Query 024262
Match_columns 270
No_of_seqs 272 out of 2605
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:12:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 9.5E-36 3.3E-40 233.4 16.7 164 3-203 12-180 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 1.7E-34 5.7E-39 224.2 19.1 195 4-200 2-203 (205)
3 3md3_A Nuclear and cytoplasmic 100.0 7.1E-34 2.4E-38 214.2 19.5 159 7-202 1-165 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 7.1E-34 2.4E-38 214.7 19.5 160 5-201 2-168 (168)
5 1fxl_A Paraneoplastic encephal 100.0 1.4E-33 4.8E-38 212.7 20.0 157 5-200 1-166 (167)
6 3pgw_A U1-A; protein-RNA compl 100.0 6.4E-33 2.2E-37 226.6 24.9 196 3-202 6-281 (282)
7 1l3k_A Heterogeneous nuclear r 100.0 1.3E-33 4.3E-38 218.6 19.0 167 4-205 11-184 (196)
8 3nmr_A Cugbp ELAV-like family 100.0 1.5E-33 5.2E-38 214.2 18.4 163 5-202 2-175 (175)
9 2adc_A Polypyrimidine tract-bi 100.0 9.2E-33 3.1E-37 218.8 22.5 193 4-202 32-226 (229)
10 1qm9_A Polypyrimidine tract-bi 100.0 4E-33 1.4E-37 216.2 19.6 191 6-202 3-195 (198)
11 2qfj_A FBP-interacting repress 100.0 7.1E-33 2.4E-37 217.6 20.0 172 5-204 27-205 (216)
12 2g4b_A Splicing factor U2AF 65 100.0 1.4E-32 4.7E-37 208.4 19.4 155 4-201 2-171 (172)
13 2yh0_A Splicing factor U2AF 65 100.0 5.7E-32 2E-36 209.6 23.1 178 4-204 2-194 (198)
14 1fje_B Nucleolin RBD12, protei 100.0 3.8E-33 1.3E-37 212.1 12.2 162 3-203 10-173 (175)
15 2cjk_A Nuclear polyadenylated 100.0 7.5E-33 2.6E-37 208.9 13.3 158 4-203 1-165 (167)
16 3sde_A Paraspeckle component 1 100.0 1E-31 3.5E-36 216.8 17.6 156 4-203 20-178 (261)
17 3smz_A Protein raver-1, ribonu 100.0 5.7E-31 2E-35 215.2 18.0 165 4-204 93-264 (284)
18 3smz_A Protein raver-1, ribonu 100.0 1.6E-30 5.3E-35 212.7 20.1 151 4-203 20-174 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 1.1E-30 3.7E-35 214.5 17.1 167 5-204 116-291 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 2.5E-30 8.5E-35 212.3 18.1 153 4-203 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 2.7E-25 9.3E-30 156.5 9.9 108 6-140 5-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 8.3E-23 2.8E-27 175.0 19.5 82 4-85 100-184 (437)
23 4fxv_A ELAV-like protein 1; RN 99.9 5.4E-23 1.8E-27 140.5 9.5 78 5-82 18-98 (99)
24 3pgw_S U1-70K; protein-RNA com 99.9 7.7E-23 2.6E-27 175.2 11.3 77 122-202 100-180 (437)
25 3lqv_A PRE-mRNA branch site pr 99.9 5.7E-23 1.9E-27 144.9 8.7 106 2-150 4-109 (115)
26 2kn4_A Immunoglobulin G-bindin 99.9 9.1E-22 3.1E-26 146.6 13.9 143 36-204 3-150 (158)
27 2lxi_A RNA-binding protein 10; 99.9 1.8E-22 6.1E-27 135.8 6.9 80 6-85 1-85 (91)
28 1x4a_A Splicing factor, argini 99.9 1.6E-21 5.4E-26 136.1 11.9 81 3-83 19-99 (109)
29 2i2y_A Fusion protein consists 99.9 2E-21 6.9E-26 143.4 13.1 137 42-203 10-147 (150)
30 1sjq_A Polypyrimidine tract-bi 99.9 9.3E-22 3.2E-26 134.1 9.8 80 3-85 13-94 (105)
31 2hvz_A Splicing factor, argini 99.9 7.5E-22 2.6E-26 135.8 8.9 76 7-84 1-76 (101)
32 3r27_A HnRNP L, heterogeneous 99.9 1.6E-21 5.5E-26 131.6 10.3 78 3-83 18-97 (100)
33 2fy1_A RNA-binding motif prote 99.9 4.5E-21 1.5E-25 135.0 12.6 83 1-83 2-86 (116)
34 2wbr_A GW182, gawky, LD47780P; 99.9 1.3E-21 4.3E-26 127.3 8.9 74 5-81 6-79 (89)
35 3s8s_A Histone-lysine N-methyl 99.9 1.6E-21 5.5E-26 135.7 9.8 80 4-83 4-86 (110)
36 2dnz_A Probable RNA-binding pr 99.9 8.2E-21 2.8E-25 129.1 12.7 81 3-83 2-85 (95)
37 1whw_A Hypothetical protein ri 99.9 6.9E-21 2.4E-25 130.4 12.3 83 3-85 5-90 (99)
38 2dgu_A Heterogeneous nuclear r 99.9 1E-20 3.4E-25 130.5 12.7 78 4-86 9-86 (103)
39 1x4d_A Matrin 3; structural ge 99.9 2.2E-21 7.6E-26 132.3 8.9 78 3-83 12-92 (102)
40 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.2E-20 4E-25 130.2 12.7 82 3-84 12-94 (103)
41 2a3j_A U1 small nuclear ribonu 99.9 4.1E-21 1.4E-25 136.6 10.6 81 3-83 26-110 (127)
42 2ad9_A Polypyrimidine tract-bi 99.9 3.9E-21 1.3E-25 134.4 10.2 81 3-86 28-110 (119)
43 2cpf_A RNA binding motif prote 99.9 4.9E-21 1.7E-25 130.9 10.5 82 3-84 2-89 (98)
44 2d9p_A Polyadenylate-binding p 99.9 7.8E-21 2.7E-25 131.1 11.4 83 3-85 12-95 (103)
45 2dgo_A Cytotoxic granule-assoc 99.9 1.5E-20 5.2E-25 132.3 13.1 83 4-86 13-98 (115)
46 2dgs_A DAZ-associated protein 99.9 1.5E-20 5E-25 128.8 12.6 82 3-85 7-91 (99)
47 2x1f_A MRNA 3'-END-processing 99.8 5.4E-21 1.8E-25 130.2 10.3 79 5-83 1-82 (96)
48 2cq1_A PTB-like protein L; RRM 99.8 1.1E-20 3.7E-25 129.0 11.8 79 3-84 12-92 (101)
49 3md1_A Nuclear and cytoplasmic 99.8 5.9E-21 2E-25 126.4 10.1 78 6-83 1-81 (83)
50 1wex_A Hypothetical protein (r 99.8 1E-20 3.6E-25 129.9 11.5 79 3-84 12-92 (104)
51 2dnm_A SRP46 splicing factor; 99.8 5.8E-21 2E-25 131.8 10.3 81 4-84 11-94 (103)
52 2cq3_A RNA-binding protein 9; 99.8 2.2E-20 7.4E-25 128.9 13.0 82 4-85 13-95 (103)
53 2cqd_A RNA-binding region cont 99.8 3.1E-20 1.1E-24 130.9 14.0 80 3-83 14-96 (116)
54 2cq0_A Eukaryotic translation 99.8 5.7E-21 1.9E-25 131.8 9.8 81 4-84 13-96 (103)
55 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.1E-21 2.1E-25 126.9 9.6 79 3-81 4-85 (85)
56 2dgx_A KIAA0430 protein; RRM d 99.8 1E-20 3.5E-25 128.7 10.8 80 4-83 7-90 (96)
57 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.3E-21 2.2E-25 131.4 9.9 82 4-85 10-94 (102)
58 2do0_A HnRNP M, heterogeneous 99.8 2.7E-20 9.2E-25 130.9 13.2 81 3-83 12-94 (114)
59 1x5u_A Splicing factor 3B subu 99.8 1.5E-20 5.3E-25 130.1 11.7 81 4-84 13-96 (105)
60 1x5t_A Splicing factor 3B subu 99.8 8E-21 2.7E-25 129.4 10.0 82 3-84 2-87 (96)
61 1nu4_A U1A RNA binding domain; 99.8 2.5E-21 8.7E-26 132.1 7.5 83 1-83 3-89 (97)
62 2dgv_A HnRNP M, heterogeneous 99.8 1E-20 3.5E-25 127.8 10.3 81 3-83 5-86 (92)
63 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.8E-21 2E-25 127.6 9.0 80 4-83 4-86 (87)
64 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-20 4.3E-25 127.8 10.8 78 4-81 14-94 (94)
65 2lkz_A RNA-binding protein 5; 99.8 1.8E-21 6E-26 131.5 6.4 79 4-82 7-94 (95)
66 1x5s_A Cold-inducible RNA-bind 99.8 1.1E-20 3.6E-25 130.2 10.4 81 4-84 10-93 (102)
67 2do4_A Squamous cell carcinoma 99.8 1.5E-20 5.1E-25 129.0 10.9 80 4-83 15-96 (100)
68 2dnq_A RNA-binding protein 4B; 99.8 2.7E-20 9.2E-25 125.1 11.7 77 3-84 5-81 (90)
69 2cph_A RNA binding motif prote 99.8 2.5E-20 8.7E-25 129.5 11.9 82 3-84 12-98 (107)
70 2cpz_A CUG triplet repeat RNA- 99.8 1.1E-20 3.8E-25 133.0 10.1 82 4-85 23-107 (115)
71 2cqc_A Arginine/serine-rich sp 99.8 1E-20 3.6E-25 128.5 9.3 79 4-82 13-94 (95)
72 1wi8_A EIF-4B, eukaryotic tran 99.8 2.2E-20 7.7E-25 129.0 11.1 80 3-84 12-95 (104)
73 4a8x_A RNA-binding protein wit 99.8 1.6E-20 5.6E-25 125.7 9.9 80 4-83 2-85 (88)
74 1p27_B RNA-binding protein 8A; 99.8 1.2E-20 4.2E-25 130.8 9.4 80 4-83 21-103 (106)
75 2dnh_A Bruno-like 5, RNA bindi 99.8 2.3E-20 8E-25 129.2 10.8 82 4-85 13-99 (105)
76 2ywk_A Putative RNA-binding pr 99.8 1.4E-20 4.7E-25 127.9 9.4 80 3-82 13-94 (95)
77 1x4h_A RNA-binding protein 28; 99.8 3.6E-20 1.2E-24 129.6 11.7 81 4-84 13-102 (111)
78 1x4c_A Splicing factor, argini 99.8 6E-20 2E-24 127.7 12.5 77 4-84 13-94 (108)
79 1why_A Hypothetical protein ri 99.8 3.7E-20 1.3E-24 126.2 11.2 77 4-83 15-93 (97)
80 2dgt_A RNA-binding protein 30; 99.8 4.8E-20 1.6E-24 124.4 11.5 76 3-83 7-82 (92)
81 2div_A TRNA selenocysteine ass 99.8 1.2E-20 4.1E-25 129.2 8.4 82 2-83 5-94 (99)
82 1x4f_A Matrin 3; structural ge 99.8 1.8E-20 6.1E-25 129.5 9.2 78 3-83 22-102 (112)
83 2jrs_A RNA-binding protein 39; 99.8 2E-20 6.9E-25 129.9 9.5 80 4-83 24-106 (108)
84 2dgp_A Bruno-like 4, RNA bindi 99.8 3.3E-20 1.1E-24 128.6 10.6 82 3-84 10-97 (106)
85 2kxn_B Transformer-2 protein h 99.8 2E-20 6.8E-25 134.0 9.6 80 4-83 44-126 (129)
86 1s79_A Lupus LA protein; RRM, 99.8 2.2E-20 7.4E-25 128.3 9.2 78 4-82 9-88 (103)
87 1oo0_B CG8781-PA, drosophila Y 99.8 2.6E-20 8.8E-25 130.1 9.5 80 4-83 24-106 (110)
88 3ns6_A Eukaryotic translation 99.8 1.1E-20 3.6E-25 129.5 7.4 79 4-82 4-92 (100)
89 2khc_A Testis-specific RNP-typ 99.8 2.6E-20 8.9E-25 131.8 9.6 79 3-81 37-118 (118)
90 2dng_A Eukaryotic translation 99.8 5.3E-20 1.8E-24 126.9 10.9 80 3-84 12-94 (103)
91 2dnp_A RNA-binding protein 14; 99.8 6.1E-20 2.1E-24 123.4 10.9 76 3-83 6-81 (90)
92 3p5t_L Cleavage and polyadenyl 99.8 3.7E-21 1.3E-25 129.3 4.8 78 7-84 2-84 (90)
93 3beg_B Splicing factor, argini 99.8 1.1E-20 3.8E-25 132.8 7.4 74 122-202 14-92 (115)
94 3ucg_A Polyadenylate-binding p 99.8 3.3E-20 1.1E-24 124.5 9.3 78 5-83 5-85 (89)
95 2cpi_A CCR4-NOT transcription 99.8 1.7E-20 6E-25 131.0 8.2 81 4-84 13-102 (111)
96 3ulh_A THO complex subunit 4; 99.8 3.3E-20 1.1E-24 128.9 9.5 78 4-81 27-106 (107)
97 1h2v_Z 20 kDa nuclear CAP bind 99.8 5E-20 1.7E-24 136.8 11.0 82 4-85 37-121 (156)
98 2cpe_A RNA-binding protein EWS 99.8 4.4E-20 1.5E-24 129.5 9.9 81 4-84 13-104 (113)
99 2cpj_A Non-POU domain-containi 99.8 5.7E-20 2E-24 125.8 10.2 77 4-83 13-89 (99)
100 2cpx_A Hypothetical protein FL 99.8 6E-20 2E-24 129.3 10.6 81 4-85 23-107 (115)
101 2nlw_A Eukaryotic translation 99.8 4.4E-20 1.5E-24 127.7 9.7 80 4-83 13-100 (105)
102 2krb_A Eukaryotic translation 99.8 1.7E-20 5.8E-25 123.5 7.1 72 6-77 1-80 (81)
103 1x4c_A Splicing factor, argini 99.8 2.5E-19 8.5E-24 124.5 13.4 80 121-203 12-92 (108)
104 2err_A Ataxin-2-binding protei 99.8 3.5E-20 1.2E-24 129.0 9.0 80 4-83 27-107 (109)
105 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-19 3.8E-24 126.6 11.5 78 4-84 23-100 (109)
106 2la6_A RNA-binding protein FUS 99.8 3.8E-20 1.3E-24 126.7 9.0 78 4-81 11-99 (99)
107 2ytc_A PRE-mRNA-splicing facto 99.8 5.5E-20 1.9E-24 122.2 9.5 75 4-81 10-85 (85)
108 3s7r_A Heterogeneous nuclear r 99.8 7.4E-20 2.5E-24 122.2 10.0 77 3-80 8-87 (87)
109 2dis_A Unnamed protein product 99.8 1.5E-19 5.1E-24 126.0 11.9 83 3-85 5-94 (109)
110 2xnq_A Nuclear polyadenylated 99.8 9.8E-20 3.4E-24 123.9 10.6 76 3-83 19-95 (97)
111 2jvr_A Nucleolar protein 3; RN 99.8 3.4E-20 1.1E-24 128.6 8.4 79 4-83 26-105 (111)
112 3ex7_B RNA-binding protein 8A; 99.8 4.5E-20 1.6E-24 132.1 9.3 81 4-84 20-103 (126)
113 2fc9_A NCL protein; structure 99.8 7.2E-20 2.5E-24 125.8 10.0 79 4-83 13-91 (101)
114 2cq2_A Hypothetical protein LO 99.8 5.8E-20 2E-24 127.0 9.3 80 2-84 21-107 (114)
115 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-19 4.6E-24 131.9 11.6 81 4-84 40-123 (139)
116 2dhg_A TRNA selenocysteine ass 99.8 8.9E-20 3.1E-24 126.0 10.0 82 3-84 6-91 (104)
117 2rs2_A Musashi-1, RNA-binding 99.8 1.4E-19 4.9E-24 125.9 11.0 79 4-83 23-104 (109)
118 2jvo_A Nucleolar protein 3; nu 99.8 8.7E-20 3E-24 126.6 9.8 75 4-83 29-103 (108)
119 2dh8_A DAZ-associated protein 99.8 4.8E-20 1.6E-24 127.6 8.4 81 3-84 13-96 (105)
120 2cpd_A Apobec-1 stimulating pr 99.8 2.4E-19 8.1E-24 122.7 11.7 75 4-83 13-89 (99)
121 1x4e_A RNA binding motif, sing 99.8 1.3E-20 4.6E-25 125.2 5.1 79 3-81 2-83 (85)
122 1whx_A Hypothetical protein ri 99.8 6.5E-20 2.2E-24 128.0 8.8 77 4-83 8-84 (111)
123 2kvi_A Nuclear polyadenylated 99.8 6.6E-20 2.2E-24 124.7 8.5 75 4-83 8-83 (96)
124 2diu_A KIAA0430 protein; struc 99.8 2.2E-19 7.5E-24 117.8 10.5 75 4-85 6-86 (96)
125 1fjc_A Nucleolin RBD2, protein 99.8 5.4E-20 1.9E-24 125.2 7.8 78 4-83 14-91 (96)
126 3n9u_C Cleavage and polyadenyl 99.8 7.8E-20 2.7E-24 135.1 9.2 79 5-83 54-137 (156)
127 2kt5_A RNA and export factor-b 99.8 2.1E-19 7E-24 128.2 11.1 81 4-84 33-115 (124)
128 2cqh_A IGF-II mRNA-binding pro 99.8 9.9E-20 3.4E-24 123.1 8.9 78 3-84 5-84 (93)
129 2e5j_A Methenyltetrahydrofolat 99.8 9.8E-20 3.3E-24 124.1 8.8 78 4-83 17-94 (97)
130 1p1t_A Cleavage stimulation fa 99.8 4.1E-20 1.4E-24 127.7 7.0 80 4-83 6-88 (104)
131 2fc8_A NCL protein; structure 99.8 1.5E-19 5.1E-24 124.4 9.6 80 4-83 13-92 (102)
132 2la4_A Nuclear and cytoplasmic 99.8 7.8E-20 2.7E-24 125.6 8.0 76 4-82 25-100 (101)
133 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.9E-20 2E-24 125.9 7.2 78 4-83 17-98 (100)
134 2cqp_A RNA-binding protein 12; 99.8 4E-20 1.4E-24 126.4 6.3 80 4-83 13-95 (98)
135 2ek1_A RNA-binding protein 12; 99.8 3.5E-20 1.2E-24 125.9 5.9 78 4-81 13-93 (95)
136 2cq4_A RNA binding motif prote 99.8 8.1E-20 2.8E-24 128.4 7.9 79 4-83 23-104 (114)
137 2mss_A Protein (musashi1); RNA 99.8 6.3E-20 2.1E-24 118.9 6.7 72 8-80 1-75 (75)
138 3egn_A RNA-binding protein 40; 99.8 7.2E-20 2.4E-24 133.9 7.5 82 3-84 42-131 (143)
139 2dgw_A Probable RNA-binding pr 99.8 2.7E-19 9.2E-24 120.5 9.7 78 4-83 8-87 (91)
140 2m2b_A RNA-binding protein 10; 99.8 1.5E-19 5.1E-24 130.1 8.9 81 3-84 20-109 (131)
141 1x4b_A Heterogeneous nuclear r 99.8 2.2E-19 7.4E-24 126.6 9.5 79 5-84 26-107 (116)
142 2cqg_A TDP-43, TAR DNA-binding 99.8 5.9E-19 2E-23 121.6 11.3 80 3-84 12-94 (103)
143 2jwn_A Embryonic polyadenylate 99.8 2.1E-19 7.3E-24 128.2 9.4 78 5-83 35-115 (124)
144 1wf1_A RNA-binding protein RAL 99.8 2.5E-19 8.7E-24 125.0 9.5 74 5-83 26-100 (110)
145 1wg5_A Heterogeneous nuclear r 99.8 4.9E-19 1.7E-23 122.1 10.7 79 4-83 13-94 (104)
146 1uaw_A Mouse-musashi-1; RNP-ty 99.8 7.5E-20 2.6E-24 119.2 6.2 73 7-80 1-76 (77)
147 2lea_A Serine/arginine-rich sp 99.8 1.1E-19 3.8E-24 131.2 7.6 80 4-83 45-127 (135)
148 2e5g_A U6 snRNA-specific termi 99.8 6.6E-19 2.3E-23 119.2 11.0 77 4-83 6-82 (94)
149 2kn4_A Immunoglobulin G-bindin 99.8 4.3E-19 1.5E-23 132.1 11.0 80 4-83 68-150 (158)
150 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.7E-19 1.3E-23 129.7 10.0 77 4-80 61-140 (140)
151 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.4E-19 8.3E-24 134.2 8.9 81 4-84 70-153 (165)
152 2ki2_A SS-DNA binding protein 99.8 6.1E-20 2.1E-24 123.4 4.8 76 7-83 2-80 (90)
153 3beg_B Splicing factor, argini 99.8 4.8E-19 1.6E-23 124.4 9.5 76 4-83 14-94 (115)
154 2cpy_A RNA-binding protein 12; 99.8 1.9E-19 6.6E-24 126.3 7.4 79 4-83 13-94 (114)
155 1x5o_A RNA binding motif, sing 99.8 5.1E-19 1.8E-23 124.3 9.6 80 4-83 23-112 (114)
156 2db1_A Heterogeneous nuclear r 99.8 1.8E-19 6.3E-24 127.1 7.2 79 4-83 15-98 (118)
157 1x5p_A Negative elongation fac 99.8 1.8E-18 6E-23 117.8 11.9 76 4-84 13-88 (97)
158 1fj7_A Nucleolin RBD1, protein 99.8 7.4E-20 2.5E-24 125.7 5.0 79 4-83 15-95 (101)
159 1wg1_A KIAA1579 protein, homol 99.8 2.9E-19 9.8E-24 119.5 7.6 77 3-83 2-78 (88)
160 2i2y_A Fusion protein consists 99.8 5E-19 1.7E-23 130.5 9.5 78 4-83 71-148 (150)
161 1wez_A HnRNP H', FTP-3, hetero 99.8 4.5E-19 1.6E-23 121.6 8.4 78 4-83 13-92 (102)
162 2e44_A Insulin-like growth fac 99.8 1.2E-18 4.2E-23 118.4 10.1 79 4-83 13-92 (96)
163 1sjr_A Polypyrimidine tract-bi 99.8 2.2E-18 7.5E-23 126.4 11.8 77 7-84 47-125 (164)
164 3zzy_A Polypyrimidine tract-bi 99.8 2.6E-18 9E-23 121.4 11.7 76 7-84 29-107 (130)
165 2hgl_A HNRPF protein, heteroge 99.8 2.8E-19 9.7E-24 128.6 6.8 78 4-82 42-124 (136)
166 1iqt_A AUF1, heterogeneous nuc 99.8 2.1E-19 7.1E-24 116.5 5.5 72 8-80 1-75 (75)
167 2f3j_A RNA and export factor b 99.8 7.2E-19 2.5E-23 132.7 9.2 80 4-83 86-167 (177)
168 2dnn_A RNA-binding protein 12; 99.8 9.9E-19 3.4E-23 121.0 9.0 76 5-82 15-92 (109)
169 2hzc_A Splicing factor U2AF 65 99.8 9.5E-19 3.3E-23 116.7 8.6 73 3-79 3-86 (87)
170 1wel_A RNA-binding protein 12; 99.8 5.3E-19 1.8E-23 126.0 7.5 79 4-83 23-104 (124)
171 3q2s_C Cleavage and polyadenyl 99.8 6.2E-19 2.1E-23 138.6 8.3 78 5-82 67-149 (229)
172 2lmi_A GRSF-1, G-rich sequence 99.8 4E-19 1.4E-23 123.3 5.7 79 3-82 8-91 (107)
173 2e5i_A Heterogeneous nuclear r 99.8 8.5E-18 2.9E-22 118.4 11.8 77 5-84 22-103 (124)
174 2hgm_A HNRPF protein, heteroge 99.8 1.8E-18 6.2E-23 122.4 7.8 77 4-82 40-120 (126)
175 2hgn_A Heterogeneous nuclear r 99.8 5.1E-19 1.7E-23 127.6 5.0 78 4-83 44-123 (139)
176 2dha_A FLJ20171 protein; RRM d 99.8 8.9E-19 3.1E-23 123.7 6.1 79 3-82 20-104 (123)
177 1wf0_A TDP-43, TAR DNA-binding 99.8 1.7E-18 6E-23 115.7 7.2 77 3-83 2-78 (88)
178 3d2w_A TAR DNA-binding protein 99.8 3E-18 1E-22 114.5 8.3 74 4-83 9-84 (89)
179 2lcw_A RNA-binding protein FUS 99.6 8.4E-20 2.9E-24 128.7 0.0 81 3-83 4-95 (116)
180 2lea_A Serine/arginine-rich sp 99.7 4.6E-18 1.6E-22 122.7 8.9 120 46-205 5-128 (135)
181 2jvr_A Nucleolar protein 3; RN 99.7 5.5E-18 1.9E-22 117.4 8.7 81 122-206 26-107 (111)
182 2fy1_A RNA-binding motif prote 99.7 4.6E-17 1.6E-21 114.4 13.4 79 123-205 6-87 (116)
183 1x4a_A Splicing factor, argini 99.7 5.7E-17 2E-21 112.8 13.6 83 119-205 17-100 (109)
184 2xs2_A Deleted in azoospermia- 99.7 2E-18 6.7E-23 118.8 5.9 78 4-83 7-86 (102)
185 2bz2_A Negative elongation fac 99.7 8.5E-18 2.9E-22 118.8 9.1 75 4-83 37-111 (121)
186 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-17 5.1E-22 116.6 10.3 74 4-80 6-85 (114)
187 2cpz_A CUG triplet repeat RNA- 99.7 1E-16 3.5E-21 112.6 14.0 83 119-205 20-106 (115)
188 4fxv_A ELAV-like protein 1; RN 99.7 2E-17 6.8E-22 112.8 10.0 75 124-202 19-97 (99)
189 2pe8_A Splicing factor 45; RRM 99.7 2.1E-17 7.1E-22 113.6 10.1 80 3-82 5-93 (105)
190 3ex7_B RNA-binding protein 8A; 99.7 1.6E-17 5.4E-22 118.7 9.5 81 121-205 19-103 (126)
191 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.9E-17 6.5E-22 123.9 9.9 136 50-204 11-152 (165)
192 3md3_A Nuclear and cytoplasmic 99.7 2.4E-17 8.4E-22 123.3 10.2 78 4-81 85-165 (166)
193 4f02_A Polyadenylate-binding p 99.7 1.7E-17 5.8E-22 129.5 9.5 79 5-83 102-181 (213)
194 2qfj_A FBP-interacting repress 99.7 3.3E-17 1.1E-21 128.1 10.9 80 4-83 123-205 (216)
195 2cqi_A Nucleolysin TIAR; RNA r 99.7 2.3E-16 7.8E-21 108.5 13.5 83 120-206 11-95 (103)
196 2j8a_A Histone-lysine N-methyl 99.7 1E-17 3.5E-22 116.2 6.4 78 6-83 2-96 (136)
197 2d9p_A Polyadenylate-binding p 99.7 9.7E-17 3.3E-21 110.4 11.3 84 119-206 10-95 (103)
198 2dgo_A Cytotoxic granule-assoc 99.7 4E-16 1.4E-20 109.6 14.7 85 119-207 10-98 (115)
199 2cq3_A RNA-binding protein 9; 99.7 2.3E-16 7.9E-21 108.5 13.0 83 119-205 10-94 (103)
200 2do0_A HnRNP M, heterogeneous 99.7 3.3E-16 1.1E-20 109.8 13.8 81 121-205 12-95 (114)
201 1fje_B Nucleolin RBD12, protei 99.7 3.2E-17 1.1E-21 123.9 9.1 78 4-83 97-174 (175)
202 2do4_A Squamous cell carcinoma 99.7 2.2E-16 7.4E-21 108.0 12.4 82 120-205 13-97 (100)
203 2e5j_A Methenyltetrahydrofolat 99.7 1.8E-16 6.1E-21 107.8 11.8 80 120-204 15-94 (97)
204 2wbr_A GW182, gawky, LD47780P; 99.7 1E-16 3.6E-21 104.1 9.7 73 124-202 7-79 (89)
205 2cq0_A Eukaryotic translation 99.7 1.8E-16 6.3E-21 109.0 11.6 83 120-206 11-97 (103)
206 1sjq_A Polypyrimidine tract-bi 99.7 1.2E-16 4.2E-21 108.8 10.5 75 123-203 15-91 (105)
207 2dnm_A SRP46 splicing factor; 99.7 1.8E-16 6.1E-21 109.1 11.5 82 120-205 9-94 (103)
208 2dit_A HIV TAT specific factor 99.7 1.2E-16 4.1E-21 111.6 10.6 79 4-83 13-102 (112)
209 2dnh_A Bruno-like 5, RNA bindi 99.7 3.3E-16 1.1E-20 108.1 12.7 82 122-207 13-100 (105)
210 3s8s_A Histone-lysine N-methyl 99.7 9.6E-17 3.3E-21 111.4 10.0 77 123-203 5-85 (110)
211 3u1l_A PRE-mRNA-splicing facto 99.7 4.2E-17 1.4E-21 127.5 9.0 77 4-83 132-229 (240)
212 2yh0_A Splicing factor U2AF 65 99.7 5.9E-17 2E-21 124.9 9.7 80 4-83 112-194 (198)
213 4f25_A Polyadenylate-binding p 99.7 8.3E-17 2.8E-21 112.9 9.5 76 124-203 5-82 (115)
214 2g4b_A Splicing factor U2AF 65 99.7 4.1E-17 1.4E-21 122.9 8.5 76 5-80 93-171 (172)
215 2e5h_A Zinc finger CCHC-type a 99.7 1.6E-16 5.5E-21 107.4 10.5 79 120-202 12-94 (94)
216 1x5u_A Splicing factor 3B subu 99.7 4.1E-16 1.4E-20 107.6 12.6 81 120-204 11-95 (105)
217 1x5s_A Cold-inducible RNA-bind 99.7 2.9E-16 1E-20 107.8 11.7 80 122-205 10-93 (102)
218 2ywk_A Putative RNA-binding pr 99.7 1.7E-16 5.7E-21 107.6 10.1 80 119-202 11-93 (95)
219 2cph_A RNA binding motif prote 99.7 5E-16 1.7E-20 107.6 12.7 84 119-206 10-99 (107)
220 1x4d_A Matrin 3; structural ge 99.7 8.3E-17 2.8E-21 109.6 8.5 76 122-203 13-91 (102)
221 2cjk_A Nuclear polyadenylated 99.7 4E-17 1.4E-21 122.4 7.6 78 5-83 86-166 (167)
222 2dnz_A Probable RNA-binding pr 99.7 4.8E-16 1.6E-20 105.3 12.0 80 123-206 4-87 (95)
223 1whw_A Hypothetical protein ri 99.7 4.7E-16 1.6E-20 106.2 12.0 80 123-206 7-90 (99)
224 1wi8_A EIF-4B, eukaryotic tran 99.7 2.8E-16 9.6E-21 108.3 10.9 84 118-207 9-97 (104)
225 1x4h_A RNA-binding protein 28; 99.7 6E-16 2E-20 107.9 12.7 83 120-206 11-103 (111)
226 2cqc_A Arginine/serine-rich sp 99.7 3.8E-16 1.3E-20 105.8 11.3 80 119-202 10-93 (95)
227 1l3k_A Heterogeneous nuclear r 99.7 1E-16 3.5E-21 123.4 9.6 80 5-85 103-185 (196)
228 2dgx_A KIAA0430 protein; RRM d 99.7 3.6E-16 1.2E-20 106.0 10.9 79 123-205 8-91 (96)
229 2dnq_A RNA-binding protein 4B; 99.7 6.7E-16 2.3E-20 103.4 12.1 77 122-206 6-82 (90)
230 2dgs_A DAZ-associated protein 99.7 6.4E-16 2.2E-20 105.5 12.0 80 122-206 8-91 (99)
231 1b7f_A Protein (SXL-lethal pro 99.7 1.4E-16 4.7E-21 119.5 9.3 77 4-80 87-168 (168)
232 2kxn_B Transformer-2 protein h 99.7 2.9E-16 9.9E-21 112.3 10.3 81 120-204 42-126 (129)
233 2voo_A Lupus LA protein; RNA-b 99.7 1.8E-16 6.1E-21 121.3 9.8 77 6-83 109-187 (193)
234 3nmr_A Cugbp ELAV-like family 99.7 1.5E-16 5.2E-21 120.0 9.3 77 5-81 94-175 (175)
235 3r27_A HnRNP L, heterogeneous 99.7 2.6E-16 8.8E-21 106.1 9.3 76 122-203 19-96 (100)
236 1wex_A Hypothetical protein (r 99.7 7.1E-16 2.4E-20 105.7 11.6 77 121-203 12-90 (104)
237 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.1E-16 1.1E-20 107.7 9.9 81 122-206 10-94 (102)
238 1x4f_A Matrin 3; structural ge 99.7 2.2E-16 7.5E-21 109.0 9.0 79 119-203 20-101 (112)
239 2hvz_A Splicing factor, argini 99.7 4.2E-16 1.4E-20 106.8 10.4 76 125-205 1-76 (101)
240 2cq1_A PTB-like protein L; RRM 99.7 8.3E-16 2.8E-20 104.7 11.7 78 120-203 11-90 (101)
241 2dgp_A Bruno-like 4, RNA bindi 99.7 8.9E-16 3E-20 106.1 12.0 82 120-205 9-97 (106)
242 2dng_A Eukaryotic translation 99.7 1.1E-15 3.7E-20 105.1 12.3 81 119-205 10-94 (103)
243 1why_A Hypothetical protein ri 99.7 1.1E-15 3.7E-20 103.9 12.1 80 122-205 15-94 (97)
244 2cpj_A Non-POU domain-containi 99.7 9.2E-16 3.2E-20 104.7 11.7 79 121-205 12-90 (99)
245 4a8x_A RNA-binding protein wit 99.7 3E-16 1E-20 104.7 8.9 77 124-204 4-85 (88)
246 2dnp_A RNA-binding protein 14; 99.7 7E-16 2.4E-20 103.3 10.7 77 122-206 7-83 (90)
247 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.7E-16 1.3E-20 103.5 9.3 76 123-202 6-85 (85)
248 3bs9_A Nucleolysin TIA-1 isofo 99.7 4.5E-16 1.5E-20 103.6 9.6 77 123-203 5-85 (87)
249 2dgu_A Heterogeneous nuclear r 99.7 1.5E-15 5.1E-20 104.4 12.5 76 123-206 10-85 (103)
250 2khc_A Testis-specific RNP-typ 99.7 1.1E-15 3.8E-20 107.7 12.1 80 119-202 35-118 (118)
251 2ad9_A Polypyrimidine tract-bi 99.7 5E-16 1.7E-20 108.4 10.0 78 120-203 27-106 (119)
252 2dgt_A RNA-binding protein 30; 99.7 1.2E-15 4E-20 102.7 11.5 77 121-205 7-83 (92)
253 1wf1_A RNA-binding protein RAL 99.7 2.3E-15 7.8E-20 104.8 13.3 74 122-203 25-99 (110)
254 2dhg_A TRNA selenocysteine ass 99.7 1.9E-15 6.6E-20 104.1 12.8 80 122-205 7-91 (104)
255 2lxi_A RNA-binding protein 10; 99.7 1.5E-16 5.2E-21 106.7 7.0 75 125-203 2-82 (91)
256 2cpf_A RNA binding motif prote 99.7 6.7E-16 2.3E-20 105.2 10.4 79 123-205 4-89 (98)
257 1x5t_A Splicing factor 3B subu 99.7 6.2E-16 2.1E-20 104.9 10.1 80 123-206 4-88 (96)
258 2e44_A Insulin-like growth fac 99.7 7.4E-16 2.5E-20 104.5 10.5 78 122-203 13-91 (96)
259 2cpe_A RNA-binding protein EWS 99.7 8.4E-16 2.9E-20 107.5 11.0 83 120-206 11-105 (113)
260 1x4g_A Nucleolysin TIAR; struc 99.7 1.2E-15 4.2E-20 105.9 11.7 79 122-206 23-101 (109)
261 1fxl_A Paraneoplastic encephal 99.7 3.1E-16 1.1E-20 117.4 9.3 76 5-80 87-167 (167)
262 2lkz_A RNA-binding protein 5; 99.7 1.9E-16 6.6E-21 106.6 7.2 82 122-203 7-94 (95)
263 2dh8_A DAZ-associated protein 99.7 1.8E-15 6.2E-20 104.4 12.3 80 120-204 12-95 (105)
264 2ytc_A PRE-mRNA-splicing facto 99.7 9.4E-16 3.2E-20 101.6 10.3 76 121-202 9-85 (85)
265 2cqd_A RNA-binding region cont 99.7 1.9E-15 6.5E-20 106.2 12.4 79 120-203 13-95 (116)
266 2dgv_A HnRNP M, heterogeneous 99.7 1.6E-15 5.5E-20 102.0 11.4 79 122-204 6-86 (92)
267 2cpd_A Apobec-1 stimulating pr 99.7 2.8E-15 9.6E-20 102.3 12.8 77 120-204 11-89 (99)
268 2cpi_A CCR4-NOT transcription 99.7 5.9E-16 2E-20 107.9 9.5 81 121-205 12-102 (111)
269 3pgw_A U1-A; protein-RNA compl 99.7 4.5E-16 1.5E-20 126.7 10.3 76 4-81 205-281 (282)
270 3v4m_A Splicing factor U2AF 65 99.6 4.7E-16 1.6E-20 106.8 8.5 80 3-82 2-96 (105)
271 2cpx_A Hypothetical protein FL 99.6 3.9E-15 1.3E-19 104.4 13.4 81 122-206 23-107 (115)
272 3md1_A Nuclear and cytoplasmic 99.6 1.1E-15 3.9E-20 100.7 10.0 75 125-203 2-80 (83)
273 2jvo_A Nucleolar protein 3; nu 99.6 6.6E-16 2.3E-20 107.0 9.2 78 121-206 28-105 (108)
274 2x1f_A MRNA 3'-END-processing 99.6 8E-16 2.7E-20 104.4 9.4 76 124-203 2-81 (96)
275 1p27_B RNA-binding protein 8A; 99.6 1.5E-15 5.2E-20 105.0 10.7 79 121-203 20-102 (106)
276 2la6_A RNA-binding protein FUS 99.6 2.1E-15 7.1E-20 102.9 11.2 80 119-202 8-99 (99)
277 1sjr_A Polypyrimidine tract-bi 99.6 1.5E-15 5.2E-20 111.3 10.9 79 123-203 45-123 (164)
278 2div_A TRNA selenocysteine ass 99.6 2.2E-15 7.6E-20 102.8 11.1 78 122-203 7-93 (99)
279 2adc_A Polypyrimidine tract-bi 99.6 9.3E-16 3.2E-20 121.0 10.5 78 4-83 149-228 (229)
280 1u6f_A Tcubp1, RNA-binding pro 99.6 4.6E-15 1.6E-19 107.7 13.3 83 120-206 38-124 (139)
281 1qm9_A Polypyrimidine tract-bi 99.6 4E-16 1.4E-20 120.3 8.2 78 4-83 118-197 (198)
282 2cqp_A RNA-binding protein 12; 99.6 7E-16 2.4E-20 105.1 8.4 79 122-204 13-95 (98)
283 3ulh_A THO complex subunit 4; 99.6 1.3E-15 4.5E-20 105.5 9.9 78 121-202 26-106 (107)
284 2jrs_A RNA-binding protein 39; 99.6 2.8E-15 9.6E-20 103.8 11.5 80 120-203 22-105 (108)
285 2hgl_A HNRPF protein, heteroge 99.6 6.1E-16 2.1E-20 111.1 8.0 80 118-202 38-123 (136)
286 2fc9_A NCL protein; structure 99.6 1.1E-15 3.8E-20 104.7 9.0 77 121-204 12-91 (101)
287 3tyt_A Heterogeneous nuclear r 99.6 3.9E-16 1.3E-20 120.7 7.2 77 4-80 121-204 (205)
288 2err_A Ataxin-2-binding protei 99.6 1.3E-15 4.5E-20 105.7 9.1 80 120-203 25-106 (109)
289 2hgn_A Heterogeneous nuclear r 99.6 2.2E-16 7.7E-21 113.8 5.3 78 121-204 43-123 (139)
290 1x5o_A RNA binding motif, sing 99.6 5.5E-15 1.9E-19 103.5 12.3 82 121-202 22-110 (114)
291 2d9o_A DNAJ (HSP40) homolog, s 99.6 5.8E-15 2E-19 100.0 11.8 77 4-84 8-91 (100)
292 1x5p_A Negative elongation fac 99.6 9E-15 3.1E-19 99.3 12.7 79 120-206 11-89 (97)
293 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 6.2E-15 2.1E-19 107.2 12.5 78 120-201 59-140 (140)
294 3p5t_L Cleavage and polyadenyl 99.6 8E-16 2.7E-20 103.0 7.2 76 125-204 2-83 (90)
295 1s79_A Lupus LA protein; RRM, 99.6 2.3E-15 7.9E-20 103.1 9.6 74 123-201 10-86 (103)
296 3ns6_A Eukaryotic translation 99.6 8.9E-16 3.1E-20 104.8 7.5 75 124-202 6-91 (100)
297 1oo0_B CG8781-PA, drosophila Y 99.6 1.9E-15 6.4E-20 105.2 9.2 79 121-203 23-105 (110)
298 1wez_A HnRNP H', FTP-3, hetero 99.6 3.7E-15 1.3E-19 102.0 10.5 77 121-203 12-91 (102)
299 1wg5_A Heterogeneous nuclear r 99.6 2.7E-15 9.3E-20 103.2 9.9 79 120-203 11-93 (104)
300 2kvi_A Nuclear polyadenylated 99.6 1.7E-15 5.9E-20 102.7 8.7 74 122-203 8-82 (96)
301 1x4e_A RNA binding motif, sing 99.6 6.6E-16 2.2E-20 102.3 6.3 75 123-201 4-82 (85)
302 2e5i_A Heterogeneous nuclear r 99.6 1.1E-14 3.9E-19 102.4 12.9 76 124-203 25-101 (124)
303 2a3j_A U1 small nuclear ribonu 99.6 4.3E-15 1.5E-19 105.5 10.9 78 122-203 27-109 (127)
304 3lqv_A PRE-mRNA branch site pr 99.6 3.5E-15 1.2E-19 104.7 10.4 77 122-202 6-83 (115)
305 2db1_A Heterogeneous nuclear r 99.6 1.5E-15 5.2E-20 106.9 8.3 79 119-202 12-96 (118)
306 1h2v_Z 20 kDa nuclear CAP bind 99.6 5.4E-15 1.9E-19 109.5 11.6 78 122-203 37-118 (156)
307 2cq4_A RNA binding motif prote 99.6 2.8E-15 9.5E-20 105.0 9.4 76 122-202 23-102 (114)
308 2kt5_A RNA and export factor-b 99.6 2.2E-14 7.6E-19 101.9 14.1 80 120-203 31-113 (124)
309 2dgw_A Probable RNA-binding pr 99.6 6.3E-15 2.1E-19 98.9 10.6 77 122-204 8-87 (91)
310 1whx_A Hypothetical protein ri 99.6 1.5E-15 5E-20 105.8 7.7 75 123-203 9-83 (111)
311 2xnq_A Nuclear polyadenylated 99.6 4.5E-15 1.5E-19 100.7 9.9 76 120-203 18-94 (97)
312 2m2b_A RNA-binding protein 10; 99.6 5E-15 1.7E-19 106.3 10.7 77 122-203 21-107 (131)
313 2la4_A Nuclear and cytoplasmic 99.6 4.5E-15 1.5E-19 101.6 9.7 75 122-202 25-99 (101)
314 2cqg_A TDP-43, TAR DNA-binding 99.6 2.5E-14 8.4E-19 98.3 13.2 79 120-204 11-93 (103)
315 2cqh_A IGF-II mRNA-binding pro 99.6 5.1E-15 1.7E-19 99.8 9.5 78 123-207 7-86 (93)
316 1x4b_A Heterogeneous nuclear r 99.6 9.5E-15 3.2E-19 102.6 11.1 80 122-206 25-108 (116)
317 2cq2_A Hypothetical protein LO 99.6 2.7E-15 9.3E-20 103.6 8.0 80 122-203 23-105 (114)
318 1wel_A RNA-binding protein 12; 99.6 2.8E-15 9.6E-20 106.6 8.4 78 120-202 21-102 (124)
319 2ek1_A RNA-binding protein 12; 99.6 1.4E-15 4.8E-20 102.9 6.3 76 123-202 14-93 (95)
320 2dnn_A RNA-binding protein 12; 99.6 4.7E-15 1.6E-19 102.4 8.7 75 122-202 14-91 (109)
321 3ucg_A Polyadenylate-binding p 99.6 9.8E-15 3.4E-19 97.5 10.1 75 124-203 6-84 (89)
322 2nlw_A Eukaryotic translation 99.6 7.3E-15 2.5E-19 101.2 9.7 76 123-202 14-98 (105)
323 1p1t_A Cleavage stimulation fa 99.6 4.3E-15 1.5E-19 102.3 8.5 78 123-204 7-88 (104)
324 2e5g_A U6 snRNA-specific termi 99.6 1.7E-14 5.8E-19 97.4 11.3 74 123-203 7-81 (94)
325 2krb_A Eukaryotic translation 99.6 2.9E-15 1E-19 98.2 7.2 70 125-198 2-80 (81)
326 3tht_A Alkylated DNA repair pr 99.6 3.9E-15 1.3E-19 122.6 9.5 77 2-81 14-97 (345)
327 2cpy_A RNA-binding protein 12; 99.6 3.3E-15 1.1E-19 104.6 7.8 77 121-202 12-92 (114)
328 3n9u_C Cleavage and polyadenyl 99.6 8.5E-15 2.9E-19 108.0 10.4 76 123-202 54-135 (156)
329 2diu_A KIAA0430 protein; struc 99.6 1E-14 3.5E-19 95.7 9.5 69 126-204 11-84 (96)
330 2mss_A Protein (musashi1); RNA 99.6 3.5E-15 1.2E-19 96.3 7.1 71 126-201 1-75 (75)
331 3s7r_A Heterogeneous nuclear r 99.6 1.3E-14 4.5E-19 96.4 10.1 75 122-201 9-87 (87)
332 3zzy_A Polypyrimidine tract-bi 99.6 6.1E-15 2.1E-19 104.2 8.6 79 122-203 26-105 (130)
333 1jmt_A Splicing factor U2AF 35 99.6 7.7E-16 2.6E-20 105.6 3.9 69 12-80 21-103 (104)
334 2jwn_A Embryonic polyadenylate 99.6 1.1E-14 3.7E-19 103.6 9.9 76 123-203 35-114 (124)
335 3ue2_A Poly(U)-binding-splicin 99.6 7.9E-15 2.7E-19 102.6 8.5 79 4-82 18-108 (118)
336 2j76_E EIF-4B, EIF4B, eukaryot 99.6 3.6E-15 1.2E-19 101.9 6.6 78 120-203 15-97 (100)
337 2fc8_A NCL protein; structure 99.6 2.4E-14 8.3E-19 98.1 10.9 80 120-206 11-94 (102)
338 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.9E-15 2E-19 95.7 7.3 72 125-201 1-76 (77)
339 2rs2_A Musashi-1, RNA-binding 99.6 1.3E-14 4.5E-19 100.6 9.5 79 122-205 23-105 (109)
340 2ki2_A SS-DNA binding protein 99.6 4.6E-15 1.6E-19 99.3 6.2 74 125-203 2-79 (90)
341 1fjc_A Nucleolin RBD2, protein 99.6 7.5E-15 2.6E-19 99.5 7.2 78 121-203 13-90 (96)
342 1nu4_A U1A RNA binding domain; 99.6 6.5E-15 2.2E-19 100.0 6.9 79 122-204 6-89 (97)
343 2lmi_A GRSF-1, G-rich sequence 99.6 6.8E-15 2.3E-19 101.8 7.0 76 122-202 9-90 (107)
344 2hgm_A HNRPF protein, heteroge 99.6 1.3E-14 4.5E-19 102.5 8.3 77 120-202 38-119 (126)
345 2hzc_A Splicing factor U2AF 65 99.6 2.1E-14 7.3E-19 95.4 8.9 72 122-200 4-86 (87)
346 2dis_A Unnamed protein product 99.6 7E-14 2.4E-18 97.0 11.8 78 123-204 7-92 (109)
347 3s6e_A RNA-binding protein 39; 99.6 1.9E-14 6.4E-19 100.0 8.7 77 4-81 5-91 (114)
348 1fj7_A Nucleolin RBD1, protein 99.5 3E-14 1E-18 97.4 9.6 77 122-204 15-95 (101)
349 3sde_A Paraspeckle component 1 99.5 1.7E-14 5.9E-19 115.9 9.6 80 4-83 94-179 (261)
350 2f3j_A RNA and export factor b 99.5 3.1E-14 1.1E-18 107.3 10.1 78 121-202 85-165 (177)
351 3q2s_C Cleavage and polyadenyl 99.5 2.8E-14 9.5E-19 112.1 9.9 76 123-202 67-148 (229)
352 1iqt_A AUF1, heterogeneous nuc 99.5 1.6E-14 5.4E-19 93.2 6.5 70 126-200 1-74 (75)
353 1wg1_A KIAA1579 protein, homol 99.5 1.2E-14 4E-19 96.9 6.0 73 124-203 5-77 (88)
354 2dha_A FLJ20171 protein; RRM d 99.5 5.7E-15 1.9E-19 104.2 4.6 77 121-202 20-103 (123)
355 3egn_A RNA-binding protein 40; 99.5 3.4E-14 1.2E-18 103.6 8.6 81 122-206 43-132 (143)
356 2bz2_A Negative elongation fac 99.5 5.2E-14 1.8E-18 99.3 9.1 77 121-205 36-112 (121)
357 2lcw_A RNA-binding protein FUS 99.2 2.1E-15 7E-20 106.0 0.0 81 123-207 6-98 (116)
358 2xs2_A Deleted in azoospermia- 99.5 8.2E-14 2.8E-18 95.4 7.3 74 123-202 8-84 (102)
359 3d2w_A TAR DNA-binding protein 99.5 7.9E-14 2.7E-18 92.9 7.0 76 120-202 7-82 (89)
360 1wf0_A TDP-43, TAR DNA-binding 99.5 7.5E-14 2.6E-18 92.9 6.4 75 123-204 4-78 (88)
361 2dit_A HIV TAT specific factor 99.5 8.4E-13 2.9E-17 91.9 11.9 79 121-203 12-101 (112)
362 2voo_A Lupus LA protein; RNA-b 99.5 7.6E-13 2.6E-17 101.1 12.4 74 124-202 109-185 (193)
363 1owx_A Lupus LA protein, SS-B, 99.4 4.7E-13 1.6E-17 92.9 9.1 75 4-81 16-94 (121)
364 2j8a_A Histone-lysine N-methyl 99.4 4E-13 1.4E-17 93.3 8.4 74 125-202 3-94 (136)
365 3u1l_A PRE-mRNA-splicing facto 99.4 2.8E-13 9.5E-18 106.0 8.3 81 123-205 133-230 (240)
366 2pe8_A Splicing factor 45; RRM 99.4 8E-13 2.7E-17 90.6 9.4 77 122-202 6-92 (105)
367 2dnl_A Cytoplasmic polyadenyla 99.4 4.6E-13 1.6E-17 93.6 8.0 64 123-187 7-80 (114)
368 2dnr_A Synaptojanin-1; RRM dom 99.3 4.6E-12 1.6E-16 82.4 7.6 74 4-83 5-86 (91)
369 3v4m_A Splicing factor U2AF 65 99.3 3.4E-12 1.1E-16 87.5 7.3 76 123-202 4-95 (105)
370 3s6e_A RNA-binding protein 39; 99.3 9.2E-12 3.2E-16 86.3 8.3 77 122-202 5-91 (114)
371 3ue2_A Poly(U)-binding-splicin 99.3 5.6E-12 1.9E-16 88.1 7.2 76 123-202 19-107 (118)
372 3tht_A Alkylated DNA repair pr 99.3 9E-12 3.1E-16 102.6 7.4 67 120-188 14-82 (345)
373 1jmt_A Splicing factor U2AF 35 99.2 3.6E-12 1.2E-16 87.2 3.4 69 129-201 20-103 (104)
374 2d9o_A DNAJ (HSP40) homolog, s 99.2 2.2E-10 7.6E-15 77.4 12.1 74 125-205 11-91 (100)
375 1ufw_A Synaptojanin 2; RNP dom 99.2 2.5E-11 8.6E-16 79.2 4.5 72 4-81 13-93 (95)
376 1owx_A Lupus LA protein, SS-B, 99.1 2.9E-10 9.9E-15 78.9 7.8 75 120-200 14-92 (121)
377 3dxb_A Thioredoxin N-terminall 99.0 6.4E-10 2.2E-14 86.9 7.7 77 6-82 124-212 (222)
378 2l9w_A U4/U6 snRNA-associated- 99.0 4E-09 1.4E-13 70.1 8.4 74 4-80 19-97 (117)
379 2dnr_A Synaptojanin-1; RRM dom 99.0 2.6E-09 8.9E-14 69.4 7.3 71 125-204 8-86 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 1.8E-08 6.2E-13 65.8 7.4 70 123-201 14-92 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.7 2.6E-07 8.7E-12 61.1 10.5 74 4-83 6-84 (104)
382 3dxb_A Thioredoxin N-terminall 98.5 1.4E-07 4.7E-12 73.6 6.9 63 136-202 141-211 (222)
383 1wey_A Calcipressin 1; structu 98.5 1.6E-06 5.6E-11 57.5 10.6 77 4-83 3-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.5 9.2E-07 3.1E-11 58.9 8.8 72 123-200 20-96 (117)
385 1uw4_A UPF3X; nonsense mediate 98.1 1.2E-05 4.2E-10 52.5 7.3 66 7-72 2-72 (91)
386 1wwh_A Nucleoporin 35, nucleop 98.1 4E-05 1.4E-09 52.4 9.4 72 5-81 23-95 (119)
387 1whv_A Poly(A)-specific ribonu 98.0 1.2E-05 4E-10 52.5 5.6 54 6-65 16-69 (100)
388 3ctr_A Poly(A)-specific ribonu 98.0 1.3E-05 4.5E-10 52.4 5.8 55 6-66 6-60 (101)
389 1wey_A Calcipressin 1; structu 97.8 9.2E-05 3.2E-09 49.1 7.8 72 125-202 6-82 (104)
390 2dhx_A Poly (ADP-ribose) polym 97.6 0.00031 1.1E-08 46.4 7.8 54 124-181 8-66 (104)
391 1whv_A Poly(A)-specific ribonu 97.6 0.00046 1.6E-08 45.0 8.2 54 125-183 17-70 (100)
392 1uw4_A UPF3X; nonsense mediate 97.5 0.0006 2.1E-08 44.4 8.1 64 125-188 2-71 (91)
393 2l08_A Regulator of nonsense t 97.5 0.00015 5.2E-09 47.6 4.5 68 5-72 8-80 (97)
394 3p3d_A Nucleoporin 53; structu 97.3 0.00044 1.5E-08 47.9 5.9 75 5-81 6-97 (132)
395 3pq1_A Poly(A) RNA polymerase; 97.3 0.00012 4E-09 62.5 3.1 55 6-63 53-107 (464)
396 3ctr_A Poly(A)-specific ribonu 97.2 0.00088 3E-08 43.8 5.5 54 125-183 7-60 (101)
397 1wwh_A Nucleoporin 35, nucleop 97.2 0.0025 8.6E-08 43.5 7.9 63 122-188 22-84 (119)
398 2l08_A Regulator of nonsense t 96.5 0.0035 1.2E-07 41.1 4.5 65 125-189 10-80 (97)
399 3pq1_A Poly(A) RNA polymerase; 95.6 0.0087 3E-07 51.1 3.9 56 124-181 53-108 (464)
400 3p3d_A Nucleoporin 53; structu 94.0 0.091 3.1E-06 36.4 4.9 62 125-188 8-87 (132)
401 3d45_A Poly(A)-specific ribonu 93.7 0.16 5.4E-06 44.2 7.0 55 6-66 440-494 (507)
402 2g0c_A ATP-dependent RNA helic 92.7 0.55 1.9E-05 29.0 6.7 68 8-81 2-75 (76)
403 3d45_A Poly(A)-specific ribonu 89.2 1.2 4E-05 38.7 7.6 55 125-184 441-495 (507)
404 4eyt_A Telomerase associated p 88.4 3.3 0.00011 26.2 8.0 69 4-79 10-78 (129)
405 4eyt_A Telomerase associated p 85.5 5.1 0.00018 25.4 7.5 56 124-183 12-67 (129)
406 4e8u_A Putative uncharacterize 75.0 4.4 0.00015 29.4 4.5 56 8-63 14-81 (172)
407 3ts2_A Protein LIN-28 homolog 67.7 1.2 3.9E-05 31.8 0.1 28 21-53 2-29 (148)
408 3j21_T 50S ribosomal protein L 56.7 34 0.0012 21.6 5.5 54 10-63 26-81 (86)
409 3fry_A Probable copper-exporti 51.2 35 0.0012 20.0 5.7 56 6-65 6-61 (73)
410 3j21_T 50S ribosomal protein L 50.3 45 0.0015 21.0 7.3 57 126-182 24-83 (86)
411 3lpe_A Putative transcription 47.7 51 0.0018 20.9 6.3 34 33-68 40-73 (92)
412 2e5p_A Protein PHF1, PHD finge 47.2 12 0.0004 22.2 2.0 20 31-55 28-47 (68)
413 4e8u_A Putative uncharacterize 46.7 53 0.0018 23.8 5.8 49 125-174 13-74 (172)
414 4a17_R RPL23A, 60S ribosomal p 44.3 81 0.0028 22.2 6.5 57 126-182 88-147 (150)
415 2eqj_A Metal-response element- 43.9 14 0.00048 22.0 2.0 11 45-55 41-51 (66)
416 3h7h_B Transcription elongatio 42.8 30 0.001 22.8 3.8 35 33-69 41-75 (106)
417 3uzu_A Ribosomal RNA small sub 42.4 16 0.00054 28.8 2.8 32 7-38 115-146 (279)
418 2m0o_A PHD finger protein 1; t 42.3 14 0.00048 22.6 1.9 20 31-55 45-64 (79)
419 3u5e_X 60S ribosomal protein L 41.1 89 0.003 21.8 6.7 56 126-181 80-138 (142)
420 3iz5_X 60S ribosomal protein L 39.6 98 0.0034 21.8 6.2 56 126-181 90-148 (152)
421 3fut_A Dimethyladenosine trans 38.2 26 0.00088 27.5 3.4 31 7-38 111-141 (271)
422 3swz_A Steroid 17-alpha-hydrox 37.9 53 0.0018 27.7 5.7 59 9-74 17-79 (494)
423 1vq8_S 50S ribosomal protein L 37.8 74 0.0025 19.9 6.3 55 126-180 23-80 (85)
424 2yko_A LINE-1 ORF1P; RNA-bindi 37.7 47 0.0016 25.3 4.5 78 6-83 52-152 (233)
425 3dxs_X Copper-transporting ATP 37.3 60 0.0021 18.7 5.7 57 6-65 3-63 (74)
426 3u5e_X 60S ribosomal protein L 35.1 81 0.0028 22.0 5.0 52 11-62 83-136 (142)
427 1qyr_A KSGA, high level kasuga 34.6 37 0.0013 26.2 3.7 32 7-38 91-122 (252)
428 3tqs_A Ribosomal RNA small sub 34.4 18 0.00061 28.1 1.9 31 8-38 98-128 (255)
429 4a17_R RPL23A, 60S ribosomal p 34.3 82 0.0028 22.2 5.0 51 13-63 93-145 (150)
430 2w7a_A LINE-1 ORF1P; RNA-bindi 34.3 57 0.0019 21.2 4.0 74 6-79 3-99 (100)
431 3fjv_A Uncharacterized novel p 33.8 37 0.0013 25.1 3.3 48 18-69 65-112 (194)
432 2zkr_s 60S ribosomal protein L 33.3 90 0.0031 22.1 5.1 54 10-63 96-151 (156)
433 2cs4_A Protein C12ORF2; GTP bi 33.3 26 0.00088 22.6 2.1 22 11-32 21-43 (95)
434 2g9o_A Copper-transporting ATP 32.2 88 0.003 19.1 5.5 58 5-65 3-64 (90)
435 4bby_A Alkyldihydroxyacetoneph 32.0 43 0.0015 30.0 4.2 53 13-65 350-408 (658)
436 4hcz_A PHD finger protein 1; p 31.8 29 0.001 19.9 2.0 20 31-55 22-41 (58)
437 3iz5_X 60S ribosomal protein L 31.7 72 0.0025 22.5 4.4 51 13-63 95-147 (152)
438 1ytr_A Bacteriocin plantaricin 31.6 26 0.0009 15.7 1.4 13 19-31 13-25 (26)
439 4a4j_A Pacszia, cation-transpo 31.4 74 0.0025 17.9 5.3 55 7-64 4-61 (69)
440 2exu_A Transcription initiatio 29.6 53 0.0018 24.4 3.7 30 42-71 146-175 (200)
441 3ftd_A Dimethyladenosine trans 28.8 38 0.0013 26.1 2.9 30 7-36 96-125 (249)
442 1wvf_A 4-cresol dehydrogenase 27.6 42 0.0014 29.1 3.3 41 22-62 217-261 (520)
443 2zkr_s 60S ribosomal protein L 27.4 1.7E+02 0.0057 20.8 6.9 56 126-181 94-152 (156)
444 2npt_B Mitogen-activated prote 27.2 1.1E+02 0.0038 19.6 4.2 49 13-66 35-84 (100)
445 2od0_A Hypothetical protein VP 25.9 65 0.0022 20.9 3.3 22 18-39 4-25 (105)
446 2jrh_A Mitogen-activated prote 25.7 1E+02 0.0035 19.4 3.8 64 13-82 19-83 (94)
447 1i4w_A Mitochondrial replicati 25.1 57 0.0019 26.7 3.4 22 8-29 144-165 (353)
448 1x8d_A Hypothetical protein YI 24.7 1.3E+02 0.0046 19.5 4.6 32 22-54 28-60 (104)
449 2okq_A Hypothetical protein YB 24.7 1.4E+02 0.0047 20.7 4.7 41 23-63 50-108 (141)
450 2kcm_A Cold shock domain famil 24.0 36 0.0012 20.7 1.6 10 45-54 12-21 (74)
451 2nn4_A Hypothetical protein YQ 23.2 26 0.0009 21.2 0.8 18 19-36 4-21 (72)
452 1ik9_C DNA ligase IV; DNA END 23.2 53 0.0018 16.9 1.9 15 16-30 20-34 (37)
453 1yjr_A Copper-transporting ATP 22.9 1.1E+02 0.0038 17.2 7.9 60 1-64 1-64 (75)
454 2gu3_A YPMB protein; APC1927, 22.7 87 0.003 21.6 3.5 44 11-54 68-127 (136)
455 2c60_A Human mitogen-activated 22.7 1E+02 0.0035 20.0 3.5 60 13-78 46-106 (111)
456 3p8b_B Transcription antitermi 22.5 74 0.0025 22.2 3.2 34 33-68 33-66 (152)
457 2e5q_A PHD finger protein 19; 22.4 88 0.003 18.2 2.8 13 43-55 33-45 (63)
458 3cam_A Cold-shock domain famil 22.4 40 0.0014 19.9 1.6 9 45-53 13-21 (67)
459 1c9o_A CSPB, cold-shock protei 22.3 41 0.0014 19.8 1.6 9 45-53 13-21 (66)
460 3ced_A Methionine import ATP-b 21.7 1.4E+02 0.0047 19.1 4.2 59 8-66 22-86 (98)
461 2cu1_A Mitogen-activated prote 21.7 1.1E+02 0.0036 19.9 3.4 54 128-185 20-74 (103)
462 3a0j_A Cold shock protein; OB- 21.5 43 0.0015 20.2 1.6 9 45-53 13-21 (73)
463 3pm0_A Cypib1, cytochrome P450 21.1 1.5E+02 0.0052 24.8 5.6 48 10-63 19-68 (507)
464 2k5n_A Putative cold-shock pro 21.1 56 0.0019 19.8 2.0 10 45-54 14-23 (74)
465 2uuu_A Alkyldihydroxyacetoneph 20.4 68 0.0023 28.3 3.2 53 14-66 281-339 (584)
466 1g6p_A Cold shock protein TMCS 20.4 47 0.0016 19.5 1.6 10 45-54 12-21 (66)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=9.5e-36 Score=233.38 Aligned_cols=164 Identities=23% Similarity=0.372 Sum_probs=144.3
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..|+++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.++++|.+||..+|+..+.|+.|.|.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 36789999999999999999999999999999999965 467899999999999999999999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeC
Q 024262 80 AHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
+..... .......+|||+|||..+++++|.++|+.||.|..+.++.+
T Consensus 92 ~~~~~~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d 138 (213)
T 4f02_A 92 SQRDPS---------------------------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCD 138 (213)
T ss_dssp CCCCTH---------------------------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE
T ss_pred cccccc---------------------------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeecc
Confidence 765411 11112368999999999999999999999999999999877
Q ss_pred CCC--cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 160 SEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 160 ~~~--~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..+ |||||+|.+.++|.+|++.|||..|. |+.|.|..+..
T Consensus 139 ~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~----g~~i~V~~a~~ 180 (213)
T 4f02_A 139 ENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRFKS 180 (213)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEcCC
Confidence 543 69999999999999999999999998 99999998863
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=1.7e-34 Score=224.15 Aligned_cols=195 Identities=14% Similarity=0.115 Sum_probs=144.2
Q ss_pred CCCCeEEEcCCC-CCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLP-SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp-~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
-++++|||+||| ..+++++|+++|++||.|..|.++.+ .+|||||+|.++++|..||+.|||..|.|++|.|.++..
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999764 379999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCC-CCC-CCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCe--eEEEEee
Q 024262 83 GSGRGPSSSDRRG-GYG-GGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV--CFAEVSR 158 (270)
Q Consensus 83 ~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v--~~~~~~~ 158 (270)
............. ... ....+...................+..+|||.|||..+++++|+++|+.||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 4321100000000 000 00000000000000000001122456789999999999999999999999999 8898887
Q ss_pred CCC--CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 159 DSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 159 ~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+.. .|+|||+|.+.++|.+|+..|||..+.+......+.|+.
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 642 379999999999999999999999999666666666654
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.1e-34 Score=214.16 Aligned_cols=159 Identities=21% Similarity=0.370 Sum_probs=142.3
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++|||+|||.++|+++|+++|+.||+|.+|.+..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999643 5678999999999999999998899999999999999987542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--
Q 024262 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-- 162 (270)
. ....+..+|||+|||..+++++|.++|+.||.|..+.++.+..+
T Consensus 81 ~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 81 Q---------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp C---------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred C---------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 1 11224579999999999999999999999999999999887543
Q ss_pred --cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 --~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|+|||+|.+.++|.+|+..|||..+. |+.|.|.+++
T Consensus 128 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~ 165 (166)
T 3md3_A 128 SRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINWAA 165 (166)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEESC
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEEEecC
Confidence 59999999999999999999999998 9999999875
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=7.1e-34 Score=214.66 Aligned_cols=160 Identities=23% Similarity=0.327 Sum_probs=141.6
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||+++++++|+++|+.||+|..+.++. ++.++|||||+|.++++|.+|+..||+..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 579999999999999999999999999999999854 56688999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024262 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.... .....+|+|.|||..+++++|+++|+.||.|..+.++.+..
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 5421 12347999999999999999999999999999999988763
Q ss_pred C----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 162 ~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
. |+|||+|.+.++|.+|+..|||..+.+ .++.|.|.++
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEG--GSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT--CSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecC--CCeEEEEEeC
Confidence 3 699999999999999999999999871 1388877653
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.4e-33 Score=212.73 Aligned_cols=157 Identities=23% Similarity=0.347 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||+.+++++|+++|+.||.|..+.+.. ++.++|||||+|.++++|..|+..||+..|.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 478999999999999999999999999999999955 46778999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024262 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
+... .....+|+|+|||..+++++|+++|+.||.|..+.++.+..
T Consensus 81 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 81 PSSA-----------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp CCCG-----------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 5411 12346899999999999999999999999999999988763
Q ss_pred C----cEEEEEecChhhHHHHHHhcCCccccCccccce--eeeec
Q 024262 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR--ITVKR 200 (270)
Q Consensus 162 ~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~--i~v~~ 200 (270)
+ |+|||+|.+.++|.+|++.|||..+. |+. |.|.+
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~~~i~v~~ 166 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS----GATEPITVKF 166 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCT----TCSSCCEEEE
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccC----CCccceEEEe
Confidence 3 69999999999999999999999998 644 66554
No 6
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=6.4e-33 Score=226.62 Aligned_cols=196 Identities=19% Similarity=0.257 Sum_probs=148.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..++++|||+|||.++++++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4889999999999999999966 899999999999998888999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCC----C-----------------CCCC-CCCC-------CC-------------------C-----
Q 024262 79 LAHGGSGRGPSSSDR----R-----------------GGYG-GGGA-------GG-------------------A----- 105 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~----~-----------------~~~~-~~~~-------~~-------------------~----- 105 (270)
++............. . .... .... +. .
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 997653210000000 0 0000 0000 00 0
Q ss_pred -CCCCCCCCC--C--------------------CCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 024262 106 -GGAGAGAGA--G--------------------RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 106 -~~~~~~~~~--~--------------------~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
++...+.+. . .......+..+|||+|||..+++++|+++|+.||.|..+.++.+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 000000000 0 001122356789999999999999999999999999999998765 3
Q ss_pred cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 ~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|||||+|.+.++|.+|+..|||..+.. ++.|.|.+++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQ---NNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCC---CCEEEEEEec
Confidence 699999999999999999999988873 7899998875
No 7
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.3e-33 Score=218.65 Aligned_cols=167 Identities=13% Similarity=0.246 Sum_probs=140.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+++|+++|+++|+.||.|.+|.|+. ++.++|||||+|.++++|.+||. +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 5689999999999999999999999999999999965 46678999999999999999999 5999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
........ ........+|||+|||..+++++|+++|+.||.|..+.++.+.
T Consensus 90 ~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 90 VSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred cCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 75522110 1112334799999999999999999999999999999999876
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCCC
Q 024262 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+ |||||+|.+.++|.+|+.. ++..+. |+.|.|..+....
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~----G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN----GHNCEVRKALSKQ 184 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEET----TEECEEEECC---
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEEC----CEEEEEEecCChh
Confidence 43 6999999999999999986 788888 9999999886433
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.5e-33 Score=214.23 Aligned_cols=163 Identities=17% Similarity=0.291 Sum_probs=140.1
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---C--CCCcEEEEEEcCHHHHHHHHHhcCCcccc---CceEE
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---P--RPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLR 76 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~ 76 (270)
++++|||+|||+++|+++|+++|++||+|..|.+..+ + .++|||||+|.++++|.+|+..||+..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 6799999999999999999999999999999999653 2 57899999999999999999999998876 67888
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Q 024262 77 VELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (270)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~ 156 (270)
+.++..... ......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 82 ~~~~~~~~~----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp EEECGGGCC----------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred Ecccccccc----------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 887764411 1224579999999999999999999999999999999
Q ss_pred eeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 157 SRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 157 ~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+.+..+ |||||+|.+.++|.+|++.|||..+.. ..++.|.|.+++
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-GCSSPMVVKFAD 175 (175)
T ss_dssp EECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT-TCSSCCEEEECC
T ss_pred EECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC-CCCCCeEEEecC
Confidence 888653 599999999999999999999988762 114888887763
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=9.2e-33 Score=218.77 Aligned_cols=193 Identities=16% Similarity=0.172 Sum_probs=147.0
Q ss_pred CCCCeEEEcCCCC-CcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. ++++++|+++|+.||.|..|.+..+. +|||||+|.++++|.+|+..||+..|.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5789999999999 99999999999999999999997764 79999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCC
Q 024262 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSE 161 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~ 161 (270)
........................................+..+|||.|||..+++++|+++|+.|| .|..+.++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~- 188 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD- 188 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-
Confidence 5322211111000000000000000000001111112234568999999999999999999999999 99999986543
Q ss_pred CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 162 ~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.|+|||+|.+.++|.+|+..|+|..+. .++.|.|.+++
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~---~g~~l~v~~a~ 226 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSK 226 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSS---SSCBCEEEECS
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccC---CCCeEEEEEec
Confidence 469999999999999999999999886 27888888875
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=4e-33 Score=216.19 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=146.1
Q ss_pred CCeEEEcCCCC-CcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 6 SRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 s~~i~V~nlp~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+++|||+|||+ .+++++|+++|+.||.|..|.+..+. +|||||+|.++++|.+|+..|||..|.|+.|.|.++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 79999999999 99999999999999999999997654 7899999999999999999999999999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCc
Q 024262 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT 163 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~ 163 (270)
...+..................................+..+|||+|||..+++++|+++|+.|| .|..+.++.+. .|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-Cc
Confidence 32221111100000000000000000011111122234578999999999999999999999999 99999987644 47
Q ss_pred EEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 164 ~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+|||+|.+.++|.+|+..|||..+. .++.|.|.+++
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~v~~a~ 195 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSK 195 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCS---SCCSCCEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccC---CCCeEEEEeec
Confidence 9999999999999999999999886 27888888764
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=7.1e-33 Score=217.64 Aligned_cols=172 Identities=18% Similarity=0.303 Sum_probs=144.7
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.++++|.+|+..||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 568999999999999999999999999999999954 56789999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024262 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
......... ...........+|||.|||..+++++|+++|+.||.|..+.++.+..
T Consensus 107 ~~~~~~~~~------------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 107 NIGQAQPII------------------------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp CCGGGHHHH------------------------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT
T ss_pred Cccccchhh------------------------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 441100000 00001123457999999999999999999999999999999998854
Q ss_pred C----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCC
Q 024262 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 162 ~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
+ |||||+|.+.++|.+|+..|||..+. ++.|.|.++...
T Consensus 163 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~i~V~~a~~~ 205 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG----GQYLRVGKAVTP 205 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCBCS----SSBCEEEECSSC
T ss_pred CCCcCceEEEEecCHHHHHHHHHHccCCEeC----CcEEEEEEecCC
Confidence 3 69999999999999999999999998 999999998754
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.4e-32 Score=208.40 Aligned_cols=155 Identities=23% Similarity=0.420 Sum_probs=137.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcc----c-------ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
+++++|||+|||.++|+++|+++|++| | .|.++.+..+ +|||||+|.++++|.+|+ .||+..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---TTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---CCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 578999999999999999999999999 6 6777776544 899999999999999999 699999999
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCee
Q 024262 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~ 152 (270)
+.|.|.++..... .....+|||+|||..+++++|+++|+.||.|.
T Consensus 78 ~~i~v~~~~~~~~-----------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-----------------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp EECEEECCSSCCC-----------------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ceeeecCCcccCC-----------------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 9999998764411 11247999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 153 ~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+.++.+... |+|||+|.+.++|.+|++.|||..+. |+.|.|.++
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~A 171 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRA 171 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC----CeEEEEEeC
Confidence 9999988643 59999999999999999999999998 999998875
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=5.7e-32 Score=209.63 Aligned_cols=178 Identities=21% Similarity=0.335 Sum_probs=142.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhccc-----------ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-----------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G-----------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
+.+++|||+|||..+|+++|+++|+.|| .|..+.+. .++|||||+|.++++|.+|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 5789999999999999999999999995 56666554 44899999999999999999 699999999
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCee
Q 024262 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~ 152 (270)
+.|.|.++............... ...............+|||+|||..+++++|+++|+.||.|.
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSV---------------YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSC---------------CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcC---------------CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 99999998765322111000000 000001122234568999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCC
Q 024262 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 153 ~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
.+.+..+... |||||+|.+.++|..|++.|||..+. |+.|.|..+...
T Consensus 143 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~ 194 (198)
T 2yh0_A 143 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRASVG 194 (198)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET----TEECEEEESCCC
T ss_pred EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEECCCC
Confidence 9999988633 69999999999999999999999998 999999988643
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=3.8e-33 Score=212.15 Aligned_cols=162 Identities=14% Similarity=0.225 Sum_probs=139.2
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||..+++++|+++|..||.|..+.+ ..++.++|||||+|.++++|.+|++ ||+..|.|++|.|.++
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~ 88 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKP 88 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecC
Confidence 368899999999999999999999999998766322 3457789999999999999999996 9999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
..... .......+|||+|||..+++++|+++|+.||.|..+ .....
T Consensus 89 ~~~~~---------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~ 134 (175)
T 1fje_B 89 KGRDS---------------------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGK 134 (175)
T ss_dssp CCSSC---------------------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSS
T ss_pred CCccc---------------------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCC
Confidence 76421 112345899999999999999999999999998877 23334
Q ss_pred CCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..|||||+|.+.++|.+|+..|||..+. |+.|.|.++..
T Consensus 135 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~~ 173 (175)
T 1fje_B 135 SKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYYTGE 173 (175)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTEEEET----TEEEEEEECSS
T ss_pred CceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEecCC
Confidence 4579999999999999999999999998 99999998853
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=7.5e-33 Score=208.86 Aligned_cols=158 Identities=18% Similarity=0.365 Sum_probs=139.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++++|||+|||.++|+++|+++|+.||.|..|.++. ++.++|||||+|.++++|.+|+.. +..+.|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4789999999999999999999999999999999964 478899999999999999999994 57899999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.... ......+|||+|||..+++++|.++|+.||.|..+.++.+.
T Consensus 79 ~~~~-----------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 79 IPRD-----------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CCHH-----------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred cchh-----------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 6431 11234689999999999999999999999999999998775
Q ss_pred C----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
. .|||||+|.+.++|.+|++ +++..+. |+.|.|.++..
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~V~~a~p 165 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK----DRKIEIKRAEP 165 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSS----SSCEEEEECCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeC----CeEEEEeecCC
Confidence 4 3699999999999999998 8999998 99999998753
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.98 E-value=1e-31 Score=216.79 Aligned_cols=156 Identities=25% Similarity=0.348 Sum_probs=140.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||+++|+++|+++|+.||.|..|.+..+ +|||||+|.++++|..|+..|||..|.|+.|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 46789999999999999999999999999999999654 899999999999999999999999999999999997643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-
Q 024262 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
.+|||+|||..+++++|.++|+.||.|..+.++.+..+
T Consensus 97 -----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 135 (261)
T 3sde_A 97 -----------------------------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR 135 (261)
T ss_dssp -----------------------------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSC
T ss_pred -----------------------------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCC
Confidence 68999999999999999999999999999999887543
Q ss_pred --cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 --~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
|||||+|.+.++|..|+..|++..+.....++.|.|..+..
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 69999999999999999999765555444578888888764
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=5.7e-31 Score=215.24 Aligned_cols=165 Identities=18% Similarity=0.227 Sum_probs=146.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4578999999999999999999999999999998854 5678999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCC-CHHHHHHHHHhcCCeeEEEEeeC
Q 024262 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
...... .......+|||.|||..+ ++++|.++|+.||.|..+.++.+
T Consensus 173 ~~~~~~--------------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 173 DAGQLT--------------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CGGGCC--------------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred CCCCCC--------------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 754211 112345799999999995 99999999999999999999887
Q ss_pred CCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCC
Q 024262 160 SEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 160 ~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
..+ |+|||+|.+.++|.+|+..|||..+. |+.|.|.++...
T Consensus 221 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a~~~ 264 (284)
T 3smz_A 221 QDGQLKGFAVLEYETAEMAEEAQQQADGLSLG----GSHLRVSFCAPG 264 (284)
T ss_dssp SSCCEEEEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCSS
T ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeEEEEEEecCC
Confidence 544 69999999999999999999999998 999999998643
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.6e-30 Score=212.67 Aligned_cols=151 Identities=23% Similarity=0.280 Sum_probs=138.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|+.|| |..+.+ +.++|||||+|.++++|.+|+..|||..|.|++|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC
Confidence 4689999999999999999999999999 999888 455899999999999999999999999999999999985432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-
Q 024262 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
.+|||+|||..+++++|.++|+.||.|..+.++.+..+
T Consensus 96 -----------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 96 -----------------------------------------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp -----------------------------------------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred -----------------------------------------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 69999999999999999999999999999999887643
Q ss_pred ---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
|||||+|.+.++|..|+..|+|..+. ++.|.|..+..
T Consensus 135 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v~~a~~ 174 (284)
T 3smz_A 135 QSKGYGFAEYMKKDSAARAKSDLLGKPLG----PRTLYVHWTDA 174 (284)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCG
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 59999999999999999999999998 99999988864
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.1e-30 Score=214.45 Aligned_cols=167 Identities=13% Similarity=0.263 Sum_probs=141.9
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhccc-ceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||..+++++|.++|..|| .|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999553 5679999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCC
Q 024262 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
+....... ........+|||.|||.. +++++|.++|+.||.|..+.++.+.
T Consensus 196 ~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 196 PLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp CC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 65221110 112234589999999999 9999999999999999999998865
Q ss_pred C-----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCC
Q 024262 161 E-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~-----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
. .|||||+|.+.++|..|+ .|||..+. |+.|.|.++...
T Consensus 248 ~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~----g~~i~V~~a~~k 291 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG----NREISVSLADKK 291 (292)
T ss_dssp C---CCCEEEEEEESSHHHHHHHG-GGTTEEET----TEEEEEEECCCC
T ss_pred CcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC----CcEEEEEEecCC
Confidence 5 479999999999999999 99999998 999999988643
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=2.5e-30 Score=212.28 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=135.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||.++|+++|+++|+.||+|..|.|..+ ..++|||||+|.++++|.+|+. ||+..|.|+.|.|.++..
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECCC
Confidence 57899999999999999999999999999999999764 3458999999999999999996 999999999999998632
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCC-
Q 024262 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS- 160 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~- 160 (270)
.+|||+|||..+++++|.++|..|| .|..+.++.+.
T Consensus 118 ------------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 118 ------------------------------------------CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp ------------------------------------------CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred ------------------------------------------CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 5999999999999999999999999 99999998765
Q ss_pred --CCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 161 --EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 --~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..|||||+|.+.++|..|+..|+|..+. ++.|.|..+..
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~ 196 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIE----GYTLVTKVSNP 196 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 3479999999999999999999999998 89999988763
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=2.7e-25 Score=156.55 Aligned_cols=108 Identities=22% Similarity=0.316 Sum_probs=73.3
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+++|||+|||+.+++++|+++|++||.|.+|.|..+ +.++|||||+|.++++|++||..||+..|+|+.|.|.++....
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 678999999999999999999999999999999654 4568999999999999999999999999999999999987653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHH
Q 024262 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQD 140 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~ 140 (270)
...... ........+|||.|||+.+|++.
T Consensus 85 ~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 85 EREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp C-------------------------------------------------------
T ss_pred cccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 222111 11112235799999999999874
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=8.3e-23 Score=175.05 Aligned_cols=82 Identities=29% Similarity=0.513 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+.||+++|.++|++||.|..|.|+. ++.++|||||+|.++++|.+||..|||+.|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 5678999999999999999999999999999999964 5778999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024262 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87644
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=5.4e-23 Score=140.54 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.++++|.+|+..|||..|+|++|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467999999999999999999999999999999964 47789999999999999999999999999999999999986
Q ss_pred C
Q 024262 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 24
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.88 E-value=7.7e-23 Score=175.24 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=70.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+|+++|.++|..||.|..|.|+.+.. .|||||+|.+.++|..||..|||..|. +..|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC----CEEEE
Confidence 3457999999999999999999999999999999987753 369999999999999999999999998 99999
Q ss_pred eecCC
Q 024262 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|.++.
T Consensus 176 V~~a~ 180 (437)
T 3pgw_S 176 VDVER 180 (437)
T ss_pred EEEeC
Confidence 98886
No 25
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.88 E-value=5.7e-23 Score=144.86 Aligned_cols=106 Identities=26% Similarity=0.363 Sum_probs=95.5
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 2 ~~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
...++++|||+|||..+++++|+++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34788999999999999999999999999999999998888889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC
Q 024262 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD 150 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~ 150 (270)
..... .+++...++++|+++|++||.
T Consensus 84 ~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 54110 356777889999999999984
No 26
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=9.1e-22 Score=146.61 Aligned_cols=143 Identities=15% Similarity=0.074 Sum_probs=104.4
Q ss_pred EEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024262 36 IELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGA 114 (270)
Q Consensus 36 ~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (270)
+.|..+ ...+|||||+|.++++|++|+..+++....+..+.+............. ..
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 60 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------HH 60 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------------CC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------------cc
Confidence 444333 3678999999999999999998887644333333332211110000000 00
Q ss_pred CCCCCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCc
Q 024262 115 GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 115 ~~~~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
...........+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+.
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 138 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-- 138 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS--
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 01112234458999999999999999999999999999999988753 369999999999999999999999998
Q ss_pred cccceeeeecCCCC
Q 024262 191 WARGRITVKRYDRS 204 (270)
Q Consensus 191 ~~~~~i~v~~~~~~ 204 (270)
++.|.|..+...
T Consensus 139 --g~~l~v~~a~~~ 150 (158)
T 2kn4_A 139 --GRELRVQMARYG 150 (158)
T ss_dssp --SSEEEEEEECCS
T ss_pred --CeEEEEEECCCC
Confidence 999999998754
No 27
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=1.8e-22 Score=135.84 Aligned_cols=80 Identities=18% Similarity=0.302 Sum_probs=72.2
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhccc-ceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhc-CCccccCceEEEEec
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELA 80 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v~~~ 80 (270)
|++|||+|||+++|+++|+++|++|| +|.+|.|+. ++.++|||||+|.++++|.+||+.+ +++.|+|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 899998854 4788999999999999999999877 457899999999999
Q ss_pred CCCCC
Q 024262 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 28
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=136.06 Aligned_cols=81 Identities=59% Similarity=1.034 Sum_probs=77.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||.++++++|+++|++||.|..|.|..++.+++||||+|.+.++|++||+.||+..|.|+.|.|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 46789999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 29
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=2e-21 Score=143.40 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=110.6
Q ss_pred CCCCcEEEEEEcCHHHHHHHHHhc-CCccccCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024262 42 PRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGIS 120 (270)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (270)
...+|+++|+|.++++|++|+..| ||..|+| .|.+.++............ .........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~ 69 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------------HHHHMHRDS 69 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------CCCCSCSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------ccccccccC
Confidence 356899999999999999999999 9999999 9999987643111000000 000011223
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+ ..|||||+|.+.++|..|+..|||..+. ++.|.|..
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLC----GCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSS----SSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 345689999999999999999999999999999999887 3579999999999999999999999998 99999998
Q ss_pred CCC
Q 024262 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 145 a~~ 147 (150)
T 2i2y_A 145 SNG 147 (150)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 30
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=9.3e-22 Score=134.11 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC--CccccCceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||+.+|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|..|+..|+ +..|.|++|.|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 478999999999999999999999999999999999875 8999999999999999999886 47899999999999
Q ss_pred CCCCC
Q 024262 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 90 ~~~~~ 94 (105)
T 1sjq_A 90 NHKEL 94 (105)
T ss_dssp SSSSC
T ss_pred CCCCC
Confidence 87643
No 31
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=7.5e-22 Score=135.75 Aligned_cols=76 Identities=45% Similarity=0.718 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++|||+|||.++++++|+++|++||+|..|.+..+ ++|||||+|.++++|.+|+..||+..|.|+.|.|.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999776 78999999999999999999999999999999999998763
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=131.57 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcc--ccCceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~--~~g~~l~v~~~ 80 (270)
..|+++|||+|||..+|+++|.++|++||.|.++.+... +|||||+|.+.++|..|+..||+.. |.|++|.|+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 368999999999999999999999999999999999754 8999999999999999999999865 78999999999
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 865
No 33
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=4.5e-21 Score=135.00 Aligned_cols=83 Identities=24% Similarity=0.447 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 1 ~~~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
|..+++++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3458899999999999999999999999999999999965 57789999999999999999999999999999999999
Q ss_pred ecCCC
Q 024262 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99865
No 34
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=1.3e-21 Score=127.29 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=70.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.-|||+||++.+|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..|.|++|.|+.+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 478899999999999999999999999999999976 49999999999999999999999999999999999884
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=1.6e-21 Score=135.68 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
-+.++|||+|||+++++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|++||+.|||..|.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 36
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.2e-21 Score=129.05 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..||+..|.|++|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 357899999999999999999999999999999999654 67899999999999999999999999999999999999
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9876
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.9e-21 Score=130.42 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 37889999999999999999999999999999999955 567899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024262 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987643
No 38
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.85 E-value=1e-20 Score=130.54 Aligned_cols=78 Identities=19% Similarity=0.421 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++++++|+++|++||.|..|.+. ++||||+|.++++|.+||..||+..|.|+.|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 578999999999999999999999999999999987 579999999999999999999999999999999999876
Q ss_pred CCC
Q 024262 84 SGR 86 (270)
Q Consensus 84 ~~~ 86 (270)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 39
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-21 Score=132.26 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCC-CcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC--ccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~ 79 (270)
.+++++|||+|||. .+|+++|+++|++||.|.+|.|+.+ ++||||+|.+.++|..|+..||+ ..|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 46899999999999 9999999999999999999999765 68999999999999999998886 459999999999
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=130.23 Aligned_cols=82 Identities=33% Similarity=0.490 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.++|||+|||..+++++|+++|+.||.|..|.|..+ ..+++||||+|.++++|.+|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 367899999999999999999999999999999999764 3468999999999999999999999999999999999998
Q ss_pred CCC
Q 024262 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 92 ~~~ 94 (103)
T 2cqi_A 92 TPS 94 (103)
T ss_dssp CTT
T ss_pred CCc
Confidence 763
No 41
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.85 E-value=4.1e-21 Score=136.62 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCcCHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+..++.++|||||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3678999999999999999876 799999999999998888899999999999999999999999999999999999
Q ss_pred ecCCC
Q 024262 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99865
No 42
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=134.37 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC--ccccCceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~~ 80 (270)
..++++|||+|||+.+++++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|+..|++ ..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 468999999999999999999999999999999999865 79999999999999999998874 6899999999999
Q ss_pred CCCCCC
Q 024262 81 HGGSGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 876433
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.9e-21 Score=130.93 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec------CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
+.++++|||+|||.++++++|+++|+.||.|..|.|.. ++.+++||||+|.+.++|.+|+..||+..|.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46889999999999999999999999999999999964 236789999999999999999999999999999999
Q ss_pred EEecCCCC
Q 024262 77 VELAHGGS 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++....
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99998763
No 44
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.8e-21 Score=131.13 Aligned_cols=83 Identities=23% Similarity=0.312 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec-CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++++|||+|||+.+++++|+++|+.||.|..|.|.. ++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 36789999999999999999999999999999999965 46778999999999999999999999999999999999998
Q ss_pred CCCC
Q 024262 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7643
No 45
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.5e-20 Score=132.33 Aligned_cols=83 Identities=28% Similarity=0.426 Sum_probs=76.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|..||.|..|.|.. ++.++|||||+|.+.++|++||..||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 6789999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCCCCC
Q 024262 81 HGGSGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 93 ~~~~~~ 98 (115)
T 2dgo_A 93 TRKPPA 98 (115)
T ss_dssp SCCCCC
T ss_pred cCCCCC
Confidence 876443
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.5e-20 Score=128.78 Aligned_cols=82 Identities=24% Similarity=0.484 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+||. ||+..|.|+.|.|.+
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~ 85 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKR 85 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEE
Confidence 36789999999999999999999999999999999965 46789999999999999999999 999999999999999
Q ss_pred cCCCCC
Q 024262 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 86 a~~~~~ 91 (99)
T 2dgs_A 86 AEPRDS 91 (99)
T ss_dssp CCCCCC
T ss_pred CCCCcc
Confidence 987633
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=5.4e-21 Score=130.16 Aligned_cols=79 Identities=25% Similarity=0.535 Sum_probs=74.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
|+++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5899999999999999999999999999999999654 6779999999999999999999999999999999999998
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 48
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.1e-20 Score=129.01 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc--CCccccCceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||..+++++|+++|++||.|..|.|..+ +|||||+|.+.++|..|+..| ++..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 468899999999999999999999999999999988765 899999999999999999976 568899999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 89 ~~~~ 92 (101)
T 2cq1_A 89 NHKE 92 (101)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 8763
No 49
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=5.9e-21 Score=126.40 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+++|||+|||.++++++|+++|+.||+|..+.+.. ++.++|||||+|.++++|..|+..|||..|+|++|.|.++..
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 57999999999999999999999999999999964 467799999999999999999999999999999999999986
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 50
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=129.88 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC--ccccCceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~~ 80 (270)
..++++|||+|||..+++++|+++|++||.|..|.|..+ +|||||+|.+.++|.+|+..|++ ..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a 88 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYS 88 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 367899999999999999999999999999999998764 89999999999999999998865 4599999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 89 ~~~~ 92 (104)
T 1wex_A 89 TSKR 92 (104)
T ss_dssp SSSS
T ss_pred cCcc
Confidence 8763
No 51
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.8e-21 Score=131.77 Aligned_cols=81 Identities=35% Similarity=0.495 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|..+ +.+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 67899999999999999999999999999999999653 678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8763
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.2e-20 Score=128.87 Aligned_cols=82 Identities=27% Similarity=0.465 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.|..+ +.+++||||+|.+.++|.+|+..||+..|+|+.|.|.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 67899999999999999999999999999999999764 35789999999999999999999999999999999999987
Q ss_pred CCC
Q 024262 83 GSG 85 (270)
Q Consensus 83 ~~~ 85 (270)
...
T Consensus 93 ~~~ 95 (103)
T 2cq3_A 93 RVM 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 53
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=3.1e-20 Score=130.90 Aligned_cols=80 Identities=25% Similarity=0.369 Sum_probs=74.2
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+++++|+++|++||.|..|.|.. ++.+++||||+|.+.++|++||..||+ .|.|+.|.|.+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~ 92 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNL 92 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEE
Confidence 36789999999999999999999999999999999965 467899999999999999999999998 89999999999
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 93 a~~~ 96 (116)
T 2cqd_A 93 AYLG 96 (116)
T ss_dssp STTT
T ss_pred cccC
Confidence 9765
No 54
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.7e-21 Score=131.83 Aligned_cols=81 Identities=33% Similarity=0.512 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 6789999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 55
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=6.1e-21 Score=126.93 Aligned_cols=79 Identities=32% Similarity=0.546 Sum_probs=73.4
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|+++|++||.|..+.+.. ++.++|||||+|.++++|.+|+..|||..|+|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 36889999999999999999999999999999999843 467799999999999999999999999999999999998
Q ss_pred cC
Q 024262 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 56
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1e-20 Score=128.66 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+.++|||+|||..+++++|+ ++|++||+|..|.|..+...++||||+|.+.++|.+|+..|||..|+|++|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999976644489999999999999999999999999999999999
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9765
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=6.3e-21 Score=131.36 Aligned_cols=82 Identities=30% Similarity=0.485 Sum_probs=76.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.|.. ++.+++||||+|.++++|.+|+..||+..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 6789999999999999999999999999999999955 3678999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024262 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 58
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=2.7e-20 Score=130.87 Aligned_cols=81 Identities=20% Similarity=0.280 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||..+++++|+++|.+||.|..|.|.. ++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 36789999999999999999999999999999999965 4567899999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 92 ~~~ 94 (114)
T 2do0_A 92 ERA 94 (114)
T ss_dssp SCC
T ss_pred ccC
Confidence 765
No 59
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.5e-20 Score=130.10 Aligned_cols=81 Identities=28% Similarity=0.398 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 6789999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8763
No 60
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8e-21 Score=129.37 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEE-EEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-ELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~-~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..++++|||+|||..+++++|+++|+.||.|..+ .|.. ++.++|||||+|.++++|.+|+..||+..|.|++|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999999999999999 8854 46789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024262 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 998763
No 61
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.84 E-value=2.5e-21 Score=132.10 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=76.2
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEE
Q 024262 1 MSGRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 1 ~~~~~s~~i~V~nlp~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|+..++++|||+|||.++++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..|+|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 345889999999999999999999 9999999999999987777789999999999999999999999999999999
Q ss_pred EEecCCC
Q 024262 77 VELAHGG 83 (270)
Q Consensus 77 v~~~~~~ 83 (270)
|.++...
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999865
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=1e-20 Score=127.78 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec-CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++++|||+|||..+++++|+++|++||.|..+.+.. ++.+++||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 47889999999999999999999999999999999965 56778999999999999999999999999999999999998
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 63
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=5.8e-21 Score=127.62 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 5688999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 64
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=127.84 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|++||+|..|.+..+ +.+++||||+|.++++|.+|+..||+..|.|++|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 56899999999999999999999999999999999654 678999999999999999999999999999999999987
Q ss_pred C
Q 024262 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 65
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=1.8e-21 Score=131.48 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccc--eEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCc----cccCce
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR--ILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGCR 74 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~--v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~----~~~g~~ 74 (270)
..-.||||+|||+.+|+++|+++|++||. |.+|.+.. ++.++|||||+|.++++|.+|++.|||. .|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45679999999999999999999999995 66788754 4788999999999999999999999996 589999
Q ss_pred EEEEecCC
Q 024262 75 LRVELAHG 82 (270)
Q Consensus 75 l~v~~~~~ 82 (270)
|.|.++++
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 66
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=130.22 Aligned_cols=81 Identities=35% Similarity=0.551 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|++||.|..|.|.. ++.+++||||+|.++++|.+|+..||+..|.|++|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 6889999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8763
No 67
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=128.98 Aligned_cols=80 Identities=23% Similarity=0.438 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999999965 45678999999999999999999999999999999999998
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 68
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.7e-20 Score=125.11 Aligned_cols=77 Identities=34% Similarity=0.623 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+.++|||+|||.++++++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 3788999999999999999999999999999999998 78999999999999999999999999999999999987
Q ss_pred CC
Q 024262 83 GS 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 80 ~~ 81 (90)
T 2dnq_A 80 KS 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 69
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.5e-20 Score=129.48 Aligned_cols=82 Identities=24% Similarity=0.398 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec----CCCCCcEEEEEEcCHHHHHHHHHhc-CCccccCceEEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRV 77 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v 77 (270)
..++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+||..| |+..|.|+.|.|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v 91 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVL 91 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEE
Confidence 36789999999999999999999999999999999944 4678999999999999999999999 999999999999
Q ss_pred EecCCCC
Q 024262 78 ELAHGGS 84 (270)
Q Consensus 78 ~~~~~~~ 84 (270)
.++....
T Consensus 92 ~~a~~~~ 98 (107)
T 2cph_A 92 EWADSEV 98 (107)
T ss_dssp EECCCCC
T ss_pred EeCCCCC
Confidence 9998763
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1.1e-20 Score=133.02 Aligned_cols=82 Identities=21% Similarity=0.506 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++++++|+++|+.||.|..|.|.. ++.+++||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5679999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024262 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87643
No 71
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1e-20 Score=128.53 Aligned_cols=79 Identities=30% Similarity=0.444 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.+..+ +.++|||||+|.++++|.+|+..||+..|.|++|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 67899999999999999999999999999999999653 577899999999999999999999999999999999998
Q ss_pred CC
Q 024262 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 72
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.2e-20 Score=129.02 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=74.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC----CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..+.++|||+|||.++++++|+++|+.|| |..|.|+.+ +.++|||||+|.++++|.+|| .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 46789999999999999999999999999 999999654 677999999999999999999 799999999999999
Q ss_pred ecCCCC
Q 024262 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998763
No 73
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=125.68 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCC---C-CCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP---R-PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~---~-~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
-.+++|||+|||.++++++|+++|++||.|..+.+..+. . ++|||||+|.++++|.+|+..|||..|+|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 357899999999999999999999999999999985532 2 789999999999999999999999999999999999
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8765
No 74
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=130.82 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 56789999999999999999999999999999999654 677899999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 765
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2.3e-20 Score=129.20 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccC---ceEEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG---CRLRVE 78 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~l~v~ 78 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+||..||+..|.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 5689999999999999999999999999999999965 46678999999999999999999999999988 999999
Q ss_pred ecCCCCC
Q 024262 79 LAHGGSG 85 (270)
Q Consensus 79 ~~~~~~~ 85 (270)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987644
No 76
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=127.93 Aligned_cols=80 Identities=25% Similarity=0.406 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..+.++|||+|||+.+++++|+++|+.||+|..|.|..+ +.+++||||+|.++++|.+|+..||+..|.|++|.|.++
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGP 92 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEc
Confidence 367899999999999999999999999999999999654 567899999999999999999999999999999999997
Q ss_pred CC
Q 024262 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 93 ~~ 94 (95)
T 2ywk_A 93 SS 94 (95)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 77
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.6e-20 Score=129.61 Aligned_cols=81 Identities=20% Similarity=0.412 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcC------CccccCce
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRD------GYNFDGCR 74 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~------~~~~~g~~ 74 (270)
.++++|||+|||..+++++|+++|..||.|..|.|.. ++.++|||||+|.+.++|.+||..|| +..|.|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5789999999999999999999999999999999965 36789999999999999999999999 99999999
Q ss_pred EEEEecCCCC
Q 024262 75 LRVELAHGGS 84 (270)
Q Consensus 75 l~v~~~~~~~ 84 (270)
|.|.++....
T Consensus 93 l~v~~a~~~~ 102 (111)
T 1x4h_A 93 LKVDLAVTRD 102 (111)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCc
Confidence 9999998763
No 78
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6e-20 Score=127.68 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccC-----ceEEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CRLRVE 78 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~l~v~ 78 (270)
...++|||+|||.++++++|+++|.+||+|..|.|..+ +||||+|.++++|++||+.||+..|.| +.|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 56799999999999999999999999999999999865 899999999999999999999999999 999999
Q ss_pred ecCCCC
Q 024262 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998763
No 79
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.7e-20 Score=126.23 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccc--CceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~ 81 (270)
.++++|||+|||.++++++|+++|++||.|..|.+... ++||||+|.+.++|++|+..||+..|. |+.|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 67899999999999999999999999999999998754 789999999999999999999999999 9999999998
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 80
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.8e-20 Score=124.41 Aligned_cols=76 Identities=34% Similarity=0.610 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||.++++++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4788999999999999999999999999999999997 45999999999999999999999999999999999987
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 82 ~ 82 (92)
T 2dgt_A 82 R 82 (92)
T ss_dssp C
T ss_pred C
Confidence 6
No 81
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=129.22 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCcCHHHHHHHhhcccceE-EEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCce---
Q 024262 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRIL-DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--- 74 (270)
Q Consensus 2 ~~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~-~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--- 74 (270)
...++++|||+|||.++++++|+++|++||.|. .|.|.. ++.++|||||+|.++++|++|+..||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 357899999999999999999999999999999 999864 4677899999999999999999999999999999
Q ss_pred -EEEEecCCC
Q 024262 75 -LRVELAHGG 83 (270)
Q Consensus 75 -l~v~~~~~~ 83 (270)
|.|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998765
No 82
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=129.54 Aligned_cols=78 Identities=26% Similarity=0.326 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCC-cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC--CccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~ 79 (270)
..++++|||+|||.+ +++++|+++|++||.|.+|.|... +|||||+|.+.++|..|+..|| +..|.|++|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 478999999999998 999999999999999999999754 8999999999999999999885 4679999999999
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 9865
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=2e-20 Score=129.90 Aligned_cols=80 Identities=26% Similarity=0.468 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|+|++|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 6789999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
..+
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 84
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.3e-20 Score=128.64 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccc---cCceEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLR 76 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~ 76 (270)
..++++|||+|||.++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 46789999999999999999999999999999999965 467899999999999999999999999988 899999
Q ss_pred EEecCCCC
Q 024262 77 VELAHGGS 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998763
No 85
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2e-20 Score=134.03 Aligned_cols=80 Identities=30% Similarity=0.465 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||+|..|.|.. ++.++|||||+|.++++|++||..||+..|+|++|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 6789999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
..+
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 865
No 86
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=128.30 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=72.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+++|+++|.++|++||+|..|.|..+ +.++|||||+|.++++|..||. +|+..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 46789999999999999999999999999999999654 6789999999999999999999 99999999999999876
Q ss_pred C
Q 024262 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 87
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=2.6e-20 Score=130.10 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999999999964 4677999999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 765
No 88
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=1.1e-20 Score=129.54 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCC------CcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccC-c
Q 024262 4 RFSRTIYVGNLPS------DIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-C 73 (270)
Q Consensus 4 ~~s~~i~V~nlp~------~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~ 73 (270)
..+++|||+|||. ++++++|+++|++||.|..|.|+. ++.++|||||+|.++++|.+|+..|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999999854 47789999999999999999999999999999 9
Q ss_pred eEEEEecCC
Q 024262 74 RLRVELAHG 82 (270)
Q Consensus 74 ~l~v~~~~~ 82 (270)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 89
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.6e-20 Score=131.76 Aligned_cols=79 Identities=24% Similarity=0.567 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||.++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|++
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ 116 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQL 116 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 35679999999999999999999999999999999964 467899999999999999999999999999999999998
Q ss_pred cC
Q 024262 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
++
T Consensus 117 ak 118 (118)
T 2khc_A 117 KK 118 (118)
T ss_dssp C-
T ss_pred cC
Confidence 74
No 90
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.83 E-value=5.3e-20 Score=126.89 Aligned_cols=80 Identities=28% Similarity=0.490 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+++++|+++|+.|| |..|.|+.+ +.++|||||+|.++++|.+|| .||+..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 46789999999999999999999999997 999999653 677899999999999999999 7999999999999999
Q ss_pred cCCCC
Q 024262 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 90 a~~~~ 94 (103)
T 2dng_A 90 AEGRK 94 (103)
T ss_dssp CCCCC
T ss_pred ecCCC
Confidence 98763
No 91
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.1e-20 Score=123.35 Aligned_cols=76 Identities=32% Similarity=0.549 Sum_probs=72.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||.++++++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCC
Confidence 3678999999999999999999999999999999997 45999999999999999999999999999999999987
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 81 ~ 81 (90)
T 2dnp_A 81 G 81 (90)
T ss_dssp C
T ss_pred C
Confidence 6
No 92
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.7e-21 Score=129.33 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+|||+|||.++++++|+++|+.|| .|..+.+.. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999855 56789999999999999999999999999999999999988
Q ss_pred CCC
Q 024262 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 82 ~~~ 84 (90)
T 3p5t_L 82 KLE 84 (90)
T ss_dssp ---
T ss_pred CCc
Confidence 763
No 93
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.83 E-value=1.1e-20 Score=132.83 Aligned_cols=74 Identities=62% Similarity=1.012 Sum_probs=65.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccce-----e
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR-----I 196 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~-----i 196 (270)
...++|||+|||..+++++|+++|++||.|..+.++.+ +||||+|.+.++|++|++.|||..|. ++. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFR----SHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCC----CTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEEC----CcEeeeEEE
Confidence 45689999999999999999999999999999999887 79999999999999999999999998 666 5
Q ss_pred eeecCC
Q 024262 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 666543
No 94
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=3.3e-20 Score=124.45 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||.++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+ .||+..|.|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999954 5678999999999999999999 799999999999999987
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 95
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.7e-20 Score=131.03 Aligned_cols=81 Identities=22% Similarity=0.347 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHH---HHhhcccceEEEEEecCC------CCCcEEEEEEcCHHHHHHHHHhcCCccccCce
Q 024262 4 RFSRTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~---~~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.+.++|||+|||+++++++|. ++|++||+|..|.|..+. .++|||||+|.++++|++||..||+..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999996542 45699999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 024262 75 LRVELAHGGS 84 (270)
Q Consensus 75 l~v~~~~~~~ 84 (270)
|.|.++..+.
T Consensus 93 l~V~~a~~k~ 102 (111)
T 2cpi_A 93 LKASLGTTKY 102 (111)
T ss_dssp EEEESCCCCS
T ss_pred EEEEeccccc
Confidence 9999998763
No 96
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=3.3e-20 Score=128.88 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 6789999999999999999999999999999999864 46778999999999999999999999999999999999875
No 97
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.82 E-value=5e-20 Score=136.81 Aligned_cols=82 Identities=33% Similarity=0.472 Sum_probs=75.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||+|..|.|..+ +.+++||||+|.++++|.+||..||+..|.|+.|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 57899999999999999999999999999999999653 567899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024262 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87643
No 98
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.4e-20 Score=129.54 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceE--------EEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--------DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~--------~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.++++|||+|||..+++++|+++|+.||.|. .|.|.. ++.++|||||+|.++++|.+||..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999998 688854 46789999999999999999999999999999
Q ss_pred ceEEEEecCCCC
Q 024262 73 CRLRVELAHGGS 84 (270)
Q Consensus 73 ~~l~v~~~~~~~ 84 (270)
+.|.|.++....
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999998763
No 99
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.7e-20 Score=125.79 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+++++|+++|++||.|..|.+..+ ++||||+|.+.++|.+|+..||+..|.|++|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 57889999999999999999999999999999999865 899999999999999999999999999999999999876
No 100
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6e-20 Score=129.29 Aligned_cols=81 Identities=21% Similarity=0.363 Sum_probs=74.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccce----EEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v----~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.++++|||+|||..+|+++|+++|..||.| ..+.+. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 577999999999999999999999999998 555555 788899999999999999999999999999999999999
Q ss_pred cCCCCC
Q 024262 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 102 a~~~~~ 107 (115)
T 2cpx_A 102 GKNKKQ 107 (115)
T ss_dssp CCCCSC
T ss_pred ccCCCC
Confidence 987643
No 101
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=4.4e-20 Score=127.66 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=73.9
Q ss_pred CCCCeEEEcCCCCCc------CHHHHHHHhhcccceEEEEEe-cCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCc-eE
Q 024262 4 RFSRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RL 75 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~------t~~~l~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l 75 (270)
..+++|||+|||..+ ++++|+++|++||.|..|.|. .++.++|||||+|.++++|.+|+..|||..|.|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 889999999999999999985 4678899999999999999999999999999998 99
Q ss_pred EEEecCCC
Q 024262 76 RVELAHGG 83 (270)
Q Consensus 76 ~v~~~~~~ 83 (270)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 102
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=123.50 Aligned_cols=72 Identities=28% Similarity=0.469 Sum_probs=67.0
Q ss_pred CCeEEEcCCCCCc------CHHHHHHHhhcccceEEEEEe-cCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCc-eEEE
Q 024262 6 SRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRV 77 (270)
Q Consensus 6 s~~i~V~nlp~~~------t~~~l~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l~v 77 (270)
+++|||+|||..+ ++++|+++|++||+|..+.|. .++.++|||||+|.++++|.+|+..|||..|+|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999985 4678899999999999999999999999999999 8876
No 103
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.5e-19 Score=124.52 Aligned_cols=80 Identities=59% Similarity=0.936 Sum_probs=71.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccC-ccccceeeee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN-PWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~-~~~~~~i~v~ 199 (270)
....++|||+|||..+++++|+++|..||.|..+.++.+ +||||+|.+.++|++|++.||+..+.+ .+.++.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 345689999999999999999999999999999999987 799999999999999999999999981 2222999999
Q ss_pred cCCC
Q 024262 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.+..
T Consensus 89 ~a~~ 92 (108)
T 1x4c_A 89 VDGP 92 (108)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9864
No 104
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.5e-20 Score=128.99 Aligned_cols=80 Identities=28% Similarity=0.494 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||.++++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 67899999999999999999999999999999999654 45799999999999999999999999999999999999876
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 105
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=126.59 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.|..+ ++||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 56789999999999999999999999999999999876 899999999999999999999999999999999999876
Q ss_pred C
Q 024262 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 106
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=3.8e-20 Score=126.70 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEE--------EEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.+.++|||+|||.++++++|+++|+.||.|.. +.+.. ++.++|||||+|.+.++|.+|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 57899999999999999999999999999999 88854 46779999999999999999999999999999
Q ss_pred ceEEEEecC
Q 024262 73 CRLRVELAH 81 (270)
Q Consensus 73 ~~l~v~~~~ 81 (270)
+.|.|.++.
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 107
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=5.5e-20 Score=122.25 Aligned_cols=75 Identities=28% Similarity=0.477 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc-CCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|++||.|..+.+..+ +|||||+|.+.++|.+|+..| |+..|.|++|.|.+++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 57899999999999999999999999999999999864 799999999999999999988 9999999999999874
No 108
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=7.4e-20 Score=122.16 Aligned_cols=77 Identities=23% Similarity=0.461 Sum_probs=70.9
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+++++|+++|++||.|..+.+.. ++.++|||||+|.+.++|.+|+. +++..|+|+.|.|++
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~ 86 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKK 86 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEe
Confidence 36789999999999999999999999999999999964 46789999999999999999997 688899999999987
Q ss_pred c
Q 024262 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
+
T Consensus 87 A 87 (87)
T 3s7r_A 87 A 87 (87)
T ss_dssp C
T ss_pred C
Confidence 5
No 109
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-19 Score=125.98 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=75.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccc-eEEEEEe-c---CCCCCcEEEEEEcCHHHHHHHHHhcC--CccccCceE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELK-I---PPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRL 75 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~-~---~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l 75 (270)
+.++++|||+|||..+++++|+++|..||. |..+.+. . ++.++|||||+|.+.++|..|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 367899999999999999999999999998 9999886 3 35789999999999999999999996 599999999
Q ss_pred EEEecCCCCC
Q 024262 76 RVELAHGGSG 85 (270)
Q Consensus 76 ~v~~~~~~~~ 85 (270)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 110
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=9.8e-20 Score=123.93 Aligned_cols=76 Identities=25% Similarity=0.544 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCC-CcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~s~~i~V~nlp~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++++|||+|||. ++++++|+++|+.||.|..+.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 93 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSS 93 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 36789999999998 99999999999999999999984 7999999999999999999999999999999999987
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 94 ~~ 95 (97)
T 2xnq_A 94 SN 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 111
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=3.4e-20 Score=128.62 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...++|||+|||+++++++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++||..|||..|.|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 899988853 35799999999999999999999999999999999999875
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 112
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=4.5e-20 Score=132.06 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|+. ++.++|||||+|.++++|.+||..||+..|.|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 5678999999999999999999999999999999954 5677999999999999999999999999999999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 100 ~~~~ 103 (126)
T 3ex7_B 100 FVRG 103 (126)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8653
No 113
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.2e-20 Score=125.77 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+++++|+++|++||.|. +....++.+++||||+|.++++|++||..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999883 222346788999999999999999999999999999999999999876
No 114
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.8e-20 Score=127.02 Aligned_cols=80 Identities=13% Similarity=0.219 Sum_probs=72.6
Q ss_pred CCCCCCeEEE--cCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc-----cCce
Q 024262 2 SGRFSRTIYV--GNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF-----DGCR 74 (270)
Q Consensus 2 ~~~~s~~i~V--~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-----~g~~ 74 (270)
+..++++||| +||+.++++++|+++|++||.|..|.|..+ +|||||+|.+.++|++|+..|||..| .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999999 779999999999999999999999987643 89999999999999999999999988 6899
Q ss_pred EEEEecCCCC
Q 024262 75 LRVELAHGGS 84 (270)
Q Consensus 75 l~v~~~~~~~ 84 (270)
|.|.++...+
T Consensus 98 l~v~~a~~~p 107 (114)
T 2cq2_A 98 LYLNFVEKVQ 107 (114)
T ss_dssp CEEEEESCCC
T ss_pred EEEEecccCc
Confidence 9999998653
No 115
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=131.86 Aligned_cols=81 Identities=31% Similarity=0.581 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5679999999999999999999999999999999964 3567999999999999999999999999999999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 116
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=8.9e-20 Score=126.01 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=75.8
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhc-ccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcc-ccCceEEEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYN-FDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~-~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g~~l~v~ 78 (270)
..++++|||+|||.++++++|+++|+. ||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+.. |+|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 367899999999999999999999999 99999999955 56779999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 024262 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997653
No 117
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.4e-19 Score=125.85 Aligned_cols=79 Identities=13% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..+ +..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 6789999999999999999999999999999999965 3778999999999999999999965 59999999999999
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 866
No 118
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=8.7e-20 Score=126.64 Aligned_cols=75 Identities=27% Similarity=0.472 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++++++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.++...
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 578999999999999999999999999999999998 799999999999999999999999999999999999865
No 119
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=4.8e-20 Score=127.61 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=74.8
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+++++|+++|++||+|..|.|.. ++.++|||||+|.++++|.+||.. |+..|.|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 37889999999999999999999999999999999965 467789999999999999999997 99999999999999
Q ss_pred cCCCC
Q 024262 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 88663
No 120
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.4e-19 Score=122.70 Aligned_cols=75 Identities=29% Similarity=0.421 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||.++++++|+++|++| |.|..|.+. ++||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999875 6899999999999999999999999999999999998
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 121
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-20 Score=125.23 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=72.4
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.++++|.+|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46899999999999999999999999999999999965 467899999999999999999999999999999998775
Q ss_pred cC
Q 024262 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 122
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.5e-20 Score=127.98 Aligned_cols=77 Identities=26% Similarity=0.307 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.+++|||+|||..+++++|+++|++||.|..|.|.. .++||||+|.+.++|..|+..|||..|.|++|.|.++...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4578999999999999999999999999999998864 4789999999999999999999999999999999999764
No 123
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.6e-20 Score=124.70 Aligned_cols=75 Identities=25% Similarity=0.514 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCC-CcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~-~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. .+++++|+++|++||.|..|.+. +|||||+|.+.++|..|+..||+..|.|++|.|.++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 6899999999998 99999999999999999999995 78999999999999999999999999999999999976
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 83 ~ 83 (96)
T 2kvi_A 83 N 83 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 124
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.2e-19 Score=117.80 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=67.9
Q ss_pred CCCCe-EEEcCCCCCcCHHH----HHHHhhcc-cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEE
Q 024262 4 RFSRT-IYVGNLPSDIREYE----VEDLFYKY-GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~s~~-i~V~nlp~~~t~~~----l~~~F~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.|+.| |||+|||..+++++ |+++|++| |+|.+| + .|+|||+|.+.++|..|++.|||..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 56777 99999999999988 55899999 599998 3 399999999999999999999999999999999
Q ss_pred EecCCCCC
Q 024262 78 ELAHGGSG 85 (270)
Q Consensus 78 ~~~~~~~~ 85 (270)
.+++....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99987644
No 125
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=5.4e-20 Score=125.19 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.++++|.+|+..|||..|.|+.|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 578999999999999999999999999999877 567788999999999999999999999999999999999998765
No 126
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=7.8e-20 Score=135.09 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+.++|||+|||..+++++|+++|+.|| .|..|.|+. ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999964 578899999999999999999999999999999999999
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8643
No 127
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=2.1e-19 Score=128.22 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5779999999999999999999999999999999965 46789999999999999999999999999999999999998
Q ss_pred CCC
Q 024262 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 763
No 128
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.9e-20 Score=123.12 Aligned_cols=78 Identities=21% Similarity=0.313 Sum_probs=70.8
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC-ccccCceEEEEec
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~ 80 (270)
..++++|||+|||.++++++|+++|++||. |..+.+. +++||||+|.+.++|.+|+..||+ ..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 478899999999999999999999999999 6666654 379999999999999999999999 9999999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 81 ~~~~ 84 (93)
T 2cqh_A 81 VSKK 84 (93)
T ss_dssp CCCC
T ss_pred cCcc
Confidence 8763
No 129
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=9.8e-20 Score=124.11 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..+++|||+|||..+++++|+++|+.||.|. +.+. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4589999999999999999999999999996 5554 3467899999999999999999999999999999999999865
No 130
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=4.1e-20 Score=127.73 Aligned_cols=80 Identities=31% Similarity=0.594 Sum_probs=74.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 4578999999999999999999999999999999864 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 865
No 131
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=124.43 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++++++|+++|+.|+.|.-+....++.+++||||+|.++++|.+||..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 67899999999999999999999999876554443456778999999999999999999999999999999999999876
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.80 E-value=7.8e-20 Score=125.59 Aligned_cols=76 Identities=26% Similarity=0.459 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+++|||+|||.++++++|+++|+.||.|..+.+.. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3578999999999999999999999999999999973 489999999999999999999999999999999999865
No 133
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=5.9e-20 Score=125.89 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec----CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
...++|||+|||.++++++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5689999999999999999999999999 99999954 5678999999999999999999 7999999999999999
Q ss_pred cCCC
Q 024262 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8765
No 134
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-20 Score=126.36 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||..+++++|+++|..||.|..+.++ .++.++|||||+|.++++|++|+..||+..|.|+.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999766553 35678999999999999999999999999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 135
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=3.5e-20 Score=125.89 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|.+||.|..+.++ .++.++|||||+|.++++|.+|+..||+..|.|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 356899999999999999999999999999876664 35677899999999999999999999999999999999987
Q ss_pred C
Q 024262 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 136
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.1e-20 Score=128.36 Aligned_cols=79 Identities=27% Similarity=0.434 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|| .||+..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 3468999999999999999999999999999999964 3678999999999999999999 79999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 102 ~~~ 104 (114)
T 2cq4_A 102 QAE 104 (114)
T ss_dssp HHH
T ss_pred CCC
Confidence 754
No 137
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=6.3e-20 Score=118.94 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=67.4
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+|||+|||.++++++|+++|++||+|..+.+.. ++.++|||||+|.++++|++|+. ||+..|+|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999854 46789999999999999999999 9999999999999875
No 138
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=7.2e-20 Score=133.93 Aligned_cols=82 Identities=26% Similarity=0.406 Sum_probs=75.2
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEE--------EEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCce
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
..++++|||+|||+.+|+++|+++|+.||.|.. +.+..++.++|||||+|.+.++|.+||..|||..|.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 368899999999999999999999999998865 555678889999999999999999999999999999999
Q ss_pred EEEEecCCCC
Q 024262 75 LRVELAHGGS 84 (270)
Q Consensus 75 l~v~~~~~~~ 84 (270)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999998653
No 139
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2.7e-19 Score=120.45 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||.++++++|+++|+.| .|..|.|+. ++.++|||||+|.++++|.+|+. ||+..|+|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 678999999999999999999999999 999999865 46778999999999999999999 99999999999999988
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 66
No 140
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=1.5e-19 Score=130.11 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=74.1
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEE--EEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCc----cccCc
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGC 73 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~--~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~----~~~g~ 73 (270)
..++++|||+|||+++|+++|+++|+.||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 467899999999999999999999999999966 88854 578899999999999 999999999999 99999
Q ss_pred eEEEEecCCCC
Q 024262 74 RLRVELAHGGS 84 (270)
Q Consensus 74 ~l~v~~~~~~~ 84 (270)
.|.|.++....
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998753
No 141
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.2e-19 Score=126.56 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||.++++++|+++|..||.|..|.|+.+ +.++|||||+|.+.++|.+||.. |+..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999654 67899999999999999999996 9999999999999998
Q ss_pred CCC
Q 024262 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 763
No 142
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.9e-19 Score=121.64 Aligned_cols=80 Identities=18% Similarity=0.298 Sum_probs=73.0
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||..+++++|+++|..||.|..|.|.. ++.++|||||+|.+.++|.+||. ++..|+|+.|.|.+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~ 89 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKL 89 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEEC
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEe
Confidence 36789999999999999999999999999999999965 36788999999999999999999 47799999999999
Q ss_pred cCCCC
Q 024262 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 90 a~~~~ 94 (103)
T 2cqg_A 90 PNSKQ 94 (103)
T ss_dssp CCTTC
T ss_pred cCCCC
Confidence 98763
No 143
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=2.1e-19 Score=128.17 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||..+++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 468999999999999999999999999999999954 5788999999999999999999 699999999999999988
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 144
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=2.5e-19 Score=124.96 Aligned_cols=74 Identities=30% Similarity=0.625 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCC-cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 5 FSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~s~~i~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++++|||+|||.. +++++|+++|++||.|..|.+ +++||||+|.+.++|.+|+..||+..|+|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999998 3899999999999999999999999999999999999754
No 145
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=122.12 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEE-EEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+++++|+++|..||.|.. |.|.. ++.++|||||+|.++++|.+||.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56899999999999999999999999999987 77754 577899999999999999999996 999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 146
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=7.5e-20 Score=119.21 Aligned_cols=73 Identities=14% Similarity=0.316 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++|||+|||.++++++|+++|++||+|..+.+.. ++.++|||||+|.++++|.+|+..++ ..|+|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999965 46789999999999999999999888 9999999999986
No 147
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=1.1e-19 Score=131.23 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+||..||+..|.|++|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5678999999999999999999999999999999954 4688999999999999999999999999999999999999
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 148
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=6.6e-19 Score=119.23 Aligned_cols=77 Identities=17% Similarity=0.373 Sum_probs=67.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
...++|||+|||.++++++|+++|+.||.|..| +......+ ||||+|.++++|.+||. ||+..|+|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 567899999999999999999999999999998 32211122 99999999999999999 9999999999999987655
No 149
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.79 E-value=4.3e-19 Score=132.06 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=75.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+||..|||..|.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 4578999999999999999999999999999999965 5788999999999999999999999999999999999999
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 876
No 150
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=3.7e-19 Score=129.71 Aligned_cols=77 Identities=32% Similarity=0.556 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||+|..+.+.. ++.++|||||+|.++++|.+|+..||+..|+|+.|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999954 4778999999999999999999999999999999999875
No 151
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=2.4e-19 Score=134.23 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|.++|.+||.|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5678899999999999999999999999999999964 5677899999999999999999999999999999999999
Q ss_pred CCCC
Q 024262 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 8653
No 152
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=6.1e-20 Score=123.38 Aligned_cols=76 Identities=32% Similarity=0.576 Sum_probs=69.5
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++|||+|||.++++++|+++|++||+|..+.+.. ++.++|||||+|.+.+ |.+|+..|||..|+|+.|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999965 3778999999999999 99999999999999999999999865
No 153
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=4.8e-19 Score=124.41 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=66.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCce-----EEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-----LRVE 78 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-----l~v~ 78 (270)
...++|||+|||.++++++|+++|.+||+|..|.|+.+ +||||+|.++++|++||+.||+..|+|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45789999999999999999999999999999999765 89999999999999999999999999998 7777
Q ss_pred ecCCC
Q 024262 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
.+...
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 66543
No 154
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.9e-19 Score=126.30 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccce-EEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI-LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v-~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|+. ++.++|||||+|.+.++|.+||.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 578999999999999999999999999999 7788854 577899999999999999999995 999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 155
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=124.26 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=73.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccc--------cCc
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNF--------DGC 73 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--------~g~ 73 (270)
.+.++|||+|||.++++++|+++|..||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 5789999999999999999999999999999999965 467789999999999999999999999999 578
Q ss_pred eEEEEecCCC
Q 024262 74 RLRVELAHGG 83 (270)
Q Consensus 74 ~l~v~~~~~~ 83 (270)
+|.|.++.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998754
No 156
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=1.8e-19 Score=127.10 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccc---eEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. ++.++|||||+|.++++|++||. ||+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 56789999999999999999999999998 88888864 36789999999999999999999 99999999999999
Q ss_pred ecCCC
Q 024262 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 157
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.8e-18 Score=117.83 Aligned_cols=76 Identities=25% Similarity=0.478 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|| ++++++|+++|++||+|..|.|. .+++||||+|.+.++|.+||..||+..|.|++|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57899999996 89999999999999999999985 45899999999999999999999999999999999999876
Q ss_pred C
Q 024262 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 158
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=7.4e-20 Score=125.73 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||.++++++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 47889999999999999999999999998877222 2357889999999999999999999 99999999999999998
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 159
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=2.9e-19 Score=119.48 Aligned_cols=77 Identities=32% Similarity=0.372 Sum_probs=71.7
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++.+++|||+|||..+++++|+++|++| .|..+.+. .++|||||+|.++++|.+|+..|||..|+|++|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999885 5589999999999999999999999999999999999865
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 160
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.78 E-value=5e-19 Score=130.47 Aligned_cols=78 Identities=42% Similarity=0.733 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||+.+++++|+++|+.||.|..|.+..+ ++|||||+|.+.++|..|+..|||..|.|++|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 56799999999999999999999999999999999765 6899999999999999999999999999999999998765
No 161
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=4.5e-19 Score=121.63 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|+.||.| .|.|+. ++.++|||||+|.++++|++||. +|+..|+|+.|.|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 577899999999999999999999999955 888854 56789999999999999999996 89999999999999887
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 162
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=118.45 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEE-EecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+++|||+|||..+++++|+++|..||.|..+. +..+. ..+.|||+|.+.++|.+|+..|||..|.|++|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4578999999999999999999999999999994 65442 244599999999999999999999999999999999987
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 163
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=2.2e-18 Score=126.40 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccC--ceEEEEecCCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGGS 84 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~~~~ 84 (270)
.+|||+||+..+|+++|+++|++||+|..|.|.. +.+++||||+|.+.++|..|+..|||..|.| +.|.|++++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4588999999999999999999999999999853 3357899999999999999999999999965 999999998763
No 164
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=2.6e-18 Score=121.43 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcE-EEEEEcCHHHHHHHHHhcCCccccC--ceEEEEecCCC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGG 83 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~~~ 83 (270)
..|||+||+..+|+++|+++|++||+|..|.+... .+|| |||+|.++++|..|+..|||..|.| +.|+|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 35669999999999999999999999999988542 3687 9999999999999999999999988 99999999876
Q ss_pred C
Q 024262 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 3
No 165
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=2.8e-19 Score=128.56 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccc---eEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~---v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.+.++|||+|||+++|+++|+++|+.||. |..|.|..+ +.++|||||+|.++++|++||. ||+..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 56789999999999999999999999999 788888643 6789999999999999999999 99999999999999
Q ss_pred ecCC
Q 024262 79 LAHG 82 (270)
Q Consensus 79 ~~~~ 82 (270)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8754
No 166
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=2.1e-19 Score=116.48 Aligned_cols=72 Identities=22% Similarity=0.503 Sum_probs=66.8
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+|||+|||.++++++|+++|++||+|..+.+.. ++.++|||||+|.++++|.+|+. +++..|.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999998854 46789999999999999999999 6999999999999875
No 167
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.78 E-value=7.2e-19 Score=132.74 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+||..||+..|+|++|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 5679999999999999999999999999999999965 47789999999999999999999999999999999999987
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 65
No 168
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=9.9e-19 Score=120.96 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=69.5
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+.++|||+|||+++|+++|+++|+.| .|..|.|+. ++.++|||||+|.++++|++||. +|+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 899999965 46789999999999999999995 999999999999988754
No 169
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.77 E-value=9.5e-19 Score=116.74 Aligned_cols=73 Identities=29% Similarity=0.549 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcc----c-------ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccc
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
++++++|||+|||.++++++|+++|++| | .|.++.+..+ +|||||+|.++++|.+|+ .||+..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 8999998755 899999999999999999 89999999
Q ss_pred CceEEEEe
Q 024262 72 GCRLRVEL 79 (270)
Q Consensus 72 g~~l~v~~ 79 (270)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 170
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.3e-19 Score=126.02 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEE-EE--ecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-EL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|..||.|..+ .+ ..++.++|||||+|.+.++|.+||. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 467899999999999999999999999998763 33 3467889999999999999999999 9999999999999998
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 171
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=6.2e-19 Score=138.60 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++|||+|||..+|+++|+++|+.|| .|..|.|+. ++.++|||||+|.+.++|.+||..||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 568899999999999999999999999 999999965 567899999999999999999999999999999999999
Q ss_pred cCC
Q 024262 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 172
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=4e-19 Score=123.25 Aligned_cols=79 Identities=14% Similarity=0.098 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccc---eEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~---v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
..+.++|||+|||+++|+++|+++|+.||. |..|.|..+ +.++|||||+|.+.++|.+||. +|+..|+|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 367899999999999999999999999998 888988543 6789999999999999999999 9999999999999
Q ss_pred EecCC
Q 024262 78 ELAHG 82 (270)
Q Consensus 78 ~~~~~ 82 (270)
.++..
T Consensus 87 ~~a~~ 91 (107)
T 2lmi_A 87 YEINN 91 (107)
T ss_dssp EECCH
T ss_pred EECCH
Confidence 99864
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=8.5e-18 Score=118.39 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCCe--EEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcE-EEEEEcCHHHHHHHHHhcCCccccC--ceEEEEe
Q 024262 5 FSRT--IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~s~~--i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
++++ |||+||+..+++++|+++|++||.|..|.|... .|| |||+|.++++|..|+..|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 579999999999999999999999999998542 386 9999999999999999999999987 6999999
Q ss_pred cCCCC
Q 024262 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98764
No 174
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.8e-18 Score=122.40 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceE--EEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--DIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~--~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|.. ++.++|||||+|.++++|++||. +++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 467899999999999999999999999 566 888854 37789999999999999999999 588999999999988
Q ss_pred cCC
Q 024262 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 175
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.1e-19 Score=127.62 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
...++|||+|||+++|+++|+++|++|| |..|.|+. ++.++|||||+|.++++|++|| .+|+..|+|+.|.|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 66888854 3678999999999999999999 599999999999999887
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 176
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=8.9e-19 Score=123.73 Aligned_cols=79 Identities=19% Similarity=0.135 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccce----EEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEE
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v----~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
..+.++|||+|||+++|+++|+++|+.||.| ..|.|.. ++.++|||||+|.++++|++||.. |+..|+|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 3578999999999999999999999999975 5777754 577899999999999999999994 99999999999
Q ss_pred EEecCC
Q 024262 77 VELAHG 82 (270)
Q Consensus 77 v~~~~~ 82 (270)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 177
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=1.7e-18 Score=115.68 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=67.4
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+.++++|||+|||.++++++|+++|++||+|..|.|..+ ++|||||+|.+.++|++|+.. .+.+.|+.|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999998754 689999999999999865442 4566899999999876
Q ss_pred C
Q 024262 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 178
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=3e-18 Score=114.50 Aligned_cols=74 Identities=22% Similarity=0.460 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCc--cccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY--NFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~--~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||.++|+++|+++|++||.|.+|.|+.+ ++|||||+|.++++|.+ |++. .+.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 56899999999999999999999999999999999764 78999999999999984 3444 4569999999987
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
++
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 65
No 179
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=8.4e-20 Score=128.66 Aligned_cols=81 Identities=27% Similarity=0.339 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCcCHHHHHHHhhcccceEE--------EEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccc
Q 024262 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 3 ~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
..++++|||+|||..+++++|+++|+.||.|.. |.|.. ++.++|||||+|.+.++|.+|+..||+..|.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 367899999999999999999999999999998 77754 4678999999999999999999999999999
Q ss_pred CceEEEEecCCC
Q 024262 72 GCRLRVELAHGG 83 (270)
Q Consensus 72 g~~l~v~~~~~~ 83 (270)
|++|.|.++...
T Consensus 84 g~~l~V~~a~~~ 95 (116)
T 2lcw_A 84 GNPIKVSFATRR 95 (116)
Confidence 999999998865
No 180
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=4.6e-18 Score=122.71 Aligned_cols=120 Identities=15% Similarity=0.099 Sum_probs=74.0
Q ss_pred cEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024262 46 CYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (270)
.++|++|.+...|..|+..+++....|..- +.+ +..........
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~-----------------------------------~~~~~~~~~~~ 48 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSY-----------------------------------GRPPPDVEGMT 48 (135)
T ss_dssp -------------------------------CCS-----------------------------------CCSCSSGGGCC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CCc-----------------------------------CCCCCCCCCCC
Confidence 467888888899999999888765444320 000 01122334568
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|||..+. ++.|.|..+
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~l~V~~a 124 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRVQMA 124 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS----SSCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 999999999999999999999999999999987653 369999999999999999999999998 999999998
Q ss_pred CCCC
Q 024262 202 DRSP 205 (270)
Q Consensus 202 ~~~~ 205 (270)
+...
T Consensus 125 ~~~~ 128 (135)
T 2lea_A 125 RYGR 128 (135)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7533
No 181
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.74 E-value=5.5e-18 Score=117.45 Aligned_cols=81 Identities=33% Similarity=0.615 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
....+|||+|||..+++++|+++|+.|| .|..+.+......|||||+|.+.++|++|++.|||..+. |+.|.|+.
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR----GSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET----TEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 3458999999999999999999999999 899999876556689999999999999999999999999 99999999
Q ss_pred CCCCCC
Q 024262 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
+...+.
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 875443
No 182
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=4.6e-17 Score=114.35 Aligned_cols=79 Identities=18% Similarity=0.326 Sum_probs=72.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|||..+. ++.|.|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH----GKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS----SSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEE
Confidence 457999999999999999999999999999999998763 269999999999999999999999998 9999999
Q ss_pred cCCCCC
Q 024262 200 RYDRSP 205 (270)
Q Consensus 200 ~~~~~~ 205 (270)
.++...
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 987544
No 183
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.7e-17 Score=112.77 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=73.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+..+|||+|||..+++++|+++|+.||.|..+.+..+.. .+||||+|.+.++|++|++.||+..+. ++.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 3445668999999999999999999999999999999977654 479999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024262 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.+++...
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99987543
No 184
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=2e-18 Score=118.78 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4678999999999999999999999999999999965 46678999999999999999999 9999999999999987
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 55
No 185
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=8.5e-18 Score=118.84 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|| ++++++|+++|+.||.|..|.+. .++|||||+|.+.++|.+|+..|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 57899999996 79999999999999999999986 45899999999999999999999999999999999999865
No 186
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=116.60 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.++++|||+|||.++++++|+++|++||+|. +.++.+ +.++|||||+|.++++|++||..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 6789999999999999999999999999999 766442 5789999999999999999999883 255555555
Q ss_pred Eec
Q 024262 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 543
No 187
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.73 E-value=1e-16 Score=112.58 Aligned_cols=83 Identities=23% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|+.||.|..+.++.+..+ +||||+|.+.++|++|++.||+..+. ++
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 95 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----MK 95 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 34455689999999999999999999999999999999988644 59999999999999999999999998 99
Q ss_pred eeeeecCCCCC
Q 024262 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|.|.+++...
T Consensus 96 ~l~V~~a~~~~ 106 (115)
T 2cpz_A 96 RLKVQLKRSKN 106 (115)
T ss_dssp ECEEECCCCSC
T ss_pred EEEEEEcCCCC
Confidence 99999987443
No 188
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=112.77 Aligned_cols=75 Identities=27% Similarity=0.409 Sum_probs=70.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
+.+|||+|||..+|+++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. |+.|.|.
T Consensus 19 gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~l~V~ 94 (99)
T 4fxv_A 19 GTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----SKTIKVS 94 (99)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEE
Confidence 478999999999999999999999999999999987654 59999999999999999999999998 9999999
Q ss_pred cCC
Q 024262 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
+++
T Consensus 95 ~Ak 97 (99)
T 4fxv_A 95 YAR 97 (99)
T ss_dssp ECC
T ss_pred Eee
Confidence 874
No 189
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=2.1e-17 Score=113.58 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=71.3
Q ss_pred CCCCCeEEEcCCCC-----CcCHHHHHHHhhcccceEEEEEecC----CCCCcEEEEEEcCHHHHHHHHHhcCCccccCc
Q 024262 3 GRFSRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 3 ~~~s~~i~V~nlp~-----~~t~~~l~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
..++++|+|.||.. +.++++|+++|++||+|.+|.|..+ +.++|||||+|.++++|.+|+..|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 47899999999963 2478999999999999999999653 46799999999999999999999999999999
Q ss_pred eEEEEecCC
Q 024262 74 RLRVELAHG 82 (270)
Q Consensus 74 ~l~v~~~~~ 82 (270)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 190
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.6e-17 Score=118.73 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=72.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|+++|+.||.|..|.++.+.. .|||||+|.+.++|.+|++.|||..+. ++.|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 94 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 94 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CeEE
Confidence 34568999999999999999999999999999999987753 369999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024262 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|.++....
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999986433
No 191
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.72 E-value=1.9e-17 Score=123.88 Aligned_cols=136 Identities=14% Similarity=0.127 Sum_probs=73.0
Q ss_pred EEEcCHHHHHHHHHhcCCcccc--CceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceE
Q 024262 50 VEFENARDAEDAIRGRDGYNFD--GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRV 127 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (270)
.+|.+.++|..|+..|++.... |+.+.+....... ...+.... ........+.+....+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~---------~~~~~~~~------~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA---------IHSYERVR------NEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc---------ccCccccc------cCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999999886554 4444443321110 00000000 00000011112233456899
Q ss_pred EEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 128 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 128 ~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
||+|||..+++++|.++|..||.|..|.++.+..+ |||||+|.+.++|..|+..|||..|. ++.|.|.++..
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~~ 151 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTIQVDWCFV 151 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEESEE
T ss_pred EEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEEEecC
Confidence 99999999999999999999999999999987543 69999999999999999999999998 99999999864
Q ss_pred C
Q 024262 204 S 204 (270)
Q Consensus 204 ~ 204 (270)
.
T Consensus 152 ~ 152 (165)
T 1rk8_A 152 K 152 (165)
T ss_dssp C
T ss_pred C
Confidence 3
No 192
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.4e-17 Score=123.32 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|++|.|.++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5688999999999999999999999999999999964 4678999999999999999999999999999999999998
Q ss_pred C
Q 024262 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 193
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.7e-17 Score=129.50 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..++|||+|||..+|+++|+++|+.||.|..+.|..+ +.++|||||+|.+.++|.+||..|||..|+|++|.|.++..+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4678999999999999999999999999999999653 456899999999999999999999999999999999999764
No 194
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=3.3e-17 Score=128.09 Aligned_cols=80 Identities=26% Similarity=0.474 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4578999999999999999999999999999999965 4677999999999999999999999999999999999999
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 876
No 195
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-16 Score=108.53 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=74.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
......+|||+|||..+++++|+++|+.||.|..|.++.+..+ +||||+|.+.++|.+|+..||+..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL----GKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC----CCeEE
Confidence 3445689999999999999999999999999999999987543 79999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024262 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999875443
No 196
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-17 Score=116.16 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=68.9
Q ss_pred CCeEEEcCC----CCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcC----HHH----HHHHHH--hcCCc
Q 024262 6 SRTIYVGNL----PSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFEN----ARD----AEDAIR--GRDGY 68 (270)
Q Consensus 6 s~~i~V~nl----p~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~----~~~----a~~A~~--~l~~~ 68 (270)
.+.|||+|| |+.+++++|+++|+.||+|.++.+.. |+.++|||||+|.+ +++ |.+|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 479999999 99999999999999999999999965 57889999999996 444 788988 78999
Q ss_pred cccCceEEEEecCCC
Q 024262 69 NFDGCRLRVELAHGG 83 (270)
Q Consensus 69 ~~~g~~l~v~~~~~~ 83 (270)
.|+|++|.|.+....
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999987754
No 197
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=9.7e-17 Score=110.42 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=74.0
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeC--CCCcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~--~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
....+..+|||+|||..+++++|+++|+.||.|..+.++.+ ...+||||+|.+.++|.+|++.|||..+. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA----TKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 33446789999999999999999999999999999999987 22369999999999999999999999998 9999
Q ss_pred eeecCCCCCC
Q 024262 197 TVKRYDRSPS 206 (270)
Q Consensus 197 ~v~~~~~~~~ 206 (270)
.|..+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999875443
No 198
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.71 E-value=4e-16 Score=109.56 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=75.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|..||.|..|.++.+... |||||+|.+.++|++|++.|+|..+. ++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GR 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET----TE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 34456689999999999999999999999999999999987543 59999999999999999999999998 99
Q ss_pred eeeeecCCCCCCC
Q 024262 195 RITVKRYDRSPSR 207 (270)
Q Consensus 195 ~i~v~~~~~~~~r 207 (270)
.|.|.++......
T Consensus 86 ~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 86 QIRTNWATRKPPA 98 (115)
T ss_dssp ECEEEESSCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999755443
No 199
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-16 Score=108.53 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=74.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--CcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.......+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|.+|+..||+..+. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3345568999999999999999999999999999999987754 479999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024262 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999987543
No 200
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=3.3e-16 Score=109.85 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=73.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..+..+|||+|||..+++++|+++|..||.|..+.++.+..+ +||||+|.+.++|++|++.||+..+. ++.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF----DRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC----CCEEE
Confidence 345689999999999999999999999999999999987653 59999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024262 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99986543
No 201
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.71 E-value=3.2e-17 Score=123.91 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 457899999999999999999999999999887 667888999999999999999999999999999999999998765
No 202
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.2e-16 Score=108.04 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=73.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ +||||+|.+.++|.+|++.|||..+. ++.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3445689999999999999999999999999999999987733 69999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024262 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+...+
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999986543
No 203
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.8e-16 Score=107.83 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=71.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
......+|||+|||..+++++|+++|+.||.|. +.++.+...|||||+|.+.++|+.|++.|||..+. ++.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG----TDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS----SSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 344568999999999999999999999999997 67777777789999999999999999999999998 9999999
Q ss_pred cCCCC
Q 024262 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
.+...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 88643
No 204
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.70 E-value=1e-16 Score=104.14 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=68.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..-|||+||++.+++++|+++|.+||+|..+++.. ..|||||+|.+.++|.+|++.||+..+. ++.|.|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLA----NTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEET----TEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEEEEECC
Confidence 36899999999999999999999999999999877 3589999999999999999999999999 9999998873
No 205
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-16 Score=109.02 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=74.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+... |||||+|.+.++|.+|++.|||..+. ++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HLI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 3455689999999999999999999999999999999987643 59999999999999999999999998 999
Q ss_pred eeeecCCCCCC
Q 024262 196 ITVKRYDRSPS 206 (270)
Q Consensus 196 i~v~~~~~~~~ 206 (270)
|.|.++.....
T Consensus 87 l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 LNVEWAKPSTN 97 (103)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999875443
No 206
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=108.76 Aligned_cols=75 Identities=11% Similarity=0.100 Sum_probs=68.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC--ccccCccccceeeeec
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~~~~~~~~i~v~~ 200 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+ .|||||+|++.++|..|++.|++ ..+. |+.|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~----Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEET----TEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEEEE
Confidence 4589999999999999999999999999999999986 47999999999999999998864 6677 99999998
Q ss_pred CCC
Q 024262 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
++.
T Consensus 89 A~~ 91 (105)
T 1sjq_A 89 SNH 91 (105)
T ss_dssp CSS
T ss_pred cCC
Confidence 864
No 207
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.8e-16 Score=109.07 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|++|++.|||..+. ++.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 84 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD----GRE 84 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT----TBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 344568999999999999999999999999999999988754 369999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024262 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..++...
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dnm_A 85 LRVQVARYGR 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEECCcCC
Confidence 9999987543
No 208
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=111.58 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=70.2
Q ss_pred CCCCeEEEcCCCCCc-----------CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccC
Q 024262 4 RFSRTIYVGNLPSDI-----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~-----------t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.++++|+|.||.... ++++|+++|++||+|..|.| .+..++|||||+|.++++|.+|+..|||..|+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 579999999994443 26899999999999999966 555689999999999999999999999999999
Q ss_pred ceEEEEecCCC
Q 024262 73 CRLRVELAHGG 83 (270)
Q Consensus 73 ~~l~v~~~~~~ 83 (270)
++|.|.++.+.
T Consensus 92 r~l~v~~a~~~ 102 (112)
T 2dit_A 92 RQITAQAWDGT 102 (112)
T ss_dssp EECEEEECCSC
T ss_pred cEEEEEEeCCC
Confidence 99999998765
No 209
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.70 E-value=3.3e-16 Score=108.11 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccc---ce
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR---GR 195 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~---~~ 195 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ +||||+|.+.++|.+|++.|||..+. + +.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----gg~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM----PGASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC----TTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC----CCCCcc
Confidence 45689999999999999999999999999999999988643 69999999999999999999999988 5 89
Q ss_pred eeeecCCCCCCC
Q 024262 196 ITVKRYDRSPSR 207 (270)
Q Consensus 196 i~v~~~~~~~~r 207 (270)
|.|..++....+
T Consensus 89 l~V~~a~~~~~~ 100 (105)
T 2dnh_A 89 LVVKFADTDKES 100 (105)
T ss_dssp CEEEESCSSCCC
T ss_pred EEEEECccCccc
Confidence 999998754443
No 210
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=9.6e-17 Score=111.43 Aligned_cols=77 Identities=21% Similarity=0.120 Sum_probs=71.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~----gr~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM----GNIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEE
Confidence 3479999999999999999999999999999999988764 69999999999999999999999999 999999
Q ss_pred ecCCC
Q 024262 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..+..
T Consensus 81 ~~a~~ 85 (110)
T 3s8s_A 81 QLDIK 85 (110)
T ss_dssp EECST
T ss_pred EECCC
Confidence 98854
No 211
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=4.2e-17 Score=127.55 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCc---------CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc----
Q 024262 4 RFSRTIYVGNLPSDI---------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---- 70 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~---------t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---- 70 (270)
.++++|||+||+..+ ++++|+++|++||+|.+|.|+.. +|||||+|.+.++|+.|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 568999999999998 79999999999999999999764 89999999999999999999999999
Q ss_pred --------cCceEEEEecCCC
Q 024262 71 --------DGCRLRVELAHGG 83 (270)
Q Consensus 71 --------~g~~l~v~~~~~~ 83 (270)
.|+.|.|.++...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999865
No 212
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=5.9e-17 Score=124.87 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 5679999999999999999999999999999999954 4677999999999999999999999999999999999999
Q ss_pred CCC
Q 024262 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 213
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.70 E-value=8.3e-17 Score=112.94 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=70.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.|+|..+. |+.|.|..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 358999999999999999999999999999999887653 69999999999999999999999998 999999988
Q ss_pred CC
Q 024262 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
..
T Consensus 81 ~~ 82 (115)
T 4f25_A 81 KS 82 (115)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 214
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=4.1e-17 Score=122.95 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=71.2
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEec
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 4677899999999999999999999999999999999986
No 215
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.6e-16 Score=107.44 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=71.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|.+|++.||+..+. ++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 87 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF----GRV 87 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET----TEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 344568999999999999999999999999999999988755 369999999999999999999999998 999
Q ss_pred eeeecCC
Q 024262 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|.+++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9998763
No 216
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.1e-16 Score=107.64 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=73.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|++.||+..+. ++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY----GKP 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS----SCB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 3445689999999999999999999999999999999887633 69999999999999999999999998 999
Q ss_pred eeeecCCCC
Q 024262 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|..+...
T Consensus 87 l~v~~a~~~ 95 (105)
T 1x5u_A 87 IRVNKASAH 95 (105)
T ss_dssp CEEEETTTT
T ss_pred EEEEECCCC
Confidence 999998643
No 217
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-16 Score=107.80 Aligned_cols=80 Identities=25% Similarity=0.368 Sum_probs=72.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|.+|++.||+..+. ++.|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD----GRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT----SCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 3458999999999999999999999999999999988754 369999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024262 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..+....
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 99986543
No 218
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=107.55 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=72.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.......+|||+|||..+++++|+++|+.||+|..+.++.+..+ +||||+|.+.++|.+|++.|||..+. ++.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY----GRP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CCE
Confidence 34456689999999999999999999999999999999987653 59999999999999999999999998 999
Q ss_pred eeeecCC
Q 024262 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..++
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9998874
No 219
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=5e-16 Score=107.62 Aligned_cols=84 Identities=18% Similarity=0.384 Sum_probs=74.0
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-----CCcEEEEEecChhhHHHHHHhc-CCccccCccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWA 192 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l-~g~~~~~~~~ 192 (270)
.......+|||+|||..+++++|+++|+.||.|..|.++.+. ..|||||+|.+.++|.+|+..| |+..+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~---- 85 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY---- 85 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS----
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC----
Confidence 344566899999999999999999999999999999998772 2369999999999999999999 999998
Q ss_pred cceeeeecCCCCCC
Q 024262 193 RGRITVKRYDRSPS 206 (270)
Q Consensus 193 ~~~i~v~~~~~~~~ 206 (270)
++.|.|.++.....
T Consensus 86 g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 GRRLVLEWADSEVT 99 (107)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CCEEEEEeCCCCCC
Confidence 99999999875443
No 220
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=109.57 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=68.9
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc--ccCccccceeee
Q 024262 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~--~~~~~~~~~i~v 198 (270)
.+..+|||+|||. .+++++|+++|+.||.|..+.++.++ +||||+|++.++|..|++.|++.. +. |+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVF----GKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceEC----CcEEEE
Confidence 3568999999999 99999999999999999999998765 699999999999999999998754 66 999999
Q ss_pred ecCCC
Q 024262 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.+++.
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99874
No 221
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=4e-17 Score=122.38 Aligned_cols=78 Identities=22% Similarity=0.472 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|++ +++..|+|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999854 47889999999999999999999 89999999999999987
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 222
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.8e-16 Score=105.27 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=72.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|.+|++.|||..+. ++.|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA----GRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----SSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 457999999999999999999999999999999998754 369999999999999999999999998 999999
Q ss_pred ecCCCCCC
Q 024262 199 KRYDRSPS 206 (270)
Q Consensus 199 ~~~~~~~~ 206 (270)
..+.....
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99875443
No 223
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=4.7e-16 Score=106.17 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=72.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|..|++.|||..+. ++.|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 82 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----GRMLHV 82 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----SCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEE
Confidence 458999999999999999999999999999999987763 369999999999999999999999998 999999
Q ss_pred ecCCCCCC
Q 024262 199 KRYDRSPS 206 (270)
Q Consensus 199 ~~~~~~~~ 206 (270)
..+.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99875444
No 224
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.8e-16 Score=108.27 Aligned_cols=84 Identities=15% Similarity=0.398 Sum_probs=73.5
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-----CcEEEEEecChhhHHHHHHhcCCccccCccc
Q 024262 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 118 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
..+..+..+|||+|||..+++++|+++|+.|| |..+.++.+.. .|||||+|.+.++|.+|+ .||+..+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---- 82 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---- 82 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET----
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC----
Confidence 33445668999999999999999999999999 99999987754 369999999999999999 99999998
Q ss_pred cceeeeecCCCCCCC
Q 024262 193 RGRITVKRYDRSPSR 207 (270)
Q Consensus 193 ~~~i~v~~~~~~~~r 207 (270)
++.|.|..+.....+
T Consensus 83 g~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 83 NKRIRVDVADQAQDK 97 (104)
T ss_dssp TEECEEEECCCCCCC
T ss_pred CcEEEEEEccCCCCC
Confidence 999999998754443
No 225
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6e-16 Score=107.94 Aligned_cols=83 Identities=11% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcC------CccccC
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLD------DTEFRN 189 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~------g~~~~~ 189 (270)
...+..+|||+|||..+++++|+++|..||.|..|.++.+.. .|||||+|.+.++|.+|++.|| +..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 344568999999999999999999999999999999987754 3699999999999999999999 99988
Q ss_pred ccccceeeeecCCCCCC
Q 024262 190 PWARGRITVKRYDRSPS 206 (270)
Q Consensus 190 ~~~~~~i~v~~~~~~~~ 206 (270)
++.|.|..+.....
T Consensus 90 ---g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 ---GRQLKVDLAVTRDE 103 (111)
T ss_dssp ---SCEEEEECCCCCCC
T ss_pred ---CEEEEEEECCCCcc
Confidence 99999999875433
No 226
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.8e-16 Score=105.80 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=72.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
....+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ +||||+|.+.++|.+|++.|||..+. ++
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GR 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 33456789999999999999999999999999999999987653 59999999999999999999999998 99
Q ss_pred eeeeecCC
Q 024262 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|..++
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998875
No 227
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1e-16 Score=123.36 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||.++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. ++..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999965 467899999999999999999994 8999999999999998
Q ss_pred CCCC
Q 024262 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7643
No 228
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.6e-16 Score=106.05 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=72.0
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 123 SEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...+|||+|||..+++++|+ ++|+.||.|..+.++.+.. .+||||+|.+.++|.+|++.|||..+. ++.|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~----gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG----SKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 45799999999999999999 9999999999999987654 479999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024262 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..++...
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99986543
No 229
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.7e-16 Score=103.43 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=70.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.+++ +||||+|.+.++|.+|++.||+..+. ++.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYKLH----GVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET----TEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhcCCccC----CcEEEEEEC
Confidence 3458999999999999999999999999999999983 69999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024262 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
.....
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 75443
No 230
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.4e-16 Score=105.48 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=71.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|++ |++..+. ++.|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM----GKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC----CeEEE
Confidence 4558999999999999999999999999999999988754 3699999999999999999 9999998 99999
Q ss_pred eecCCCCCC
Q 024262 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999875443
No 231
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.4e-16 Score=119.53 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccC--ceEEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVE 78 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~ 78 (270)
.++++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999855 46678999999999999999999999999987 999998
Q ss_pred ec
Q 024262 79 LA 80 (270)
Q Consensus 79 ~~ 80 (270)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 232
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=2.9e-16 Score=112.29 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=72.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..|. ++.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 345568999999999999999999999999999999987753 369999999999999999999999998 999
Q ss_pred eeeecCCCC
Q 024262 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|.++...
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 999988643
No 233
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.8e-16 Score=121.33 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=70.1
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCCC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++|||+|||.++++++|.++|++||+|..|.|.. ++.++|||||+|.++++|.+|+..+ +..|+|+.|.|.+....
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 58999999999999999999999999999999965 4677899999999999999999855 56999999999998765
No 234
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.67 E-value=1.5e-16 Score=120.05 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=70.2
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccc---CceEEEEe
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRVEL 79 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~~ 79 (270)
+.++|||+|||..+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+. |++|.|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 678999999999999999999999999999999965 4667899999999999999999999998776 49999998
Q ss_pred cC
Q 024262 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 235
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.67 E-value=2.6e-16 Score=106.09 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=68.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc--ccCccccceeeee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~--~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|.++|+.||.|..+.+++.+ |+|||+|++.++|..|++.|++.. +. |+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k--g~AFVef~~~~~A~~Av~~ln~~~~~i~----Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK--RQALVEFEDVLGACNAVNYAADNQIYIA----GHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHHHSCEEET----TEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHhcCCCceeC----CcEEEEE
Confidence 456899999999999999999999999999999998653 799999999999999999999876 55 9999999
Q ss_pred cCCC
Q 024262 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+++.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 8864
No 236
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=7.1e-16 Score=105.67 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=68.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc--ccCccccceeee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITV 198 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~--~~~~~~~~~i~v 198 (270)
..+..+|||+|||..+++++|+++|++||.|..+.++.+ .|||||+|++.++|.+|++.|++.. +. |+.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~----Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIA----GQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSS----SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEE
Confidence 345689999999999999999999999999999998875 4799999999999999999987654 66 999999
Q ss_pred ecCCC
Q 024262 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99864
No 237
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.1e-16 Score=107.65 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=72.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|.+|++.||+..+. ++.|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 3558999999999999999999999999999999987743 369999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024262 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999875443
No 238
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=2.2e-16 Score=109.02 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=69.2
Q ss_pred CCCCCcceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC--ccccCccccce
Q 024262 119 ISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGR 195 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~~~~~~~~ 195 (270)
....+..+|||+|||.. +++++|+++|+.||.|..+.++.. .|||||+|++.++|..|++.|++ ..+. |+.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~----Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQ----GRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSS----SSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEE
Confidence 34556789999999998 999999999999999999999865 47999999999999999998865 4466 999
Q ss_pred eeeecCCC
Q 024262 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|.|.++..
T Consensus 94 l~V~~a~~ 101 (112)
T 1x4f_A 94 VKVDLSEK 101 (112)
T ss_dssp CEEEEECS
T ss_pred EEEEECcc
Confidence 99998864
No 239
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=4.2e-16 Score=106.81 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=70.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCCC
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
++|||+|||..+++++|+++|+.||.|..+.++.+ ..+||||+|.+.++|.+|++.|+|..+. ++.|.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEEEEccCC
Confidence 37999999999999999999999999999999988 5579999999999999999999999988 999999998754
Q ss_pred C
Q 024262 205 P 205 (270)
Q Consensus 205 ~ 205 (270)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 240
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.3e-16 Score=104.69 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=69.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC--CccccCccccceee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~--g~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+ .|||||+|++.++|..|++.|+ +..+. |+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR----NQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET----TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CcEEE
Confidence 3445689999999999999999999999999999998876 4799999999999999999875 55677 99999
Q ss_pred eecCCC
Q 024262 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|.++..
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 999864
No 241
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.67 E-value=8.9e-16 Score=106.14 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccc---cCccc
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEF---RNPWA 192 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~---~~~~~ 192 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|++.||+..+ .
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~---- 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM---- 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC----
Confidence 344568999999999999999999999999999999988754 36999999999999999999999887 5
Q ss_pred cceeeeecCCCCC
Q 024262 193 RGRITVKRYDRSP 205 (270)
Q Consensus 193 ~~~i~v~~~~~~~ 205 (270)
++.|.|..+....
T Consensus 85 g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 85 NRPIQVKPADSES 97 (106)
T ss_dssp SSCCEEEECCCCS
T ss_pred CceEEEEECCccc
Confidence 8999999987543
No 242
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=1.1e-15 Score=105.12 Aligned_cols=81 Identities=15% Similarity=0.276 Sum_probs=72.0
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.+..+..+|||+|||..+++++|+++|+.|| |..+.++.+..+ |||||+|.+.++|.+|+ .||+..+. ++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG----DR 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET----TE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC----Ce
Confidence 3445578999999999999999999999997 999999988653 59999999999999999 89999998 99
Q ss_pred eeeeecCCCCC
Q 024262 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|.|..+....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dng_A 84 SLRVDIAEGRK 94 (103)
T ss_dssp ECEEEECCCCC
T ss_pred EEEEEEecCCC
Confidence 99999987543
No 243
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-15 Score=103.90 Aligned_cols=80 Identities=16% Similarity=0.282 Sum_probs=70.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.+..+ .+||||+|.+.++|++|++.||+..+.+ .++.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~--~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGG--PDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSS--SSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCC--CCcEEEEEEC
Confidence 34589999999999999999999999999999999876 4699999999999999999999988762 2688999988
Q ss_pred CCCC
Q 024262 202 DRSP 205 (270)
Q Consensus 202 ~~~~ 205 (270)
+..+
T Consensus 91 ~~~~ 94 (97)
T 1why_A 91 KSGP 94 (97)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 244
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=9.2e-16 Score=104.67 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=71.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+..+|||+|||..+++++|+++|+.||.|..+.+..+ .+||||+|.+.++|.+|++.|||..+. ++.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLR----GKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBT----TBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeC----CceEEEEE
Confidence 345689999999999999999999999999999999876 479999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024262 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 87543
No 245
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.67 E-value=3e-16 Score=104.67 Aligned_cols=77 Identities=14% Similarity=0.302 Sum_probs=70.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-----CCcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+. ..|||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeEEEE
Confidence 4799999999999999999999999999999998766 4479999999999999999999999998 999999
Q ss_pred ecCCCC
Q 024262 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..+...
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 988643
No 246
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=7e-16 Score=103.35 Aligned_cols=77 Identities=23% Similarity=0.419 Sum_probs=70.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+ ||||+|.+.++|..|++.|||..+. ++.|.|..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVK----GKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 34589999999999999999999999999999999864 9999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024262 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
.....
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75433
No 247
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=3.7e-16 Score=103.54 Aligned_cols=76 Identities=21% Similarity=0.277 Sum_probs=69.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|||..+. |+.|.|
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 81 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIRV 81 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEE
Confidence 4589999999999999999999999999999999776433 69999999999999999999999998 999999
Q ss_pred ecCC
Q 024262 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..++
T Consensus 82 ~~ak 85 (85)
T 3mdf_A 82 NLAK 85 (85)
T ss_dssp EECC
T ss_pred EEcC
Confidence 8763
No 248
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.66 E-value=4.5e-16 Score=103.60 Aligned_cols=77 Identities=22% Similarity=0.298 Sum_probs=69.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|||..+. ++.|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 80 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQIRT 80 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEE
Confidence 4579999999999999999999999999999999987543 59999999999999999999999998 999999
Q ss_pred ecCCC
Q 024262 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..++.
T Consensus 81 ~~a~~ 85 (87)
T 3bs9_A 81 NWATR 85 (87)
T ss_dssp EEEC-
T ss_pred EecCC
Confidence 98764
No 249
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.66 E-value=1.5e-15 Score=104.39 Aligned_cols=76 Identities=11% Similarity=0.202 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+..+|||+|||..+++++|+++|+.||.|..+.+++ +||||+|.+.++|.+|++.||+..+. ++.|.|..+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLE----GENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccC----CCEEEEEEcC
Confidence 458999999999999999999999999999999885 49999999999999999999999998 9999999987
Q ss_pred CCCC
Q 024262 203 RSPS 206 (270)
Q Consensus 203 ~~~~ 206 (270)
....
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 5443
No 250
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.1e-15 Score=107.75 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=71.2
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|++.|||..+. ++
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG----TK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET----TE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3445578999999999999999999999999999999987754 369999999999999999999999998 99
Q ss_pred eeeeecCC
Q 024262 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|++++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99988763
No 251
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5e-16 Score=108.42 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=69.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC--ccccCccccceee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g--~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||+.+++++|+++|+.||.|..+.++.+ .|||||+|++.++|.+|++.|++ ..+. |+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~----Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBT----TBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CeEEE
Confidence 3445689999999999999999999999999999999986 37999999999999999999885 4677 99999
Q ss_pred eecCCC
Q 024262 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|.+++.
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999864
No 252
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.2e-15 Score=102.69 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+ ||||+|.+.++|.+|+..|||..+. ++.|.|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ----GKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeC----CcEEEEEE
Confidence 345689999999999999999999999999999999864 9999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024262 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 96443
No 253
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.66 E-value=2.3e-15 Score=104.77 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=68.2
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 122 HSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~V~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
....+|||+|||.. +++++|+++|+.||.|..+.+. .+||||+|.+.++|..|++.|++..+. ++.|.|..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH----KGYAFVQYSNERHARAAVLGENGRVLA----GQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE----TTEEEEECSSSHHHHHHHHHHTTCEET----TEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 34579999999999 9999999999999999999983 369999999999999999999999998 99999999
Q ss_pred CCC
Q 024262 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 254
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-15 Score=104.05 Aligned_cols=80 Identities=19% Similarity=0.203 Sum_probs=72.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHh-cCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCcc-ccCcccccee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTE-FRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~-~~~~~~~~~i 196 (270)
.+..+|||+|||..+++++|+++|+. ||.|..+.++.+..+ |||||+|.+.++|.+|++.|++.. +. ++.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~----g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG----SKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS----SSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC----CEeE
Confidence 45589999999999999999999999 999999999987633 599999999999999999999999 88 8999
Q ss_pred eeecCCCCC
Q 024262 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+....
T Consensus 83 ~v~~a~~~~ 91 (104)
T 2dhg_A 83 RLSVAIPKA 91 (104)
T ss_dssp CCCBCCCCC
T ss_pred EEEEccCCC
Confidence 999986443
No 255
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-16 Score=106.69 Aligned_cols=75 Identities=15% Similarity=0.300 Sum_probs=66.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcC-CccccCccccceeee
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLD-DTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~-g~~~~~~~~~~~i~v 198 (270)
.+|||+|||..+|+++|+++|+.|| .|..|.++.+..+ |||||+|.+.++|.+|++.++ +..+. |+.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEEEE
Confidence 6899999999999999999999999 7999999877543 699999999999999999874 55677 999999
Q ss_pred ecCCC
Q 024262 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 78 ~~a~~ 82 (91)
T 2lxi_A 78 HYSDP 82 (91)
T ss_dssp ECCCS
T ss_pred EEcCC
Confidence 98864
No 256
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=6.7e-16 Score=105.17 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=71.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-------CcEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-------~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|.+|++.|||..+. ++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD----GHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 347999999999999999999999999999999987654 269999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024262 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..+....
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999986533
No 257
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=6.2e-16 Score=104.95 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=71.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
+..+|||+|||..+++++|+++|+.||.|..+ .++.+.. .+||||+|.+.++|.+|++.|||..+. ++.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----NRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 45899999999999999999999999999999 8888743 369999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024262 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999875443
No 258
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=7.4e-16 Score=104.55 Aligned_cols=78 Identities=21% Similarity=0.320 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEE-EEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
....+|||+|||..+++++|+++|..||.|..+ .++.+..++.|||+|.+.++|..|+..|||..+. ++.|.|..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~~ 88 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE----NFTLKVAY 88 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEEE
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEE
Confidence 446899999999999999999999999999999 5888887778999999999999999999999998 99999998
Q ss_pred CCC
Q 024262 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 89 a~~ 91 (96)
T 2e44_A 89 IPD 91 (96)
T ss_dssp CCC
T ss_pred cCc
Confidence 864
No 259
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-16 Score=107.53 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=73.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCee--------EEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccc
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--------FAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~ 187 (270)
......+|||+|||..+++++|+++|+.||.|. .+.++.+.. .|||||+|.+.++|.+|++.|||..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 344568999999999999999999999999998 688888744 36999999999999999999999999
Q ss_pred cCccccceeeeecCCCCCC
Q 024262 188 RNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 188 ~~~~~~~~i~v~~~~~~~~ 206 (270)
. ++.|.|..++....
T Consensus 91 ~----g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 Q----GSKLKVSLARKKPP 105 (113)
T ss_dssp T----TEECEEECSSCCCC
T ss_pred C----CCEEEEEECCCCCC
Confidence 8 99999999875443
No 260
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-15 Score=105.94 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=72.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+ .+||||+|.+.++|..|+..|+|..+. ++.|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIE----GHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEET----TEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEEC----CcEEEEEec
Confidence 45689999999999999999999999999999999887 479999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024262 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
+..+.
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75443
No 261
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=3.1e-16 Score=117.37 Aligned_cols=76 Identities=30% Similarity=0.576 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCce--EEEEe
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--LRVEL 79 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--l~v~~ 79 (270)
+.++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+. |.|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999854 4667899999999999999999999999999964 88877
Q ss_pred c
Q 024262 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 262
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.66 E-value=1.9e-16 Score=106.65 Aligned_cols=82 Identities=12% Similarity=0.127 Sum_probs=69.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCC--eeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
....+|||+|||+.+|+++|+++|+.||. +..|.++.++.+ |||||+|.+.++|.+|++.|||....-...|+.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34579999999999999999999999995 668888887653 699999999999999999999975222223999
Q ss_pred eeeecCCC
Q 024262 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|.|++++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99998864
No 263
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.8e-15 Score=104.37 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=72.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..|.++.+..+ |||||+|.+.++|.+|+.. ++..+. ++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD----GRN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC----CEE
Confidence 3456689999999999999999999999999999999988654 5999999999999999999 999998 999
Q ss_pred eeeecCCCC
Q 024262 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|..+...
T Consensus 87 l~V~~a~~~ 95 (105)
T 2dh8_A 87 IDPKPCTPR 95 (105)
T ss_dssp EBCCCSCCS
T ss_pred EEEEEccCC
Confidence 999988643
No 264
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=9.4e-16 Score=101.57 Aligned_cols=76 Identities=17% Similarity=0.250 Sum_probs=68.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhc-CCccccCccccceeeee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l-~g~~~~~~~~~~~i~v~ 199 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+. +||||+|.+.++|..|+..| ++..+. |+.|.|+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k--g~afV~f~~~~~A~~a~~~l~~~~~~~----g~~l~v~ 82 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ--QCAFIQFATRQAAEVAAEKSFNKLIVN----GRRLNVK 82 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHTTTTTCEET----TEECCEE
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC--CEEEEEECCHHHHHHHHHHhcCCeeEC----CCEEEEE
Confidence 3456899999999999999999999999999999998753 69999999999999999999 998888 8999988
Q ss_pred cCC
Q 024262 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
+++
T Consensus 83 ~ak 85 (85)
T 2ytc_A 83 WGR 85 (85)
T ss_dssp ECC
T ss_pred ecC
Confidence 763
No 265
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.9e-15 Score=106.22 Aligned_cols=79 Identities=19% Similarity=0.212 Sum_probs=71.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|++|++.|++ .+. ++.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~----g~~ 87 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID----GRK 87 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC----CEE
Confidence 345568999999999999999999999999999999988754 36999999999999999999998 777 999
Q ss_pred eeeecCCC
Q 024262 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|.|..+..
T Consensus 88 l~V~~a~~ 95 (116)
T 2cqd_A 88 ANVNLAYL 95 (116)
T ss_dssp CEEEESTT
T ss_pred EEEEEccc
Confidence 99999863
No 266
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.65 E-value=1.6e-15 Score=102.01 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=70.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--CcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|.+|++.||+..+. ++.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS----GREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT----TBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 3458999999999999999999999999999999987532 269999999999999999999999998 9999999
Q ss_pred cCCCC
Q 024262 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
.++..
T Consensus 82 ~a~~~ 86 (92)
T 2dgv_A 82 IDRNA 86 (92)
T ss_dssp ECSCC
T ss_pred EcCCC
Confidence 88643
No 267
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-15 Score=102.25 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||..+++++|+++|+.| |.|..+.+.+ +||||+|.+.++|.+|+..|||..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLD----GSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEET----TEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 34456899999999999999999999999 8999988764 59999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024262 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..++..
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9998643
No 268
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.9e-16 Score=107.89 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=72.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCCC-------cEEEEEecChhhHHHHHHhcCCccccCc
Q 024262 121 RHSEYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~-------~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
.....+|||+|||..+++++|. ++|++||+|..+.++.+... |||||+|.+.++|++|++.|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-- 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--
Confidence 3456899999999999999999 99999999999999877542 69999999999999999999999998
Q ss_pred cccceeeeecCCCCC
Q 024262 191 WARGRITVKRYDRSP 205 (270)
Q Consensus 191 ~~~~~i~v~~~~~~~ 205 (270)
++.|.|..+...+
T Consensus 90 --gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 --GRTLKASLGTTKY 102 (111)
T ss_dssp --TEEEEEESCCCCS
T ss_pred --CEEEEEEeccccc
Confidence 9999999986433
No 269
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=4.5e-16 Score=126.67 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccc-CceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.||.|..|.+..+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.+++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 367899999999999999999999999999999997543 589999999999999999999999999 9999999975
No 270
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.65 E-value=4.7e-16 Score=106.84 Aligned_cols=80 Identities=25% Similarity=0.375 Sum_probs=69.6
Q ss_pred CCCCCeEEEcCC--CCCcC--------HHHHHHHhhcccceEEEEEecC-----CCCCcEEEEEEcCHHHHHHHHHhcCC
Q 024262 3 GRFSRTIYVGNL--PSDIR--------EYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 3 ~~~s~~i~V~nl--p~~~t--------~~~l~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
+.||+.|.|.|+ |..+. +++|+++|++||+|.+|.|..+ +.++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999999 33332 4799999999999999999654 25689999999999999999999999
Q ss_pred ccccCceEEEEecCC
Q 024262 68 YNFDGCRLRVELAHG 82 (270)
Q Consensus 68 ~~~~g~~l~v~~~~~ 82 (270)
..|+|+.|.|.+...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998753
No 271
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.9e-15 Score=104.45 Aligned_cols=81 Identities=7% Similarity=0.051 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCe----eEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|.++|..||.| ..+.+......|||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY----GKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 456899999999999999999999999998 6777776666689999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024262 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999975443
No 272
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.65 E-value=1.1e-15 Score=100.69 Aligned_cols=75 Identities=15% Similarity=0.305 Sum_probs=69.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEEEe
Confidence 68999999999999999999999999999999887543 69999999999999999999999998 99999998
Q ss_pred CCC
Q 024262 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 78 a~~ 80 (83)
T 3md1_A 78 AAK 80 (83)
T ss_dssp CCC
T ss_pred cCc
Confidence 864
No 273
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.65 E-value=6.6e-16 Score=106.96 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=70.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.+. .|||||+|.+.++|.+|+..|||..+. |+.|.|..
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA----NQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET----TEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 3456899999999999999999999999999999998 479999999999999999999999998 99999999
Q ss_pred CCCCCC
Q 024262 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
++..+.
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 875444
No 274
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.65 E-value=8e-16 Score=104.37 Aligned_cols=76 Identities=14% Similarity=0.225 Sum_probs=70.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|++.|+|..+. |+.|.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----SRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEE
Confidence 47999999999999999999999999999999988754 369999999999999999999999998 8999999
Q ss_pred cCCC
Q 024262 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.+..
T Consensus 78 ~a~~ 81 (96)
T 2x1f_A 78 YSSN 81 (96)
T ss_dssp ECSC
T ss_pred EcCC
Confidence 8864
No 275
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.5e-15 Score=104.96 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=72.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. |+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC----CcEE
Confidence 345689999999999999999999999999999999987653 69999999999999999999999998 9999
Q ss_pred eeecCCC
Q 024262 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 9988764
No 276
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=102.92 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=71.7
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
.+.....+|||+|||..+++++|+++|+.||.|.. +.++.+..+ |||||+|.+.++|..|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34455689999999999999999999999999999 999887653 699999999999999999999999
Q ss_pred ccCccccceeeeecCC
Q 024262 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
+. |+.|.|..++
T Consensus 88 ~~----g~~l~V~~A~ 99 (99)
T 2la6_A 88 FS----GNPIKVSFAT 99 (99)
T ss_dssp SS----SSBCEEEECC
T ss_pred eC----CcEEEEEecC
Confidence 98 8999998763
No 277
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.64 E-value=1.5e-15 Score=111.31 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=70.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
....|||+||++.+++++|+++|++||.|..|.+......+||||+|.+.++|+.|++.|||..|.+ .++.|+|++++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g--~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS--SCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC--CCcEEEEEEec
Confidence 3468999999999999999999999999999999876666799999999999999999999999961 14899999986
Q ss_pred C
Q 024262 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 123 ~ 123 (164)
T 1sjr_A 123 L 123 (164)
T ss_dssp S
T ss_pred C
Confidence 4
No 278
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=102.77 Aligned_cols=78 Identities=8% Similarity=0.123 Sum_probs=70.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCee-EEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce-
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVC-FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR- 195 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~- 195 (270)
.+..+|||+|||..+++++|+++|+.||.|. .+.++.+..+ |||||+|.+.++|++|++.|||..+. ++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP----GATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES----SCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC----CCCc
Confidence 3458999999999999999999999999999 9999988644 69999999999999999999999998 666
Q ss_pred ---eeeecCCC
Q 024262 196 ---ITVKRYDR 203 (270)
Q Consensus 196 ---i~v~~~~~ 203 (270)
|+|.++..
T Consensus 83 ~~~l~v~~a~~ 93 (99)
T 2div_A 83 AKRFKLNYATY 93 (99)
T ss_dssp CEECCEEETTC
T ss_pred ceeEEEeecCC
Confidence 99988864
No 279
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=9.3e-16 Score=120.97 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccc-CceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.|| .|..|.+..+ .+|||||+|.+.++|.+|+..|||..|. |+.|.|.++.
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 9999999543 3789999999999999999999999999 9999999987
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 280
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.64 E-value=4.6e-15 Score=107.74 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..|.++.+..+ |||||+|.+.++|.+|++.|||..+. ++.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL----NKR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----SCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 3455689999999999999999999999999999999987653 59999999999999999999999998 999
Q ss_pred eeeecCCCCCC
Q 024262 196 ITVKRYDRSPS 206 (270)
Q Consensus 196 i~v~~~~~~~~ 206 (270)
|.|..++....
T Consensus 114 l~v~~a~~~~~ 124 (139)
T 1u6f_A 114 LKVALAASGHQ 124 (139)
T ss_dssp EEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999875433
No 281
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=4e-16 Score=120.28 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccc-CceEEEEecC
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.|| .|..+.+..+. +|+|||+|.+.++|.+|+..|||..|+ |++|.|.++.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 99999996533 799999999999999999999999999 9999999987
Q ss_pred CC
Q 024262 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 282
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7e-16 Score=105.08 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=69.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|++.|||..+. ++.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVK 88 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC----CeEEE
Confidence 34589999999999999999999999999987666655433 69999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024262 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|+.+..+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9988643
No 283
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=1.3e-15 Score=105.47 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ +||||+|.+.++|.+|++.|||..+. ++.|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 101 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD----GRPMN 101 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 355689999999999999999999999999999999987633 59999999999999999999999998 99999
Q ss_pred eecCC
Q 024262 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..+.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98763
No 284
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=2.8e-15 Score=103.80 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=72.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|+|..+. |+.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~----g~~ 97 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA----GRP 97 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 3455689999999999999999999999999999999887553 69999999999999999999999998 999
Q ss_pred eeeecCCC
Q 024262 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|.|..+..
T Consensus 98 l~V~~a~~ 105 (108)
T 2jrs_A 98 MKVGHVTE 105 (108)
T ss_dssp CEEECSCS
T ss_pred EEEEEccc
Confidence 99998864
No 285
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=6.1e-16 Score=111.13 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=71.1
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcc
Q 024262 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 118 ~~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
..+.....+|||+|||+.+|+++|+++|+.||. |..|.++.+..+ |||||+|.+.++|++|++ ||+..+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--- 113 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--- 113 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---
Confidence 344456689999999999999999999999999 788999887654 699999999999999999 9999998
Q ss_pred ccceeeeecCC
Q 024262 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
++.|.|..+.
T Consensus 114 -gr~i~V~~a~ 123 (136)
T 2hgl_A 114 -HRYIEVFKSH 123 (136)
T ss_dssp -SSEEEEEECC
T ss_pred -CEEEEEEECC
Confidence 9999998764
No 286
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=1.1e-15 Score=104.70 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=66.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeC---CCCcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..+..+|||+|||..+++++|+++|+.||.| .++.+ ...+||||+|.+.++|++|++.||+..+. ++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeEEE
Confidence 3456899999999999999999999999988 33333 23479999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024262 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..++..
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9998653
No 287
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=3.9e-16 Score=120.72 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccce--EEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCccccCc----eEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI--LDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC----RLR 76 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v--~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~----~l~ 76 (270)
.++++|||+|||+.+|+++|+++|++||.| ..+.+..+ +..+|||||+|.+.++|.+||..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 467899999999999999999999999999 88888654 45569999999999999999999999999876 677
Q ss_pred EEec
Q 024262 77 VELA 80 (270)
Q Consensus 77 v~~~ 80 (270)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7664
No 288
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.3e-15 Score=105.71 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=72.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC--CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|++|++.|+|..+. |+.|.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 100 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKIE 100 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 344568999999999999999999999999999999987643 379999999999999999999999998 99999
Q ss_pred eecCCC
Q 024262 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|..+..
T Consensus 101 V~~a~~ 106 (109)
T 2err_A 101 VNNATA 106 (109)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 998753
No 289
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=2.2e-16 Score=113.76 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=67.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+|||+|||+.+++++|+++|+.|| |+.|.|+.+..+ |||||+|.+.++|++|+ .+|+..+. ++.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~----gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ----HRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS----SCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC----CEEEE
Confidence 34568999999999999999999999999 679999877653 69999999999999999 79999998 89999
Q ss_pred eecCCCC
Q 024262 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..+...
T Consensus 117 V~~a~~~ 123 (139)
T 2hgn_A 117 LFLNSTT 123 (139)
T ss_dssp CEECCCS
T ss_pred EEECCCC
Confidence 9887643
No 290
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.5e-15 Score=103.53 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcc----cc
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW----AR 193 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~----~~ 193 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+.+.. .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345689999999999999999999999999999999988633 59999999999999999999999996333 47
Q ss_pred ceeeeecCC
Q 024262 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|.+++
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 788888875
No 291
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.8e-15 Score=100.04 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCC-------CCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEE
Q 024262 4 RFSRTIYVGNLP-------SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 4 ~~s~~i~V~nlp-------~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
.....|.|...+ ..+++++|+++|++||+|.+|.|+ +.++|||||+|.+.++|..|+..+++ +.|++|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 345678887765 458999999999999999999997 46799999999999999999997554 6799999
Q ss_pred EEecCCCC
Q 024262 77 VELAHGGS 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++....
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99988663
No 292
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=9e-15 Score=99.30 Aligned_cols=79 Identities=15% Similarity=0.199 Sum_probs=69.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+..+|||+|| .+++++|+++|+.||.|..+.+. ...+||||+|.+.++|.+|+..|||..+. ++.|.|.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~v~ 82 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVN 82 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEET----TEEEEEE
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEE
Confidence 3345689999996 89999999999999999999985 34479999999999999999999999998 9999999
Q ss_pred cCCCCCC
Q 024262 200 RYDRSPS 206 (270)
Q Consensus 200 ~~~~~~~ 206 (270)
++...+.
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9875443
No 293
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=6.2e-15 Score=107.15 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=69.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|++.|||..+. ++.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET----TEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 344568999999999999999999999999999999987743 369999999999999999999999998 899
Q ss_pred eeeecC
Q 024262 196 ITVKRY 201 (270)
Q Consensus 196 i~v~~~ 201 (270)
|.|..+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 988764
No 294
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=8e-16 Score=103.04 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=66.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEEEEE
Confidence 4799999999999999999999999 9999999988644 59999999999999999999999998 999999
Q ss_pred ecCCCC
Q 024262 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..+...
T Consensus 78 ~~~~~~ 83 (90)
T 3p5t_L 78 TPSNKL 83 (90)
T ss_dssp CCC---
T ss_pred EECCCC
Confidence 988743
No 295
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.3e-15 Score=103.08 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=67.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+|||+|||..+|+++|+++|+.||+|..|.++.+.. .|||||+|.+.++|..|+. +++..+. |+.|.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK----ETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT----TTTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC----CEEEEEE
Confidence 458999999999999999999999999999999998754 3799999999999999999 8999988 8888887
Q ss_pred cC
Q 024262 200 RY 201 (270)
Q Consensus 200 ~~ 201 (270)
..
T Consensus 85 ~~ 86 (103)
T 1s79_A 85 FK 86 (103)
T ss_dssp EH
T ss_pred Ec
Confidence 54
No 296
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=8.9e-16 Score=104.85 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=69.3
Q ss_pred cceEEEeCCCC------CCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccc
Q 024262 124 EYRVIVRGLPS------SASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 124 ~~~l~V~nl~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
.++|||+|||. .+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD----L 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS----S
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC----C
Confidence 47999999999 9999999999999999999999987763 69999999999999999999999998 7
Q ss_pred -ceeeeecCC
Q 024262 194 -GRITVKRYD 202 (270)
Q Consensus 194 -~~i~v~~~~ 202 (270)
+.|.|..+.
T Consensus 82 ~r~l~V~~a~ 91 (100)
T 3ns6_A 82 KHRLFLYTMK 91 (100)
T ss_dssp SCBCEEEESH
T ss_pred CeEEEEEECc
Confidence 899988764
No 297
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.62 E-value=1.9e-15 Score=105.21 Aligned_cols=79 Identities=15% Similarity=0.219 Sum_probs=71.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. |+.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 345689999999999999999999999999999999877543 69999999999999999999999998 9999
Q ss_pred eeecCCC
Q 024262 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 99 ~V~~a~~ 105 (110)
T 1oo0_B 99 QVDWCFV 105 (110)
T ss_dssp EEEESEE
T ss_pred EEEEccc
Confidence 9998864
No 298
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.7e-15 Score=102.04 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=67.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+|||.|||+.+++++|+++|+.||.+ .|.++.+..+ |||||+|.+.++|++|++ +|+..+. ++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ----HRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS----SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC----CcEEE
Confidence 3456899999999999999999999999954 8999888643 599999999999999994 7999988 88999
Q ss_pred eecCCC
Q 024262 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|..+..
T Consensus 86 V~~~~~ 91 (102)
T 1wez_A 86 LFLNST 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 987753
No 299
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=2.7e-15 Score=103.23 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|..||.|.. +.++.+.. .|||||+|.+.++|++|+.. ++..+. ++.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~----gr~ 85 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG----HRY 85 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC----CcE
Confidence 3445689999999999999999999999999987 77776633 37999999999999999998 999988 889
Q ss_pred eeeecCCC
Q 024262 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|.|..+..
T Consensus 86 i~v~~~~~ 93 (104)
T 1wg5_A 86 IEIFKSSR 93 (104)
T ss_dssp CEEEEECT
T ss_pred EEEEECCH
Confidence 99987753
No 300
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.7e-15 Score=102.67 Aligned_cols=74 Identities=16% Similarity=0.291 Sum_probs=67.9
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~V~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+..+|||+|||. .+++++|+++|+.||.|..+.+.+ |||||+|.+.++|..|+..|+|..+. ++.|.|..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIKN----AFGFIQFDNPQSVRDAIECESQEMNF----GKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEET----TEEEEEESCHHHHHHHHHHHTCSSCB----TTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEeC----CEEEEEECCHHHHHHHHHHcCCCeeC----CcEEEEEE
Confidence 4568999999998 999999999999999999999863 69999999999999999999999998 89999998
Q ss_pred CCC
Q 024262 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 80 a~~ 82 (96)
T 2kvi_A 80 SSS 82 (96)
T ss_dssp EEC
T ss_pred cCc
Confidence 864
No 301
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.6e-16 Score=102.33 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=67.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ----AQMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC----EESCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe----eEEEee
Confidence 458999999999999999999999999999999988754 369999999999999999999999988 887776
Q ss_pred ecC
Q 024262 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
...
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 302
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.62 E-value=1.1e-14 Score=102.39 Aligned_cols=76 Identities=8% Similarity=0.020 Sum_probs=66.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcE-EEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
...|||+||++.+++++|.++|++||.|..|.+... .|| |||+|.+.++|..|++.|||..|.+ ..+.|+|.+++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g--~~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYA--GCCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBT--TBSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecC--CCeEEEEEEec
Confidence 456789999999999999999999999999998764 376 9999999999999999999999972 02689999886
Q ss_pred C
Q 024262 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 101 ~ 101 (124)
T 2e5i_A 101 P 101 (124)
T ss_dssp C
T ss_pred C
Confidence 3
No 303
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.62 E-value=4.3e-15 Score=105.47 Aligned_cols=78 Identities=9% Similarity=0.162 Sum_probs=69.0
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEeeC-CCCcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.+..+|||+|||..+++++|+ ++|++||.|..|.+... ...|||||+|.+.++|..|+..|||..+. |+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----gr~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----GNPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT----TSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC----CCEE
Confidence 345799999999999999876 69999999999888653 34479999999999999999999999998 9999
Q ss_pred eeecCCC
Q 024262 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|.++..
T Consensus 103 ~V~~a~~ 109 (127)
T 2a3j_A 103 VITFSET 109 (127)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9999864
No 304
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.62 E-value=3.5e-15 Score=104.68 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=70.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+..+|||+|||..+++++|.++|+.||.|..+.++.+.. .|||||+|.+.++|..|+..|||..+. |+.|.|..
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS----NRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS----SCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 4568999999999999999999999999999999987654 379999999999999999999999998 99999998
Q ss_pred CC
Q 024262 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
+.
T Consensus 82 a~ 83 (115)
T 3lqv_A 82 YN 83 (115)
T ss_dssp CC
T ss_pred ec
Confidence 86
No 305
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1.5e-15 Score=106.88 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=70.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccc
Q 024262 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 119 ~~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
.......+|||+|||..+++++|+++|+.||. |..|.++.+..+ |||||+|.+.++|++|++ +|+..|.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---- 86 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---- 86 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC----
Confidence 33455689999999999999999999999999 888999887654 599999999999999999 9999998
Q ss_pred cceeeeecCC
Q 024262 193 RGRITVKRYD 202 (270)
Q Consensus 193 ~~~i~v~~~~ 202 (270)
++.|.|..+.
T Consensus 87 gr~i~V~~a~ 96 (118)
T 2db1_A 87 HRYIEVFKSH 96 (118)
T ss_dssp TEEEEEEEEC
T ss_pred CeEEEEEECC
Confidence 9999998775
No 306
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=5.4e-15 Score=109.49 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=72.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|+.||.|..|.++.+..+ +||||+|.+.++|.+|++.||+..|. ++.|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD----DRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 45689999999999999999999999999999999988654 59999999999999999999999998 99999
Q ss_pred eecCCC
Q 024262 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|.++..
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 999974
No 307
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.8e-15 Score=105.04 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=69.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|+ .|||..+. ++.|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL----GVPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC----CeEEE
Confidence 34579999999999999999999999999999999877643 69999999999999999 99999998 99999
Q ss_pred eecCC
Q 024262 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..+.
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 98865
No 308
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.61 E-value=2.2e-14 Score=101.95 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|+..|||..+. ++.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 345668999999999999999999999999999999988762 369999999999999999999999998 9999
Q ss_pred eeecCCC
Q 024262 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 107 ~V~~a~~ 113 (124)
T 2kt5_A 107 DIQLVAS 113 (124)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9998864
No 309
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=6.3e-15 Score=98.87 Aligned_cols=77 Identities=21% Similarity=0.308 Sum_probs=69.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
....+|||+|||..+++++|+++|+.| .|..+.++.+..+ |||||+|.+.++|.+|+. |||..+. ++.|.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~----gr~i~v 81 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG----GRYIEV 81 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET----TEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC----CcEEEE
Confidence 445899999999999999999999999 9999999988443 599999999999999999 9999998 999999
Q ss_pred ecCCCC
Q 024262 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..+...
T Consensus 82 ~~a~~~ 87 (91)
T 2dgw_A 82 FREKSG 87 (91)
T ss_dssp EEESSC
T ss_pred EECCcC
Confidence 988654
No 310
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.5e-15 Score=105.77 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=68.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.. .+||||+|.+.++|..|+..|||..+. ++.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG--GITAIVEFLEPLEARKAFRHLAYSKFH----HVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS--SSCEEEEESCHHHHHHHHHHHTTCBSS----SSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEEEEEECC
Confidence 4579999999999999999999999999999988753 469999999999999999999999998 9999999886
Q ss_pred C
Q 024262 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 311
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=4.5e-15 Score=100.70 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=68.7
Q ss_pred CCCCcceEEEeCCCC-CCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 120 SRHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+..+|||+|||. .+++++|+++|+.||.|..+.+. .|||||+|.+.++|.+|+..|||..+. |+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNF----GKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEET----TEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 344568999999998 99999999999999999999985 369999999999999999999999998 999999
Q ss_pred ecCCC
Q 024262 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..++.
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 98754
No 312
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=5e-15 Score=106.34 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=69.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeE--EEEeeCCCC----cEEEEEecChhhHHHHHHhcCCc----cccCcc
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDT----EFRNPW 191 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~----~~~~~~ 191 (270)
....+|||+|||..+++++|+++|+.||.|.. |.++.+..+ |||||+|.+. +|.+|+..|||. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--- 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID--- 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC---
Confidence 45679999999999999999999999999966 899888743 6999999999 999999999999 877
Q ss_pred ccceeeeecCCC
Q 024262 192 ARGRITVKRYDR 203 (270)
Q Consensus 192 ~~~~i~v~~~~~ 203 (270)
|+.|.|..+..
T Consensus 97 -gr~l~V~~a~~ 107 (131)
T 2m2b_A 97 -GKTINVEFAKG 107 (131)
T ss_dssp -GCCCCCEECCC
T ss_pred -CEEEEEEECCC
Confidence 99999998864
No 313
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.61 E-value=4.5e-15 Score=101.63 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=68.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|+.||.|..+.+... .|||||+|.+.++|..|+..|||..+. |+.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE--KGCCFIKYDTHEQAAVCIVALANFPFQ----GRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHTTCEET----TEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEec
Confidence 34579999999999999999999999999999998843 479999999999999999999999998 999999887
Q ss_pred C
Q 024262 202 D 202 (270)
Q Consensus 202 ~ 202 (270)
+
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 5
No 314
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.5e-14 Score=98.26 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=68.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|.+|+.. +..+. ++.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~----g~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMID----GRW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEET----TEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeC----CeE
Confidence 3445689999999999999999999999999999999988653 5999999999999999994 55666 899
Q ss_pred eeeecCCCC
Q 024262 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|..+...
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 999988643
No 315
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=5.1e-15 Score=99.75 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=67.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC-ccccCccccceeeeec
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD-TEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g-~~~~~~~~~~~i~v~~ 200 (270)
...+|||+|||..+++++|+++|+.||. |..+.+.. .+||||+|.+.++|.+|++.||| ..+. ++.|.|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELH----GKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEET----TEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeEC----CEEEEEEE
Confidence 4479999999999999999999999999 55555543 36999999999999999999999 8888 99999999
Q ss_pred CCCCCCC
Q 024262 201 YDRSPSR 207 (270)
Q Consensus 201 ~~~~~~r 207 (270)
+.....+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 8754443
No 316
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=9.5e-15 Score=102.62 Aligned_cols=80 Identities=15% Similarity=0.223 Sum_probs=71.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|..|+.. ++..+. ++.|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID----GRVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC----CEEEE
Confidence 3458999999999999999999999999999999998754 36999999999999999998 999988 99999
Q ss_pred eecCCCCCC
Q 024262 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999865433
No 317
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.7e-15 Score=103.58 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=68.6
Q ss_pred CCcceEEE--eCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccc-cCccccceeee
Q 024262 122 HSEYRVIV--RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF-RNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~V--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~-~~~~~~~~i~v 198 (270)
.++.+||| +||+..+++++|+++|++||.|..+.++.+ .|||||+|.+.++|++|++.|||..+ .....+..+.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 45678999 779999999999999999999999888754 47999999999999999999999988 32223888888
Q ss_pred ecCCC
Q 024262 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 101 ~~a~~ 105 (114)
T 2cq2_A 101 NFVEK 105 (114)
T ss_dssp EEESC
T ss_pred Eeccc
Confidence 88864
No 318
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.8e-15 Score=106.60 Aligned_cols=78 Identities=21% Similarity=0.220 Sum_probs=66.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEee-CCC---CcEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR-DSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~-~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
+.....+|||+|||..+++++|+++|..||.|..+.++. ... .|||||+|.+.++|.+|++ ||+..|. ++.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG----NRF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST----TSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 345568999999999999999999999999997743333 322 2699999999999999999 9999998 999
Q ss_pred eeeecCC
Q 024262 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..+.
T Consensus 96 i~V~~a~ 102 (124)
T 1wel_A 96 IQVHPIT 102 (124)
T ss_dssp BEEEEEC
T ss_pred EEEEECC
Confidence 9998775
No 319
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=1.4e-15 Score=102.94 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=67.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+... +||||+|.+.++|++|++.||+..+. ++.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEE
Confidence 3489999999999999999999999999987777665443 69999999999999999999999998 999999
Q ss_pred ecCC
Q 024262 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8764
No 320
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=102.41 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=67.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
....+|||+|||..+++++|+++|+.| .|..|.++.+..+ |||||+|.+.++|++|+ .+|+..+. ++.|.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI----QRYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET----TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 345799999999999999999999999 8999999877543 69999999999999999 69999998 899999
Q ss_pred ecCC
Q 024262 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 8775
No 321
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.59 E-value=9.8e-15 Score=97.47 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=68.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|+ .|||..+. ++.|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR----GRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET----TEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC----CcEEEEE
Confidence 47999999999999999999999999999999988753 369999999999999999 99999998 9999999
Q ss_pred cCCC
Q 024262 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.++.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 8853
No 322
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.59 E-value=7.3e-15 Score=101.23 Aligned_cols=76 Identities=13% Similarity=0.254 Sum_probs=67.7
Q ss_pred CcceEEEeCCCCCC------CHHHHHHHHHhcCCeeEEEEeeC--CCCcEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 123 SEYRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 123 ~~~~l~V~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
..++|||+|||..+ ++++|+++|+.||.|..+.++.. ...|||||+|.+.++|..|+..|||..+. |+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS----TT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC----CC
Confidence 35799999999999 78999999999999999998732 22379999999999999999999999998 88
Q ss_pred -eeeeecCC
Q 024262 195 -RITVKRYD 202 (270)
Q Consensus 195 -~i~v~~~~ 202 (270)
.|.|..+.
T Consensus 90 ~~l~V~~a~ 98 (105)
T 2nlw_A 90 HTFRVNLFT 98 (105)
T ss_dssp CEEEEECSC
T ss_pred ceEEEEEcc
Confidence 99998875
No 323
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=4.3e-15 Score=102.30 Aligned_cols=78 Identities=28% Similarity=0.394 Sum_probs=71.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+... |||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----GRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS----SSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 4579999999999999999999999999999999887543 69999999999999999999999998 999999
Q ss_pred ecCCCC
Q 024262 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..+...
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 988643
No 324
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=97.35 Aligned_cols=74 Identities=15% Similarity=0.253 Sum_probs=64.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
...+|||+|||..+++++|+++|+.||.|..| +.+..+ .||||+|.+.++|.+|+. |+|..+. ++.|.|..+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~----g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG----GHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET----TEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC----CEEEEEEEC
Confidence 34799999999999999999999999999987 333333 399999999999999999 9999998 999999877
Q ss_pred CC
Q 024262 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
..
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 325
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.59 E-value=2.9e-15 Score=98.19 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=61.8
Q ss_pred ceEEEeCCCCCC------CHHHHHHHHHhcCCeeEEEEeeC--CCCcEEEEEecChhhHHHHHHhcCCccccCccccc-e
Q 024262 125 YRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-R 195 (270)
Q Consensus 125 ~~l~V~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~-~ 195 (270)
++|||+|||..+ ++++|+++|++||.|..+.++.. ...|||||+|.+.++|.+|+..|||..+. |+ .
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS----SSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC----Ccee
Confidence 689999999999 67999999999999999988742 22379999999999999999999999998 77 6
Q ss_pred eee
Q 024262 196 ITV 198 (270)
Q Consensus 196 i~v 198 (270)
|.|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 765
No 326
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=3.9e-15 Score=122.59 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=67.4
Q ss_pred CCCCCCeEEEcC--CCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccc---Cc--e
Q 024262 2 SGRFSRTIYVGN--LPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GC--R 74 (270)
Q Consensus 2 ~~~~s~~i~V~n--lp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~--~ 74 (270)
++.++.+|||+| |+..+|+++|+++|++||+|..|.+.. .+|||||+|.+.++|++|++.|||..+. |+ +
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 458999999999 578899999999999999999987754 4899999999999999999999998883 44 6
Q ss_pred EEEEecC
Q 024262 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7778774
No 327
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3.3e-15 Score=104.58 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=69.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCe-eEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.....+|||+|||..+++++|+++|+.||.| ..|.++.+.. .|||||+|.+.++|.+|++. |+..|. ++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~----gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN----GREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET----TEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC----CeEE
Confidence 3456899999999999999999999999999 8888887763 36999999999999999997 999998 9999
Q ss_pred eeecCC
Q 024262 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 998876
No 328
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.59 E-value=8.5e-15 Score=108.00 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=69.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|.+|++.|||..|. |+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----GEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEe
Confidence 457999999999999999999999999 9999999988654 59999999999999999999999998 9999
Q ss_pred eeecCC
Q 024262 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999875
No 329
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1e-14 Score=95.66 Aligned_cols=69 Identities=17% Similarity=0.307 Sum_probs=62.1
Q ss_pred eEEEeCCCCCCCHHH----HHHHHHhcC-CeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 126 RVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.|||.|||..+++++ |.++|+.|| +|.+| .+|+|||.|.+.++|..|++.|+|..+. ++.|+|.+
T Consensus 11 ~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~----gr~i~v~~ 80 (96)
T 2diu_A 11 LLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVF----GNRIIVSF 80 (96)
T ss_dssp EEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSS----SSCCEEES
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccC----CceEEEEe
Confidence 499999999999988 558999995 99888 2379999999999999999999999999 99999999
Q ss_pred CCCC
Q 024262 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
++..
T Consensus 81 A~~~ 84 (96)
T 2diu_A 81 TPKN 84 (96)
T ss_dssp SCCS
T ss_pred cCCC
Confidence 9743
No 330
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=3.5e-15 Score=96.31 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=64.4
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecC
Q 024262 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
+|||+|||..+++++|+++|+.||+|..+.++.+.. .|||||+|.+.++|++|++ |++..+. |+.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEEeC
Confidence 589999999999999999999999999999987764 3699999999999999998 9999998 888888753
No 331
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.58 E-value=1.3e-14 Score=96.42 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=66.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|++. ++..+. |+.|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~----g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLD----GRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEEC----CEEEE
Confidence 45689999999999999999999999999999999987653 6999999999999999964 777777 88988
Q ss_pred eecC
Q 024262 198 VKRY 201 (270)
Q Consensus 198 v~~~ 201 (270)
|+.+
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8753
No 332
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.58 E-value=6.1e-15 Score=104.19 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=68.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcE-EEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~-afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....|||+||++.+++++|.++|++||.|..|.+.... .++ |||+|.+.++|..|++.|||..|.+ ..+.|+|++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g--~~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEET--TEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecC--CCcEEEEEe
Confidence 344688899999999999999999999999999887754 356 9999999999999999999999982 128899999
Q ss_pred CCC
Q 024262 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
++.
T Consensus 103 ak~ 105 (130)
T 3zzy_A 103 SKL 105 (130)
T ss_dssp CSC
T ss_pred cCC
Confidence 864
No 333
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=7.7e-16 Score=105.64 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=58.6
Q ss_pred cCCCCCcCHHHHHHHh------------hcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEE
Q 024262 12 GNLPSDIREYEVEDLF------------YKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 12 ~nlp~~~t~~~l~~~F------------~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.|||..+++++|+++| ++||+|..|.|..+ +.++|||||+|.++++|.+|+..|||..|+|++|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 3444455677666665 99999999999654 567999999999999999999999999999999999
Q ss_pred Eec
Q 024262 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
.++
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 334
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.58 E-value=1.1e-14 Score=103.60 Aligned_cols=76 Identities=21% Similarity=0.323 Sum_probs=69.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|+ .|||..+. ++.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR----GRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 357999999999999999999999999999999987643 269999999999999999 89999998 999999
Q ss_pred ecCCC
Q 024262 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..++.
T Consensus 110 ~~a~~ 114 (124)
T 2jwn_A 110 LPKRT 114 (124)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 98864
No 335
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=7.9e-15 Score=102.57 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCC-----cCHHHHHHHhhcccceEEEEEecC-------CCCCcEEEEEEcCHHHHHHHHHhcCCcccc
Q 024262 4 RFSRTIYVGNLPSD-----IREYEVEDLFYKYGRILDIELKIP-------PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~s~~i~V~nlp~~-----~t~~~l~~~F~~~G~v~~~~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.++++|+|.|+-.. --+++|+++|++||+|.+|.|..+ +.++|+|||+|.++++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 47999999999432 237899999999999999999543 234699999999999999999999999999
Q ss_pred CceEEEEecCC
Q 024262 72 GCRLRVELAHG 82 (270)
Q Consensus 72 g~~l~v~~~~~ 82 (270)
|+.|.|.+...
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999753
No 336
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.57 E-value=3.6e-15 Score=101.87 Aligned_cols=78 Identities=17% Similarity=0.391 Sum_probs=67.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-----CCcEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.....++|||+|||..+++++|+++|+.|| |..+.++.+. ..|||||+|.+.++|.+|+ .|+|..+. |+
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~----g~ 88 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----NR 88 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT----TB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC----Ce
Confidence 345568999999999999999999999999 9999998775 2379999999999999999 89999998 99
Q ss_pred eeeeecCCC
Q 024262 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.|.|..++.
T Consensus 89 ~l~V~~a~~ 97 (100)
T 2j76_E 89 RIRVDVADQ 97 (100)
T ss_dssp CCCCEECCC
T ss_pred EEEEEeccC
Confidence 999988764
No 337
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=98.12 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=67.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.|+ .+.++.+... +||||+|.+.++|.+|++.||+..+. ++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID----GNK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 345668999999999999999999999774 4555555433 69999999999999999999999998 999
Q ss_pred eeeecCCCCCC
Q 024262 196 ITVKRYDRSPS 206 (270)
Q Consensus 196 i~v~~~~~~~~ 206 (270)
|.|.+++....
T Consensus 84 l~V~~a~~~~~ 94 (102)
T 2fc8_A 84 VTLDWAKPKGE 94 (102)
T ss_dssp CEEEECCCCCS
T ss_pred EEEEEecCCCC
Confidence 99999975444
No 338
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=5.9e-15 Score=95.73 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=65.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
++|||+|||..+++++|+++|+.||+|..+.++.+.. .|+|||+|.+.++|.+|++.++ ..+. |+.|.|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEEEe
Confidence 3799999999999999999999999999999988764 3699999999999999999999 8887 88888876
Q ss_pred C
Q 024262 201 Y 201 (270)
Q Consensus 201 ~ 201 (270)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 4
No 339
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=1.3e-14 Score=100.61 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=68.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|+..++ ..+. |+.|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~----g~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCC----CEEEE
Confidence 4568999999999999999999999999999999988764 3699999999999999999874 7777 99999
Q ss_pred eecCCCCC
Q 024262 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..+....
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99886433
No 340
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.56 E-value=4.6e-15 Score=99.30 Aligned_cols=74 Identities=27% Similarity=0.362 Sum_probs=67.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.+ |.+|+..|||..+. |+.|.|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEEEE
Confidence 5899999999999999999999999999999987754 369999999999 99999999999998 99999998
Q ss_pred CCC
Q 024262 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 77 a~~ 79 (90)
T 2ki2_A 77 ANP 79 (90)
T ss_dssp C--
T ss_pred cCC
Confidence 864
No 341
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.56 E-value=7.5e-15 Score=99.52 Aligned_cols=78 Identities=8% Similarity=0.170 Sum_probs=67.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+..+|||+|||..+++++|+++|+.||.|..+ .......|||||+|.+.++|.+|+..|+|..+. |+.|.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEE
Confidence 3456899999999999999999999999998777 333333479999999999999999999999998 99999998
Q ss_pred CCC
Q 024262 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 853
No 342
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.56 E-value=6.5e-15 Score=100.04 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=69.8
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEeeC-CCCcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.+..+|||+|||..+++++|+ ++|+.||.|..+.+... ...|||||+|.+.++|..|+..|||..+. |+.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY----DKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC----CcEE
Confidence 456899999999999999999 99999999999988742 22369999999999999999999999998 9999
Q ss_pred eeecCCCC
Q 024262 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
.|.++...
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99988643
No 343
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=6.8e-15 Score=101.77 Aligned_cols=76 Identities=12% Similarity=0.192 Sum_probs=68.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCC---eeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccce
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
....+|||+|||+.+++++|+++|+.||. |..+.++.+..+ |||||+|.+.++|.+|+. +|+..+. ++.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG----QRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS----SSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC----CeE
Confidence 45689999999999999999999999998 888999877653 699999999999999999 9999988 889
Q ss_pred eeeecCC
Q 024262 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..+.
T Consensus 84 i~V~~a~ 90 (107)
T 2lmi_A 84 VEVYEIN 90 (107)
T ss_dssp CCCEECC
T ss_pred EEEEECC
Confidence 9988765
No 344
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.55 E-value=1.3e-14 Score=102.53 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=65.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCee--EEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--FAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
......+|||+|||+.+++++|+++|+.| .|+ .|.++.+..+ |||||+|.+.++|++|++. ++..|. ++
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~----gR 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIG----HR 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBT----TB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEEC----CE
Confidence 33456889999999999999999999999 666 8888877553 7999999999999999985 778887 88
Q ss_pred eeeeecCC
Q 024262 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|..+.
T Consensus 112 ~I~V~~a~ 119 (126)
T 2hgm_A 112 YIEVFKSS 119 (126)
T ss_dssp CCCCEEEC
T ss_pred EEEEEECC
Confidence 88887654
No 345
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=2.1e-14 Score=95.37 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=65.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhc----C-------CeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCc
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKA----G-------DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
....+|||+|||..+++++|+++|+.| | .|..+.+..+ .|||||+|.+.++|.+|+ .|||..+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~-- 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQ-- 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEET--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEEC--
Confidence 345899999999999999999999999 8 8999988876 479999999999999999 99999998
Q ss_pred cccceeeeec
Q 024262 191 WARGRITVKR 200 (270)
Q Consensus 191 ~~~~~i~v~~ 200 (270)
|+.|.|+.
T Consensus 79 --g~~l~V~r 86 (87)
T 2hzc_A 79 --GQSLKIRR 86 (87)
T ss_dssp --TEECEEEC
T ss_pred --CeEEEEeC
Confidence 88888863
No 346
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=7e-14 Score=97.02 Aligned_cols=78 Identities=18% Similarity=0.296 Sum_probs=68.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCC-eeEEEEe-eCC----CCcEEEEEecChhhHHHHHHhcC--CccccCccccc
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVS-RDS----EGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARG 194 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~----~~~~afv~f~~~~~a~~a~~~l~--g~~~~~~~~~~ 194 (270)
+..+|||+|||..+++++|+++|..||. |..+.++ .+. ..|||||+|.+.++|..|++.|+ +..+. ++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~----g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW----GH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT----TB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec----CC
Confidence 4589999999999999999999999998 9999887 443 33699999999999999999996 57887 89
Q ss_pred eeeeecCCCC
Q 024262 195 RITVKRYDRS 204 (270)
Q Consensus 195 ~i~v~~~~~~ 204 (270)
.|.|.++...
T Consensus 83 ~l~V~~a~~~ 92 (109)
T 2dis_A 83 QIAVDWAEPE 92 (109)
T ss_dssp CCEEEESCSS
T ss_pred eEEEEEcCCC
Confidence 9999998643
No 347
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.55 E-value=1.9e-14 Score=99.97 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCc----------CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCc
Q 024262 4 RFSRTIYVGNLPSDI----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~----------t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
-++++|.|.|+-... -+++|+++|++||.|.+|.|..+ .++|+|||+|.++++|.+|+..|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 468899999983321 24688999999999999998654 3589999999999999999999999999999
Q ss_pred eEEEEecC
Q 024262 74 RLRVELAH 81 (270)
Q Consensus 74 ~l~v~~~~ 81 (270)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999985
No 348
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=3e-14 Score=97.45 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=65.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEee----CCCCcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR----DSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~----~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|.. .++. ....|||||+|.+.++|.+|++ |||..+. ++.|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF----GNEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT----TBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC----CcEEE
Confidence 35689999999999999999999999998765 2222 2345799999999999999999 9999998 99999
Q ss_pred eecCCCC
Q 024262 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..+...
T Consensus 89 V~~a~~~ 95 (101)
T 1fj7_A 89 LEKPKGR 95 (101)
T ss_dssp EECCSCC
T ss_pred EEEcCCC
Confidence 9988643
No 349
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.7e-14 Score=115.91 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCC-cccc---CceEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDG-YNFD---GCRLRV 77 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~---g~~l~v 77 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999854 567799999999999999999999955 4444 999999
Q ss_pred EecCCC
Q 024262 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998765
No 350
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.54 E-value=3.1e-14 Score=107.28 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..+..+|||+|||..+++++|+++|+.||.|..|.+..+.. .|||||+|.+.++|.+|++.|||..+. ++.|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~----Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS----SSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 34568999999999999999999999999999999988753 369999999999999999999999998 89999
Q ss_pred eecCC
Q 024262 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..+.
T Consensus 161 V~~a~ 165 (177)
T 2f3j_A 161 IQLVA 165 (177)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 98875
No 351
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=2.8e-14 Score=112.08 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=69.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+|||+||+..+++++|+++|+.|| .|..|.|+.+..+ |||||+|.+.++|.+||+.||+..|. ++.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT----TBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC----CEEe
Confidence 457899999999999999999999999 9999999988654 59999999999999999999999998 9999
Q ss_pred eeecCC
Q 024262 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999875
No 352
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.53 E-value=1.6e-14 Score=93.18 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=62.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+|||+|||..+++++|+++|+.||+|..+.++.+.. .|||||+|.+.++|..|++. ++..+. |+.|.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG----LSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT----TBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC----CEEEEEEE
Confidence 589999999999999999999999999999987654 36999999999999999995 888887 88887765
No 353
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.53 E-value=1.2e-14 Score=96.86 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=66.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCCC
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..+|||+|||..+++++|+++|++| .|..+.+. ...|||||+|.+.++|++|++.|||..+. ++.|.|..+..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----GKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEET----TEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEEEEcCC
Confidence 4789999999999999999999999 99999885 44579999999999999999999999998 99999998754
No 354
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=5.7e-15 Score=104.18 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=66.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCe----eEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccc
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
.....+|||+|||+.+++++|+++|+.||.| ..|.++.+..+ |||||+|.+.++|.+|++. |+..+. +
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~----g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG----K 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS----S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC----C
Confidence 3456899999999999999999999999975 57888877543 6999999999999999996 998888 8
Q ss_pred ceeeeecCC
Q 024262 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 889887764
No 355
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.52 E-value=3.4e-14 Score=103.59 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=68.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEe-eCCCCcEEEEEecChhhHHHHHHhcCCccccCccc
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVS-RDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~-~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
.+..+|||+|||..+++++|+++|+.||.|.. +.+. .....|||||+|.+.++|..|+..|||..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---- 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF---- 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC----
Confidence 34589999999999999999999999998865 3333 3344479999999999999999999999998
Q ss_pred cceeeeecCCCCCC
Q 024262 193 RGRITVKRYDRSPS 206 (270)
Q Consensus 193 ~~~i~v~~~~~~~~ 206 (270)
|+.|.|.+++....
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999875433
No 356
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.52 E-value=5.2e-14 Score=99.32 Aligned_cols=77 Identities=16% Similarity=0.200 Sum_probs=68.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|| .+++++|+++|+.||.|..|.+.. ..|||||+|.+.++|..|++.|+|..+. ++.|.|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~--~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP--PRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET--TTTEEEEECSSHHHHHHHHHHHTTCBCS----SCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEE
Confidence 345689999996 699999999999999999999873 4479999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024262 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87543
No 357
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-15 Score=106.04 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=71.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCc
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~----~~~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
+..+|||+|||..+++++|+++|+.||.|.. +.++.+.. .|||||+|.+.++|.+|+..|||..+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-- 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS-- 83 (116)
Confidence 4579999999999999999999999999988 88877644 369999999999999999999999998
Q ss_pred cccceeeeecCCCCCCC
Q 024262 191 WARGRITVKRYDRSPSR 207 (270)
Q Consensus 191 ~~~~~i~v~~~~~~~~r 207 (270)
++.|.|..+...+.+
T Consensus 84 --g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 --GNPIKVSFATRRADF 98 (116)
Confidence 999999998754443
No 358
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=8.2e-14 Score=95.44 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=64.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|+. ++..+. |..|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~----g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH----GKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET----TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC----CEEEEEE
Confidence 4589999999999999999999999999999999988633 699999999999999999 777776 7777766
Q ss_pred cCC
Q 024262 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
.+.
T Consensus 82 ~a~ 84 (102)
T 2xs2_A 82 PAI 84 (102)
T ss_dssp EEE
T ss_pred ECC
Confidence 654
No 359
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.48 E-value=7.9e-14 Score=92.88 Aligned_cols=76 Identities=11% Similarity=0.173 Sum_probs=60.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+..+|||+|||..+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|.+ +++..+. ..++.|.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~--~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI--IKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE--ETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc--cCCEEEEEE
Confidence 3445689999999999999999999999999999999876 45799999999999983 4555432 237888888
Q ss_pred cCC
Q 024262 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
.+.
T Consensus 80 ~a~ 82 (89)
T 3d2w_A 80 NAE 82 (89)
T ss_dssp ECC
T ss_pred EcC
Confidence 775
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=7.5e-14 Score=92.92 Aligned_cols=75 Identities=9% Similarity=0.131 Sum_probs=61.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+ ..|||||+|.+.++|++| ++..+. ..+..|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~--~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLI--IKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEE--ETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCce--eCCEEEEEEecC
Confidence 3479999999999999999999999999999999876 457999999999999753 444331 238888888876
Q ss_pred CC
Q 024262 203 RS 204 (270)
Q Consensus 203 ~~ 204 (270)
..
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=8.4e-13 Score=91.91 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=67.3
Q ss_pred CCCcceEEEeCCCCCCC-----------HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccC
Q 024262 121 RHSEYRVIVRGLPSSAS-----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 121 ~~~~~~l~V~nl~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
..+..+|+|.||..... +++|+++|++||.|..+.+......|||||+|.+.++|.+|+..|||..+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~- 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG- 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET-
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 34568999999954432 579999999999999997754445689999999999999999999999998
Q ss_pred ccccceeeeecCCC
Q 024262 190 PWARGRITVKRYDR 203 (270)
Q Consensus 190 ~~~~~~i~v~~~~~ 203 (270)
++.|.|..+..
T Consensus 91 ---gr~l~v~~a~~ 101 (112)
T 2dit_A 91 ---GRQITAQAWDG 101 (112)
T ss_dssp ---TEECEEEECCS
T ss_pred ---CcEEEEEEeCC
Confidence 99999999864
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.46 E-value=7.6e-13 Score=101.15 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=65.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccceeeeec
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+|||+|||..+++++|+++|+.||.|..|.+..+..+ |||||+|.+.++|..|+..++ ..+. |+.|.|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~----Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK----ETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET----TEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC----CEEEEEEE
Confidence 479999999999999999999999999999999886543 699999999999999998665 4676 89998887
Q ss_pred CC
Q 024262 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 64
No 363
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=4.7e-13 Score=92.91 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=67.7
Q ss_pred CCCCeEEEcCCCCC-cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcC-HHHHHHHHHhcC--CccccCceEEEEe
Q 024262 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGRD--GYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~-~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~--~~~~~g~~l~v~~ 79 (270)
.+.+.|+|+||+.. ++.++|+++|++||+|..|.+..+ ..+|||+|.+ +++|..|+..|| +..|.|..++++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46899999999999 999999999999999999999776 3479999999 899999999995 7899999999987
Q ss_pred cC
Q 024262 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 364
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.44 E-value=4e-13 Score=93.27 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=66.3
Q ss_pred ceEEEeCC----CCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecC----hhh----HHHHHH--hcCCcc
Q 024262 125 YRVIVRGL----PSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTN----PED----MKYAIR--KLDDTE 186 (270)
Q Consensus 125 ~~l~V~nl----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----~~afv~f~~----~~~----a~~a~~--~l~g~~ 186 (270)
..|||+|| |+.+++++|+++|+.||+|..+.++.|+.+ |||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999999999999999988 599999996 444 789988 889999
Q ss_pred ccCccccceeeeecCC
Q 024262 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
|. |+.|+|...+
T Consensus 83 I~----Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IM----GFKFEVILNK 94 (136)
T ss_dssp ET----TEEEEEEECC
T ss_pred ec----CcEEEEEECc
Confidence 99 9999998775
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.43 E-value=2.8e-13 Score=105.96 Aligned_cols=81 Identities=12% Similarity=0.218 Sum_probs=69.1
Q ss_pred CcceEEEeCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc-----
Q 024262 123 SEYRVIVRGLPSSA---------SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR----- 188 (270)
Q Consensus 123 ~~~~l~V~nl~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~----- 188 (270)
...+|||+||+..+ ++++|+++|+.||+|..|.++.+. |||||+|.+.++|+.|++.|+|..|.
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k--G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK--NCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC--CEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 45899999999998 799999999999999999998754 79999999999999999999999991
Q ss_pred ---CccccceeeeecCCCCC
Q 024262 189 ---NPWARGRITVKRYDRSP 205 (270)
Q Consensus 189 ---~~~~~~~i~v~~~~~~~ 205 (270)
+...++.|.|..+...+
T Consensus 211 e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TGGGGGGSCCCEEEECC---
T ss_pred cccccCCCCEEEEEEccCCC
Confidence 11138999999997543
No 366
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.43 E-value=8e-13 Score=90.57 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=66.9
Q ss_pred CCcceEEEeCCCC-----CCCHHHHHHHHHhcCCeeEEEEeeCCC-----CcEEEEEecChhhHHHHHHhcCCccccCcc
Q 024262 122 HSEYRVIVRGLPS-----SASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 122 ~~~~~l~V~nl~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~~~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
.++.+|+|.||.. .-++++|+++|++||.|..+.++.++. .|+|||+|.+.++|.+|+..|||..+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--- 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--- 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 3567999999973 237899999999999999999987642 479999999999999999999999998
Q ss_pred ccceeeeecCC
Q 024262 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|+.|.|..+.
T Consensus 83 -Gr~i~v~~a~ 92 (105)
T 2pe8_A 83 -GRVVKACFYN 92 (105)
T ss_dssp -TEECEEEECC
T ss_pred -CcEEEEEEcC
Confidence 9999998875
No 367
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=4.6e-13 Score=93.58 Aligned_cols=64 Identities=16% Similarity=0.337 Sum_probs=55.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC-------CCcEEEEEecChhhHHHHHHhc---CCccc
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-------EGTYGVVDYTNPEDMKYAIRKL---DDTEF 187 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-------~~~~afv~f~~~~~a~~a~~~l---~g~~~ 187 (270)
...+|||+|||..+++++|+++|++||.|. +.++.+. ..|||||+|.+.++|++|++.| +|..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 347999999999999999999999999999 7776653 3479999999999999999998 55533
No 368
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.33 E-value=4.6e-12 Score=82.36 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=62.4
Q ss_pred CCCCeEEEcCCC----CCcCH----HHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceE
Q 024262 4 RFSRTIYVGNLP----SDIRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 4 ~~s~~i~V~nlp----~~~t~----~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (270)
=|--||+|.-.+ .++-+ .+|.+.|.+||+|..+++..+ .+||+|.+.++|.+|+. |||..+.|+.|
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~L 78 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRTI 78 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEEE
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeEE
Confidence 345678887766 23434 678999999999999999854 49999999999999999 99999999999
Q ss_pred EEEecCCC
Q 024262 76 RVELAHGG 83 (270)
Q Consensus 76 ~v~~~~~~ 83 (270)
+|+++.+.
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99998765
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.33 E-value=3.4e-12 Score=87.49 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=64.7
Q ss_pred CcceEEEeCCC--CCCC--------HHHHHHHHHhcCCeeEEEEeeCCC------CcEEEEEecChhhHHHHHHhcCCcc
Q 024262 123 SEYRVIVRGLP--SSAS--------WQDLKDHMRKAGDVCFAEVSRDSE------GTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 123 ~~~~l~V~nl~--~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~------~~~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
++..|.|.|+- ..+. +++|+++|++||.|..+.++.+.. .|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 45789999983 3333 368999999999999999987753 3799999999999999999999999
Q ss_pred ccCccccceeeeecCC
Q 024262 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
+. |+.|.+.+..
T Consensus 84 f~----GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FA----NRVVVTKYCD 95 (105)
T ss_dssp ET----TEECEEEEEC
T ss_pred eC----CCEEEEEEeC
Confidence 98 9999988764
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.30 E-value=9.2e-12 Score=86.33 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=66.3
Q ss_pred CCcceEEEeCCCCCCC----------HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcc
Q 024262 122 HSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
.++..|.+.|+-.... +++|+++|++||.|..+.+..+...|++||+|.+.++|.+|++.|||..+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--- 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA--- 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET---
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 4567899998754332 357899999999999999988776789999999999999999999999999
Q ss_pred ccceeeeecCC
Q 024262 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|+.|.+.+..
T Consensus 82 -GR~i~v~~~~ 91 (114)
T 3s6e_A 82 -GKMITAAYVP 91 (114)
T ss_dssp -TEECEEEEEC
T ss_pred -CEEEEEEEEc
Confidence 9999998865
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.30 E-value=5.6e-12 Score=88.06 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=65.6
Q ss_pred CcceEEEeCCCCC--C---CHHHHHHHHHhcCCeeEEEEeeCCCC--------cEEEEEecChhhHHHHHHhcCCccccC
Q 024262 123 SEYRVIVRGLPSS--A---SWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~V~nl~~~--~---~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
++.+|+|.|+-.. + .+++|+++|++||.|..|.|+.+..+ |++||+|.+.++|.+|+..|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 5689999998532 2 36899999999999999999887542 69999999999999999999999999
Q ss_pred ccccceeeeecCC
Q 024262 190 PWARGRITVKRYD 202 (270)
Q Consensus 190 ~~~~~~i~v~~~~ 202 (270)
|+.|.+.+..
T Consensus 98 ---GR~i~v~~~~ 107 (118)
T 3ue2_A 98 ---GRKVVAEVYD 107 (118)
T ss_dssp ---TEECEEEEEC
T ss_pred ---CcEEEEEEcC
Confidence 9999988764
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.26 E-value=9e-12 Score=102.60 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=59.5
Q ss_pred CCCCcceEEEeC--CCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024262 120 SRHSEYRVIVRG--LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 120 ~~~~~~~l~V~n--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...++.+|||+| |+..+++++|+++|++||.|..|.+.. ..|||||+|.+.++|++|++.|||.++.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 345678999999 578999999999999999999887765 3479999999999999999999999884
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.24 E-value=3.6e-12 Score=87.24 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=58.4
Q ss_pred EeCCCCCCCHHHHHHHH------------HhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccc
Q 024262 129 VRGLPSSASWQDLKDHM------------RKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 129 V~nl~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~---~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
+.+|+..+++++|+++| ++||.|..+.++.+.. .|||||+|.+.++|.+|+..|||..+. |
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN----G 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET----T
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC----C
Confidence 45677777777776666 9999999999988753 379999999999999999999999998 9
Q ss_pred ceeeeecC
Q 024262 194 GRITVKRY 201 (270)
Q Consensus 194 ~~i~v~~~ 201 (270)
+.|.|.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99988764
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=2.2e-10 Score=77.38 Aligned_cols=74 Identities=14% Similarity=0.130 Sum_probs=60.3
Q ss_pred ceEEEeCCC-------CCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 125 YRVIVRGLP-------SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 125 ~~l~V~nl~-------~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..|.|.-.. ..+++++|+++|++||.|..|.++. ...|||||+|++.++|..|++.+++. . ++.|.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~~--~----g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVGL--V----DNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCBC--S----SSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCCC--C----CCeEE
Confidence 466665543 5689999999999999999999884 44579999999999999999986663 3 78899
Q ss_pred eecCCCCC
Q 024262 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.+++..+
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99886543
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=2.5e-11 Score=79.21 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=60.6
Q ss_pred CCCCeEEEcCCCCC-----cCH----HHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCce
Q 024262 4 RFSRTIYVGNLPSD-----IRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~s~~i~V~nlp~~-----~t~----~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
=|--||+|.-++.. +-+ .+|.+.|.+||+|..+++..+ -+||+|.+.++|.+||. |||..|.|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 35568899887643 333 568899999999999999865 39999999999999999 9999999999
Q ss_pred EEEEecC
Q 024262 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
|+|.+..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998743
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=2.9e-10 Score=78.88 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=63.6
Q ss_pred CCCCcceEEEeCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecC-hhhHHHHHHhcC--CccccCccccce
Q 024262 120 SRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTN-PEDMKYAIRKLD--DTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~V~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~-~~~a~~a~~~l~--g~~~~~~~~~~~ 195 (270)
.-..++.|+|+||+.. ++.++|+++|+.||.|.+|.+..+.. .|||.|.+ .++|..|+.+|+ +..|. +..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~----g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLR----NKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTT----SSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEe----CcE
Confidence 3455689999999999 99999999999999999999988875 79999999 799999999995 55665 555
Q ss_pred eeeec
Q 024262 196 ITVKR 200 (270)
Q Consensus 196 i~v~~ 200 (270)
++++.
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.02 E-value=6.4e-10 Score=86.95 Aligned_cols=77 Identities=25% Similarity=0.285 Sum_probs=63.4
Q ss_pred CCeEEEcCCCC-----CcCHHHHHHHhhcccceEEEEEec-------CCCCCcEEEEEEcCHHHHHHHHHhcCCccccCc
Q 024262 6 SRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKI-------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 6 s~~i~V~nlp~-----~~t~~~l~~~F~~~G~v~~~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
+..+.+.|+-. .-.+++|.+.|++||.|..+.|.. ++.++|++||+|.+.++|.+|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44555555522 245788999999999999999842 236789999999999999999999999999999
Q ss_pred eEEEEecCC
Q 024262 74 RLRVELAHG 82 (270)
Q Consensus 74 ~l~v~~~~~ 82 (270)
.|.|.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.96 E-value=4e-09 Score=70.13 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=67.9
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcc-----cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+..++|-|-|||..++++.|+.|+..+ |.|..|.+..+ -+-|+|+|.+...|-+|.-.|||..|.|++|.|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 457899999999999999999999999 99999999877 5679999999999999988899999999999997
Q ss_pred ec
Q 024262 79 LA 80 (270)
Q Consensus 79 ~~ 80 (270)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 53
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=2.6e-09 Score=69.40 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=59.8
Q ss_pred ceEEEeCCC----CCCCH----HHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccee
Q 024262 125 YRVIVRGLP----SSASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 125 ~~l~V~nl~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.+|+|.-.+ ..+.+ .+|.+.|..||.|..+++..+. +||+|.+.++|.+|++ |||..+. |+.|
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~----Gr~L 78 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELL----NRTI 78 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEET----TEEE
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeC----CeEE
Confidence 567776655 23444 5799999999999999999974 9999999999999998 9999999 9999
Q ss_pred eeecCCCC
Q 024262 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
+|..+...
T Consensus 79 kV~lkt~d 86 (91)
T 2dnr_A 79 TIALKSPS 86 (91)
T ss_dssp EEEECCCS
T ss_pred EEEeCCCC
Confidence 99987643
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=1.8e-08 Score=65.75 Aligned_cols=70 Identities=9% Similarity=0.188 Sum_probs=59.3
Q ss_pred CcceEEEeCCCCC-----CCH----HHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccc
Q 024262 123 SEYRVIVRGLPSS-----ASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 123 ~~~~l~V~nl~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
+..+|+|.-++.. +.+ .+|.+.|..||.|..+++..+. +||+|.+.++|.+|++ |+|.++. +
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~----G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK----G 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET----T
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC----C
Confidence 3468888877643 333 5689999999999999999984 9999999999999998 9999999 9
Q ss_pred ceeeeecC
Q 024262 194 GRITVKRY 201 (270)
Q Consensus 194 ~~i~v~~~ 201 (270)
+.|+|...
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99998764
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=2.6e-07 Score=61.07 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=62.8
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhc---c--cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYK---Y--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~---~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.-.++|.|.|||+.+.++.|.-+|+. - |+|..|.... +-|+|+|.+.+.|+..|+ -..+.|.+..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 34679999999999999999999987 2 5899888753 679999999999999999 44688999999998
Q ss_pred ecCCC
Q 024262 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
+....
T Consensus 80 P~~~~ 84 (104)
T 2dhx_A 80 PAPPR 84 (104)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 75544
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.55 E-value=1.4e-07 Score=73.62 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=55.3
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeeCCCC--------cEEEEEecChhhHHHHHHhcCCccccCccccceeeeecCC
Q 024262 136 ASWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~~~~~~~~--------~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
-.+++|.+.|++||.|..+.+..+..+ |++||+|.+.++|.+|+..|||..+. |+.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA----GRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC----CeEEEEEEcC
Confidence 346789999999999999999855332 69999999999999999999999999 9999988765
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=1.6e-06 Score=57.54 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCCCeEEEcCCCCCc-C----HHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 4 RFSRTIYVGNLPSDI-R----EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~-t----~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.-.++|+|+||+..+ . .+.++.+|..|+++..+...+. -.=..|.|.++++|.+|-..|++..|.|+.|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 446789999998864 3 2567899999999988888654 2347899999999999999999999999999999
Q ss_pred ecCCC
Q 024262 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
+++..
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99854
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.51 E-value=9.2e-07 Score=58.90 Aligned_cols=72 Identities=11% Similarity=0.075 Sum_probs=65.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHHHhc-----CCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceee
Q 024262 123 SEYRVIVRGLPSSASWQDLKDHMRKA-----GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~V~nl~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...+|-+-|||..++++.|+.+++.+ |.+..+.+..+.. -|+|+|.+...|.+|.-.|+|.+|. ++.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~----gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQ----GKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEET----TEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeec----CeEEE
Confidence 35789999999999999999999999 9999998888774 7999999999999999999999999 88887
Q ss_pred eec
Q 024262 198 VKR 200 (270)
Q Consensus 198 v~~ 200 (270)
+..
T Consensus 94 ~gT 96 (117)
T 2l9w_A 94 SGT 96 (117)
T ss_dssp EEC
T ss_pred ecC
Confidence 643
No 385
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.11 E-value=1.2e-05 Score=52.49 Aligned_cols=66 Identities=17% Similarity=0.226 Sum_probs=55.3
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-----CCCCcEEEEEEcCHHHHHHHHHhcCCccccC
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
++|.|++||+.+|++++.+.+..+..+........ .....-|||.|.+.+++....+.++|..|-+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 58999999999999999999999888777766432 1234569999999999999999999988743
No 386
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.06 E-value=4e-05 Score=52.39 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=60.4
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccC-ceEEEEecC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-CRLRVELAH 81 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~l~v~~~~ 81 (270)
..+.|.|-+.|+.. .+.|...|++||+|.+.... .......|.|.+..+|++||. .||..|+| -.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 36789999999885 67888899999999988762 235799999999999999999 89999974 677888764
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.01 E-value=1.2e-05 Score=52.50 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=45.7
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.+.++| ++|+.+...||.++|+.||.| .|.++.+ .-|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC----CeEEEEecCHHHHHHHHHhc
Confidence 567788 999999999999999999943 3555554 47999999999999999966
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=98.01 E-value=1.3e-05 Score=52.42 Aligned_cols=55 Identities=16% Similarity=0.344 Sum_probs=46.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+.++| ++|+.+...||.++|+.||. ..|.++.+ .-|||.|.+++.|..|+..+.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred CeEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 356777 99999999999999999993 34555554 479999999999999999764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.84 E-value=9.2e-05 Score=49.14 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=61.9
Q ss_pred ceEEEeCCCCCCC-----HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccceeeee
Q 024262 125 YRVIVRGLPSSAS-----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~V~nl~~~~~-----~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
++|+|.||+..+- .+.++++|..|+++......+.-. -..|.|.++++|.+|...||+..+. |..+++-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~----g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFL----GKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEET----TEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceec----CceeEEE
Confidence 6899999987662 257899999999998877776543 5789999999999999999999999 8899998
Q ss_pred cCC
Q 024262 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
.+.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 886
No 390
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.64 E-value=0.00031 Score=46.38 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=47.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHh-----cCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHh
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRK-----AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~-----~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~ 181 (270)
..+|.|.|||..+.++.|+-+|+. -|+|..++... +-|+|+|.+.+.|+..+++
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 379999999999999999999988 25788888766 3899999999999999886
No 391
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.61 E-value=0.00046 Score=45.00 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=44.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 183 (270)
..++| ++|..+...||.++|+.||.|. |..+.+- .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45556 9999999999999999999554 4555554 89999999999999998764
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.53 E-value=0.0006 Score=44.43 Aligned_cols=64 Identities=19% Similarity=0.382 Sum_probs=55.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC------cEEEEEecChhhHHHHHHhcCCcccc
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.+|.|.+||+.+|++++.+.+.....+........... .-|||.|.+.+++..-.+.++|..+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 47899999999999999999999988877776665432 27999999999999999999999886
No 393
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.47 E-value=0.00015 Score=47.55 Aligned_cols=68 Identities=19% Similarity=0.238 Sum_probs=51.9
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecC-----CCCCcEEEEEEcCHHHHHHHHHhcCCccccC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.+-+|.|+.||+.+|++++.+.++.+-++........ ...-.-|||.|.+++++....+.++|..|-+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 4678999999999999999988887655443333221 1123459999999999999999999988743
No 394
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.34 E-value=0.00044 Score=47.88 Aligned_cols=75 Identities=24% Similarity=0.286 Sum_probs=56.3
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEE-Eec---------------CC-CCCcEEEEEEcCHHHHHHHHHhcCC
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKI---------------PP-RPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~-~~~---------------~~-~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
....|.|-+.|+. ....+.+.|++||.|.+-. +.. .. .......|+|.++.+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~-~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPET-MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGG-GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHH-HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 4567888888665 4567788999999987621 110 00 124677999999999999999 999
Q ss_pred ccccCceEEEEecC
Q 024262 68 YNFDGCRLRVELAH 81 (270)
Q Consensus 68 ~~~~g~~l~v~~~~ 81 (270)
..|.|..|-|.+..
T Consensus 84 ~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 84 AVFNGVLLGVIPYT 97 (132)
T ss_dssp CEETTEECEEEECC
T ss_pred eEeCcEEEEEEECC
Confidence 99999988888875
No 395
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.29 E-value=0.00012 Score=62.51 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=43.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-++|+|. .|..+++.+|.++|++||+|.++.+..+. ..||.|||.+.++|..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 4789997 79999999999999999999999987643 4799999999999998877
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.16 E-value=0.00088 Score=43.85 Aligned_cols=54 Identities=20% Similarity=0.252 Sum_probs=44.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 183 (270)
..++| ++|..+...||.++|+.||.| .|..+.+- .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 34555 999999999999999999944 35555554 89999999999999999764
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.15 E-value=0.0025 Score=43.48 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=52.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024262 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 122 ~~~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
....-|.|.++|... ...|..+|++||.|+.... ....+...|.|.+..+|++|+. .||..+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 345789999999985 6678889999999988776 3334699999999999999999 5888876
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.52 E-value=0.0035 Score=41.10 Aligned_cols=65 Identities=18% Similarity=0.336 Sum_probs=50.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC------cEEEEEecChhhHHHHHHhcCCccccC
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------~~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
.+|.|..||+.+|++++.+.+...-.+.+......... .-|||.|.+.++...-.+.++|..+.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 68999999999999998888776655433333322211 269999999999999999999998863
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.63 E-value=0.0087 Score=51.12 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=42.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHh
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~ 181 (270)
...|+|. .|..+++.+|.++|++||+|..+.+..+. +-||.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHhc
Confidence 4689997 79999999999999999999998887654 34999999999999877653
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.02 E-value=0.091 Score=36.37 Aligned_cols=62 Identities=21% Similarity=0.312 Sum_probs=45.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeE-EEEee--------------CC---CCcEEEEEecChhhHHHHHHhcCCcc
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSR--------------DS---EGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~--------------~~---~~~~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
..|.|-+.|+..... +-+.|++||.|.. ..... -+ .++...|+|.+..+|.+|+. .||..
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 578888897766555 5678999999866 21111 00 13478999999999999998 68888
Q ss_pred cc
Q 024262 187 FR 188 (270)
Q Consensus 187 ~~ 188 (270)
+.
T Consensus 86 i~ 87 (132)
T 3p3d_A 86 FN 87 (132)
T ss_dssp ET
T ss_pred eC
Confidence 77
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.69 E-value=0.16 Score=44.21 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=45.0
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+.++|+ +|..+...+|.++|+.||.| +|.+.. ...|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 4566776 99999999999999999954 455543 3579999999999999999875
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.65 E-value=0.55 Score=29.03 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=44.8
Q ss_pred eEEEcCCCC-CcCHHHHHHHhhccc-----ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecC
Q 024262 8 TIYVGNLPS-DIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 8 ~i~V~nlp~-~~t~~~l~~~F~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+|+|..--. .+.+.+|..++..-+ .|-.|.+. -.|.||+-... .|..++..|++..+.|+.+.|+.+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 566643322 377888888777443 56777776 35899998854 4677888899999999999998764
No 403
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=89.21 E-value=1.2 Score=38.75 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=45.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC
Q 024262 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 125 ~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g 184 (270)
..++|+ +|..+...+|.++|+.||.+ .|..+.+. .|||.|.+.+.|..++..+..
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 466665 99999999999999999954 45555543 899999999999999998864
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=88.42 E-value=3.3 Score=26.20 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=50.4
Q ss_pred CCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEe
Q 024262 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+|-|.|-|||..+-..++.-.....|---.+... -|.|.|.|.+.++-..|+..|-+. .+.+|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 468899999999998888887666666644445444 468999999999999999765322 244555554
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=85.51 E-value=5.1 Score=25.35 Aligned_cols=56 Identities=14% Similarity=0.273 Sum_probs=48.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024262 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 124 ~~~l~V~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~ 183 (270)
.+.+.|-|+|..+-..++--.....|.-..|..+. |.|+|.|.+.++..-|+.+|-
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqkll 67 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLL 67 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHH
Confidence 47888999999999999988888889887787766 479999999999999998863
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=75.00 E-value=4.4 Score=29.40 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=39.0
Q ss_pred eEEEcCCCCC---------cCHHHHHHHh--hcccceEEEEEecCCCCCcEEEEEEcCHH-HHHHHHH
Q 024262 8 TIYVGNLPSD---------IREYEVEDLF--YKYGRILDIELKIPPRPPCYCFVEFENAR-DAEDAIR 63 (270)
Q Consensus 8 ~i~V~nlp~~---------~t~~~l~~~F--~~~G~v~~~~~~~~~~~~g~afV~f~~~~-~a~~A~~ 63 (270)
++.|-|+|.. .+..+|.+.| ..|.++.-..+.......|+|.|+|..-- --..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 4677788872 3457899977 89988776555555556889999998543 3444555
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=67.66 E-value=1.2 Score=31.77 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=19.5
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEEc
Q 024262 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 21 ~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
+|+.+||...|.|+.+... +||+||+..
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 5677888888988876543 899999976
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=56.67 E-value=34 Score=21.56 Aligned_cols=54 Identities=9% Similarity=0.183 Sum_probs=37.3
Q ss_pred EEcCCCCCcCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024262 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+-.+...++..+|++.++. || .|..|.........--|||.+....+|.....
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 34446678899999887775 55 67777665443334459999998887776544
No 409
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=51.21 E-value=35 Score=19.97 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=42.2
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..++.|.++.-..=...|.+.+.. ..|..+.+... .+.+.|+|.+.++...||..+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHc
Confidence 457889999877777888888888 77888887433 456788888677777788743
No 410
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=50.33 E-value=45 Score=21.01 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=41.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHhc
Q 024262 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l 182 (270)
..|+-......+..+|++.++. |+ .|..+..+.-+.+ ..|+|.+..-.+|.....++
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 3455556788999999999987 55 5666766554433 47999999988888776554
No 411
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=47.70 E-value=51 Score=20.90 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=25.9
Q ss_pred eEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 024262 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
|..+.+. ..-+||.||++...++...++..+.|.
T Consensus 40 i~~v~vP--~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILAS--ESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEEC--TTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEe--cccCCEEEEEEecchhHHHHHHCCCCc
Confidence 5555443 236899999999999999999877663
No 412
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.17 E-value=12 Score=22.24 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=13.6
Q ss_pred cceEEEEEecCCCCCcEEEEEEcCH
Q 024262 31 GRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|+|..|.. .+..|||.|.+.
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTT
T ss_pred eEEEEEec-----CCcEEEEEEccC
Confidence 55655542 267899999864
No 413
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=46.72 E-value=53 Score=23.77 Aligned_cols=49 Identities=18% Similarity=0.283 Sum_probs=34.7
Q ss_pred ceEEEeCCCCC---------CCHHHHHHHH--HhcCCeeEEEEeeCCCC--cEEEEEecChhh
Q 024262 125 YRVIVRGLPSS---------ASWQDLKDHM--RKAGDVCFAEVSRDSEG--TYGVVDYTNPED 174 (270)
Q Consensus 125 ~~l~V~nl~~~---------~~~~~l~~~f--~~~g~v~~~~~~~~~~~--~~afv~f~~~~~ 174 (270)
..++|.|+|.. ....+|.+.| ..|.++. +....+..+ |+|.|+|.+--.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChH
Confidence 47788898872 3346899977 8888876 444444444 699999987643
No 414
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=44.28 E-value=81 Score=22.20 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=40.8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHhc
Q 024262 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~l 182 (270)
..|+-......+..+|++.++. |+ .|..|..+.-+.+ .-|||.+..-.+|.+...++
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 3455556788899999998877 56 5666766655443 37999999888887765543
No 415
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=43.87 E-value=14 Score=21.97 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=9.3
Q ss_pred CcEEEEEEcCH
Q 024262 45 PCYCFVEFENA 55 (270)
Q Consensus 45 ~g~afV~f~~~ 55 (270)
.+.|+|.|.+-
T Consensus 41 ~gtC~V~F~D~ 51 (66)
T 2eqj_A 41 KQSCFIIFEDS 51 (66)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 68999999863
No 416
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=42.83 E-value=30 Score=22.79 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=27.0
Q ss_pred eEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcc
Q 024262 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
|..+.. ....+||-|||=.++.++..|+..+.+..
T Consensus 41 I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 41 IKSVVA--PEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCEEEE--CTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred eEEEEe--cCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 444433 34469999999999999999999776654
No 417
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=42.36 E-value=16 Score=28.84 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.8
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEE
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~ 38 (270)
..+.|+|||.+++..-|.+++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46799999999999999999986555655544
No 418
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=42.29 E-value=14 Score=22.56 Aligned_cols=20 Identities=30% Similarity=0.637 Sum_probs=13.7
Q ss_pred cceEEEEEecCCCCCcEEEEEEcCH
Q 024262 31 GRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|.|..|... +..|||.|.+.
T Consensus 45 GTI~kV~~~-----~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDSA-----REVCLVQFEDD 64 (79)
T ss_dssp EEEEEEETT-----TTEEEEEETTS
T ss_pred EEEEEeccC-----CCEEEEEEcCC
Confidence 566655432 67899999864
No 419
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=41.09 E-value=89 Score=21.77 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=40.6
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHh
Q 024262 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~ 181 (270)
..|+-......+..+|++.++. |+ .|..|..+.-+.+ .-|||.+..-.+|.+...+
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 4555556788999999998877 56 5666766555443 3799999988888776554
No 420
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=39.55 E-value=98 Score=21.83 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=40.1
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHh
Q 024262 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~ 181 (270)
..|+-......+..+|++.++. |+ .|..|..+.-+.+ .-|||.+..-.+|.+....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 4555556788888999888877 56 5666766654443 4799999988888776544
No 421
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=38.16 E-value=26 Score=27.50 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=24.6
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEE
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~ 38 (270)
.-+.|+|||.+++...|.+++.. +.+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46789999999999999999987 55554433
No 422
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=37.89 E-value=53 Score=27.70 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=40.8
Q ss_pred EEEcCCCCCc----CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCce
Q 024262 9 IYVGNLPSDI----REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 9 i~V~nlp~~~----t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
-+||||+.-. ....+.++..+||+|..+.+- +.-+|-..+++.|+.++. -++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 3688876432 135677888899999888772 356777889999999987 3444444443
No 423
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=37.84 E-value=74 Score=19.94 Aligned_cols=55 Identities=15% Similarity=0.162 Sum_probs=39.7
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHH
Q 024262 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIR 180 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~ 180 (270)
.-|+-.....++..+|++.++. |+ .|..+..+.-+.+ ..|+|.+..-.+|.....
T Consensus 23 n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 23 NKLQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 3455556789999999999976 66 5667776655443 479999988877665544
No 424
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=37.66 E-value=47 Score=25.31 Aligned_cols=78 Identities=14% Similarity=0.218 Sum_probs=45.1
Q ss_pred CCeEEEcCCCCCcC--HHHHHHHhhc-----ccc--------eEEEEEec---C--CCCCcEEEEEEcCHH---HHHHHH
Q 024262 6 SRTIYVGNLPSDIR--EYEVEDLFYK-----YGR--------ILDIELKI---P--PRPPCYCFVEFENAR---DAEDAI 62 (270)
Q Consensus 6 s~~i~V~nlp~~~t--~~~l~~~F~~-----~G~--------v~~~~~~~---~--~~~~g~afV~f~~~~---~a~~A~ 62 (270)
-+.|.|-|||.... +.-+..+|.. |.. |..+.-.. + ......-.|.|.... -..+|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36899999999865 4334444432 322 22222211 1 112334667776554 455566
Q ss_pred HhcCCccccCceEEEEecCCC
Q 024262 63 RGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 63 ~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.....+.+.|.+|.+...-+.
T Consensus 132 R~k~~vtykG~pIrlsaDfSa 152 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVDLSA 152 (233)
T ss_dssp HTTSCEEETTEEEEEEECCCH
T ss_pred HHhcccccCCCceEEeCCCCH
Confidence 656678899999999876543
No 425
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=37.29 E-value=60 Score=18.73 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=41.9
Q ss_pred CCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEc----CHHHHHHHHHhc
Q 024262 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE----NARDAEDAIRGR 65 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 65 (270)
..++.|.|+....=...|.+.+.....|..+.+... .+.+.|+|. +.++...|+..+
T Consensus 3 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL---QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG---GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 356888898777667888888888877888877443 457889885 566777777743
No 426
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=35.10 E-value=81 Score=21.98 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=34.2
Q ss_pred EcCCCCCcCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHH
Q 024262 11 VGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 11 V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
+--+...++..+|.+.++. || .|..|.........--|||.+....+|....
T Consensus 83 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvA 136 (142)
T 3u5e_X 83 VFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIA 136 (142)
T ss_dssp EEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHH
T ss_pred EEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHH
Confidence 3345668888888877764 45 6777766443333445999998777766543
No 427
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=34.60 E-value=37 Score=26.22 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=24.2
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEE
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~ 38 (270)
..+.|+|||++++...|.+++.....+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 35889999999999999999886444444433
No 428
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=34.43 E-value=18 Score=28.11 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=25.0
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccceEEEEE
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~ 38 (270)
...|+|||.+++...|.+++.....+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 4589999999999999999987666655444
No 429
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=34.31 E-value=82 Score=22.17 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=33.9
Q ss_pred CCCCCcCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024262 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nlp~~~t~~~l~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-+...++..+|.+.++. |+ .|..|.........--|||.+....+|.....
T Consensus 93 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 93 YVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 45667888888877764 45 66777665433334459999987777766433
No 430
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=34.29 E-value=57 Score=21.23 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=42.0
Q ss_pred CCeEEEcCCCCCcCHHH--HHHHhh--------ccc-----ceEEEEEecC-----CCCCcEEEEEEcCHH---HHHHHH
Q 024262 6 SRTIYVGNLPSDIREYE--VEDLFY--------KYG-----RILDIELKIP-----PRPPCYCFVEFENAR---DAEDAI 62 (270)
Q Consensus 6 s~~i~V~nlp~~~t~~~--l~~~F~--------~~G-----~v~~~~~~~~-----~~~~g~afV~f~~~~---~a~~A~ 62 (270)
-+.|.|-+||....+.. +..||. ..+ .|..+.-... ........|.|.... -..+|.
T Consensus 3 r~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaa 82 (100)
T 2w7a_A 3 MGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 82 (100)
T ss_dssp TTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36799999998733222 333332 223 2344433211 112345677776544 556666
Q ss_pred HhcCCccccCceEEEEe
Q 024262 63 RGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 63 ~~l~~~~~~g~~l~v~~ 79 (270)
.....+.+.|.+|.+..
T Consensus 83 r~k~~vtykg~pirlsa 99 (100)
T 2w7a_A 83 REKGRVTLKGKPIRLTV 99 (100)
T ss_dssp HHHCCEEETTEEEEEEE
T ss_pred HHhCceeeCCcceeecC
Confidence 65667889999998864
No 431
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=33.77 E-value=37 Score=25.11 Aligned_cols=48 Identities=15% Similarity=0.136 Sum_probs=33.7
Q ss_pred cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcc
Q 024262 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
+.+++|.+....|.+.. ...+.-+..-||+|.++++....+..|.|+.
T Consensus 65 ~~~~~I~~Ei~aYnpLi----P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie 112 (194)
T 3fjv_A 65 FDEDGIQAELDAYLPLV----PDGSNLKATLQIEYENETQRRAALARLVGIE 112 (194)
T ss_dssp CSHHHHHHHHHHHGGGC----CCSSEEEEEEEECCSSHHHHHHHHHHTTTGG
T ss_pred CCHHHHHHHHHHhcccC----CCCCcEEEEEEEEcCCHHHHHHHHHHhcCcc
Confidence 35566666666665532 1122335678999999999999999999854
No 432
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.35 E-value=90 Score=22.13 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=35.6
Q ss_pred EEcCCCCCcCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024262 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~V~nlp~~~t~~~l~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+-.+...+|..+|.+.++. || .|..|.........--|||.+...++|.....
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 34446678888888887764 55 67777665432234459999988777655444
No 433
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=33.34 E-value=26 Score=22.60 Aligned_cols=22 Identities=23% Similarity=0.095 Sum_probs=15.6
Q ss_pred EcCCCCCcCHHHHHHHh-hcccc
Q 024262 11 VGNLPSDIREYEVEDLF-YKYGR 32 (270)
Q Consensus 11 V~nlp~~~t~~~l~~~F-~~~G~ 32 (270)
|.+|.+.+|..||...+ ...|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 34788889999998855 43453
No 434
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=32.21 E-value=88 Score=19.10 Aligned_cols=58 Identities=10% Similarity=0.124 Sum_probs=40.8
Q ss_pred CCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEc----CHHHHHHHHHhc
Q 024262 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE----NARDAEDAIRGR 65 (270)
Q Consensus 5 ~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 65 (270)
...++.|.++....-...|...+.....|..+.+... .+.+.|.|. +.++...++..+
T Consensus 3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~---~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE---NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT---TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc---CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 3456788888666556778888888877888887543 467888885 345666777744
No 435
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=31.97 E-value=43 Score=30.02 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=38.9
Q ss_pred CCCCCcCHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhc
Q 024262 13 NLPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 13 nlp~~~t~~~l~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..+.+.+--||.++|- .+|-|..+.|... .....++++.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3455555557888884 5789999888543 333567899999999999988765
No 436
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=31.82 E-value=29 Score=19.94 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=13.2
Q ss_pred cceEEEEEecCCCCCcEEEEEEcCH
Q 024262 31 GRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|+|..|.. ....|+|.|.+.
T Consensus 22 GtI~~V~~-----~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDS-----AREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEET-----TTTEEEEEETTS
T ss_pred EEEEEEec-----CCCEEEEEEcCC
Confidence 55655532 256899999864
No 437
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=31.69 E-value=72 Score=22.50 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=33.4
Q ss_pred CCCCCcCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024262 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nlp~~~t~~~l~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+...++..+|.+.++. || .|..|.........--|||.+....+|.....
T Consensus 95 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 95 IVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 35567787888766664 44 67777665433334469999988877766543
No 438
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=31.64 E-value=26 Score=15.72 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=10.3
Q ss_pred CHHHHHHHhhccc
Q 024262 19 REYEVEDLFYKYG 31 (270)
Q Consensus 19 t~~~l~~~F~~~G 31 (270)
.-.++..+|.++|
T Consensus 13 aikqvkklfkkwg 25 (26)
T 1ytr_A 13 AIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcC
Confidence 3578889999886
No 439
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=31.36 E-value=74 Score=17.94 Aligned_cols=55 Identities=9% Similarity=0.103 Sum_probs=39.5
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEc---CHHHHHHHHHh
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE---NARDAEDAIRG 64 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~---~~~~a~~A~~~ 64 (270)
.++.|.|+.-..-...|.+.+.....|..+.+... .+.+.|+|. ++++...++..
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCHHHHHHHHHH
Confidence 46788888777667888889988877888887543 456788884 34555666653
No 440
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=29.60 E-value=53 Score=24.43 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=25.6
Q ss_pred CCCCcEEEEEEcCHHHHHHHHHhcCCcccc
Q 024262 42 PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+..+||-|||=.++.++..|+..+.+....
T Consensus 146 d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 146 DNYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp TTSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred CCCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 346999999999999999999998886443
No 441
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=28.82 E-value=38 Score=26.06 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=23.6
Q ss_pred CeEEEcCCCCCcCHHHHHHHhhcccceEEE
Q 024262 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDI 36 (270)
Q Consensus 7 ~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~ 36 (270)
..+.|+|||.+++...|.+++.....+..+
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~ 125 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLA 125 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceE
Confidence 358899999999999999999865444443
No 442
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=27.65 E-value=42 Score=29.07 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=28.6
Q ss_pred HHHHHh--hcccceEEEEEecCCCC--CcEEEEEEcCHHHHHHHH
Q 024262 22 EVEDLF--YKYGRILDIELKIPPRP--PCYCFVEFENARDAEDAI 62 (270)
Q Consensus 22 ~l~~~F--~~~G~v~~~~~~~~~~~--~g~afV~f~~~~~a~~A~ 62 (270)
+|..+| +.+|-|..+.+.....+ ...+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456677 36899999988543333 346789999988876644
No 443
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.36 E-value=1.7e+02 Score=20.76 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=39.9
Q ss_pred eEEEeCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHh
Q 024262 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~V~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-~~afv~f~~~~~a~~a~~~ 181 (270)
..|+-......+..+|++.++. |+ .|..|..+.-..+ .-|+|.+..-.+|......
T Consensus 94 n~yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~k 152 (156)
T 2zkr_s 94 NTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVANK 152 (156)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHHH
T ss_pred CcEEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHHh
Confidence 3455567788999999999976 66 5666766554433 3799999888777665544
No 444
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=27.19 E-value=1.1e+02 Score=19.58 Aligned_cols=49 Identities=12% Similarity=0.259 Sum_probs=37.1
Q ss_pred CCCCCcCHHHHHHHhh-cccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024262 13 NLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 13 nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.++..+.-++|.+-.. .||.-.++....+ --.|-..+.++..+||+.|+
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~nn-----EL~iPL~~Q~DLDkAvelLD 84 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTNN-----ELVIPLTTQDDLDKAVELLD 84 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEET-----TEEEECCCHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-----eeEEecccHHHHHHHHHHhc
Confidence 4566778888876554 6888888877643 36788899999999999665
No 445
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=25.86 E-value=65 Score=20.88 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=18.4
Q ss_pred cCHHHHHHHhhcccceEEEEEe
Q 024262 18 IREYEVEDLFYKYGRILDIELK 39 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~v~~~~~~ 39 (270)
.+++.|.++|+.+|.|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4678899999999999887774
No 446
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=25.74 E-value=1e+02 Score=19.44 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=44.2
Q ss_pred CCCCCcCHHHHHHHhh-cccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEEecCC
Q 024262 13 NLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 13 nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++..+.-++|.+-.. .||.-.++....+ --.|-..+.+|..+|++.|+ ....-+.|+|-....
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~nn-----EL~iPL~~Q~DLDkAvelLD-rs~~mkSLRIlL~~~ 83 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-----ELSILLKNQDDLDKAIDILD-RSSSMKSLRILLLSQ 83 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEECS-----SCEEECCSHHHHHHHHHHHH-HSTTTTEEEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-----eeEEeccCHHHHHHHHHHhc-cCccccceEEEEEcC
Confidence 4566788888876554 6888888877633 35678899999999999665 334445556555443
No 447
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.10 E-value=57 Score=26.71 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=19.7
Q ss_pred eEEEcCCCCCcCHHHHHHHhhc
Q 024262 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~ 29 (270)
...|+|||.+++..-|.+++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4799999999999999998875
No 448
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=24.75 E-value=1.3e+02 Score=19.48 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=20.8
Q ss_pred HHHHHhhcccceEEEEEecCCC-CCcEEEEEEcC
Q 024262 22 EVEDLFYKYGRILDIELKIPPR-PPCYCFVEFEN 54 (270)
Q Consensus 22 ~l~~~F~~~G~v~~~~~~~~~~-~~g~afV~f~~ 54 (270)
+|.+.+..+| |.+..|..++. ..-|+++++.+
T Consensus 28 Ev~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 28 ELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 4556667776 66666654432 34689999987
No 449
>2okq_A Hypothetical protein YBAA; YBAA protein, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 1.80A {Shigella flexneri} SCOP: d.58.4.18
Probab=24.70 E-value=1.4e+02 Score=20.69 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=28.6
Q ss_pred HHHHhhcccceEEEEEe----cCCCC--------------CcEEEEEEcCHHHHHHHHH
Q 024262 23 VEDLFYKYGRILDIELK----IPPRP--------------PCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 23 l~~~F~~~G~v~~~~~~----~~~~~--------------~g~afV~f~~~~~a~~A~~ 63 (270)
--++|..||.+.-+..- ..|+. --|.+|+|.+.+...++..
T Consensus 50 a~~vfke~GAl~~vEcWgdDVp~Gk~TsF~~AVkak~dEtVVFSWi~wPsKa~RDa~~~ 108 (141)
T 2okq_A 50 AAPLFKEFGALRIVECWASDVPDGKVTDFRMAVKAEENEEVVFSWIEYPSKEVRDAANQ 108 (141)
T ss_dssp HHHHHHHTTCSEEEEEEEEECCCCSSCCHHHHTTCCTTEEEEEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHhCCeeeeeeecccCCCCcccCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHH
Confidence 45789999977766552 22221 2379999999998888764
No 450
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=23.98 E-value=36 Score=20.71 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=8.4
Q ss_pred CcEEEEEEcC
Q 024262 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||+-.+
T Consensus 12 KGfGFI~~~d 21 (74)
T 2kcm_A 12 KKYGFIQGDD 21 (74)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 8999998764
No 451
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=23.20 E-value=26 Score=21.23 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=14.1
Q ss_pred CHHHHHHHhhcccceEEE
Q 024262 19 REYEVEDLFYKYGRILDI 36 (270)
Q Consensus 19 t~~~l~~~F~~~G~v~~~ 36 (270)
|--||.+++.+||.|+.+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 456899999999987653
No 452
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=23.15 E-value=53 Score=16.89 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=12.4
Q ss_pred CCcCHHHHHHHhhcc
Q 024262 16 SDIREYEVEDLFYKY 30 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~ 30 (270)
.+++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 468999999999864
No 453
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=22.95 E-value=1.1e+02 Score=17.18 Aligned_cols=60 Identities=15% Similarity=0.163 Sum_probs=41.6
Q ss_pred CCCCCCCeEEEcCCCCCcCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcC----HHHHHHHHHh
Q 024262 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN----ARDAEDAIRG 64 (270)
Q Consensus 1 ~~~~~s~~i~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~----~~~a~~A~~~ 64 (270)
|+ ....++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .+....++..
T Consensus 1 m~-~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 1 MG-DGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA---TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CC-CCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT---TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred CC-ceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHH
Confidence 43 45567899999777667778888888777888877543 4678888864 2344455553
No 454
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=22.75 E-value=87 Score=21.57 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=29.7
Q ss_pred EcCCCCCcCHHHHHHHhh-ccc--ceEEEEE-ec-----------C-CCCCcEEEEEEcC
Q 024262 11 VGNLPSDIREYEVEDLFY-KYG--RILDIEL-KI-----------P-PRPPCYCFVEFEN 54 (270)
Q Consensus 11 V~nlp~~~t~~~l~~~F~-~~G--~v~~~~~-~~-----------~-~~~~g~afV~f~~ 54 (270)
|-++..-++++++.+++. .++ .|..+.+ +. + ....+|.|+.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 555666799999999995 444 6777666 11 2 3445788888875
No 455
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=22.70 E-value=1e+02 Score=20.03 Aligned_cols=60 Identities=20% Similarity=0.192 Sum_probs=40.6
Q ss_pred CCCCCcCHHHHHHHhh-cccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccccCceEEEE
Q 024262 13 NLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 13 nlp~~~t~~~l~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.++..+.-++|.+-.. .||.-.++....+ --.|-..+.+|..+||+.|+- ...-+.|+|-
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~nn-----EL~IPL~~Q~DLDkAvelLDr-s~~mkSLRIl 106 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMNN-----ELSILLKNQDDLDKAIDILDR-SSSMKSLRIL 106 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEECS-----SCEEECCSHHHHHHHHHHHHH-CSSCCSEEEE
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEecc-----eEEEecccHHHHHHHHHHhcc-CccccceEEE
Confidence 4566778788876554 6888888777633 356778899999999997653 3333444443
No 456
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=22.47 E-value=74 Score=22.25 Aligned_cols=34 Identities=35% Similarity=0.353 Sum_probs=26.0
Q ss_pred eEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 024262 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
|..+.+.. .-+||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 45554432 35899999999999999999988774
No 457
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.43 E-value=88 Score=18.22 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.0
Q ss_pred CCCcEEEEEEcCH
Q 024262 43 RPPCYCFVEFENA 55 (270)
Q Consensus 43 ~~~g~afV~f~~~ 55 (270)
..+..|||.|.+.
T Consensus 33 ~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 33 SSKQSCLVTFEDN 45 (63)
T ss_dssp STTSEEEEEETTS
T ss_pred cCCCEEEEEEccC
Confidence 3477899999864
No 458
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=22.40 E-value=40 Score=19.93 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=7.5
Q ss_pred CcEEEEEEc
Q 024262 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 13 kGfGFI~~~ 21 (67)
T 3cam_A 13 KGFGFITPD 21 (67)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEecC
Confidence 899999854
No 459
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=22.29 E-value=41 Score=19.79 Aligned_cols=9 Identities=44% Similarity=0.763 Sum_probs=7.6
Q ss_pred CcEEEEEEc
Q 024262 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+-.
T Consensus 13 kGfGFI~~~ 21 (66)
T 1c9o_A 13 KGYGFIEVE 21 (66)
T ss_dssp TTEEEEEET
T ss_pred CCeEEEecC
Confidence 899999855
No 460
>3ced_A Methionine import ATP-binding protein METN 2; ABC transporter, NIL domain, structur genomics, PSI-2, protein structure initiative; 2.15A {Staphylococcus aureus subsp} SCOP: d.58.18.13
Probab=21.74 E-value=1.4e+02 Score=19.05 Aligned_cols=59 Identities=15% Similarity=0.048 Sum_probs=35.6
Q ss_pred eEEEcCCCCCcCHHHHHHHhhcccc---eEEEEEe-cCCCCCcEEEEEEcC--HHHHHHHHHhcC
Q 024262 8 TIYVGNLPSDIREYEVEDLFYKYGR---ILDIELK-IPPRPPCYCFVEFEN--ARDAEDAIRGRD 66 (270)
Q Consensus 8 ~i~V~nlp~~~t~~~l~~~F~~~G~---v~~~~~~-~~~~~~g~afV~f~~--~~~a~~A~~~l~ 66 (270)
.|.|.-....+.+-.|-++...||- |..-.|- ..+.+-|.-+|++.- .++..+|+..|.
T Consensus 22 lvrL~f~g~~~~~PvIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~~ai~~L~ 86 (98)
T 3ced_A 22 IVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELI 86 (98)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHTCCCEEEEEEEEEETTEEEEEEEEEESCCCHHHHHHHHHHHH
T ss_pred EEEEEECCCccCchHHHHHHHHHCCcEEEEEEEeEEeCCEeEEEEEEEEeCCCHHHHHHHHHHHH
Confidence 3444433344566667777777773 3333332 234556888888884 667778887664
No 461
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=21.72 E-value=1.1e+02 Score=19.93 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=41.8
Q ss_pred EEeCCCCCCCHHHHHHHH-HhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCc
Q 024262 128 IVRGLPSSASWQDLKDHM-RKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 128 ~V~nl~~~~~~~~l~~~f-~~~g~v~~~~~~~~~~~~~afv~f~~~~~a~~a~~~l~g~ 185 (270)
.|-.++..+.-++|+.-. ..||.-.++....+ -..|-..+.+|..+|++.|+-.
T Consensus 20 RIi~f~RPv~f~eL~~Kv~~~fGq~ldL~y~n~----EllIpl~sQeDLDkaIellDrs 74 (103)
T 2cu1_A 20 RILQFPRPVKLEDLRSKAKIAFGQSMDLHYTNN----ELVIPLTTQDDLDKAVELLDRS 74 (103)
T ss_dssp EEEEEESSCCHHHHHHHHHHHHSSCEEEEECSS----SSCEECCSHHHHHHHHHHHHHC
T ss_pred EEEeccCCccHHHHHHHHHHHhCCeeeEEEecc----eEEEeccCHHHHHHHHHHHccC
Confidence 445578889988887666 55898888777633 4678889999999999987655
No 462
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=21.45 E-value=43 Score=20.21 Aligned_cols=9 Identities=44% Similarity=0.641 Sum_probs=7.5
Q ss_pred CcEEEEEEc
Q 024262 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+-.
T Consensus 13 kGfGFI~~~ 21 (73)
T 3a0j_A 13 KGYGFIERE 21 (73)
T ss_dssp TTEEEEECT
T ss_pred CCEEEEecC
Confidence 899999854
No 463
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=21.14 E-value=1.5e+02 Score=24.84 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=30.4
Q ss_pred EEcCCCCC--cCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024262 10 YVGNLPSD--IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~V~nlp~~--~t~~~l~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+|||+..- -....+.++..+||+|..+.+ -+.-+|-..+++.++.++.
T Consensus 19 ~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~------g~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 19 LIGNAAAVGQAAHLSFARLARRYGDVFQIRL------GSCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ---------CCHHHHHHHHHHHHCSEEEEEE------TTEEEEEECSHHHHHHHHT
T ss_pred eeCchhhcCccHHHHHHHHHHHhCCEEEEEE------CCccEEEECCHHHHHHHHH
Confidence 56666432 124567788889999988776 2456788899999999885
No 464
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=21.07 E-value=56 Score=19.80 Aligned_cols=10 Identities=30% Similarity=0.491 Sum_probs=8.0
Q ss_pred CcEEEEEEcC
Q 024262 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||+-.+
T Consensus 14 KGfGFI~~~d 23 (74)
T 2k5n_A 14 KGFGFIKDEN 23 (74)
T ss_dssp TTEEEEEESS
T ss_pred CCeEEEecCC
Confidence 8999998654
No 465
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=20.43 E-value=68 Score=28.31 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=33.4
Q ss_pred CCCCcCHHHHHHHhh----cccceEEEEEecCCCC--CcEEEEEEcCHHHHHHHHHhcC
Q 024262 14 LPSDIREYEVEDLFY----KYGRILDIELKIPPRP--PCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 14 lp~~~t~~~l~~~F~----~~G~v~~~~~~~~~~~--~g~afV~f~~~~~a~~A~~~l~ 66 (270)
++.+.+.-+|..+|- .+|-|..+.+.....+ ...+++.|.+.++|..|+..+-
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 344434446676664 4678999888543322 4578899999999999887553
No 466
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.41 E-value=47 Score=19.52 Aligned_cols=10 Identities=20% Similarity=0.451 Sum_probs=8.1
Q ss_pred CcEEEEEEcC
Q 024262 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||+-.+
T Consensus 12 kGfGFI~~~~ 21 (66)
T 1g6p_A 12 KGYGFITKDE 21 (66)
T ss_dssp TTEEEEEETT
T ss_pred CCEEEEecCC
Confidence 8999998653
Done!