. |+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~-l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR-LEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH-HHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH-HHH
Confidence 4567777554 3567899999999877644444444568999999985443 344555 443
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=82.07 E-value=6.7 Score=25.67 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=41.6
Q ss_pred EEEcCCCCCcCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc
Q 024262 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 9 i~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
-|+--++..++..+|.+.++. || +|..|..........=|||.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 344457788999999988886 56 7777777554444456999999999888865533
No 226
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=80.89 E-value=13 Score=24.32 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=43.5
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHhc
Q 024262 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l 182 (270)
.-|+-.....++..+|++.++. || .|..|..+.-..+ .-|||.+....+|.+...++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3455556789999999999988 56 5677776655544 48999999999998876654
No 227
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=79.92 E-value=9.6 Score=24.48 Aligned_cols=56 Identities=13% Similarity=0.185 Sum_probs=40.5
Q ss_pred eEEEcCCCCCcCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024262 8 TIYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.-|+-.++..++..+|++.++. || +|..|..........=|||.+...+.|...-.
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 3455567889999999988886 55 67777665443334469999998888877544
No 228
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=78.24 E-value=0.27 Score=43.09 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=54.6
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCce
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.+|+|||.||+++++-++|..++..+--+..+.+... .....+++|.|.---....|+-.||++.+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 3689999999999999999999998866666665322 233567899999888888888888887765444
No 229
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=77.55 E-value=16 Score=23.45 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=43.2
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHhc
Q 024262 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l 182 (270)
.-|+-..+..++..+|+..++. |+ .|..|..+.-+.+ .-|||.+..-..|.+...++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 4566667899999999999988 56 5666766555443 48999999998888876654
No 230
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=77.32 E-value=3.1 Score=35.10 Aligned_cols=66 Identities=20% Similarity=0.280 Sum_probs=49.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccc-eEEEEEec-C----CCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKI-P----PRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~~-~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
--+.|.|.+||+..++++|.+-...|-. |....+.. + ....+.|||.|..+++.......++|+.|
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 3467899999999999999888877643 33333321 1 22357899999999999999998998665
No 231
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=76.75 E-value=1.2 Score=41.21 Aligned_cols=7 Identities=14% Similarity=0.259 Sum_probs=3.0
Q ss_pred EEEEEEc
Q 024262 47 YCFVEFE 53 (270)
Q Consensus 47 ~afV~f~ 53 (270)
|+.+...
T Consensus 61 y~~t~~~ 67 (1194)
T KOG4246|consen 61 YGSTSLS 67 (1194)
T ss_pred ccccchh
Confidence 4444443
No 232
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=76.53 E-value=15 Score=22.44 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=33.3
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcc
Q 024262 19 REYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 19 t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
.-.+|-++|.+.| .|..+.....+. +++.-+.+.+.+.|.+++. -+|+.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~-~~G~~ 63 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK-EAGFA 63 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH-HCCCE
Confidence 3478888898776 788887754433 4665666777778888877 34443
No 233
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=76.50 E-value=26 Score=31.85 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=27.2
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 122 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.....+.|.+++. +++....-+++.+.|++..|.+....
T Consensus 59 enDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 59 ENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred cCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 4456788888874 45556666777889988777665543
No 234
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=74.47 E-value=8.1 Score=23.52 Aligned_cols=19 Identities=21% Similarity=0.406 Sum_probs=16.6
Q ss_pred HHHHHHHhhcccceEEEEE
Q 024262 20 EYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 20 ~~~l~~~F~~~G~v~~~~~ 38 (270)
.++|+++|+..|+|.-+++
T Consensus 8 ~~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHHhcCcEEEEEE
Confidence 3689999999999988877
No 235
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=73.80 E-value=12 Score=30.45 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=37.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChh
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPE 173 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~ 173 (270)
..-|+++||+.++.-.||+..+.+.+-+. +.+......+.||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 35699999999999999999998887543 34444444568999998754
No 236
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=72.43 E-value=2.9 Score=33.60 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=51.2
Q ss_pred ceEEEeCCCCC------------CCHHHHHHHHHhcCCeeEEEEeeCC---------CC-----c---------EEEEEe
Q 024262 125 YRVIVRGLPSS------------ASWQDLKDHMRKAGDVCFAEVSRDS---------EG-----T---------YGVVDY 169 (270)
Q Consensus 125 ~~l~V~nl~~~------------~~~~~l~~~f~~~g~v~~~~~~~~~---------~~-----~---------~afv~f 169 (270)
.+|++.+||-. .+++-|...|+.||.|..|.|+.-. .. | -|||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 56777777633 3567899999999999988876321 11 1 245666
Q ss_pred cChhhHHHHHHhcCCccccCccccc----eeeeecC
Q 024262 170 TNPEDMKYAIRKLDDTEFRNPWARG----RITVKRY 201 (270)
Q Consensus 170 ~~~~~a~~a~~~l~g~~~~~~~~~~----~i~v~~~ 201 (270)
........|+..|.|+.+...+++. .++|+++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfd 265 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFD 265 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccc
Confidence 6666777888888888776444444 4455554
No 237
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.07 E-value=5.8 Score=33.13 Aligned_cols=9 Identities=56% Similarity=0.730 Sum_probs=3.9
Q ss_pred CCCCCCCcC
Q 024262 258 RSVSPDKVR 266 (270)
Q Consensus 258 rsrs~~r~r 266 (270)
++|||.+.+
T Consensus 87 ~sRs~sr~r 95 (426)
T KOG2812|consen 87 RSRSPSRDR 95 (426)
T ss_pred cccCCCccc
Confidence 444444433
No 238
>PF14893 PNMA: PNMA
Probab=71.64 E-value=5 Score=33.74 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=33.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhc-ccceEEEEE-----ecCCCCCcEEEEEEcCH
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIEL-----KIPPRPPCYCFVEFENA 55 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~-----~~~~~~~g~afV~f~~~ 55 (270)
+.-+.|.|.+||.+|++++|.+.+.. +-+.-...+ ..+ .....|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~-~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE-ENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh-cccceeeeecccc
Confidence 66788999999999999999988763 222222222 112 2244688888754
No 239
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=71.11 E-value=18 Score=21.05 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=30.5
Q ss_pred HHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHH
Q 024262 21 YEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
.+|.++|.+.| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 56677777766 7877777554445677788888888887775
No 240
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.07 E-value=17 Score=31.02 Aligned_cols=56 Identities=9% Similarity=0.037 Sum_probs=46.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCCCcEEEEEecChhhHHHHHHh
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~~~afv~f~~~~~a~~a~~~ 181 (270)
-...|-|.++|.....+||-..|+.|+.- .+|+++.+. .||..|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 35688999999999999999999999854 346666665 799999999999999874
No 241
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=67.37 E-value=30 Score=22.15 Aligned_cols=62 Identities=11% Similarity=0.174 Sum_probs=42.2
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcc-------cceEEEEEec-CCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKY-------GRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~-------G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.|...+||..+|.++|..+.... ..|..+.-.. ....+.||+.+=.+++.+.++-.. .|+.+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~-aG~p~ 71 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARR-AGLPA 71 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHH-cCCCc
Confidence 46678899989999988776643 2344433322 234477888888999999888773 36544
No 242
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=66.44 E-value=62 Score=30.12 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=46.2
Q ss_pred CcCHHHHHHHhhcccce-----EEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 17 DIREYEVEDLFYKYGRI-----LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 17 ~~t~~~l~~~F~~~G~v-----~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+++.+|..++..-+.| -.|.|. ..|.||+... +.|...+..|++..+.|+.|.|+.+..
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCC
Confidence 48889998888765534 445555 3589999875 457788888999999999999998753
No 243
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=65.52 E-value=20 Score=23.61 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=33.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEc
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
+...-|||+|++..+-+.-...+.+..+.=.-+-+..+....||+|-.+-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 56678999999888776666666655443333333445557899998773
No 244
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=64.94 E-value=15 Score=30.80 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=24.9
Q ss_pred EEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 48 CFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
|||.|.++.+|..|++.+.... +..+.|+.+.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999554433 345566665544
No 245
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=62.38 E-value=4.3 Score=26.80 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=21.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhh
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFY 28 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~ 28 (270)
-..++|.|.|||....+++|++.++
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeEE
Confidence 3478999999999999999987654
No 246
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=62.23 E-value=9.9 Score=24.73 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=11.7
Q ss_pred CCCCHHHHHHHHHhcCC
Q 024262 134 SSASWQDLKDHMRKAGD 150 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~ 150 (270)
...+.+++.+++..|..
T Consensus 60 ~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDA 76 (85)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 45577778877777743
No 247
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.86 E-value=1.5 Score=37.50 Aligned_cols=76 Identities=7% Similarity=-0.137 Sum_probs=55.4
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++..++..||...++++|.-+|..||.|..+.+.. ++...-.+||.-.+ .+|...|..+-...++|..+.|..+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 56678889999999999999999999999888732 34445677776654 344455555556667777777777653
No 248
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=61.06 E-value=21 Score=25.01 Aligned_cols=50 Identities=14% Similarity=0.285 Sum_probs=27.0
Q ss_pred ceEEEeCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCC--cEEEEEecChhhH
Q 024262 125 YRVIVRGLPSSA---------SWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDM 175 (270)
Q Consensus 125 ~~l~V~nl~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~--~~afv~f~~~~~a 175 (270)
..+.|.|++... ..++|.+.|..|.++. +....+..+ +++.|+|...-..
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHH
Confidence 366777876543 4578999999999875 444455443 6999999876433
No 249
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=60.93 E-value=28 Score=21.72 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=41.3
Q ss_pred HHHHHHhhccc-ceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 21 YEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++|.+-|...| +|..|.-+. ++.+....||+.+...+...++. =..+++..|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~---Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK---IKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee---hHhhCCeEEEEecCCCC
Confidence 57788888777 666665533 45667888999887766444433 35678899999876543
No 250
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=60.92 E-value=45 Score=30.14 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=53.9
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHHHHhc----CCeeEEEEeeCC-------------C-------------------C-
Q 024262 121 RHSEYRVIVRGLPSS-ASWQDLKDHMRKA----GDVCFAEVSRDS-------------E-------------------G- 162 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~-~~~~~l~~~f~~~----g~v~~~~~~~~~-------------~-------------------~- 162 (270)
...+..|.|.|+.+. +...+|.-+|..| |.|..|.|.... + .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 356789999999964 6778888888776 467778776331 1 0
Q ss_pred ------------------cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 163 ------------------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 163 ------------------~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.||.|+|.+.+.|......++|.++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 18999999999999999999999987
No 251
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=60.46 E-value=7 Score=30.76 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=29.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~ 38 (270)
-...++|+-|||..+|++.|..+.+++|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 45678999999999999999999999996655443
No 252
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=59.19 E-value=15 Score=27.62 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=36.5
Q ss_pred cCHHHHHHHhhc-ccceEEEEEecC--C--CCCcEEEEEEcCHHHHHHHHHhcCCccccCceE
Q 024262 18 IREYEVEDLFYK-YGRILDIELKIP--P--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 18 ~t~~~l~~~F~~-~G~v~~~~~~~~--~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (270)
.|+++|..+..- -|.+..|.+... + ..+|-.||+|.+.+.|...++ -+...+....|
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e~el 179 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGAETEL 179 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhccchHH
Confidence 444444443321 178999988443 2 457889999999999998877 44444433333
No 253
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=58.48 E-value=24 Score=22.96 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024262 41 PPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.+..+||-|||=.+++++..|+..+.+...
T Consensus 40 ~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 40 PDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp -TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred eCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 345699999999999999999998876543
No 254
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=58.19 E-value=50 Score=28.47 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=29.9
Q ss_pred CCCCCeEEEcCCCCC-cCHHHHHHHhhcc----cceEEEEEec
Q 024262 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKI 40 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~-~t~~~l~~~F~~~----G~v~~~~~~~ 40 (270)
+.++..|-|-||..+ +...+|..+|+.| |+|..|.|..
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyp 185 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYP 185 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEech
Confidence 567888999999886 7888999998865 5777777754
No 255
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=57.94 E-value=28 Score=28.34 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=13.3
Q ss_pred EEEEcCHHHHHHHHHhcCC-ccccCceEEEE
Q 024262 49 FVEFENARDAEDAIRGRDG-YNFDGCRLRVE 78 (270)
Q Consensus 49 fV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~ 78 (270)
+|-|++.--+.-.+..|.. ..++-+.|.|.
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiN 86 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQIN 86 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeee
Confidence 3445554444444444443 33344444443
No 256
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=56.27 E-value=76 Score=23.20 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=40.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHh
Q 024262 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~ 181 (270)
.-|+-.+....+..+|++.++. |+ .|..|..+.-+.+ .-|||.+....+|.....+
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 4566667889999999999987 55 5666766555443 4899999888877665544
No 257
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=55.90 E-value=39 Score=21.16 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=37.0
Q ss_pred HHHHHHHHhcC-CeeEEEEeeCCCCc----EEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 139 QDLKDHMRKAG-DVCFAEVSRDSEGT----YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 139 ~~l~~~f~~~g-~v~~~~~~~~~~~~----~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
++|.+.|..+| ++.++..+...+++ .-+|+.....+... -|+=..++ +..+.|+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg----~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLG----GQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhC----CeeEEEecCcc
Confidence 46888999999 77788887776642 55666654432222 23334444 77888887654
No 258
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=54.86 E-value=52 Score=24.01 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=35.3
Q ss_pred EEcCCCCCcCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHH
Q 024262 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 10 ~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
|+--+...++..+|.+.++. |+ .|..|.........-=|||.+....+|....
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 34446678899999988875 55 6666666443333345999998777765443
No 259
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=52.12 E-value=4.3 Score=34.61 Aligned_cols=10 Identities=60% Similarity=0.610 Sum_probs=4.0
Q ss_pred CCCCCCCCCc
Q 024262 256 RSRSVSPDKV 265 (270)
Q Consensus 256 ~srsrs~~r~ 265 (270)
++|++||.+.
T Consensus 292 rsrsrS~~~R 301 (450)
T KOG3869|consen 292 RSRSRSPLRR 301 (450)
T ss_pred hhcccCcccc
Confidence 3344444333
No 260
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=49.94 E-value=37 Score=22.92 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=31.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCH
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
+...-|||++++..+-+.--..+-+.++.=.-+-+..+....||+|-.+-+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 5567899999887776554444444443322222234445569998887643
No 261
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=49.85 E-value=14 Score=19.78 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=10.3
Q ss_pred CCcCHHHHHHHhhccc
Q 024262 16 SDIREYEVEDLFYKYG 31 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G 31 (270)
.++++++|++.|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3588999999998764
No 262
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=48.58 E-value=21 Score=30.38 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=48.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCC------cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~------~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+.|..||+..++.+|.+....+-. +.+..+.....+ +.|||.|..+++...-...++|..+-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 68899999999999999888877653 334444432111 37999999999999998889887765
No 263
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=48.41 E-value=57 Score=19.33 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=40.7
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCH----HHHHHHHHh
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA----RDAEDAIRG 64 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 64 (270)
|+.|.||.-.--...|.+.+...-.|..+.+-.. .+.+-|.|... ++..++|..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888877778889999988878888888543 46788888744 566666664
No 264
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=47.18 E-value=62 Score=25.00 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=35.2
Q ss_pred cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024262 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+.++..+++..++... +.|+.++-..|-+.+...+.++|..|+..+-
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 45677788887766433 6677777666666777899999999987664
No 265
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=44.74 E-value=63 Score=26.61 Aligned_cols=55 Identities=7% Similarity=0.058 Sum_probs=44.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-----------CcEEEEEecChhhHHHH
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----------GTYGVVDYTNPEDMKYA 178 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----------~~~afv~f~~~~~a~~a 178 (270)
++.|...|+...++--.+...|.+||+|+.|+++.+.. .....+.|-+.+.+..-
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 46788999999999999999999999999999988761 12677888887776543
No 266
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=44.59 E-value=85 Score=28.63 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=32.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeC
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
..+..+|+.+|..++.++.-.++....-.++.+.+++.
T Consensus 299 l~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 299 LDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCCceEecCcccccCCHHHHHHHHHhCcccccceeecc
Confidence 34679999999999999999999988888888888875
No 267
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=44.28 E-value=1.2e+02 Score=21.71 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=49.3
Q ss_pred CCCeEEEcCCCCC---cCHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 5 FSRTIYVGNLPSD---IREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~s~~i~V~nlp~~---~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.-.|.|...... .+...+.+++.+-| .++.+... .+...|.|.++++-.+|.+.|....=++-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3446777766333 56678888888776 45555443 246889999999999999888765545556665555
Q ss_pred C
Q 024262 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 4
No 268
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=44.26 E-value=50 Score=29.67 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=43.2
Q ss_pred EEcCCCCCcCH---HHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceE
Q 024262 10 YVGNLPSDIRE---YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 10 ~V~nlp~~~t~---~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (270)
+||||+.-... ..|..+=.+||+|-.+.+- ..-.|--.+.+.|+.|+. -++..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 46676554332 4455555689999988772 224688889999999999 78899999886
No 269
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=44.22 E-value=14 Score=26.87 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=28.3
Q ss_pred EEEcCCCCC-cCHHHHHHHhhcccceEEEEEecC
Q 024262 9 IYVGNLPSD-IREYEVEDLFYKYGRILDIELKIP 41 (270)
Q Consensus 9 i~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~~~~ 41 (270)
|.|.|||.. .+++-|.++.+.+|++..+.....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 677899998 788889999999999999987543
No 270
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=43.58 E-value=5.1 Score=35.57 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=49.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
++.|++.|+++.++-++|..+|..+.-+..+.+-..... .+.+|.|.---....|..+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 578999999999999999999999876655544333221 27889998777777777777776665
No 271
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=42.82 E-value=35 Score=21.42 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=21.8
Q ss_pred cEEEEEEcCHHHHHHHHHhcCCccccC
Q 024262 46 CYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.+++|.|.+..+|.+|-+.|...-+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 478999999999999998777655533
No 272
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=42.43 E-value=72 Score=18.81 Aligned_cols=47 Identities=13% Similarity=0.144 Sum_probs=27.8
Q ss_pred HHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEEcCHHHHHHHHHhcCCc
Q 024262 21 YEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
.+|-++|.++| .|..+...... .......+...+.+.+.+++. -+|+
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~-~~G~ 62 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ-ERGV 62 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH-HCCc
Confidence 56777777776 66666553332 223445556667777777776 3443
No 273
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=41.46 E-value=1.1e+02 Score=20.68 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=36.9
Q ss_pred CcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 024262 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 17 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
+-++++|..+...=|.|.+|.+....-..=.+.+...+..+++..++.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 345677788877667999998855433344678899999999999997764
No 274
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=41.45 E-value=1.1e+02 Score=20.57 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=30.1
Q ss_pred CCCCcCHHHHHHHhhc-------c-cceEEEEE--------ecCCCCCc-EEEEEEcCHHHHHHHHH
Q 024262 14 LPSDIREYEVEDLFYK-------Y-GRILDIEL--------KIPPRPPC-YCFVEFENARDAEDAIR 63 (270)
Q Consensus 14 lp~~~t~~~l~~~F~~-------~-G~v~~~~~--------~~~~~~~g-~afV~f~~~~~a~~A~~ 63 (270)
|.++++++++..+... . |.|..+.- ...+...| |.++.|.-+.++...++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4566677776655443 3 46655543 11233455 68889987777777765
No 275
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=41.28 E-value=6.5 Score=32.89 Aligned_cols=48 Identities=17% Similarity=-0.010 Sum_probs=37.1
Q ss_pred HHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 024262 20 EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 20 ~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
...|.+++.+.|.|..-.|..+= +.|.+||-+-.++++.++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtF-NmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTF-NMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHh-cCccceEEEEcHHHHHHHHHHHHhc
Confidence 56778888888887765553321 2688999999999999999988864
No 276
>PF15063 TC1: Thyroid cancer protein 1
Probab=40.58 E-value=17 Score=23.02 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEcCCCCCcCHHHHHHHhhcccce
Q 024262 10 YVGNLPSDIREYEVEDLFYKYGRI 33 (270)
Q Consensus 10 ~V~nlp~~~t~~~l~~~F~~~G~v 33 (270)
-+.||=.+++.++|+.||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 456888899999999999998864
No 277
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=39.59 E-value=82 Score=18.64 Aligned_cols=40 Identities=10% Similarity=0.088 Sum_probs=23.5
Q ss_pred CCcCHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEEcCH
Q 024262 16 SDIREYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENA 55 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~ 55 (270)
..-.-.+|.++|.++| .|..+...... .......+.+.+.
T Consensus 9 ~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~ 50 (71)
T cd04879 9 VPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP 50 (71)
T ss_pred CCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC
Confidence 3344677888898886 77777764432 2233444445443
No 278
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=38.79 E-value=1.3e+02 Score=20.62 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=28.2
Q ss_pred HHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHH
Q 024262 21 YEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|..+++.+| |.+-.|..+ ....-||++++.+.+....+|.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 35777888887 455445333 2446799999997776666665
No 279
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=38.46 E-value=72 Score=21.05 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=29.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhc-ccceEEEEEecCCCCCcEEEEEEcC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
+...-|||++++..+-+.--..+-+. .++=.-+-+..+....||+|-.+-+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 55678999999887655433333333 2221112223445567888877654
No 280
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=38.32 E-value=2.2e+02 Score=26.59 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=35.1
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhc---ccceEEEEEecCCCCCcEEE-EEEcCHHHHHHHHHhcC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGRD 66 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~---~G~v~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~~l~ 66 (270)
.++|.|+-||..++.+.|.+.... -|.+. |.-..+....+..| |++.....++..+..|-
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~Ly 283 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEALY 283 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHHH
Confidence 468999999999999888875442 24443 22222222234444 45555555555555443
No 281
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=38.28 E-value=1e+02 Score=19.43 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=30.7
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024262 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 139 ~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 183 (270)
.++.+.+..+| +.-..+.-...+++.|+-+.+.+.++++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677777888 444555554445688888889998888887663
No 282
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.82 E-value=1.2e+02 Score=20.05 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcC-CeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024262 138 WQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 138 ~~~l~~~f~~~g-~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 183 (270)
.+.++++++.+| .+..+++..+.-.....+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 456788888876 6777888877655678888888888777665443
No 283
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=37.52 E-value=1.2e+02 Score=20.02 Aligned_cols=45 Identities=16% Similarity=0.098 Sum_probs=31.3
Q ss_pred HHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc
Q 024262 20 EYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 20 ~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.+.+.++++.+| ++.++++.. |.-=-...+++.+.+.|.++.-.+
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~-G~yD~v~i~eaPD~~~a~~~~l~i 67 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTL-GEYDFVVIVEAPDDETAAAASLAI 67 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEec-CCCCEEEEEEcCCHHHHHHHHHHH
Confidence 355777787765 888888753 333356788999999888765434
No 284
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=37.50 E-value=96 Score=18.82 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=28.9
Q ss_pred CHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEEc--CHHHHHHHHHhcCCcc
Q 024262 19 REYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFE--NARDAEDAIRGRDGYN 69 (270)
Q Consensus 19 t~~~l~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~--~~~~a~~A~~~l~~~~ 69 (270)
.-..|.++|..+| .|..+..... .......+|.+. +.+++.++|. -.|+.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~-~~G~~ 67 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLR-RAGYE 67 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHH-HCCCe
Confidence 4467788888886 6776655433 222333455554 5566666766 34443
No 285
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.15 E-value=51 Score=26.79 Aligned_cols=32 Identities=28% Similarity=0.176 Sum_probs=24.4
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEE
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~ 38 (270)
-...|+|||.+++..-|..++...-.+..+.+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 35789999999999999999987544433333
No 286
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.19 E-value=37 Score=26.52 Aligned_cols=31 Identities=29% Similarity=0.550 Sum_probs=18.3
Q ss_pred HHHHHHhh-cccceEEEEEecCCCCCcEEEEEEcCHH
Q 024262 21 YEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENAR 56 (270)
Q Consensus 21 ~~l~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~ 56 (270)
++|.+.|. .||.- ..+...+.||||+|.+--
T Consensus 89 edL~~EF~~~~~~~-----~~~~~~RPY~FieFD~~I 120 (216)
T KOG0862|consen 89 EDLAQEFDKSYGKN-----IIQPASRPYAFIEFDTFI 120 (216)
T ss_pred HHHHHHHHHhcccc-----cCCccCCCeeEEehhHHH
Confidence 55555554 35431 223345889999998653
No 287
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=34.97 E-value=25 Score=21.51 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=10.7
Q ss_pred CHHHHHHHhhcccceEEE
Q 024262 19 REYEVEDLFYKYGRILDI 36 (270)
Q Consensus 19 t~~~l~~~F~~~G~v~~~ 36 (270)
|--||.+++.+||.+..+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 345899999999976654
No 288
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.77 E-value=31 Score=26.15 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=49.0
Q ss_pred ceEEEeCCCCCCCH-----HHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccc-eeee
Q 024262 125 YRVIVRGLPSSASW-----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-RITV 198 (270)
Q Consensus 125 ~~l~V~nl~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~-~i~v 198 (270)
..+++.+++..+.. .....+|.+|.+.....+.+.. +...|.|.+++.|..|..++++..+. +. .++.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~----~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFN----GKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccC----CCceEEE
Confidence 45677777765533 3456677776665554444432 36788999999999999999999988 44 6655
Q ss_pred ecCC
Q 024262 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
-++.
T Consensus 85 yfaQ 88 (193)
T KOG4019|consen 85 YFAQ 88 (193)
T ss_pred EEcc
Confidence 5544
No 289
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=34.43 E-value=15 Score=22.82 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=18.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhh
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFY 28 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~ 28 (270)
..+++||||+||..+-.++=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3588999999999876655444443
No 290
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=33.98 E-value=1.1e+02 Score=18.45 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=27.7
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEEcCHHHHHHHHHhc
Q 024262 19 REYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 19 t~~~l~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.-.+|.++|..+| .|..+...... ...+...+.+...++..++++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 3567888888887 67777653321 12455667776554555544433
No 291
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=33.93 E-value=1.5e+02 Score=26.78 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=34.8
Q ss_pred HHHHHHHhh----cccceEEEEEecCC--CCCcEEEEEEcCHHHHHHHHHhcC
Q 024262 20 EYEVEDLFY----KYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 20 ~~~l~~~F~----~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
--+|..+|. .+|-|..+.++... ......++.|.+.++|..|+..+-
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 456777776 67889888885432 334677889999999999987653
No 292
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=32.99 E-value=90 Score=24.29 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=36.1
Q ss_pred cCHHHHHHHhhcccc---eEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccc
Q 024262 18 IREYEVEDLFYKYGR---ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~---v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+.+++.++...+|. |...++..-|..++=+...-.++++|..+...|=|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 567888887776663 444444444555653444455899999999888888776
No 293
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=32.85 E-value=46 Score=29.80 Aligned_cols=71 Identities=27% Similarity=0.419 Sum_probs=46.8
Q ss_pred EcCCCCCcCHHHHHHHh-hcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 11 VGNLPSDIREYEVEDLF-YKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 11 V~nlp~~~t~~~l~~~F-~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.++|..+-..++...+ ..++..... ..-.....++++.|++++.+.+|+..++|..+.+..+.+......
T Consensus 30 ~e~~~~~~~q~~~~k~~~~~~~~~~s~--tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 30 IEMIPTFIGQKQLNKVLLKILRDVKSK--TKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred eeccCchhhhhHHHhhhhhhccccccc--CCCCCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 44556665555544433 333222111 111233569999999999999999999999999888888877654
No 294
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=32.17 E-value=1.5e+02 Score=21.62 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=37.5
Q ss_pred CCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024262 131 GLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 131 nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 183 (270)
.|+..+..+-|+++.+.+|.|.... -. -..+.|.+.+...+|++.+.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~-----D~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EY-----DLVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ec-----cEEEEeccHHHHHHHHHHHH
Confidence 4788999999999999999987665 22 24567899999999988653
No 295
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=31.67 E-value=1.6e+02 Score=19.63 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=23.0
Q ss_pred EEEcCCCCCcCHHHHHHHhhc-cc-ceEEEEEe
Q 024262 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELK 39 (270)
Q Consensus 9 i~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~~ 39 (270)
.|+-.++..+|..||++.|+. || +|..|...
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~ 54 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTL 54 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEE
Confidence 445567889999999999986 66 66666653
No 296
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=31.31 E-value=57 Score=27.25 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEecChhhHHHHHHhcCCcc
Q 024262 165 GVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 165 afv~f~~~~~a~~a~~~l~g~~ 186 (270)
|||+|.+..+|..|.+.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999999766554
No 297
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=31.00 E-value=18 Score=22.50 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=27.0
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024262 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
++|.+.|..++....+. +-.+|..|.+.++|..++..+.
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHhh
Confidence 67788787655443332 2258999999999988877553
No 298
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=30.75 E-value=1.2e+02 Score=20.12 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=31.5
Q ss_pred EEEcCCCCCcCHHHHHHHhhc-cc-ceEEEEEec-------CCCC------CcEEEEEEcCHHH
Q 024262 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKI-------PPRP------PCYCFVEFENARD 57 (270)
Q Consensus 9 i~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~~~-------~~~~------~g~afV~f~~~~~ 57 (270)
.++-.++..+|..||++.++. || +|..|.... .+.. .--|+|++...+.
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 344567889999999998885 66 666666522 1111 1258888876643
No 299
>PHA01632 hypothetical protein
Probab=30.37 E-value=55 Score=19.34 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.0
Q ss_pred EEEcCCCCCcCHHHHHHHhhc
Q 024262 9 IYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 9 i~V~nlp~~~t~~~l~~~F~~ 29 (270)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999987763
No 300
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=30.23 E-value=60 Score=26.30 Aligned_cols=29 Identities=31% Similarity=0.571 Sum_probs=23.3
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhh--cccceE
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFY--KYGRIL 34 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~--~~G~v~ 34 (270)
...++|+|||.+++..-|.+++. .||.+.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~ 127 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVR 127 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccc
Confidence 45789999999999999999987 444433
No 301
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=30.17 E-value=58 Score=21.68 Aligned_cols=52 Identities=15% Similarity=0.108 Sum_probs=30.7
Q ss_pred CCCCcCHHHHHHHhhcccce-EEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024262 14 LPSDIREYEVEDLFYKYGRI-LDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 14 lp~~~t~~~l~~~F~~~G~v-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+-+.++...|..-|-.-|.= .-..+.. +-=+.+|.|+|.+.+.+..|...|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRk-D~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRK-DYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhcc-ccceEeEEEECCChHHHHHHHHHHH
Confidence 34456666666655544410 1111111 1115689999999999999987654
No 302
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=29.74 E-value=1.7e+02 Score=20.56 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=29.9
Q ss_pred HHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024262 21 YEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 21 ~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.-|.+.|..++ .+..++-..+.+.+..-|+.-.+.+.|..|++ -.|..+
T Consensus 84 ~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLe-d~gi~~ 133 (142)
T COG4747 84 SRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALE-DAGIKL 133 (142)
T ss_pred HHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHH-HcCCee
Confidence 44556666555 45555544444456666677778888888888 345444
No 303
>PRK11901 hypothetical protein; Reviewed
Probab=29.63 E-value=2.4e+02 Score=23.81 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=37.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc---EE--EEEecChhhHHHHHHhcCCcc
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YG--VVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~---~a--fv~f~~~~~a~~a~~~l~g~~ 186 (270)
....++|-|.. ...++.|..+...++ +..+.+......| |. +-.|.+.++|..|+..|-...
T Consensus 242 p~~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 242 PASHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 34445666554 345777888888776 2334443333222 33 335889999999999886543
No 304
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=29.52 E-value=76 Score=18.61 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.9
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccc
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGR 32 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~ 32 (270)
+.++|.+.....+.++|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 56788888778889999999999885
No 305
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=29.37 E-value=2.3e+02 Score=20.79 Aligned_cols=33 Identities=36% Similarity=0.436 Sum_probs=24.9
Q ss_pred eEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 024262 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
|..+.+. ..-+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 4544442 33589999999988999999987765
No 306
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=29.28 E-value=28 Score=29.85 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=42.5
Q ss_pred CeEEEcCCCCCcCH--------HHHHHHhhc--ccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHH
Q 024262 7 RTIYVGNLPSDIRE--------YEVEDLFYK--YGRILDIELKI---PPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 7 ~~i~V~nlp~~~t~--------~~l~~~F~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+.+|+.+++..... +++...|.. .+++..+.+.. .....|..|++|...+.|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666665444 489999998 56777777743 35668889999999999999875
No 307
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=28.41 E-value=1.5e+02 Score=18.43 Aligned_cols=50 Identities=20% Similarity=0.241 Sum_probs=29.5
Q ss_pred cCHHHHHHHhhccc-ceEEEEEecCC-C-CCcEEEEEEc-CHHHHHHHHHhcCC
Q 024262 18 IREYEVEDLFYKYG-RILDIELKIPP-R-PPCYCFVEFE-NARDAEDAIRGRDG 67 (270)
Q Consensus 18 ~t~~~l~~~F~~~G-~v~~~~~~~~~-~-~~g~afV~f~-~~~~a~~A~~~l~~ 67 (270)
-.-.++.+.|..+| .+..|.-.... . ..=+-||++. +.+...+|+..|..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 34567777888776 45555443322 1 1235678887 55566777777654
No 308
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=27.40 E-value=5.1e+02 Score=24.05 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=59.3
Q ss_pred HHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC--Ccc-----c-cCceEEEEecCCCCCCCCCCC
Q 024262 20 EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYN-----F-DGCRLRVELAHGGSGRGPSSS 91 (270)
Q Consensus 20 ~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~-----~-~g~~l~v~~~~~~~~~~~~~~ 91 (270)
.++|.+.|..-+-|..|.+.. .||-++.+...--+...+..+. +-. + .|++|.|+++.+.
T Consensus 60 A~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN-------- 127 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN-------- 127 (577)
T ss_pred HHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC--------
Confidence 455566665544566777642 2444444443333333333333 222 2 5789999998754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCC
Q 024262 92 DRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS 160 (270)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~ 160 (270)
++.-++|+-+-..+-=+.|-.+++..| .|+....+.|.
T Consensus 128 -------------------------------ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 128 -------------------------------PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred -------------------------------CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 224577888888888888999999988 56556665554
No 309
>PRK15464 cold shock-like protein CspH; Provisional
Probab=26.53 E-value=54 Score=20.56 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=11.8
Q ss_pred cceEEEEEecCCCCCcEEEEEEcC
Q 024262 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.- .+||+||+=.+
T Consensus 7 G~Vk~fn~-----~KGfGFI~~~~ 25 (70)
T PRK15464 7 GIVKTFDR-----KSGKGFIIPSD 25 (70)
T ss_pred EEEEEEEC-----CCCeEEEccCC
Confidence 55554432 28999997554
No 310
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=25.79 E-value=1.7e+02 Score=18.13 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=39.8
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCH----HHHHHHHH
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA----RDAEDAIR 63 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~----~~a~~A~~ 63 (270)
..+++|.++.-.-=...+.+.+.....|..+.+-.. .+.++|.|.+. ++...|+.
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~---~~~~~V~~d~~~~~~~~i~~ai~ 61 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE---KGTATVTFDSNKVDIEAIIEAIE 61 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc---cCeEEEEEcCCcCCHHHHHHHHH
Confidence 457888888777667888888888877888888544 45699999873 44444544
No 311
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=25.63 E-value=67 Score=25.54 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=27.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEE
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAE 155 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~ 155 (270)
.+||+.|+|...|++.|..+.+..|-+..+.
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 6899999999999999999999998655443
No 312
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.57 E-value=1.5e+02 Score=17.44 Aligned_cols=49 Identities=8% Similarity=0.085 Sum_probs=26.4
Q ss_pred CHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEEcC--HHHHHHHHHhcCC
Q 024262 19 REYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFEN--ARDAEDAIRGRDG 67 (270)
Q Consensus 19 t~~~l~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~~--~~~a~~A~~~l~~ 67 (270)
.-.+|-.+|..+| .|..+..... +.......+...+ .+++..+++.+.+
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~ 64 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPN 64 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCC
Confidence 4567888888776 6666665432 2223344455554 3344444444443
No 313
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=25.52 E-value=1.5e+02 Score=17.45 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=29.5
Q ss_pred eEEEcCCCCCcCHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEEcCH-HHHHHHHHhcC
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFENA-RDAEDAIRGRD 66 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~~~-~~a~~A~~~l~ 66 (270)
+|.|..-...-.-.+|..+|..+| .|..+..... +......++++... +....++..|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHh
Confidence 444433333334567888888876 6666665432 22223344444332 44444555444
No 314
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=24.67 E-value=2.1e+02 Score=19.25 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=25.9
Q ss_pred eEEEcCCCCCcCHHHHH---HHhhcccceEEEEE-----ecCCCCCcEEEEEE
Q 024262 8 TIYVGNLPSDIREYEVE---DLFYKYGRILDIEL-----KIPPRPPCYCFVEF 52 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~-----~~~~~~~g~afV~f 52 (270)
..|+.|||.++.+.++. .+|..++.-..|.. .......|++.+-+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 35889999998876654 55656654455554 22334456554433
No 315
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=24.61 E-value=1.9e+02 Score=20.32 Aligned_cols=43 Identities=12% Similarity=0.282 Sum_probs=24.0
Q ss_pred CcCHHHHHHHhhc-ccceEEEEE---ec----CCCCCcEEEEEEcCHHHHHH
Q 024262 17 DIREYEVEDLFYK-YGRILDIEL---KI----PPRPPCYCFVEFENARDAED 60 (270)
Q Consensus 17 ~~t~~~l~~~F~~-~G~v~~~~~---~~----~~~~~g~afV~f~~~~~a~~ 60 (270)
+++.++|++-+.+ |-.-.++.+ .. .|.+.|||.| |.+.|.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 5788999886664 432222212 11 3566777766 556655543
No 316
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=24.53 E-value=1.9e+02 Score=18.23 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=28.9
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024262 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.++++ +..||.|..+.=. ..|+ |-|-+.++++..+..|....+
T Consensus 12 k~~r~-L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 12 KDARQ-LRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred HhHHh-HhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 34443 4569999877543 3354 457789999999888876543
No 317
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=24.48 E-value=2e+02 Score=18.35 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=36.5
Q ss_pred EEEeCCCCCCCHHHHHHHHHh-------cCCeeEEEEeeCCCCc--EEEEEecChhhHHHHHHhcCCccc
Q 024262 127 VIVRGLPSSASWQDLKDHMRK-------AGDVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 127 l~V~nl~~~~~~~~l~~~f~~-------~g~v~~~~~~~~~~~~--~afv~f~~~~~a~~a~~~l~g~~~ 187 (270)
|...++|..++.++|.+...+ +..|.++........+ ||+.+-.+.+...++.++- |...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 456788888999887665543 3456666655554444 5555555666666655543 6544
No 318
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=24.47 E-value=1.9e+02 Score=18.16 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=30.3
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCCCC--CcEEEEEEcC---HHHHHHHHHhcCC
Q 024262 19 REYEVEDLFYKYG-RILDIELKIPPRP--PCYCFVEFEN---ARDAEDAIRGRDG 67 (270)
Q Consensus 19 t~~~l~~~F~~~G-~v~~~~~~~~~~~--~g~afV~f~~---~~~a~~A~~~l~~ 67 (270)
.-.++.++|.++| .|..+........ .-..||++.. .++...+++.|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3577888888886 6677765443222 2245567763 5666777776654
No 319
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=24.12 E-value=90 Score=25.06 Aligned_cols=24 Identities=29% Similarity=0.211 Sum_probs=20.5
Q ss_pred eEEEcCCCCCcCHHHHHHHhhccc
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYG 31 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G 31 (270)
-+.|+|||.+++.+.|.+++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 478999999999999999997443
No 320
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=24.03 E-value=1.9e+02 Score=18.02 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCcCHHHHHHHhhcccc---eEEEEE-ecCCCCCcEEEEEEc-CHHHHHHHHHhcC
Q 024262 16 SDIREYEVEDLFYKYGR---ILDIEL-KIPPRPPCYCFVEFE-NARDAEDAIRGRD 66 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G~---v~~~~~-~~~~~~~g~afV~f~-~~~~a~~A~~~l~ 66 (270)
..+.+..|-++...||- |..-.+ ...+.+-|.-+|++. +.++.++|+..|.
T Consensus 12 ~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~ 67 (76)
T PF09383_consen 12 NSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLR 67 (76)
T ss_dssp CSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 34556667777777763 333333 224566788889995 4455677777665
No 321
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=23.83 E-value=2.3e+02 Score=27.76 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.3
Q ss_pred CCCCcEEEEEEcCHHHHHHHHHhcCCcccc
Q 024262 42 PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
..-+||-|||=..+..+..||+.+-++...
T Consensus 207 D~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 207 DHLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred cccceeEEEEechhHHHHHHHhhhhhheec
Confidence 455899999999999999999998887766
No 322
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=23.57 E-value=71 Score=20.27 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=7.0
Q ss_pred CcEEEEEEc
Q 024262 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 13 KGfGFI~~~ 21 (74)
T PRK09937 13 KGFGFICPE 21 (74)
T ss_pred CCeEEEeeC
Confidence 899999644
No 323
>PRK15463 cold shock-like protein CspF; Provisional
Probab=23.51 E-value=68 Score=20.08 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=11.8
Q ss_pred cceEEEEEecCCCCCcEEEEEEcC
Q 024262 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.- .+||+||+=.+
T Consensus 7 G~Vk~fn~-----~kGfGFI~~~~ 25 (70)
T PRK15463 7 GIVKTFDG-----KSGKGLITPSD 25 (70)
T ss_pred EEEEEEeC-----CCceEEEecCC
Confidence 55554432 28999997543
No 324
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=23.45 E-value=2.3e+02 Score=19.91 Aligned_cols=71 Identities=11% Similarity=0.213 Sum_probs=36.8
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCH--------HHHHHHHHhcCCccccCceEEE
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENA--------RDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~--------~~a~~A~~~l~~~~~~g~~l~v 77 (270)
-.|||+++|...+.+.|.+. .+..|.++.-... ....++-++.+.-. +....+++.++...-.|.+|-|
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlV 83 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKL--GITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLV 83 (138)
T ss_pred CCeEECChhHcCCHHHHHHc--CCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEE
Confidence 35999999977655554442 3445665543211 12344555555421 2223445544444445666666
Q ss_pred Ee
Q 024262 78 EL 79 (270)
Q Consensus 78 ~~ 79 (270)
.=
T Consensus 84 HC 85 (138)
T smart00195 84 HC 85 (138)
T ss_pred EC
Confidence 53
No 325
>PRK14998 cold shock-like protein CspD; Provisional
Probab=23.41 E-value=72 Score=20.16 Aligned_cols=19 Identities=16% Similarity=0.164 Sum_probs=11.7
Q ss_pred cceEEEEEecCCCCCcEEEEEEcC
Q 024262 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.- .+||+||+=.+
T Consensus 4 G~Vkwfn~-----~kGfGFI~~~~ 22 (73)
T PRK14998 4 GTVKWFNN-----AKGFGFICPEG 22 (73)
T ss_pred eEEEEEeC-----CCceEEEecCC
Confidence 55555433 28999997543
No 326
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=22.98 E-value=92 Score=25.86 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.4
Q ss_pred eEEEcCCCCCcCHHHHHHHhhc
Q 024262 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~ 29 (270)
.+.|.|||.+++...|.+++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4789999999999999999865
No 327
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=22.92 E-value=3e+02 Score=19.85 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=26.2
Q ss_pred CcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 45 PCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+-++.+.+.. ...++..|.+..+.|++|.|....
T Consensus 26 ~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 26 SPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred CCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 345555565555 445777789999999999998764
No 328
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=22.90 E-value=1.7e+02 Score=17.06 Aligned_cols=47 Identities=15% Similarity=0.139 Sum_probs=26.6
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEE-cCHHHHHHHHHhc
Q 024262 19 REYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEF-ENARDAEDAIRGR 65 (270)
Q Consensus 19 t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l 65 (270)
.-.+|.++|...| .|..+....++....++|+.+ .+..++..+++.|
T Consensus 13 ~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 13 ILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHH
Confidence 3467778888776 777777754433244555544 3444444444433
No 329
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=22.89 E-value=4.7e+02 Score=22.71 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=45.0
Q ss_pred cCHHHHHHHhhccc---ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC----ccccCceEEEEecCCC
Q 024262 18 IREYEVEDLFYKYG---RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG----YNFDGCRLRVELAHGG 83 (270)
Q Consensus 18 ~t~~~l~~~F~~~G---~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~----~~~~g~~l~v~~~~~~ 83 (270)
.+++++.++-.++| -|...+++.-+..|.=+.---.++++|..+.+.+=| +.+.|.++..-+....
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~ 98 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEA 98 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEec
Confidence 67788888888876 233444444455555444455689999999888888 7788887766555443
No 330
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=22.81 E-value=76 Score=19.64 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=12.3
Q ss_pred cceEEEEEecCCCCCcEEEEEEcC
Q 024262 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.- .+||+||+=.+
T Consensus 4 G~Vk~f~~-----~kGfGFI~~~~ 22 (68)
T TIGR02381 4 GIVKWFNN-----AKGFGFICPEG 22 (68)
T ss_pred eEEEEEeC-----CCCeEEEecCC
Confidence 55555433 28999998665
No 331
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=22.62 E-value=72 Score=19.85 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=7.6
Q ss_pred CcEEEEEEcC
Q 024262 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||+=.+
T Consensus 15 kGyGFI~~~~ 24 (69)
T PRK09507 15 KGFGFITPED 24 (69)
T ss_pred CCcEEEecCC
Confidence 8999997543
No 332
>PRK10943 cold shock-like protein CspC; Provisional
Probab=22.57 E-value=69 Score=19.93 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=7.6
Q ss_pred CcEEEEEEcC
Q 024262 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||+=.+
T Consensus 15 kGfGFI~~~~ 24 (69)
T PRK10943 15 KGFGFITPAD 24 (69)
T ss_pred CCcEEEecCC
Confidence 8999997543
No 333
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=22.52 E-value=4.9e+02 Score=22.16 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=26.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVE 51 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~ 51 (270)
.+..++|+|-+-.+---+.|.+....-|--......++ .+.|.|-|-
T Consensus 79 ~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d-~~TGtCavl 125 (343)
T KOG2854|consen 79 QPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKED-GPTGTCAVL 125 (343)
T ss_pred CCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccC-CCCceEEEE
Confidence 45688999988776555666666665553233333333 334444443
No 334
>PRK02886 hypothetical protein; Provisional
Probab=22.26 E-value=2.3e+02 Score=18.70 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=33.2
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.+-.||+.+| .++++ +..||.|..+.-. ..|+ |-|-|.++|+..++.|....+
T Consensus 6 ~glIVyl~~~------k~~r~-LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 6 QGIIVWLHSL------KQAKQ-LRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred eEEEEEEeec------HhHHH-HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 3445555544 33333 4579999877543 2344 557788999999888876543
No 335
>PRK02302 hypothetical protein; Provisional
Probab=21.96 E-value=2.3e+02 Score=18.79 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=26.6
Q ss_pred hhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024262 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
+.+||.|..+.-. ..|+ |-|-+.++|+..++.|....+
T Consensus 23 LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4579998877543 2354 457788999999888876543
No 336
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=21.85 E-value=21 Score=21.33 Aligned_cols=37 Identities=24% Similarity=0.321 Sum_probs=17.7
Q ss_pred CCcEEEEEEcC-HHHHHHHHHhcCCccccCceEEEEecC
Q 024262 44 PPCYCFVEFEN-ARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 44 ~~g~afV~f~~-~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++|||||...+ .++.--.-..|++.+ +|-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~-~gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAM-DGDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS--TT-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCC-CCCEEEEEEec
Confidence 47999999887 333222333344433 34455554433
No 337
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=21.57 E-value=1.9e+02 Score=18.40 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=17.0
Q ss_pred CcEEEEEEcCHHHHHHHHHhcCCc
Q 024262 45 PCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
.+..+|.|+..++-..|.. |.|.
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g~ 76 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRGC 76 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT-
T ss_pred CCEEEEEEcCCCCHHHHHh-hCCC
Confidence 6789999999999999988 6643
No 338
>PRK10905 cell division protein DamX; Validated
Probab=21.44 E-value=2.8e+02 Score=23.38 Aligned_cols=59 Identities=20% Similarity=0.319 Sum_probs=35.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc--E--EEEEecChhhHHHHHHhcCCc
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT--Y--GVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~--~--afv~f~~~~~a~~a~~~l~g~ 185 (270)
.++|-|. ...+++.|+++..++|--.........++. | -+-.|.+.++|..|+..|-..
T Consensus 247 ~YTLQL~---A~Ss~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 247 HYTLQLS---SSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred ceEEEEE---ecCCHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 3455554 445567888888887643233333333332 2 333588999999999988543
No 339
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=21.35 E-value=3.2e+02 Score=19.66 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=22.4
Q ss_pred CCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 024262 41 PPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
...-+||-||++...++...++..+.|.
T Consensus 34 p~~fpGYvFV~~~~~~~~~~~i~~~~gv 61 (145)
T TIGR00405 34 PESLKGYILVEAETKIDMRNPIIGVPHV 61 (145)
T ss_pred cCCCCcEEEEEEECcHHHHHHHhCCCCE
Confidence 3456899999999888888888877663
No 340
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=21.26 E-value=2.4e+02 Score=18.06 Aligned_cols=63 Identities=17% Similarity=0.265 Sum_probs=44.7
Q ss_pred EcCCCCCcCHHHHHHHh-hcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 11 VGNLPSDIREYEVEDLF-YKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 11 V~nlp~~~t~~~l~~~F-~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
|-.+|..+.-+||.+-. ..||.-.++....+ .-.|-..+++|-.+|++.++. .-.-+.|+|-.
T Consensus 13 Ii~f~RPvkf~dl~~kv~~afGq~mdl~ytn~-----eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 13 IIQFPRPVKFKDLQQKVTTAFGQPMDLHYTNN-----ELLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred EEecCCCccHHHHHHHHHHHhCCeeeEEEecc-----cEEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 33567777878877654 46898888777543 367888999999999997765 44555555543
No 341
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=21.24 E-value=1.9e+02 Score=26.49 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=35.9
Q ss_pred cCHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcC
Q 024262 18 IREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 18 ~t~~~l~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+--+|..+|- .+|-|..+.+... ......+++.|.+.++|..|+..+.
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 34457888872 5889999888533 3445678999999999999887643
No 342
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=21.19 E-value=2.9e+02 Score=24.13 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=34.8
Q ss_pred CcCHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhc
Q 024262 17 DIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 17 ~~t~~~l~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
+..--+|..+|- .+|-|..+.+... .....+.++.|.+.++|..|+..+
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 333446778875 3788888888443 334567788999999999998554
No 343
>PF12007 DUF3501: Protein of unknown function (DUF3501); InterPro: IPR021890 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are about 200 amino acids in length. The structure of protein of unknown function (YP_111841.1) from B. pseudomallei has been solved. ; PDB: 3FJV_B.
Probab=21.02 E-value=1.2e+02 Score=23.43 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=30.4
Q ss_pred CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcc
Q 024262 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 19 t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
.+++|.+....|.+..- ..+.-+..-||+|.++++....+..|.|+.
T Consensus 65 ~~~~I~~Ei~aYnpLiP----~~~~l~ATl~IE~~d~~~r~~~L~~L~Gie 111 (192)
T PF12007_consen 65 DEEGIQEEIDAYNPLIP----DGGNLKATLMIEIPDEDERRRELARLVGIE 111 (192)
T ss_dssp SHHHHHHHHHHHGGGS------SSEEEEEEEE--SSHHHHHHHHHHCTTGG
T ss_pred CHHHHHHHHHHhcccCC----CCCcEEEEEEEEcCCHHHHHHHHHHhcCcc
Confidence 45556666666654321 112335678999999999999999999863
No 344
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=20.90 E-value=99 Score=19.03 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=15.9
Q ss_pred HhhcccceEEEEEecCCCCCcEEEEEEcCH
Q 024262 26 LFYKYGRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 26 ~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
+|+.-|+|.+++ -.||+|.|.-+
T Consensus 31 ife~~GEvl~ik-------gdYa~vr~~~P 53 (67)
T PF11910_consen 31 IFEGPGEVLDIK-------GDYAQVRFRVP 53 (67)
T ss_pred eecCCCeEEEec-------CCEEEEEecCC
Confidence 466667877765 35999999543
No 345
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=20.59 E-value=37 Score=28.56 Aligned_cols=49 Identities=24% Similarity=0.219 Sum_probs=39.6
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCc
Q 024262 137 SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~ 185 (270)
+...+.+.+.+.|.|..-++.+.-+-|.+||..-..+++.++++.|.+.
T Consensus 274 ~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 274 PPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3467888888889887766666656678999999999999999999876
No 346
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=20.58 E-value=1.2e+02 Score=24.82 Aligned_cols=22 Identities=27% Similarity=0.239 Sum_probs=19.1
Q ss_pred eEEEcCCCCCcCHHHHHHHhhc
Q 024262 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~ 29 (270)
.+.|+|+|+.++..-|.+++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999999999888864
No 347
>COG5507 Uncharacterized conserved protein [Function unknown]
Probab=20.58 E-value=1.6e+02 Score=19.80 Aligned_cols=19 Identities=16% Similarity=0.305 Sum_probs=16.3
Q ss_pred EEEEEecChhhHHHHHHhc
Q 024262 164 YGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 164 ~afv~f~~~~~a~~a~~~l 182 (270)
|.+++|.+.+.+..+..++
T Consensus 68 FsW~~Y~skq~rDA~~~km 86 (117)
T COG5507 68 FSWIEYPSKQVRDAANAKM 86 (117)
T ss_pred EEEEEcCchhHHHHHHHHh
Confidence 8999999999888887665
No 348
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=20.46 E-value=2e+02 Score=16.97 Aligned_cols=48 Identities=15% Similarity=0.165 Sum_probs=26.3
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024262 19 REYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 19 t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.-.+|-.+|..++ .|..+.............|.+.+......+++.|.
T Consensus 13 ~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~L~ 61 (72)
T cd04874 13 VLRDLTGVIAEHGGNITYTQQFIEREGKARIYMELEGVGDIEELVEELR 61 (72)
T ss_pred hHHHHHHHHHhCCCCEEEEEEeccCCCeEEEEEEEeccccHHHHHHHHh
Confidence 3567778888775 66666664332223445566665434434444333
No 349
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=20.25 E-value=92 Score=18.84 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=8.8
Q ss_pred CcEEEEEEcCH
Q 024262 45 PCYCFVEFENA 55 (270)
Q Consensus 45 ~g~afV~f~~~ 55 (270)
+||+||+-.+.
T Consensus 12 kgyGFI~~~~~ 22 (66)
T PF00313_consen 12 KGYGFITSDDG 22 (66)
T ss_dssp TTEEEEEETTS
T ss_pred CCceEEEEccc
Confidence 78999998753
No 350
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.24 E-value=3.6e+02 Score=19.84 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=37.2
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhc---ccceEEEEEe-c-----------CCCCCc-EEEEEEcCHHH
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYK---YGRILDIELK-I-----------PPRPPC-YCFVEFENARD 57 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~---~G~v~~~~~~-~-----------~~~~~g-~afV~f~~~~~ 57 (270)
..|++..+..-+++++.+++.+. -+++..|.+- . +...+. |-+|.|++-..
T Consensus 88 ~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~ 154 (161)
T COG5353 88 GKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKE 154 (161)
T ss_pred CeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchh
Confidence 78999999999999999988874 3577777761 1 222334 88899987554
No 351
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=20.21 E-value=1.9e+02 Score=22.22 Aligned_cols=32 Identities=16% Similarity=0.356 Sum_probs=27.4
Q ss_pred EEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 50 VEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+.|.++++|..-++ -.|..|....|.|....+
T Consensus 47 ~I~qs~e~ai~~lE-~e~KlWreteI~I~~g~p 78 (238)
T PF10915_consen 47 IIFQSAEDAIRILE-EEGKLWRETEIKIQSGKP 78 (238)
T ss_pred hhccCHHHHHHHHH-HhcchheeeeEEEecCCc
Confidence 46999999999999 788999999999987654
Done!