BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024263
         (270 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3QC5|X Chain X, Gspb
 pdb|3QC6|X Chain X, Gspb
          Length = 360

 Score = 27.3 bits (59), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%)

Query: 15  ADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTL 74
           A+G + +  G +    G+  N  VL   + ++ T   V  G  LVTS    T + LPL  
Sbjct: 72  ANGGVYNSGGAWNLYTGESVNNNVLRITTQVNDTGGEVKLGLRLVTSDKKITKTNLPLEF 131

Query: 75  GYIGAFGSG 83
             + A  +G
Sbjct: 132 SQVAATTNG 140


>pdb|4I8E|X Chain X, Gspb Plus Alpha-2,3-Sialyl (1-Thioethyl)galactose
          Length = 391

 Score = 27.3 bits (59), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 31/69 (44%)

Query: 15  ADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTL 74
           A+G + +  G +    G+  N  VL   + ++ T   V  G  LVTS    T + LPL  
Sbjct: 87  ANGGVYNSGGAWNLYTGESVNNNVLRITTQVNDTGGEVKLGLRLVTSDKKITKTNLPLEF 146

Query: 75  GYIGAFGSG 83
             + A  +G
Sbjct: 147 SQVAATTNG 155


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,086,410
Number of Sequences: 62578
Number of extensions: 260846
Number of successful extensions: 461
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 2
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)