Query 024263
Match_columns 270
No_of_seqs 117 out of 1291
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 03:17:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024263.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024263hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF02683 DsbD: Cytochrome C bi 100.0 3.3E-34 7.1E-39 250.2 22.3 206 53-259 1-210 (211)
2 COG0785 CcdA Cytochrome c biog 100.0 8.1E-32 1.8E-36 236.2 23.9 207 48-258 11-219 (220)
3 PRK00293 dipZ thiol:disulfide 100.0 2.1E-32 4.4E-37 270.1 21.6 220 45-267 164-386 (571)
4 COG4232 Thiol:disulfide interc 99.9 5E-27 1.1E-31 226.5 15.6 216 47-268 167-388 (569)
5 COG2836 Uncharacterized conser 99.9 9.1E-24 2E-28 182.5 22.2 201 50-261 6-217 (232)
6 PF13386 DsbD_2: Cytochrome C 99.9 3.9E-24 8.5E-29 185.1 18.7 189 53-257 2-199 (199)
7 PRK10019 nickel/cobalt efflux 99.1 1.2E-07 2.6E-12 86.0 26.0 221 33-264 3-275 (279)
8 PF11139 DUF2910: Protein of u 98.7 3.3E-06 7.1E-11 73.9 20.0 192 56-262 4-212 (214)
9 COG2215 ABC-type uncharacteriz 98.5 0.00035 7.7E-09 63.6 27.4 206 47-261 55-299 (303)
10 PF01810 LysE: LysE type trans 98.2 0.00025 5.5E-09 60.3 18.2 164 89-261 22-190 (191)
11 PRK10520 rhtB homoserine/homos 98.1 0.0019 4.2E-08 55.8 22.7 190 53-262 9-204 (205)
12 COG1280 RhtB Putative threonin 98.0 0.0081 1.8E-07 52.4 23.5 196 48-262 4-207 (208)
13 PRK10958 leucine export protei 97.9 0.015 3.1E-07 50.8 23.0 182 60-260 20-209 (212)
14 PRK09304 arginine exporter pro 97.7 0.021 4.6E-07 49.5 22.0 195 50-264 5-204 (207)
15 PRK10229 threonine efflux syst 97.7 0.029 6.4E-07 48.4 23.4 191 53-262 8-206 (206)
16 TIGR00949 2A76 The Resistance 97.6 0.024 5.2E-07 47.9 20.4 163 89-257 17-184 (185)
17 PF01914 MarC: MarC family int 97.5 0.017 3.6E-07 50.4 17.9 189 56-263 9-199 (203)
18 TIGR00427 membrane protein, Ma 97.5 0.044 9.6E-07 47.7 20.0 81 55-141 11-91 (201)
19 PF02683 DsbD: Cytochrome C bi 97.4 0.0023 4.9E-08 55.7 11.7 88 51-141 118-210 (211)
20 PRK10995 inner membrane protei 97.4 0.012 2.7E-07 51.8 16.1 83 53-141 10-92 (221)
21 COG0785 CcdA Cytochrome c biog 97.4 0.0017 3.6E-08 57.4 10.2 90 48-140 124-219 (220)
22 PRK11111 hypothetical protein; 97.2 0.042 9.2E-07 48.3 17.6 81 55-141 14-94 (214)
23 PRK10323 cysteine/O-acetylseri 97.2 0.12 2.6E-06 44.4 23.3 151 92-259 38-194 (195)
24 PF09930 DUF2162: Predicted tr 97.0 0.032 7E-07 49.3 13.9 24 244-267 160-184 (224)
25 PRK00293 dipZ thiol:disulfide 96.7 0.02 4.4E-07 57.3 11.9 91 167-259 169-262 (571)
26 PF09948 DUF2182: Predicted me 96.7 0.068 1.5E-06 46.2 13.4 148 90-258 36-190 (191)
27 PRK10739 putative antibiotic t 96.7 0.24 5.2E-06 43.0 16.9 79 57-141 10-88 (197)
28 COG2095 MarC Multiple antibiot 96.4 0.26 5.7E-06 43.0 15.7 79 57-141 13-91 (203)
29 TIGR00948 2a75 L-lysine export 96.4 0.5 1.1E-05 39.7 16.9 151 93-250 22-176 (177)
30 PF03824 NicO: High-affinity n 96.2 0.96 2.1E-05 41.0 23.7 65 48-120 3-67 (282)
31 PF13386 DsbD_2: Cytochrome C 95.9 0.065 1.4E-06 46.1 9.5 82 49-138 117-198 (199)
32 PRK10019 nickel/cobalt efflux 94.4 0.55 1.2E-05 42.9 10.9 84 53-141 180-270 (279)
33 COG4232 Thiol:disulfide interc 89.5 2.6 5.6E-05 42.2 9.6 90 166-259 169-263 (569)
34 COG5486 Predicted metal-bindin 89.3 10 0.00023 34.0 12.2 169 63-259 98-279 (283)
35 COG2215 ABC-type uncharacteriz 87.9 8.8 0.00019 35.4 11.3 88 49-141 200-297 (303)
36 TIGR00704 NaPi_cotrn_rel Na/Pi 86.1 16 0.00036 33.8 12.3 131 125-259 5-146 (307)
37 PF03596 Cad: Cadmium resistan 86.0 22 0.00047 30.8 12.2 74 181-261 108-181 (191)
38 TIGR00802 nico high-affinity n 83.5 16 0.00034 33.4 10.5 162 52-218 3-194 (280)
39 PRK11469 hypothetical protein; 83.2 28 0.00062 29.8 20.8 25 238-262 161-185 (188)
40 TIGR03717 R_switched_YjbE inte 80.6 34 0.00075 29.0 19.0 142 83-260 29-174 (176)
41 COG2836 Uncharacterized conser 76.7 31 0.00068 30.6 9.9 84 50-141 132-215 (232)
42 COG0730 Predicted permeases [G 75.5 57 0.0012 28.8 17.9 27 238-264 230-256 (258)
43 PF03824 NicO: High-affinity n 71.9 66 0.0014 29.0 11.3 67 47-118 176-243 (282)
44 COG1971 Predicted membrane pro 69.3 75 0.0016 27.5 18.3 126 114-261 57-186 (190)
45 PF04474 DUF554: Protein of un 68.5 83 0.0018 27.9 10.7 87 169-259 96-202 (226)
46 PRK10621 hypothetical protein; 64.2 1.1E+02 0.0023 27.4 17.3 27 238-264 230-256 (266)
47 PRK01061 Na(+)-translocating N 58.3 1.4E+02 0.0031 26.8 12.7 53 172-226 121-173 (244)
48 PF05977 MFS_3: Transmembrane 54.3 2.3E+02 0.005 28.1 16.3 28 91-118 143-170 (524)
49 COG1283 NptA Na+/phosphate sym 53.3 1.6E+02 0.0034 29.6 10.7 132 124-259 7-150 (533)
50 COG1283 NptA Na+/phosphate sym 52.3 2.6E+02 0.0056 28.1 14.1 129 123-257 132-261 (533)
51 PF04156 IncA: IncA protein; 47.5 1.3E+02 0.0029 25.1 8.3 19 89-107 5-23 (191)
52 COG4657 RnfA Predicted NADH:ub 47.0 94 0.002 26.4 6.9 54 171-226 101-154 (193)
53 PF03741 TerC: Integral membra 44.9 2E+02 0.0042 24.5 17.4 48 208-260 135-182 (183)
54 PRK12456 Na(+)-translocating N 41.5 61 0.0013 28.2 5.2 79 172-257 109-187 (199)
55 COG1279 Lysine efflux permease 36.6 2.9E+02 0.0063 24.1 17.6 51 211-261 147-201 (202)
56 PRK13755 putative mercury tran 36.2 2.1E+02 0.0046 23.1 7.0 45 216-264 52-100 (139)
57 PF06609 TRI12: Fungal trichot 35.8 4.9E+02 0.011 26.5 16.8 94 15-116 12-107 (599)
58 PF08611 DUF1774: Fungal prote 35.6 2E+02 0.0044 22.1 6.6 44 96-139 25-68 (97)
59 PRK13747 putative mercury resi 34.7 1.2E+02 0.0026 22.2 4.9 30 165-195 12-41 (78)
60 PF01810 LysE: LysE type trans 34.1 2.7E+02 0.0058 23.0 8.1 87 53-141 100-188 (191)
61 PRK05151 electron transport co 33.1 3.2E+02 0.007 23.6 11.7 53 172-226 102-154 (193)
62 COG1811 Uncharacterized membra 32.3 3.6E+02 0.0078 23.9 9.1 58 205-262 139-202 (228)
63 PF05052 MerE: MerE protein; 32.0 1.2E+02 0.0026 22.1 4.6 27 167-194 14-40 (75)
64 PRK02830 Na(+)-translocating N 31.2 3.6E+02 0.0077 23.5 12.0 53 172-226 112-164 (202)
65 TIGR01940 nqrE NADH:ubiquinone 30.9 3.6E+02 0.0078 23.5 12.4 53 172-226 111-163 (200)
66 PF02690 Na_Pi_cotrans: Na+/Pi 30.6 2.9E+02 0.0063 22.3 11.2 60 164-224 29-89 (142)
67 TIGR02840 spore_YtaF putative 30.0 3.6E+02 0.0079 23.2 18.6 36 103-141 42-79 (206)
68 COG1279 Lysine efflux permease 28.7 3.8E+02 0.0083 23.4 8.0 76 59-141 118-199 (202)
69 TIGR01943 rnfA electron transp 26.8 4.1E+02 0.009 22.9 11.3 53 172-226 101-153 (190)
70 COG3376 HoxN High-affinity nic 26.4 1.8E+02 0.0038 27.2 5.8 53 89-141 86-146 (342)
71 COG2119 Predicted membrane pro 26.0 4.3E+02 0.0094 22.8 15.4 146 99-263 39-186 (190)
72 PF08507 COPI_assoc: COPI asso 24.8 3.5E+02 0.0076 21.5 6.8 40 94-141 64-103 (136)
73 PF14007 YtpI: YtpI-like prote 24.3 2.3E+02 0.0049 21.4 5.2 25 116-141 50-74 (89)
74 PF09838 DUF2065: Uncharacteri 23.7 2.5E+02 0.0054 19.2 6.1 33 227-259 20-53 (57)
75 COG3771 Predicted membrane pro 23.1 3.4E+02 0.0073 20.6 6.0 32 199-230 36-67 (97)
76 PF01925 TauE: Sulfite exporte 22.9 4.8E+02 0.01 22.2 13.0 19 239-257 221-239 (240)
77 PRK13727 conjugal transfer pil 21.7 3.3E+02 0.0071 19.9 5.3 24 241-264 40-63 (80)
78 TIGR02741 TraQ type-F conjugat 20.7 3.5E+02 0.0075 19.8 5.2 24 241-264 40-63 (80)
No 1
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=100.00 E-value=3.3e-34 Score=250.20 Aligned_cols=206 Identities=41% Similarity=0.635 Sum_probs=174.1
Q ss_pred HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhH---HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHH
Q 024263 53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQ---IIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA 129 (270)
Q Consensus 53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~---~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~ 129 (270)
+|.+|+++++|||++|++|++++++.+++++++|++ .+..++.|.+|+.++|..+|...+.+|+.+++..+++..+.
T Consensus 1 af~aGll~~~sPC~lp~lp~~l~~~~~~~~~~~~~~~~~~~~~~l~f~~G~~~~~~~lG~~~~~~g~~~~~~~~~~~~i~ 80 (211)
T PF02683_consen 1 AFLAGLLSSFSPCVLPVLPLYLSYIAGSGASSRRKGKRVALLLGLAFVLGFALVFALLGLGAGALGSFFGQISPWLYIIA 80 (211)
T ss_pred ChHHHHHHhcCcHHHHHHHHHHHHHhCCCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999876543222222 47889999999999999999999999999987778899999
Q ss_pred HHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHH
Q 024263 130 SGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL 209 (270)
Q Consensus 130 G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l 209 (270)
|++++++|+.+++.++.+.+...+.. .+.+++++++..++|.+|+.++++|+||++|++.+++.++++++|+..+..++
T Consensus 81 g~~~i~~Gl~~l~~~~~~~l~~~~~~-~~~~~~~~~~~~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~~~~~~~~~ll 159 (211)
T PF02683_consen 81 GVLLILFGLSLLGLFEIPFLSRPRLG-LRSKRKSGGGLLGAFLLGLLFGLVWSPCTGPILAAILALAASSGSVLQGLLLL 159 (211)
T ss_pred HHHHHHHHHHHHHhhcchhhhhhhhh-hhhhcCCCCCcccHHHHHHHHHHHhhhcchHHHHHHHHHHHcCCchHHHHHHH
Confidence 99999999999988764332221111 11112334557899999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024263 210 LSYTTGYVAPLLLAASFAGALQ-SLLSFRKFSSWINPMSGALLLGGGLYTF 259 (270)
Q Consensus 210 ~~fglG~~lPlll~~~~~~~~~-~~~~~~~~~~~i~~i~G~lli~~Gi~~~ 259 (270)
++|++|+++|+++++...++.+ +.++.+|+++++|++.|+++++.|+|++
T Consensus 160 ~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i~~~~G~lli~~g~~~l 210 (211)
T PF02683_consen 160 LAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWIKRISGILLIALGLYLL 210 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998888764 5667889999999999999999999976
No 2
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-32 Score=236.19 Aligned_cols=207 Identities=34% Similarity=0.513 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHH
Q 024263 48 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPL 127 (270)
Q Consensus 48 ~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~ 127 (270)
.++..+|.+|+++++|||++|++|.++++....+ .++|++.+.+.+.|.+|..++|..+|..+..+|+.+...++++++
T Consensus 11 ~~~~~aflaGlls~lSPCilpllP~~l~~~~~~~-~~~r~~~~~~~l~FvlG~~~vf~~lG~~~~~~~~~~~~~~~~l~~ 89 (220)
T COG0785 11 VSILLAFLAGLLSFLSPCVLPLLPAYLSYLAGGS-LGARKSVLLASLLFVLGFATVFVLLGIGASGLGAFLPLNRLYLRY 89 (220)
T ss_pred hHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999999999987542 233778889999999999999999999999999999887778999
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHH
Q 024263 128 AASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGT 207 (270)
Q Consensus 128 ~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~ 207 (270)
+.|++++++|+.+++..+.+.+....|.+.+ .+..+..++|.+|+.++++|+||.+|++.+++.+++.+++...|..
T Consensus 90 i~gi~li~~Gl~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~~~~~~~g~~ 166 (220)
T COG0785 90 IAGILLILLGLLFLGVLRLPLLLRFARFQLK---GKSVTALGAFLLGLLFALGWTPCIGPILGSILALAASTGSVVLGAL 166 (220)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhhcchhhhc---cCCCcchhHHHHHHHHHHHhccchhHHHHHHHHHHhcCCcHHHHHH
Confidence 9999999999998888776555443333211 2356789999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHH--HHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 024263 208 LLLSYTTGYVAPLLLAASFAGALQ--SLLSFRKFSSWINPMSGALLLGGGLYT 258 (270)
Q Consensus 208 ~l~~fglG~~lPlll~~~~~~~~~--~~~~~~~~~~~i~~i~G~lli~~Gi~~ 258 (270)
+|++|++|.++|+++++.+.++.. +.++++|+.++++++.|++++.+|+++
T Consensus 167 ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~~~~i~~~~G~lli~~Gv~l 219 (220)
T COG0785 167 LLAAYALGLALPFLLLALLSGRALKAFSRKLRRHSGAIEIVGGALLILLGLLL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998874 477889999999999999999999985
No 3
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=100.00 E-value=2.1e-32 Score=270.14 Aligned_cols=220 Identities=26% Similarity=0.359 Sum_probs=180.4
Q ss_pred chHHHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--h
Q 024263 45 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI--G 122 (270)
Q Consensus 45 ~~~~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~--~ 122 (270)
+.+..++.+|++|++++++||++||+|++.+++.+++++++|++.+.+++.|++|++++|+++|++++.+|..++.. +
T Consensus 164 ~~~~~l~~afl~Glll~l~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~ 243 (571)
T PRK00293 164 SLPWSLLWFFLIGIGLAFTPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQH 243 (571)
T ss_pred cchHHHHHHHHHHHHHhccchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44678999999999999999999999999988876433245667888999999999999999999999999877532 3
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhcccccc-cCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccC
Q 024263 123 TGLPLAASGLAIVMGLNLLEIIELQLPSFFD-NFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKD 201 (270)
Q Consensus 123 ~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~-~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs 201 (270)
.++.+..+++++++|+.|+|.+++++|.... +.++..++.+.++..++|++|++++++++||++|++++++.+++.++|
T Consensus 244 ~~~~~~~~~l~v~lgL~~~G~~~l~lp~~~~~~~~~~~~~~~~~~~~gaf~~G~l~~l~~~PC~~p~L~~~L~~aa~tg~ 323 (571)
T PRK00293 244 PYVLIGLSILFVLLALSMFGLFTLQLPSSLQTRLTLLSNRQQGGSLGGVFVMGAISGLICSPCTTAPLSGALLYIAQSGD 323 (571)
T ss_pred HHHHHHHHHHHHHHHHHHhcceeccCcHHHHHHhhhhhhcccCCchHhHHHHHHHHHHHhCCCchHHHHHHHHHHHccCc
Confidence 4677788899999999999998877665432 222222223446789999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCcc
Q 024263 202 PLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLFPTT 267 (270)
Q Consensus 202 ~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~~~~~~ 267 (270)
+..|.+.|++||+|+++|+++++.+.++. ..+..++.++++++.|++++++|+|++ .+++|.+
T Consensus 324 ~~~g~~~l~~~gLG~~~Plll~~~~~~~~--lpk~g~wm~~~k~~~G~~ll~~~~~ll-~~~~~~~ 386 (571)
T PRK00293 324 LLLGGLTLYLLALGMGLPLILITTFGNKL--LPKSGPWMNQVKTAFGFVLLALPVFLL-ERVLPGV 386 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh--cccCccHHHHHHHHHHHHHHHHHHHHH-HHHhhHH
Confidence 99999999999999999999999886554 123345556788899999999999955 5777764
No 4
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.95 E-value=5e-27 Score=226.48 Aligned_cols=216 Identities=32% Similarity=0.499 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-Hhhc-h
Q 024263 47 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYG-QIGT-G 124 (270)
Q Consensus 47 ~~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~-~~~~-~ 124 (270)
..+++.+|+.|++-.|+||++||+|+..+.+.+..++.+++|.......|..|+.++|+++|..++..|..++ +.|+ +
T Consensus 167 ~~~ll~afl~GLlL~ftPCVLPmlpl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q~qLQ~P~ 246 (569)
T COG4232 167 KWSLLLAFLGGLLLNFTPCVLPMLPLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQAQLQQPW 246 (569)
T ss_pred CHHHHHHHHHHHHHhhccHhhhhHHHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhHhHcccH
Confidence 3558999999999999999999999999888765334455566767778888899999999999999887765 3343 4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccc-CchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH
Q 024263 125 LPLAASGLAIVMGLNLLEIIELQLPSFFDN-FDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL 203 (270)
Q Consensus 125 ~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~-~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~ 203 (270)
+-....++++++++.|+|.+++++|...+. +...+++.+.++..|+|.+|++.+++.+||++|.+.+++.++++++|..
T Consensus 247 vl~~la~lf~llALSMfGlFelqlP~s~q~~l~~~S~~~~gG~~~GaF~mG~La~Lv~sPCt~ppLa~aL~Yiaqsg~~~ 326 (569)
T COG4232 247 VLGGLAALFVLLALSMFGLFELQLPSSLQTRLTQQSNRASGGSIVGAFFMGALAGLVVSPCTAPPLAGALLYIAQSGNAL 326 (569)
T ss_pred HHHHHHHHHHHHHHHhhhheeecCcHHHhhHHhhhhcccCCCchHHHHHHHHHHHHhcCcCcchhHHHHHHHHHhcchHH
Confidence 555677789999999999999999886432 3333333444558999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHH---HHHHHHHHHHHHHHHHhhhcCccc
Q 024263 204 IGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWIN---PMSGALLLGGGLYTFLDRLFPTTM 268 (270)
Q Consensus 204 ~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~---~i~G~lli~~Gi~~~~~~~~~~~~ 268 (270)
.|...+.++++|+++|+++++++.+++ ++|.++|++ .+.|++|++..+|+ +.|++|...
T Consensus 327 ~g~~~l~al~LGMg~Plllv~~f~~~~-----LPk~G~WM~~vK~~fGFvlLa~aiwL-l~~~~~e~~ 388 (569)
T COG4232 327 LGGLALYALGLGMGLPLLLIGVFGNRL-----LPKPGPWMNTVKQAFGFVLLATAIWL-LWRVLPEVG 388 (569)
T ss_pred HHHHHHHHHHHhcccchhhheeccccc-----CCCCCcHHHHHHHHHHHHHHHHHHHH-HHHHhhhhH
Confidence 999999999999999999999887443 566666655 66999999999994 477777653
No 5
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=99.93 E-value=9.1e-24 Score=182.54 Aligned_cols=201 Identities=24% Similarity=0.330 Sum_probs=154.3
Q ss_pred HHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---hhchHH
Q 024263 50 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ---IGTGLP 126 (270)
Q Consensus 50 ~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~---~~~~~~ 126 (270)
++..+++|++++ .||..+|-|+..++...+.++++++ .++.++.|++||++||+++|++.+.+|..+.+ .+....
T Consensus 6 ~l~~~~~g~lg~-gHC~gMCGGi~~afs~~~~~~~~~~-~~~~~~lyNlGRi~SYallG~i~G~lG~~l~~~~~~~~~l~ 83 (232)
T COG2836 6 FLGIFLLGLLGG-GHCLGMCGGIVLAFSLLIPSKVSSS-RLKLHLLYNLGRILSYALLGAILGALGVSLGQSAGLRGVLF 83 (232)
T ss_pred HHHHHHHHHhcC-ccHHHhcchHHHHHHHhccccchHH-HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444889999888 5999999999998876543223322 38889999999999999999999999977654 355789
Q ss_pred HHHHHHHHHHHHHHHH---Hhh--hhcccccccCchhh---hhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhh
Q 024263 127 LAASGLAIVMGLNLLE---IIE--LQLPSFFDNFDPRA---AAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT 198 (270)
Q Consensus 127 ~~~G~lli~~Gl~~lg---~~~--~~~p~~~~~~~~~~---~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~ 198 (270)
+++|++++++|+.++. ..+ .+.|...+++.+.. +..+.++.++++++|+.+|+ .||. ++++.+++|..
T Consensus 84 i~ag~~li~lGL~l~~~~~~~~~~~~~p~i~~~~~~~l~~~r~l~~~~~~~~~~lG~~wG~--lPCG--lVYs~l~~A~~ 159 (232)
T COG2836 84 IIAGALLIALGLYLLARGGMWSGALKLPFIGGFLWRLLKPIRLLPLKPLPGALFLGMLWGL--LPCG--LVYSALAYALS 159 (232)
T ss_pred HHHHHHHHHHHHHHhcccchhhHHhhchhcchHHHHhhhhhhccccCcchHHHHHHHHhcc--cchH--HHHHHHHHHHH
Confidence 9999999999999952 222 12333221111111 11344568899999999995 9995 78899999999
Q ss_pred ccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 024263 199 SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLD 261 (270)
Q Consensus 199 ~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~ 261 (270)
++|+.+|+++|++||+||..+++..+.+.++++ +..+++.+|..|.++.+.|+|.++.
T Consensus 160 tgS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s-----~~~r~~~~rl~~gl~~v~g~~~l~~ 217 (232)
T COG2836 160 TGSAFEGALVMLAFGLGTLPNLLAMGIFSSKLS-----KSSRKRLNRLSGGLMVVVGLIGLWK 217 (232)
T ss_pred cCCHHHHHHHHHHHhhcccHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999888888998888875 3345678888888888888776653
No 6
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=99.92 E-value=3.9e-24 Score=185.11 Aligned_cols=189 Identities=28% Similarity=0.404 Sum_probs=138.0
Q ss_pred HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh------chHH
Q 024263 53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIG------TGLP 126 (270)
Q Consensus 53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~------~~~~ 126 (270)
+|+.|+++++ ||..+|.|+..++..+ ++ | |.+ ..+.|++||+++|+++|++++.+|+.++... ....
T Consensus 2 a~~~Gl~gs~-hC~~mCg~~~~~~~~~---~~-~-~~~-~~l~y~~GRi~sY~llG~l~g~~G~~l~~~~~~~~l~~~~~ 74 (199)
T PF13386_consen 2 AFLLGLLGSL-HCIGMCGPIALALSLS---QP-K-RWL-RHLLYNLGRILSYTLLGALAGLLGSGLSLSGWLPGLRRIIG 74 (199)
T ss_pred HHHHHHHHhh-hHHHhHHHHHHHHhcc---Cc-c-cHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 6899999999 9999999999988543 12 2 234 5899999999999999999999999886432 2334
Q ss_pred HHHHHHHHHHHHHHHHHhhh-hcccccccCchhhhh-cCC-CChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH
Q 024263 127 LAASGLAIVMGLNLLEIIEL-QLPSFFDNFDPRAAA-ANF-PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL 203 (270)
Q Consensus 127 ~~~G~lli~~Gl~~lg~~~~-~~p~~~~~~~~~~~~-~~~-~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~ 203 (270)
++.+.+++++|+.++...+. +.+...+...++.++ .++ ++..++|.+|+++|+ .|| |+++.++..++.++|+.
T Consensus 75 ~~~~~~~l~~gl~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~l~gl--lPC--g~~y~~l~~A~~s~s~~ 150 (199)
T PF13386_consen 75 ILLGLLGLFLGLRLLGGPRLPKLGRLGHGLARRLQPLLRKLKGPWGAFLLGFLNGL--LPC--GPVYFALALAAASGSPL 150 (199)
T ss_pred HHHHHHHHHHHHHHHhccchhhHHhccHHHHHHhHHHHHhcCCccHHHHHHHHHHH--hHH--HHHHHHHHHHHHcCChH
Confidence 55555566666666632111 111111111111111 122 678899999999998 899 45667788888999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 024263 204 IGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLY 257 (270)
Q Consensus 204 ~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~ 257 (270)
+|+++|++|++||..|++.++...++.+ ++.+++..|+.|+++++.|+|
T Consensus 151 ~G~l~m~~FgLGT~p~ll~~~~~~~~l~-----~~~~~~~~r~~g~~~i~~G~~ 199 (199)
T PF13386_consen 151 YGALLMLAFGLGTLPALLLAGLLAGKLS-----RRLRRRLLRLAGVLLIILGIY 199 (199)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999888888887777664 234466777999999999987
No 7
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=99.11 E-value=1.2e-07 Score=86.04 Aligned_cols=221 Identities=17% Similarity=0.196 Sum_probs=140.8
Q ss_pred hHHHHHHhhhccchHHHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024263 33 QANEAVLGQLSALSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS 112 (270)
Q Consensus 33 ~~~~~~~~~l~~~~~~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~ 112 (270)
+..|+.+|+ +-+.-+..+|+.|+.=++.|=-.-. +..+|+.++ +++.++.+..++.-.++=..+-.+++.+.-
T Consensus 3 ~~~~~~~~~---~~~~l~~~~f~yG~~HAlgPGHGKa--vi~sYlv~~--~~~~~~a~~lgl~~~l~hta~~lv~~~~~~ 75 (279)
T PRK10019 3 EFTTLLQQG---NAWFFIPSAILLGALHGLEPGHSKT--MMAAFIIAI--KGTIKQAVMLGLAATISHTAVVWLIAFGGM 75 (279)
T ss_pred cHHHHHHcc---hHHHHHHHHHHHHHHHhcCCCcchH--HHhhhhhcC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344565555 5577788899999999998876532 234666542 345556677777767776655555555443
Q ss_pred HHhHHHHH--hhchHHHHHHHHHHHHHHHHHHH-hhhh--c---cc--cccc--------------------------C-
Q 024263 113 FAGKAYGQ--IGTGLPLAASGLAIVMGLNLLEI-IELQ--L---PS--FFDN--------------------------F- 155 (270)
Q Consensus 113 ~~G~~~~~--~~~~~~~~~G~lli~~Gl~~lg~-~~~~--~---p~--~~~~--------------------------~- 155 (270)
.+.+.+.. ..+++..+.+++++.+|+.++-. .+.+ . +. ..+. .
T Consensus 76 ~l~~~~~~~~~~~~le~~S~~lii~lGl~ll~r~~r~~~~~~~~~h~~~h~h~h~h~h~~~c~~~~~~~~~~~~gh~h~~ 155 (279)
T PRK10019 76 YLSRRFTAQSAEPWLQLISAVIIISTAFWMFWRTWRGERNWLENMHHHDHDHDHDHDHEHHHDHGHHHHHEHGATAEEYQ 155 (279)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCCccCCCCCCCcCccccccccccccccccCCC
Confidence 44555442 45678999999999999999832 1111 0 00 0000 0
Q ss_pred chh--------hhh--cCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHH
Q 024263 156 DPR--------AAA--ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAAS 225 (270)
Q Consensus 156 ~~~--------~~~--~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~ 225 (270)
++. +.+ .+..+..+.+.+|+.-|+ .||++.++. +..+.+.+.+..|+++.++|++|+++.+..++.
T Consensus 156 ~~~~~~~a~~~r~~~~~~~~~~~~~l~igl~~Gl--~PCpgAl~V--LL~a~~lg~~~~Gi~~vlafslGtaltm~~vgl 231 (279)
T PRK10019 156 DAHERAHANDIKRRFDGREVTNGQILLFGLTGGL--IPCPAAITV--LLICIQLKALTLGATLVLSFSIGLALTLVTVGV 231 (279)
T ss_pred CHHHhhccchhhhhhcccccccchhhHHHHHhcc--CCCHHHHHH--HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000 000122233577888886 999876643 444556789999999999999999999998887
Q ss_pred HHH-HHHH-HHhhhhhhHHHH---HHHHHHHHHHHHHHHHhhhc
Q 024263 226 FAG-ALQS-LLSFRKFSSWIN---PMSGALLLGGGLYTFLDRLF 264 (270)
Q Consensus 226 ~~~-~~~~-~~~~~~~~~~i~---~i~G~lli~~Gi~~~~~~~~ 264 (270)
... ..++ .++..+..++++ .++|++.+++|+|+.++.|.
T Consensus 232 l~~~~~r~~~~~~~~~~~~~~~~p~~s~~l~i~~G~~~~~~~~~ 275 (279)
T PRK10019 232 GAAISVQQAAKRWSGFNTLARRAPYFSSLLIGLVGVYMGVHGFM 275 (279)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 763 3332 223333445555 88999999999999987764
No 8
>PF11139 DUF2910: Protein of unknown function (DUF2910); InterPro: IPR021315 Some members in this bacterial family annotate the proteins as cytochrome C biogenesis proteins however this cannot be confirmed. Currently no function for this family is known.
Probab=98.72 E-value=3.3e-06 Score=73.90 Aligned_cols=192 Identities=20% Similarity=0.193 Sum_probs=120.0
Q ss_pred HHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-H-------hhchHHH
Q 024263 56 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYG-Q-------IGTGLPL 127 (270)
Q Consensus 56 ~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~-~-------~~~~~~~ 127 (270)
.++..++||=.+...-. .+.+ ++. .++...|.+|...+|...|.+.-....... . ...++.+
T Consensus 4 LAl~~a~sP~~i~~~vl---ll~~---~r~----~~~~~af~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 73 (214)
T PF11139_consen 4 LALVDALSPLPIVIAVL---LLSR---PRP----RRNLLAFLAGWFLGYLAVGLVLLFGLDALPSGSSSAPSPVVGWLQL 73 (214)
T ss_pred HHHHHHhChHHHHHHHH---HhcC---CCc----cchhHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCccHHHHHHH
Confidence 46667777765443321 1211 222 245789999999999999998877666553 1 1234577
Q ss_pred HHHHHHHHHHHHHHHHhh-hhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHH
Q 024263 128 AASGLAIVMGLNLLEIIE-LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGG 206 (270)
Q Consensus 128 ~~G~lli~~Gl~~lg~~~-~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~ 206 (270)
+.|++++++|.......+ .+-|+. ..+...+.+..+..+++.+|+..++...+...|++.+.......+-++..-.
T Consensus 74 ~lGv~ll~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~laa~~~I~~~~~~~~~~~ 150 (214)
T PF11139_consen 74 VLGVLLLLLAVRVWRRRPRPDPPSR---PPRWLARLDSASPGGAFWLGFVLGLANPKTMLPYLAAIAIIAASGLSPGTQV 150 (214)
T ss_pred HHHHHHHHHHHHHhhcccccCCCCC---chhhhhhhhcCCchhHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHH
Confidence 788888888887663220 001111 1111112234556788999999999888887666666555556666888888
Q ss_pred HHHHHHHhhhHHHHHHHHH----HHHHHHHHHhhhhhhHH----HHHHHHHHHHHHHHHHHHhh
Q 024263 207 TLLLSYTTGYVAPLLLAAS----FAGALQSLLSFRKFSSW----INPMSGALLLGGGLYTFLDR 262 (270)
Q Consensus 207 ~~l~~fglG~~lPlll~~~----~~~~~~~~~~~~~~~~~----i~~i~G~lli~~Gi~~~~~~ 262 (270)
.....|.+-+..|..+... ..++.+. ...|.++| -+.+.++++.+.|++++.+.
T Consensus 151 ~~l~~y~~i~~~~~~~pll~~~~~~~r~~~--~l~r~~~wl~~~~~~i~~~i~~i~G~~l~~~G 212 (214)
T PF11139_consen 151 VALVVYCLIASLPALLPLLAYLVAPERAEP--WLERLRSWLRRHSRQILAVILLIVGALLLGDG 212 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH--HHHHHHHHHHHccHHHHHHHHHHHHHHHHHhh
Confidence 9999999999877765332 2223321 22333333 44678999999999987653
No 9
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=98.51 E-value=0.00035 Score=63.63 Aligned_cols=206 Identities=23% Similarity=0.235 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHH-hHH--HHHh
Q 024263 47 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIA--FSLGLATTLALLGVGASFA-GKA--YGQI 121 (270)
Q Consensus 47 ~~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~--f~lG~~~sy~~lG~l~~~~-G~~--~~~~ 121 (270)
|..+.++|+-|++=++.|=-.=.+ ..+|+.+. +.+-|+.+..++. ..=|.. .+.+++++.+.. +.. +.+.
T Consensus 55 w~li~~SflyGvlHAlgPGHgKav--iasylia~--~~~lk~~ilLsf~~sllqG~~-Av~l~~~~~~v~~~~s~~~~~s 129 (303)
T COG2215 55 WTLIPLSFLYGVLHALGPGHGKAV--IATYLIAH--KATLKRAILLSFLASLLQGLT-AVVLLLAFLGVLRLSSITFALS 129 (303)
T ss_pred HHHHHHHHHHHHHhccCCCcchHH--HHHHHHhc--ccchhHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhhhHHhhh
Confidence 578889999999999999875322 23566542 2333333333322 222222 233333333322 232 3345
Q ss_pred hchHHHHHHHHHHHHHHHHHHH--hhh--hcccc--cc-------------------cCchh-hhhcCCCChhHHHHHHH
Q 024263 122 GTGLPLAASGLAIVMGLNLLEI--IEL--QLPSF--FD-------------------NFDPR-AAAANFPSSVQAYLAGL 175 (270)
Q Consensus 122 ~~~~~~~~G~lli~~Gl~~lg~--~~~--~~p~~--~~-------------------~~~~~-~~~~~~~~~~~~fllG~ 175 (270)
..++.+....+++.+|+.++-. .+. +-|+. .. ...+. ++..+.......+..|+
T Consensus 130 ~~~lE~~S~~Ll~~~G~w~~~r~lr~l~~~~~~~~~~~~~~~~~~~h~H~~~~~Cgh~H~~d~~~~~~~~~~~~~~~~~l 209 (303)
T COG2215 130 EPWLELISFLLLILLGLWLLWRTLRRLRHRHPKHPHFAAHPHPDHDHDHHYQCACGHAHAPDPKRLGQAVDWKQQWLFGL 209 (303)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCccccccCCCcccCCccccccccccccCCChHHhcccccHHHHHHHHH
Confidence 5678999999999999998821 111 11220 00 00011 11112233456688888
Q ss_pred HHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHH----HHHhh----hhhhHHHHHHH
Q 024263 176 TFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ----SLLSF----RKFSSWINPMS 247 (270)
Q Consensus 176 ~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~----~~~~~----~~~~~~i~~i~ 247 (270)
..|+ .||++.+.. +..+-+.+-+..|++..+++++|+++++-..+...-..| ++... +|..+.++.+.
T Consensus 210 ~~GL--rPCpgAi~V--Llfal~~gl~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~~~~~~~~~l~~ 285 (303)
T COG2215 210 TGGL--RPCPGAIFV--LLFALSLGLYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLAKRISYIVSLLG 285 (303)
T ss_pred HhcC--ccCcHHHHH--HHHHHHhchHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 8887 999876643 444666788999999999999999999777666544333 22111 12233455667
Q ss_pred HHHHHHHHHHHHHh
Q 024263 248 GALLLGGGLYTFLD 261 (270)
Q Consensus 248 G~lli~~Gi~~~~~ 261 (270)
|.+++.+|+..++.
T Consensus 286 gli~l~~g~~~l~~ 299 (303)
T COG2215 286 GLIGLYFGLHLLLG 299 (303)
T ss_pred HHHHHHHHHHHHHH
Confidence 77777787766544
No 10
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=98.20 E-value=0.00025 Score=60.33 Aligned_cols=164 Identities=21% Similarity=0.220 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-H---HhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCC
Q 024263 89 IIGDSIAFSLGLATTLALLGVGASFAGKAY-G---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF 164 (270)
Q Consensus 89 ~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~-~---~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~ 164 (270)
..+.++...+|..+...+...+.......+ + ...+.+.++.+..++.+|..++..-+ +... +.....++
T Consensus 22 G~~~~~~~~~G~~~~~~i~~~~~~~g~~~l~~~~~~~~~~l~~~G~~~L~~lg~~~~~~~~----~~~~---~~~~~~~~ 94 (191)
T PF01810_consen 22 GFKAGLPVALGAALGDLIYILLAVFGLSALLKSSPWLFMILKLLGALYLLYLGYKLLRSKF----SSKS---STQSEAKK 94 (191)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhccc----Ccch---hhhhhhcc
Confidence 345677888888888888776665444433 2 23455677888888999988872211 0000 00000112
Q ss_pred CChhHHHHHHHHHhhccCCCchHHHHHHHHHHhh-ccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 024263 165 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI 243 (270)
Q Consensus 165 ~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~-~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i 243 (270)
.+....|.-|+...+ .-|=+-+...++...... ..+............++....+...+...++.++..+.++.+ ++
T Consensus 95 ~~~~~~f~~g~~~~~-~NPk~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~-~i 172 (191)
T PF01810_consen 95 QSKSKSFLTGFLLNL-LNPKAILFWLAVFPQFISPEYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIR-WI 172 (191)
T ss_pred ccHHHHHHHHHHHHH-HhHHHHHHHHHhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence 455667788877776 355543444444443333 222333334444555565566666666666665433333344 99
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 024263 244 NPMSGALLLGGGLYTFLD 261 (270)
Q Consensus 244 ~~i~G~lli~~Gi~~~~~ 261 (270)
+++.|++++..|++++++
T Consensus 173 ~~~~g~~li~~av~l~~~ 190 (191)
T PF01810_consen 173 NRISGLLLIGFAVYLLYS 190 (191)
T ss_pred HHHHHHHHHHHHHHHHHc
Confidence 999999999999998764
No 11
>PRK10520 rhtB homoserine/homoserine lactone efflux protein; Provisional
Probab=98.14 E-value=0.0019 Score=55.82 Aligned_cols=190 Identities=18% Similarity=0.099 Sum_probs=96.2
Q ss_pred HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHH---HhhchHHHH
Q 024263 53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPLA 128 (270)
Q Consensus 53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G-~~~~---~~~~~~~~~ 128 (270)
.+...+...++| .|-.-..++.-. ++..++++...+|..+.+.+...+....- ..+. .....++++
T Consensus 9 ~~~~~~~~~~sP--GP~~~~v~~~~~--------~~G~r~~~~~~~G~~~g~~v~~~~~~~Gl~~l~~~~p~~~~~lk~~ 78 (205)
T PRK10520 9 YLLTSIILSLSP--GSGAINTMSTSI--------SHGYRGAVASIAGLQTGLAIHIVLVGVGLGALFSQSLLAFEVLKWA 78 (205)
T ss_pred HHHHHHHHhcCC--chhHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 344455566666 343333333221 12345577888888887777655543322 2332 233445777
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH-HH-H
Q 024263 129 ASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL-IG-G 206 (270)
Q Consensus 129 ~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~-~g-~ 206 (270)
.+.-++.+|..++.- + ++..+. .. .++++....|.-|+...+ .-|=+-.++.+++..-...+++. .. .
T Consensus 79 Ga~YL~~lg~~~~~s---~-~~~~~~---~~--~~~~~~~~~f~~g~~~~l-~NPKailf~~a~~p~f~~~~~~~~~~~~ 148 (205)
T PRK10520 79 GAAYLIWLGIQQWRA---A-GAIDLH---TL--ASTQSRRRLFKRAVFVNL-TNPKSIVFLAALFPQFIMPQQPQLMQYL 148 (205)
T ss_pred HHHHHHHHHHHHHhC---C-Cccccc---cc--cCCccHHHHHHHHHHHHh-hCcHHHHHHHHHcccccCCCCchHHHHH
Confidence 777788899988722 1 111000 00 011122345777777765 35554333444443322222221 11 1
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 024263 207 TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR 262 (270)
Q Consensus 207 ~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~ 262 (270)
.+...+.+-...-....+...++.++..+.+|..++++++.|.+++.+|+++.++|
T Consensus 149 ~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g~~li~~~~~l~~~~ 204 (205)
T PRK10520 149 VLGVTTVVVDIIVMIGYATLAQRIARWIKGPKQMKALNKIFGSLFMLVGALLASAR 204 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 12222222111222233334455555444567778999999999999999887654
No 12
>COG1280 RhtB Putative threonine efflux protein [Amino acid transport and metabolism]
Probab=97.98 E-value=0.0081 Score=52.39 Aligned_cols=196 Identities=25% Similarity=0.212 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHH----HHhHHHHHhhc
Q 024263 48 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGAS----FAGKAYGQIGT 123 (270)
Q Consensus 48 ~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~----~~G~~~~~~~~ 123 (270)
..++..+.+.+....+| .|..-.+++.-.+ +.|| +++...+|..+...+.-.+.. .+-+......+
T Consensus 4 ~~~l~~~~~~~~~~~~P--GP~~~~v~~~~~~----~G~~----~g~~~~~G~~~G~~v~~~l~~~Gl~all~~~~~~f~ 73 (208)
T COG1280 4 TNLLAFLLAALVLAATP--GPDNLLVLARSLS----RGRR----AGLATALGIALGDLVHMLLAALGLAALLATSPALFT 73 (208)
T ss_pred HHHHHHHHHHHHHhcCC--CccHHHHHHHHHH----hcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 34555566666677665 4444344433221 2243 455555565544333322221 11122223345
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH
Q 024263 124 GLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL 203 (270)
Q Consensus 124 ~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~ 203 (270)
.+.++.+.-++.+|..++..-+ +.. + ....+.++......|.-|+...+ .-|=.--.+.+++.+-...++..
T Consensus 74 ~lk~~GaaYL~ylg~~~~ra~~---~~~--~--~~~~~~~~~~~~~~f~~G~~~~l-~NPK~~lf~la~~pqfv~~~~~~ 145 (208)
T COG1280 74 VLKLAGAAYLLYLGWKALRAGG---AAL--A--EEAAGAPSSSRRKAFRRGLLVNL-LNPKAILFFLAFLPQFVDPGAGL 145 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhccc---ccc--c--ccccccccchhHHHHHHHHHHHh-hCcHHHHHHHHHHhhhcCCCCch
Confidence 5677777788899998873211 000 0 00000011111357888888876 46766445556666555444332
Q ss_pred HHHHHHHHHHhhhH---HHHH-HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 024263 204 IGGTLLLSYTTGYV---APLL-LAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR 262 (270)
Q Consensus 204 ~g~~~l~~fglG~~---lPll-l~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~ 262 (270)
. ...+...++.+. .+.. .......+.+++.+.++..+++++..|.+++..|+++.+.+
T Consensus 146 ~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~G~~li~~g~~l~~~~ 207 (208)
T COG1280 146 V-LLQALILGLVFILVGFVVLALYALLAARLRRLLRRPRASRIINRLFGVLLIGFGVKLALSR 207 (208)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 122222222221 2222 22223333444332267899999999999999999987654
No 13
>PRK10958 leucine export protein LeuE; Provisional
Probab=97.85 E-value=0.015 Score=50.84 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=84.3
Q ss_pred hcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHH---HHhhchHHHHHHHHHHH
Q 024263 60 TSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF-AGKAY---GQIGTGLPLAASGLAIV 135 (270)
Q Consensus 60 ~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~-~G~~~---~~~~~~~~~~~G~lli~ 135 (270)
..++| .|..-..++.-. ++.|| +++.+.+|..+.+.+...+... ++..+ ....+.++++.+..++.
T Consensus 20 ~~~sP--GP~~~~v~~~~~----~~G~r----~~~~~~~G~~~g~~~~~~~~~~G~~~l~~~~p~~~~~l~~~G~~yL~~ 89 (212)
T PRK10958 20 IVLLP--GPNSLYVLSTAA----RRGVK----AGYRAACGVFIGDAVLMFLAAAGVASLLKATPLLFNVVKYLGAAYLLY 89 (212)
T ss_pred HhcCC--chHHHHHHHHHH----hhCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34556 555544444322 23343 3556666666666555444432 22222 23345567777778888
Q ss_pred HHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhc-cC-hHHHH-HHHHHH
Q 024263 136 MGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS-KD-PLIGG-TLLLSY 212 (270)
Q Consensus 136 ~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~-gs-~~~g~-~~l~~f 212 (270)
+|...+.- +........+ . . .++....|.-|+...+ .-|=+--.+.++...-... .+ ..... .+...+
T Consensus 90 la~~~~~~---~~~~~~~~~~--~--~-~~~~~~~f~~g~~~~l-~NPKa~lf~~a~~~~fi~~~~~~~~~~~~~l~~~~ 160 (212)
T PRK10958 90 LGVKMLRA---ALRRWRRRAA--S--A-APPYGAPFRRALILSL-TNPKAILFFVSFFVQFVDPNYAHPALSFLILATIL 160 (212)
T ss_pred HHHHHHHh---hccccccccc--c--c-CcchhHHHHHHHHHHh-hChHHHHHHHHHHhcccCCCCcchHHHHHHHHHHH
Confidence 99887732 1100000000 0 0 1122245777766654 2444322222333322222 11 11111 111122
Q ss_pred HhhhHHHHHHHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024263 213 TTGYVAPLLLAASFAGALQS-LLSFRKFSSWINPMSGALLLGGGLYTFL 260 (270)
Q Consensus 213 glG~~lPlll~~~~~~~~~~-~~~~~~~~~~i~~i~G~lli~~Gi~~~~ 260 (270)
......-........++.++ .++.+|..+|++|+.|.+++..|+++..
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~l~~~~i~l~~ 209 (212)
T PRK10958 161 QLVSFCYLSFLIFSGARLAAYFRRRKKLAAGGNSLVGLLFVGFAAKLAT 209 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22111112222333334433 2334566789999999999999998754
No 14
>PRK09304 arginine exporter protein; Provisional
Probab=97.73 E-value=0.021 Score=49.52 Aligned_cols=195 Identities=13% Similarity=-0.002 Sum_probs=95.6
Q ss_pred HHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHH---hhchH
Q 024263 50 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASF-AGKAYGQ---IGTGL 125 (270)
Q Consensus 50 ~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~-~G~~~~~---~~~~~ 125 (270)
++..+..|+..+++|= |..-..++.-. +++ .++...+|..+...+...+... ++..+.. ..+.+
T Consensus 5 ~~~g~~~g~~~~~tPG--P~~~~v~~~~~------~~~----~~~~~~~Gi~~g~~~~~~la~~Gl~~Ll~~~p~~~~~l 72 (207)
T PRK09304 5 YFQGFALGAAMILPLG--PQNAFVMNQGI------RRQ----YHLMIALLCALSDLVLICAGIFGGSALLMQSPWLLALV 72 (207)
T ss_pred HHHHHHHHHHHHhccC--hHHHHHHHHHH------ccc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888877653 22322222211 122 2556667776666665444332 2223332 33445
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHH
Q 024263 126 PLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG 205 (270)
Q Consensus 126 ~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g 205 (270)
+++.+.-++.+|..++..-+ + ++. + .+++. .+.++....|.-|+...+ .-|=+--.+.++...-..+.++...
T Consensus 73 ~~~Ga~YLlyLg~~~~rs~~-~-~~~-~-~~~~~--~~~~~~~~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~~~~~~~ 145 (207)
T PRK09304 73 TWGGVAFLLWYGFGAFKTAM-S-SNI-E-LASAE--VMKQGRWKIIATMLAVTW-LNPHVYLDTFVVLGSLGGQLDVEPK 145 (207)
T ss_pred HHHHHHHHHHHHHHHHHHhc-c-ccc-c-ccccc--ccCccHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHhccCcchh
Confidence 66677778889998873210 0 010 0 00000 111233456888887776 3555422211222211111122111
Q ss_pred -HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 024263 206 -GTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRLF 264 (270)
Q Consensus 206 -~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~~~ 264 (270)
...+.... ....-....+....+.++..+.+|..++++|+.|++++.+|+++...+..
T Consensus 146 ~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~in~~~g~~l~~~~~~l~~~~~~ 204 (207)
T PRK09304 146 RWFALGTIS-ASFLWFFGLALLAAWLAPRLRTAKAQRIINLFVGCVMWFIALQLARQGIA 204 (207)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 11122111 11222223344445555444445778899999999999999998877654
No 15
>PRK10229 threonine efflux system; Provisional
Probab=97.68 E-value=0.029 Score=48.40 Aligned_cols=191 Identities=15% Similarity=0.149 Sum_probs=92.8
Q ss_pred HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHH---HhhchHHHH
Q 024263 53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPLA 128 (270)
Q Consensus 53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G-~~~~---~~~~~~~~~ 128 (270)
.++.++...++| .|..-..+..-. +. ..+.++...+|....+.+...+..+.. ..+. ...+.++++
T Consensus 8 ~~~~~~~~~~sP--GP~~~~vi~~~~----~~----G~~~~~~~~~G~~~g~~i~~~l~~~Gl~~ll~~~p~~~~~l~~~ 77 (206)
T PRK10229 8 VAMVHIVALMSP--GPDFFFVSQTAV----SR----SRKEAMMGVLGITCGVMVWAGVALLGLHLILEKMAWLHTIIMVG 77 (206)
T ss_pred HHHHHHHHhcCC--CchhHHHHHHHH----hc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 455566777777 343333332211 12 234566777788777766654433222 2332 233456776
Q ss_pred HHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHH
Q 024263 129 ASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTL 208 (270)
Q Consensus 129 ~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~ 208 (270)
.+..++.+|..++.--+ + +. +..++.. ..+.++....|.-|+...+ .-|=+-..+.+++..-........ .
T Consensus 78 Ga~yLlylg~~~~~~~~-~-~~--~~~~~~~-~~~~~~~~~~f~~G~l~~l-~NPka~lf~~ai~~~f~~~~~~~~-~-- 148 (206)
T PRK10229 78 GGLYLCWMGYQMLRGAL-K-KE--DVAAEEP-QVELAKSGRSFLKGLLTNL-SNPKAIIYFGSVFSLFVGDNVGAG-A-- 148 (206)
T ss_pred HHHHHHHHHHHHHHhcc-c-cc--ccccccc-cccCccHHHHHHHHHHHhc-cCcHHHHHHHHHHHHHcCCCCcHH-H--
Confidence 77777888988873210 0 00 0000000 0011223346888888876 466664444454543322211111 1
Q ss_pred HHHHHhhhH----HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 024263 209 LLSYTTGYV----APLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDR 262 (270)
Q Consensus 209 l~~fglG~~----lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~ 262 (270)
...+..+.. .-....+....+....+..+|..+|++++.|++++..|++++++|
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~~g~~li~~~i~l~~~~ 206 (206)
T PRK10229 149 RWGLFALIIVETLAWFTVVASLFALPQMRRGYQRLAKWIDGFAGALFAGFGIHLIISR 206 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 112222221 111222222111111122346778999999999999999987653
No 16
>TIGR00949 2A76 The Resistance to Homoserine/Threonine (RhtB) Family protein.
Probab=97.63 E-value=0.024 Score=47.95 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHH---HhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCC
Q 024263 89 IIGDSIAFSLGLATTLALLGVGASF-AGKAYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANF 164 (270)
Q Consensus 89 ~l~~~l~f~lG~~~sy~~lG~l~~~-~G~~~~---~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~ 164 (270)
..++++.+.+|..+.+.++-.+... ++..+. .....++++.+..++.+|..++..- .+ +.. ..+++.. .++
T Consensus 17 G~~~~~~~~~G~~~g~~~~~~~~~~Gl~~l~~~~~~~~~~l~~~Ga~yLl~lg~~~~~~~-~~-~~~--~~~~~~~-~~~ 91 (185)
T TIGR00949 17 GRRAGVLTILGIALGDAIWIVLSLLGLAVLISKSVILFTVIKWLGGAYLIYLGIKMLRKK-SK-KQS--PAAQVEL-AEQ 91 (185)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcc-cc-ccc--ccccccc-ccC
Confidence 3456778888888877777655543 333333 2345567778888889999877310 00 000 0000000 111
Q ss_pred CChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccCh-HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 024263 165 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP-LIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI 243 (270)
Q Consensus 165 ~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~-~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i 243 (270)
++....|.-|+...+ .-|=+-..+.+++..-...+.. ..-........+....-....+....+.++.++.+|..+++
T Consensus 92 ~~~~~~f~~g~~~~~-~NPk~ilf~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 170 (185)
T TIGR00949 92 TTWKKSFRRGLLTNL-SNPKAVLFFISIFSQFINPNTPTWQLIVLGLTIIVETILWFYVLSLIFSRPAVRRKYSKQQKWI 170 (185)
T ss_pred ccHHHHHHHHHHHhc-cChHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 233456788877765 3555433333434332222222 11112222222222222333334444444333446778999
Q ss_pred HHHHHHHHHHHHHH
Q 024263 244 NPMSGALLLGGGLY 257 (270)
Q Consensus 244 ~~i~G~lli~~Gi~ 257 (270)
+++.|++++.+|+.
T Consensus 171 n~~~g~~l~~~~v~ 184 (185)
T TIGR00949 171 DGITGALFVGFGIR 184 (185)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999998874
No 17
>PF01914 MarC: MarC family integral membrane protein; InterPro: IPR002771 Members of this family are integral membrane proteins that includes the antibiotic resistance protein MarC. These proteins may be transporters. ; GO: 0016021 integral to membrane
Probab=97.50 E-value=0.017 Score=50.35 Aligned_cols=189 Identities=15% Similarity=0.152 Sum_probs=96.0
Q ss_pred HHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHH
Q 024263 56 AGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIV 135 (270)
Q Consensus 56 ~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~ 135 (270)
..+...++| +..+|.+++...+. ++++||+..++...+.....+.+...|-.+- +.++...+.+++..|+++.+
T Consensus 9 ~~lf~iinP--~g~ip~f~~lt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fgIsl~af~IaGGiiL~~ 82 (203)
T PF01914_consen 9 ITLFAIINP--IGNIPIFLSLTKGM-SPKERRRIARRASIIAFIILLIFAFFGQLIL---NFFGISLPAFRIAGGIILFL 82 (203)
T ss_pred HHHHHHHhH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHH
Confidence 345555555 45688888776443 3355667777777777777777766664432 33433345689999999999
Q ss_pred HHHHHHHHhhhhcccccccCchhhhh-cCCCChhHHHHHHHHHhhccCCCchH-HHHHHHHHHhhccChHHHHHHHHHHH
Q 024263 136 MGLNLLEIIELQLPSFFDNFDPRAAA-ANFPSSVQAYLAGLTFALAASPCSTP-VLATLLGYVATSKDPLIGGTLLLSYT 213 (270)
Q Consensus 136 ~Gl~~lg~~~~~~p~~~~~~~~~~~~-~~~~~~~~~fllG~~~gl~~~PC~~p-~l~~il~~a~~~gs~~~g~~~l~~fg 213 (270)
.|+.|+..-+. .. +.++..+. .+...-...+=+++..- + || ....++......+++..-.....+..
T Consensus 83 ia~~ml~~~~~----~~-~~~~~~~~~~~~~~~~ai~PLa~Pll-----a-GPG~It~vi~~~~~~~~~~~~~~~~~ai~ 151 (203)
T PF01914_consen 83 IALEMLFGSPS----SE-KSSPDEKEEAKDAEDIAIVPLAIPLL-----A-GPGTITTVIVLSAEAGSLQSLLIVLIAIL 151 (203)
T ss_pred HHHHHhCCCCc----cc-ccccchhhhhcccccceecccchhhc-----c-ChHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence 99999832111 10 00011000 01111111111222221 1 12 23344554444444322223333322
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 024263 214 TGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLDRL 263 (270)
Q Consensus 214 lG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~~~ 263 (270)
+-..+-.+. -..++++.|.. .++-.+.+.|+.|+++...|+-++++.+
T Consensus 152 ~~~~~~~l~-l~~a~~i~~~l-G~~g~~vi~Ri~Glil~aiavq~i~~Gl 199 (203)
T PF01914_consen 152 LVALITYLI-LRFADKIMRRL-GKTGLQVITRIMGLILAAIAVQMILSGL 199 (203)
T ss_pred HHHHHHHHH-HHHhHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222 22233333221 1345578999999999999998887654
No 18
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=97.45 E-value=0.044 Score=47.67 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=54.8
Q ss_pred HHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHH
Q 024263 55 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI 134 (270)
Q Consensus 55 ~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli 134 (270)
...+..-++| +...|.+++...+. ++++|++..++...+.....+.|...|-.+- +.++...+.+++..|+++.
T Consensus 11 ~~~Lf~iinP--ig~ipvfl~lt~~~-~~~~r~~ia~~~~l~a~~ill~f~~~G~~iL---~~fgIsl~afrIaGGiiL~ 84 (201)
T TIGR00427 11 FISLFAIINP--IGNIPIFISLTEYY-TAAERNKIAKKANISSFIILLIFLVFGDTIL---KLFGISIDAFRIAGGILLF 84 (201)
T ss_pred HHHHHHHhCc--chHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHH
Confidence 3355555555 56788888876443 3345666667777777777777777765432 3443334568999999999
Q ss_pred HHHHHHH
Q 024263 135 VMGLNLL 141 (270)
Q Consensus 135 ~~Gl~~l 141 (270)
..|+.|+
T Consensus 85 ~ia~~ml 91 (201)
T TIGR00427 85 TIAMDML 91 (201)
T ss_pred HHHHHHh
Confidence 9999998
No 19
>PF02683 DsbD: Cytochrome C biogenesis protein transmembrane region; InterPro: IPR003834 DsbA and DsbC, periplasmic proteins of Escherichia coli, are two key players involved in disulphide bond formation. DsbD generates a reducing source in the periplasm, which is required for maintaining proper redox conditions []. DipZ is essential for maintaining cytochrome c apoproteins in the correct conformations for the covalent attachment of haem groups to the appropriate pairs of cysteine residues [].; GO: 0017004 cytochrome complex assembly, 0055114 oxidation-reduction process, 0016020 membrane
Probab=97.43 E-value=0.0023 Score=55.74 Aligned_cols=88 Identities=27% Similarity=0.288 Sum_probs=63.5
Q ss_pred HHHHHHHHhhcC--cCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHhhchH
Q 024263 51 AVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA---YGQIGTGL 125 (270)
Q Consensus 51 ~~~f~~Gll~~l--sPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~---~~~~~~~~ 125 (270)
..+|+.|+..++ +||+.|++-.++++...+ ++..+....-..|++|+.+-+.+++.......+. ...+.+++
T Consensus 118 ~gaf~lG~~~~l~~~PC~~p~l~~il~~a~~~---~~~~~~~~ll~~y~lG~~lPll~~~~~~~~~~~~~~~~~~~~~~i 194 (211)
T PF02683_consen 118 LGAFLLGLLFGLVWSPCTGPILAAILALAASS---GSVLQGLLLLLAYGLGFGLPLLLIGLFSGSLLRRLRKLRRWSRWI 194 (211)
T ss_pred ccHHHHHHHHHHHhhhcchHHHHHHHHHHHcC---CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444544332 599999888887776542 2233455667799999999999999888766633 34556678
Q ss_pred HHHHHHHHHHHHHHHH
Q 024263 126 PLAASGLAIVMGLNLL 141 (270)
Q Consensus 126 ~~~~G~lli~~Gl~~l 141 (270)
+.+.|++++.+|+.++
T Consensus 195 ~~~~G~lli~~g~~~l 210 (211)
T PF02683_consen 195 KRISGILLIALGLYLL 210 (211)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999875
No 20
>PRK10995 inner membrane protein; Provisional
Probab=97.40 E-value=0.012 Score=51.79 Aligned_cols=83 Identities=18% Similarity=0.253 Sum_probs=53.9
Q ss_pred HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHH
Q 024263 53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGL 132 (270)
Q Consensus 53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~l 132 (270)
....++..-++| +...|++++...+. ++++|++..++...+.....+.+...|-.+- +.++...+.+++..|++
T Consensus 10 ~~~~~lf~iinP--~g~~pif~~lt~~~-~~~~r~~ia~~~~~~a~~ill~f~~~G~~il---~~fgIs~~a~rIaGGil 83 (221)
T PRK10995 10 LGLVVLLPLANP--LTTVALFLGLSGNM-TPEERNRQALMASVYVFAIMMVAFYAGQLVM---STFGISIPGLRIAGGLI 83 (221)
T ss_pred HHHHHHHHHhch--hhhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHCCCHHHHHHHHHHH
Confidence 334466666655 56788888876443 2345556666666666666666655554332 33433445689999999
Q ss_pred HHHHHHHHH
Q 024263 133 AIVMGLNLL 141 (270)
Q Consensus 133 li~~Gl~~l 141 (270)
+..+|+.|+
T Consensus 84 L~~igi~ml 92 (221)
T PRK10995 84 VAFIGFRML 92 (221)
T ss_pred HHHHHHHHh
Confidence 999999998
No 21
>COG0785 CcdA Cytochrome c biogenesis protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.0017 Score=57.38 Aligned_cols=90 Identities=26% Similarity=0.267 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhcC--cCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-H---HHHh
Q 024263 48 TSLAVIFGAGLVTSL--SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGK-A---YGQI 121 (270)
Q Consensus 48 ~~~~~~f~~Gll~~l--sPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~-~---~~~~ 121 (270)
.+..-.|..|+..++ +||..|.+...++.... +++-.+....-..|++|..+.|.+++...+...+ . +..+
T Consensus 124 ~~~~~~f~lGl~f~~~wtPC~gPil~sil~laa~---~~~~~~g~~ll~~Y~lGl~lP~~~~~~~~~~~~~~~~~~l~k~ 200 (220)
T COG0785 124 VTALGAFLLGLLFALGWTPCIGPILGSILALAAS---TGSVVLGALLLAAYALGLALPFLLLALLSGRALKAFSRKLRRH 200 (220)
T ss_pred CcchhHHHHHHHHHHHhccchhHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556666666654 69999988888776543 2233455667789999999999999999987776 3 3455
Q ss_pred hchHHHHHHHHHHHHHHHH
Q 024263 122 GTGLPLAASGLAIVMGLNL 140 (270)
Q Consensus 122 ~~~~~~~~G~lli~~Gl~~ 140 (270)
++.++++.|++++++|+.+
T Consensus 201 ~~~i~~~~G~lli~~Gv~l 219 (220)
T COG0785 201 SGAIEIVGGALLILLGLLL 219 (220)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6678999999999999875
No 22
>PRK11111 hypothetical protein; Provisional
Probab=97.25 E-value=0.042 Score=48.27 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=53.6
Q ss_pred HHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHH
Q 024263 55 GAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAI 134 (270)
Q Consensus 55 ~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli 134 (270)
...+...++| +..+|++++...+. ++++|++..++...+.....+.|...|-.+- +.++...+.+++..|+++.
T Consensus 14 ~~~Lf~iinP--ig~ipiflslt~~~-s~~~r~~ia~~a~l~a~~ill~f~~~G~~iL---~~fGIsl~afrIaGGiiL~ 87 (214)
T PRK11111 14 FIGLFALVNP--VGILPVFISMTSHQ-TAAERNKTNLTANLSVAIILLISLFLGDFIL---NLFGISIDSFRIAGGILVV 87 (214)
T ss_pred HHHHHHHhCc--chhHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHH
Confidence 3456666655 56789998876543 2345666666776777766666666654332 2333333568999999999
Q ss_pred HHHHHHH
Q 024263 135 VMGLNLL 141 (270)
Q Consensus 135 ~~Gl~~l 141 (270)
..|+.|+
T Consensus 88 ~ial~Ml 94 (214)
T PRK11111 88 TIAMSMI 94 (214)
T ss_pred HHHHHHh
Confidence 9999998
No 23
>PRK10323 cysteine/O-acetylserine exporter; Provisional
Probab=97.20 E-value=0.12 Score=44.41 Aligned_cols=151 Identities=12% Similarity=0.021 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-HHHH---HhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCCh
Q 024263 92 DSIAFSLGLATTLALLGVGASFAG-KAYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSS 167 (270)
Q Consensus 92 ~~l~f~lG~~~sy~~lG~l~~~~G-~~~~---~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~ 167 (270)
+++...+|..+.+.+...+..... .... ...+.++++.+.-++.+|..++.- + ++. +.. +.+.
T Consensus 38 ~a~~~~~G~~~g~~~~~~~~~~g~~~l~~~~p~~~~vlk~~Ga~YLlyLg~~~~~s---~-~~~----~~~--~~~~--- 104 (195)
T PRK10323 38 QSTRVLAGMSLGFLIVMLLCAGISFSLAVIDPAAVHLLSWAGAAYIVWLAWKIATS---P-TKE----DGL--QAKP--- 104 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-Ccc----ccC--CCCC---
Confidence 355666676666666543333222 2222 223445666666678889887621 1 110 000 0111
Q ss_pred hHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHH-H-HHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHH
Q 024263 168 VQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIG-G-TLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINP 245 (270)
Q Consensus 168 ~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g-~-~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~ 245 (270)
..|.-|+...+ .-|=+--.+.+++..-...+++... . .+...+.+....-.........+.++. .+|++++++|
T Consensus 105 -~~f~~G~~~~l-~NPKa~lf~~a~~~~f~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~ 180 (195)
T PRK10323 105 -ISFWASFALQF-VNVKIILYGITALSTFVLPQTQALSWVVGVSVLLAMIGTFGNVCWALAGHLFQRL--FRQYGRQLNI 180 (195)
T ss_pred -hhHHHHHHHHh-HCHHHHHHHHHHHHHhhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence 23556666654 3455433334444443332222111 1 111112211111111222222334332 3356789999
Q ss_pred HHHHHHHHHHHHHH
Q 024263 246 MSGALLLGGGLYTF 259 (270)
Q Consensus 246 i~G~lli~~Gi~~~ 259 (270)
+.|.+++..|++++
T Consensus 181 ~~g~~l~~~a~~l~ 194 (195)
T PRK10323 181 VLALLLVYCAVRIF 194 (195)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998865
No 24
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=96.95 E-value=0.032 Score=49.35 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHH-hhhcCcc
Q 024263 244 NPMSGALLLGGGLYTFL-DRLFPTT 267 (270)
Q Consensus 244 ~~i~G~lli~~Gi~~~~-~~~~~~~ 267 (270)
..+.|-+|+..|+|+++ .-+.|+.
T Consensus 160 p~~LG~~Mi~~GlyfLl~aliiPn~ 184 (224)
T PF09930_consen 160 PIILGNFMIFLGLYFLLSALIIPNY 184 (224)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45789999999999884 4455553
No 25
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.68 E-value=0.02 Score=57.30 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=63.4
Q ss_pred hhHHHHHHHHHhhccCCCchHHHHHHHHHHhhcc---ChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 024263 167 SVQAYLAGLTFALAASPCSTPVLATLLGYVATSK---DPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWI 243 (270)
Q Consensus 167 ~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~g---s~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i 243 (270)
...+|+.|++.++ +||+.|++-.........+ +...+...-++|.+|.++-+.+++...+..-.........+|+
T Consensus 169 l~~afl~Glll~l--~PCvlP~lpi~~~~~~~~~~~~~~~~~~~~~l~y~lG~~~ty~~lG~~a~~~G~~~~~~~q~~~~ 246 (571)
T PRK00293 169 LLWFFLIGIGLAF--TPCVLPMYPILSGIVLGGKQRLSTARALLLSFVYVQGMALTYTLLGLVVAAAGLQFQAALQHPYV 246 (571)
T ss_pred HHHHHHHHHHHhc--cchhhHhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4568888988876 9999988654444333222 3456677788999999999888887666542111111235788
Q ss_pred HHHHHHHHHHHHHHHH
Q 024263 244 NPMSGALLLGGGLYTF 259 (270)
Q Consensus 244 ~~i~G~lli~~Gi~~~ 259 (270)
....+++++++|+.++
T Consensus 247 ~~~~~~l~v~lgL~~~ 262 (571)
T PRK00293 247 LIGLSILFVLLALSMF 262 (571)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8899999999998764
No 26
>PF09948 DUF2182: Predicted metal-binding integral membrane protein (DUF2182); InterPro: IPR018688 This family of various hypothetical bacterial membrane proteins having predicted metal-binding properties has no known function.
Probab=96.66 E-value=0.068 Score=46.16 Aligned_cols=148 Identities=14% Similarity=0.103 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh-------chHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhc
Q 024263 90 IGDSIAFSLGLATTLALLGVGASFAGKAYGQIG-------TGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA 162 (270)
Q Consensus 90 l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~-------~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~ 162 (270)
......|..|-..+-+..|..+..+...++... +.-.++.+.++++.|++++.-.|..=-+.-++-..-....
T Consensus 36 ~~~~~~f~~GYl~vW~~~g~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~Ll~AG~yQ~sp~K~~cL~~Cr~p~~f~~~~ 115 (191)
T PF09948_consen 36 ARSTALFVAGYLAVWLAFGLVATALQWALHQLALLSPMMASASPWLAGAVLLAAGLYQFSPLKQACLNHCRSPLSFLAFH 115 (191)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhhhhHHHHHHHHHHHHHhccHHHHHHHHHCCCcchHhhcC
Confidence 455678999999999999999877766554321 1235778888999999998655432111101000000112
Q ss_pred CCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 024263 163 NFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSW 242 (270)
Q Consensus 163 ~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~ 242 (270)
-+.+..+++-+|+-.|..-..|+-++... +++.|.....-+..++.+. ..+ |....+++
T Consensus 116 wr~g~~~alr~Gl~hG~~CvGCCWaLMll-----------------mfv~G~mnl~wMa~lt~~~-~~E---K~~p~g~~ 174 (191)
T PF09948_consen 116 WRAGARGALRMGLRHGLYCVGCCWALMLL-----------------MFVVGVMNLAWMAALTALM-FAE---KLLPWGRR 174 (191)
T ss_pred CCcccchHHHHHHHHccHHHHHHHHHHHH-----------------HHHhccccHHHHHHHHHHH-HHH---HhCCcchH
Confidence 33457889999999999888888655332 2222223322222222211 122 23456788
Q ss_pred HHHHHHHHHHHHHHHH
Q 024263 243 INPMSGALLLGGGLYT 258 (270)
Q Consensus 243 i~~i~G~lli~~Gi~~ 258 (270)
+.|..|+.+++.|+.+
T Consensus 175 l~r~~G~~l~~~g~~l 190 (191)
T PF09948_consen 175 LSRAVGVALIVWGVLL 190 (191)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999999874
No 27
>PRK10739 putative antibiotic transporter; Provisional
Probab=96.66 E-value=0.24 Score=42.97 Aligned_cols=79 Identities=13% Similarity=0.226 Sum_probs=51.4
Q ss_pred HHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHHH
Q 024263 57 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM 136 (270)
Q Consensus 57 Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~~ 136 (270)
.+...++| +...|.+++...+. ++++|||..++...+.....+.|...|=.+- +.++...+.+++..|+++...
T Consensus 10 ~Lf~iinP--ig~ipiflslt~~~-~~~~r~~ia~~a~~~a~~ill~f~~~G~~iL---~~fGIsl~afrIAGGilL~~i 83 (197)
T PRK10739 10 LLILIMDP--LGNLPIFMSVLKHL-EPKRRRAIMIRELLIALLVMLVFLFAGEKIL---AFLNLRTETVSISGGIILFLI 83 (197)
T ss_pred HHHHHHhH--hhHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHH
Confidence 44455444 56788888876443 3345666666676666666666666654332 333333356899999999999
Q ss_pred HHHHH
Q 024263 137 GLNLL 141 (270)
Q Consensus 137 Gl~~l 141 (270)
|+.|+
T Consensus 84 al~ml 88 (197)
T PRK10739 84 AIKMI 88 (197)
T ss_pred HHHHh
Confidence 99998
No 28
>COG2095 MarC Multiple antibiotic transporter [Intracellular trafficking and secretion]
Probab=96.43 E-value=0.26 Score=42.97 Aligned_cols=79 Identities=20% Similarity=0.304 Sum_probs=55.3
Q ss_pred HHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHHH
Q 024263 57 GLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVM 136 (270)
Q Consensus 57 Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~~ 136 (270)
.+....+|= .-+|.+.+..... +.++|++..++...+.+.....|...|-..- +.++...+.+++..|+++...
T Consensus 13 ~Lf~i~dP~--G~ipvf~slt~~~-~~~~r~~v~~ra~i~a~~ill~f~~~G~~il---~~fgIsi~a~rIAGGilLf~i 86 (203)
T COG2095 13 LLFAIIDPI--GNLPVFISLTKGL-SPEERNRVALRASIIALLILLVFLLLGEGIL---RFFGISIDAFRIAGGILLFLI 86 (203)
T ss_pred HHHHHhCCC--chhHHHHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhCCchhHHHHhhhHHHHHH
Confidence 444445654 3567777765433 2356777888888999998888888875543 334333356899999999999
Q ss_pred HHHHH
Q 024263 137 GLNLL 141 (270)
Q Consensus 137 Gl~~l 141 (270)
|+.|+
T Consensus 87 a~~ml 91 (203)
T COG2095 87 ALRML 91 (203)
T ss_pred HHHHh
Confidence 99998
No 29
>TIGR00948 2a75 L-lysine exporter.
Probab=96.36 E-value=0.5 Score=39.70 Aligned_cols=151 Identities=13% Similarity=-0.007 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH-HHH---HhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChh
Q 024263 93 SIAFSLGLATTLALLGVGASFAGK-AYG---QIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSV 168 (270)
Q Consensus 93 ~l~f~lG~~~sy~~lG~l~~~~G~-~~~---~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~ 168 (270)
++...+|..+...+...+..+... .+. ...+.+.++.+..++.+|..++.--+ +.+ .+ . .....++++..
T Consensus 22 g~~~~~G~~~g~~i~~~~~~~Gl~~ll~~~p~~~~~l~~~Ga~YLlylg~~~~r~~~-~~~--~~-~--~~~~~~~~~~~ 95 (177)
T TIGR00948 22 VLLIVALCCICDLVLIAAGVFGVAALLAASPILLAVLTWGGALFLLWYGFLAAKTAW-RGP--GA-L--VPDEPKKMGLK 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccc--cc-c--ccccccccCHH
Confidence 667777888777766554443222 333 23345677777788889998873211 100 00 0 00001112334
Q ss_pred HHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHH
Q 024263 169 QAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSG 248 (270)
Q Consensus 169 ~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G 248 (270)
..|.-|+...+ .-|=+...+.++......+.+...-..+...+.+....-....+...++.+++.+.+|..++++++.|
T Consensus 96 ~~f~~G~~~~l-~NPKa~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~i~~~~g 174 (177)
T TIGR00948 96 KVLAMTLAVTL-LNPHVYLDTVVLIGALGLQFSDLLRWLFAAGAIAASLVWFASLAFGAARLSPLLASPKVWRIINLVVA 174 (177)
T ss_pred HHHHHHHHHHH-hCchHHHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHh
Confidence 56888888876 46665332222222222211111111111222222222222333444455544445567788999888
Q ss_pred HH
Q 024263 249 AL 250 (270)
Q Consensus 249 ~l 250 (270)
++
T Consensus 175 ~~ 176 (177)
T TIGR00948 175 VV 176 (177)
T ss_pred hc
Confidence 64
No 30
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=96.17 E-value=0.96 Score=41.03 Aligned_cols=65 Identities=18% Similarity=0.229 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 024263 48 TSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ 120 (270)
Q Consensus 48 ~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~ 120 (270)
..+..+|+.|+.=++.|=-.-.+ ..+|..+ +|+..+.++.+.+|-.++-.+.+.++..+...+.+
T Consensus 3 ~ll~laf~~G~~HAl~PgH~kai--~~~~~~~------~~~~~~~g~~~~lg~s~~~~~~ai~lv~~~~~~~~ 67 (282)
T PF03824_consen 3 SLLLLAFLYGLLHALGPGHGKAI--IASYLLS------SRRALRVGLFFGLGHSLTHGLSAILLVLLALWLSE 67 (282)
T ss_pred HHHHHHHHHHHHHccCCChHHHH--HHHHHhh------cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45778999999999998876655 4455432 22345678888888888888888777766655543
No 31
>PF13386 DsbD_2: Cytochrome C biogenesis protein transmembrane region
Probab=95.94 E-value=0.065 Score=46.14 Aligned_cols=82 Identities=24% Similarity=0.183 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHH
Q 024263 49 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLA 128 (270)
Q Consensus 49 ~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~ 128 (270)
.....|..|++.++.||. ++.+....... ..+-.+.......|.+|........|.....+.+..+ +.+...
T Consensus 117 ~~~~~~~lG~l~gllPCg-~~y~~l~~A~~----s~s~~~G~l~m~~FgLGT~p~ll~~~~~~~~l~~~~~---~~~~r~ 188 (199)
T PF13386_consen 117 GPWGAFLLGFLNGLLPCG-PVYFALALAAA----SGSPLYGALLMLAFGLGTLPALLLAGLLAGKLSRRLR---RRLLRL 188 (199)
T ss_pred CccHHHHHHHHHHHhHHH-HHHHHHHHHHH----cCChHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 356688899999999996 44544432222 1334456677889999999888888888877666554 344558
Q ss_pred HHHHHHHHHH
Q 024263 129 ASGLAIVMGL 138 (270)
Q Consensus 129 ~G~lli~~Gl 138 (270)
.|.+++++|+
T Consensus 189 ~g~~~i~~G~ 198 (199)
T PF13386_consen 189 AGVLLIILGI 198 (199)
T ss_pred HHHHHHHHHH
Confidence 8888888886
No 32
>PRK10019 nickel/cobalt efflux protein RcnA; Provisional
Probab=94.38 E-value=0.55 Score=42.93 Aligned_cols=84 Identities=29% Similarity=0.314 Sum_probs=59.4
Q ss_pred HHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-H---HHhhch---H
Q 024263 53 IFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKA-Y---GQIGTG---L 125 (270)
Q Consensus 53 ~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~-~---~~~~~~---~ 125 (270)
.+..|+..++-||..++.-.+++... +.-...+...++|.+|..++.+.+|.++....+. . ...++. .
T Consensus 180 ~l~igl~~Gl~PCpgAl~VLL~a~~l-----g~~~~Gi~~vlafslGtaltm~~vgll~~~~~r~~~~~~~~~~~~~~~~ 254 (279)
T PRK10019 180 ILLFGLTGGLIPCPAAITVLLICIQL-----KALTLGATLVLSFSIGLALTLVTVGVGAAISVQQAAKRWSGFNTLARRA 254 (279)
T ss_pred hhHHHHHhccCCCHHHHHHHHHHHHh-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 45678888889998887766655533 2233456778899999999999999988533322 1 112333 4
Q ss_pred HHHHHHHHHHHHHHHH
Q 024263 126 PLAASGLAIVMGLNLL 141 (270)
Q Consensus 126 ~~~~G~lli~~Gl~~l 141 (270)
+++.+.+.+++|+.+.
T Consensus 255 p~~s~~l~i~~G~~~~ 270 (279)
T PRK10019 255 PYFSSLLIGLVGVYMG 270 (279)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5899999999999876
No 33
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=89.49 E-value=2.6 Score=42.15 Aligned_cols=90 Identities=24% Similarity=0.311 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHhhccCCCchHHHHHHHHHHhh----ccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHhhhhhh
Q 024263 166 SSVQAYLAGLTFALAASPCSTPVLATLLGYVAT----SKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQ-SLLSFRKFS 240 (270)
Q Consensus 166 ~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~----~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~-~~~~~~~~~ 240 (270)
+...+|+.|+...+ +||.-|++ +++..... ..|...+..+-+.|+.|+++-..+++....... .|. ..-.+
T Consensus 169 ~ll~afl~GLlL~f--tPCVLPml-pl~s~~v~g~~~~~s~~ra~~Ls~~yv~~mALay~~lgl~~~~~gl~~q-~qLQ~ 244 (569)
T COG4232 169 SLLLAFLGGLLLNF--TPCVLPML-PLLSGIVLGSAKRASKARAFGLSFVYVQGMALAYTLLGLVAAAAGLGWQ-AQLQQ 244 (569)
T ss_pred HHHHHHHHHHHHhh--ccHhhhhH-HHHHHHHhccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHhccchhh-HhHcc
Confidence 35677888887776 99999885 44433322 246677778888899998877777766544321 121 12235
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024263 241 SWINPMSGALLLGGGLYTF 259 (270)
Q Consensus 241 ~~i~~i~G~lli~~Gi~~~ 259 (270)
+|+--...++|+++++-|+
T Consensus 245 P~vl~~la~lf~llALSMf 263 (569)
T COG4232 245 PWVLGGLAALFVLLALSMF 263 (569)
T ss_pred cHHHHHHHHHHHHHHHHhh
Confidence 7777777788888776654
No 34
>COG5486 Predicted metal-binding integral membrane protein [Function unknown]
Probab=89.27 E-value=10 Score=33.96 Aligned_cols=169 Identities=19% Similarity=0.182 Sum_probs=98.6
Q ss_pred cCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------hhchHHHHHHHHHHH
Q 024263 63 SPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTGLPLAASGLAIV 135 (270)
Q Consensus 63 sPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~-------~~~~~~~~~G~lli~ 135 (270)
.|-..||+-.+.. +.++ .+.|.+...+...|..|-..+....|.++..+-...+. ..+.-.++.|..+++
T Consensus 98 lPsaaPmi~~ya~-i~r~--~~~~g~pva~t~~f~aGyl~vW~af~llat~l~~l~~a~al~~p~~s~~~~l~gg~~L~v 174 (283)
T COG5486 98 LPSAAPMILLYAE-IGRT--AAIRGEPVAHTLVFVAGYLLVWAAFGLLATGLQWLLHAFALLGPILSPLSGLAGGLTLLV 174 (283)
T ss_pred CccccHHHHHHHH-HHHH--HHhcCCceeehHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccchhcchhhHHHHHHHHH
Confidence 4888777755532 1111 11222345668899999999999998887643333321 122346677778899
Q ss_pred HHHHHHHHhh------hhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHH
Q 024263 136 MGLNLLEIIE------LQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLL 209 (270)
Q Consensus 136 ~Gl~~lg~~~------~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l 209 (270)
-|++++.-.| ++-|-.+- . +.-..+.++.++|-+|+==|+...-|+=.+. +++
T Consensus 175 AGlYQft~LK~~CL~qCrtPl~fl--~--shw~fr~~p~ga~~LGlrhGlyClGCCWALm-----------------~ll 233 (283)
T COG5486 175 AGLYQFTTLKHACLSQCRTPLSFL--F--SHWRFRAKPVGAFRLGLRHGLYCLGCCWALM-----------------LLL 233 (283)
T ss_pred hhhhhhccHHHHHHHHccchHHHH--H--HhcCcccCcchhhhhccccccchHHHHHHHH-----------------HHH
Confidence 9999884332 23332110 0 0012346678899999999988778873221 223
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024263 210 LSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTF 259 (270)
Q Consensus 210 ~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~ 259 (270)
++=|.+...-+..++.+. ...|....++++.|+.|.++...|.+.+
T Consensus 234 fv~Gvmnl~Wma~ial~v----liEK~~~~Gr~~srv~gall~a~gaw~l 279 (283)
T COG5486 234 FVVGVMNLLWMALIALLV----LIEKQTSPGRRLSRVAGALLAAAGAWLL 279 (283)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHhccCcccchHHHHHHHHHHHHHhhc
Confidence 333444433333333321 1122345678888899999999998853
No 35
>COG2215 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=87.92 E-value=8.8 Score=35.41 Aligned_cols=88 Identities=24% Similarity=0.241 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---------
Q 024263 49 SLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYG--------- 119 (270)
Q Consensus 49 ~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~--------- 119 (270)
+.-..+..|+..++-||..++....+++..+ -..-.+...+++++|..+|-+.++.++-..-+..-
T Consensus 200 ~~~~~~~~~l~~GLrPCpgAi~VLlfal~~g-----l~~~Gil~VlamS~GtalTvs~lA~~av~ak~~a~~~~g~~~~~ 274 (303)
T COG2215 200 DWKQQWLFGLTGGLRPCPGAIFVLLFALSLG-----LYTLGILSVLAMSIGTALTVSALALLAVTAKNTAVRLSGFRTLA 274 (303)
T ss_pred cHHHHHHHHHHhcCccCcHHHHHHHHHHHhc-----hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 3445667788888899999988777776532 12234667888999999997777666544333211
Q ss_pred -HhhchHHHHHHHHHHHHHHHHH
Q 024263 120 -QIGTGLPLAASGLAIVMGLNLL 141 (270)
Q Consensus 120 -~~~~~~~~~~G~lli~~Gl~~l 141 (270)
.+.....++.|.+++++|+.++
T Consensus 275 ~~~~~~~~l~~gli~l~~g~~~l 297 (303)
T COG2215 275 KRISYIVSLLGGLIGLYFGLHLL 297 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122456778888889998877
No 36
>TIGR00704 NaPi_cotrn_rel Na/Pi-cotransporter. This model describes essentially the full length of an uncharacterized protein from Bacillus subtilis and correponding lengths of longer proteins from E. coli and Treponema pallidum. PSI-BLAST analysis converges to demonstrate homology to one other group of proteins, type II sodium/phosphate (Na/Pi) cotransporters. A well-conserved repeated domain in this family, approximately 60 residues in length, is also repeated in the Na/Pi cotransporters, although with greater spacing between the repeats. The two families share additional homology in the region after the first repeat, share the properly of having extensive hydrophobic regions, and may be similar in function.
Probab=86.14 E-value=16 Score=33.83 Aligned_cols=131 Identities=13% Similarity=0.047 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-hhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccChH
Q 024263 125 LPLAASGLAIVMGLNLLEI-IELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPL 203 (270)
Q Consensus 125 ~~~~~G~lli~~Gl~~lg~-~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~ 203 (270)
+..+.|+-++++|+.+++. .+ +. ..++.++... +-.+++..+++.|.......=+-+......+-...+.--+..
T Consensus 5 ~~llgGlgl~l~Gl~~~~~~l~-~~--~g~~~~~~l~-~~t~~~~~a~l~G~~~Tal~QSSsa~t~i~i~lv~~G~l~~~ 80 (307)
T TIGR00704 5 LHLLSAVAFLLWGMHIVRTGVM-RV--FGARLRTVLS-RSTEKKPLAFLAGIGVTAIVQSSNATTVLVISFVAAGVLSLA 80 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HH--hhhHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH
Confidence 4566777788899998833 22 11 0111111111 223567778888888776433222222222111111122556
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH----------HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024263 204 IGGTLLLSYTTGYVAPLLLAASFAG----------ALQSLLSFRKFSSWINPMSGALLLGGGLYTF 259 (270)
Q Consensus 204 ~g~~~l~~fglG~~lPlll~~~~~~----------~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~ 259 (270)
.+..++..=++|+++.-.+++.-.. -...+.+.+|.+++-+-+.|+-++..|+.++
T Consensus 81 ~al~iilGANiGTt~t~~l~s~~~~~~~p~~~~~g~~~~~~~~~~~~~~G~~l~G~gllf~gl~~m 146 (307)
T TIGR00704 81 PAIVIILGANVGTTLTARILAFDLSILSPLLIIGGVLFFLGRQSRAGQLGRSGIGLGLIFLALELI 146 (307)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666667777555444332111 1111122345566777778888888887765
No 37
>PF03596 Cad: Cadmium resistance transporter; InterPro: IPR004676 These proteins are members of the Cadmium Resistance (CadD) Family. To date, this family of proteins has only been found in Gram-positive bacteria. The CadD family includes two close orthologues in two Staphylococcus species that have been reported to function in cadmium resistance, and another staphylococcal protein that has been reported to possibly function in quaternary ammonium ion export.
Probab=86.03 E-value=22 Score=30.75 Aligned_cols=74 Identities=11% Similarity=0.063 Sum_probs=45.5
Q ss_pred cCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024263 181 ASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFL 260 (270)
Q Consensus 181 ~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~ 260 (270)
...|.-.+|.+.++ +.|+.+-...+..|.+..++-..+. ....+.+... +..+|+-+++..+++|..|+|.++
T Consensus 108 nGgDNigIYiP~Fa----~~s~~~l~v~l~vF~ilv~v~c~la-~~l~~~p~i~--~~leryg~~l~p~v~I~LGi~Il~ 180 (191)
T PF03596_consen 108 NGGDNIGIYIPLFA----SLSLAELIVILIVFLILVGVWCFLA-YKLARIPIIA--EFLERYGRWLVPIVYIGLGIYILI 180 (191)
T ss_pred cCCCeEEEeehhhh----cCCHHHHHHHHHHHHHHHHHHHHHH-HHHhCChHHH--HHHHHhcccHHHHHHHHhCceeeE
Confidence 36788777777664 4456666777777777764443332 2222222222 234556667788899999999765
Q ss_pred h
Q 024263 261 D 261 (270)
Q Consensus 261 ~ 261 (270)
+
T Consensus 181 e 181 (191)
T PF03596_consen 181 E 181 (191)
T ss_pred e
Confidence 3
No 38
>TIGR00802 nico high-affinity nickel-transporter, HoxN/HupN/NixA family. This family is found in both Gram-negative and Gram-positive bacteria. The functionally characterized members of the family catalyze uptake of either Ni2+ or Co2+ in a proton motive force-dependent process. Topological analyses with the HoxN Ni2+ transporter of Ralstonia eutropha (Alcaligenes eutrophus) suggest that it possesses 8 TMSs with its N- and C-termini in the cytoplasm.
Probab=83.52 E-value=16 Score=33.40 Aligned_cols=162 Identities=16% Similarity=0.151 Sum_probs=82.4
Q ss_pred HHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh----hc---h
Q 024263 52 VIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI----GT---G 124 (270)
Q Consensus 52 ~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~----~~---~ 124 (270)
+++..|+-=++-|=.+..+--...-.. +++|+....+..|++|=..+-.+..++++.....+.+. ++ .
T Consensus 3 la~~lGlrHA~DaDHiaAId~~trkl~-----~~~~~~~~~G~~fslGHs~vV~l~~l~ia~~~~~~~~~~~~~~~igg~ 77 (280)
T TIGR00802 3 LAYVLGLRHAFDADHIAAIDNTTRKLM-----QQGRRPLGVGFFFSLGHSTVVVLATVLIAVASALLTERLDGLHEIGGL 77 (280)
T ss_pred HHHHhhhhccCCcchhhhhHHHHHHHh-----hcCCCceeeeeeecCccHHHHHHHHHHHHHHHHHHHhhchhHHhccce
Confidence 355566665655555443322221111 12334566788999998877776666655444333221 22 1
Q ss_pred -HHHHHHHHHHHHHHHHH----HHhh-hhccccc-------------ccCchh-hhh--cCCCChhHHHHHHHHHhhccC
Q 024263 125 -LPLAASGLAIVMGLNLL----EIIE-LQLPSFF-------------DNFDPR-AAA--ANFPSSVQAYLAGLTFALAAS 182 (270)
Q Consensus 125 -~~~~~G~lli~~Gl~~l----g~~~-~~~p~~~-------------~~~~~~-~~~--~~~~~~~~~fllG~~~gl~~~ 182 (270)
-..+.+.+++++|+.-+ +..+ ++-.+.- +.+..| .++ +..++++.-+.+|++||+.+=
T Consensus 78 iGt~VS~~FL~~ig~~Nl~iL~~~~~~~r~~r~g~~~~~~l~~~l~~rG~~~Rll~~lf~~v~~pw~mypvG~LFGLGFD 157 (280)
T TIGR00802 78 IGTLVSALFLLIIALLNLVILRNLLRLFRKVRRGIYDEADLEALLGNRGLLTRLLGPLFRLVTKSWHMYPVGFLFGLGFD 157 (280)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhHHHhhhccCcHHHHHHHHHHHhcCchHHHHHHHHHHcccc
Confidence 25667777777776654 2111 1111100 000001 001 124677888999999998654
Q ss_pred CCchHHHHHHHHHHhhccChH-HHHHHHHHHHhhhHH
Q 024263 183 PCSTPVLATLLGYVATSKDPL-IGGTLLLSYTTGYVA 218 (270)
Q Consensus 183 PC~~p~l~~il~~a~~~gs~~-~g~~~l~~fglG~~l 218 (270)
.-+---+.++-..+++++-+. .-..+.+.|..|+++
T Consensus 158 TATEIaLL~isa~~a~~g~~~~~il~lP~LFtaGM~L 194 (280)
T TIGR00802 158 TATEVALLGLSASAAARGLSIAAVLSLPVLFAAGMAL 194 (280)
T ss_pred hHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhhhHH
Confidence 443223334333333344344 344557788888854
No 39
>PRK11469 hypothetical protein; Provisional
Probab=83.22 E-value=28 Score=29.81 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=20.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhh
Q 024263 238 KFSSWINPMSGALLLGGGLYTFLDR 262 (270)
Q Consensus 238 ~~~~~i~~i~G~lli~~Gi~~~~~~ 262 (270)
+.++|.+.+.|+++++.|++++++.
T Consensus 161 ~~g~~a~~lgG~iLI~iGi~il~~h 185 (188)
T PRK11469 161 IIGKKAEILGGLVLIGIGVQILWTH 185 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788999999999999987653
No 40
>TIGR03717 R_switched_YjbE integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.
Probab=80.59 E-value=34 Score=28.99 Aligned_cols=142 Identities=18% Similarity=0.086 Sum_probs=71.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhc
Q 024263 83 GKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAA 162 (270)
Q Consensus 83 ~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~ 162 (270)
++.|++....+....+..-..+...|.-+ ++ .+++++..|.+++..+..|+...+ .+ .+.+. +
T Consensus 29 ~~~r~~~~~~G~~~A~vlr~if~~~G~~l------l~--~~~~~iaGGllLl~ia~~ml~~~~------~~-~~~~~--~ 91 (176)
T TIGR03717 29 AHQRKKAIFWGTAGAIVLRILLTAVAVYL------LA--IPFLKLIGGLLLLWIGWKLLLEEE------EE-QGGDV--K 91 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH--hHHHHHHHHHHHHHHHHHHHhccc------cc-ccccc--c
Confidence 34565666666555555555555544322 22 256789999999999999973211 00 00000 1
Q ss_pred CCCChhHHH----HHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhh
Q 024263 163 NFPSSVQAY----LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRK 238 (270)
Q Consensus 163 ~~~~~~~~f----llG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~ 238 (270)
+.++.+.+. ..=+.+++ =++++..+.+.+ =.....+|+..++|++..+. +.+.+ +-+
T Consensus 92 ~~~~~~~~v~~I~~~D~~fS~----------DsV~a~~~~~~~----~~~li~~g~~i~i~~m~~~s--~~~~~---~~~ 152 (176)
T TIGR03717 92 GSTTLWAAIKTIVIADAVMSL----------DNVLAVAGAAHG----HLGLLIFGLLLSIPIIVWGS--TLILK---LMD 152 (176)
T ss_pred ccCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHhcC----CchHHHHHHHHHHHHHHHHH--HHHHH---HHH
Confidence 122222221 11122221 122322222221 13455667777778777543 22222 234
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q 024263 239 FSSWINPMSGALLLGGGLYTFL 260 (270)
Q Consensus 239 ~~~~i~~i~G~lli~~Gi~~~~ 260 (270)
..++++.....++...|+=+++
T Consensus 153 ~~p~l~~~~~~~L~~ig~kl~~ 174 (176)
T TIGR03717 153 RFPWIIYIGAALLGYVAGEMIV 174 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4588888888888888876553
No 41
>COG2836 Uncharacterized conserved protein [Function unknown]
Probab=76.71 E-value=31 Score=30.62 Aligned_cols=84 Identities=26% Similarity=0.247 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHH
Q 024263 50 LAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAA 129 (270)
Q Consensus 50 ~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~ 129 (270)
....+..|++-++-||- ++.+.....+.+ .+-.+....-++|.+|..=.....|.....+-+.. ++.+....
T Consensus 132 ~~~~~~lG~~wG~lPCG-lVYs~l~~A~~t----gS~~~Gal~mlaFGlGTlP~ll~~G~~s~~~s~~~---r~~~~rl~ 203 (232)
T COG2836 132 LPGALFLGMLWGLLPCG-LVYSALAYALST----GSAFEGALVMLAFGLGTLPNLLAMGIFSSKLSKSS---RKRLNRLS 203 (232)
T ss_pred chHHHHHHHHhcccchH-HHHHHHHHHHHc----CCHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH---HHHHHHHH
Confidence 66778889999999997 455555433322 33445566778899998888888887765443333 34466677
Q ss_pred HHHHHHHHHHHH
Q 024263 130 SGLAIVMGLNLL 141 (270)
Q Consensus 130 G~lli~~Gl~~l 141 (270)
+.++.++|+..+
T Consensus 204 ~gl~~v~g~~~l 215 (232)
T COG2836 204 GGLMVVVGLIGL 215 (232)
T ss_pred hHHHHHHHHHHH
Confidence 777777777766
No 42
>COG0730 Predicted permeases [General function prediction only]
Probab=75.53 E-value=57 Score=28.78 Aligned_cols=27 Identities=15% Similarity=0.063 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 024263 238 KFSSWINPMSGALLLGGGLYTFLDRLF 264 (270)
Q Consensus 238 ~~~~~i~~i~G~lli~~Gi~~~~~~~~ 264 (270)
...+.+|++.+.+++..+++++++.+.
T Consensus 230 ~~~~~lr~~~~~~~~~~~~~~~~~~~~ 256 (258)
T COG0730 230 LSPKVLRRLFALVLLAVAIKLLLRGLG 256 (258)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 347899999999999999998877653
No 43
>PF03824 NicO: High-affinity nickel-transport protein; InterPro: IPR011541 High affinity nickel transporters are involved in the incorporation of nickel into H2-uptake hydrogenase [, ] and urease [] enzymes and are essential for the expression of catalytically active hydrogenase and urease. Ion uptake is dependent on proton motive force. HoxN in Ralstonia eutropha (Alcaligenes eutrophus) is thought to be an integral membrane protein with seven transmembrane helices []. The family also includes a cobalt transporter. ; GO: 0046872 metal ion binding, 0030001 metal ion transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=71.86 E-value=66 Score=28.96 Aligned_cols=67 Identities=24% Similarity=0.229 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHH-HHHHHHHHHHHHHHHHhHHH
Q 024263 47 FTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSL-GLATTLALLGVGASFAGKAY 118 (270)
Q Consensus 47 ~~~~~~~f~~Gll~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~l-G~~~sy~~lG~l~~~~G~~~ 118 (270)
.......+..|+..++.||.....-....... +.........+.+.+ |..++.+.+.......+...
T Consensus 176 ~~~~~~~~~~~f~~Gm~p~~~a~~vl~~~~~~-----~~~~~g~~~~~~~~l~g~~i~~~~~~~~~~~~~~~~ 243 (282)
T PF03824_consen 176 PISWILLLGLGFAAGMVPCPGALGVLLFALYL-----GAFWAGRAAVLAMSLGGMAITVALFAGLAVLARLLA 243 (282)
T ss_pred CchHHHHHHHHHHhhccccHHHHHHHHHHHHc-----ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567778889999999998665444433322 112223455667777 77777777766665555443
No 44
>COG1971 Predicted membrane protein [Function unknown]
Probab=69.32 E-value=75 Score=27.47 Aligned_cols=126 Identities=18% Similarity=0.234 Sum_probs=61.7
Q ss_pred HhHHHHHh-hchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCC--hhHHHHHHHHHhhccCCCchHHHH
Q 024263 114 AGKAYGQI-GTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPS--SVQAYLAGLTFALAASPCSTPVLA 190 (270)
Q Consensus 114 ~G~~~~~~-~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~--~~~~fllG~~~gl~~~PC~~p~l~ 190 (270)
.|+.++.. ..+-.|+.+++++++|+.|+-. .+++..+.. ..+ ..+.. +.-...+|+..++=..|-+
T Consensus 57 ~g~~~s~~i~~~~~wigf~lL~~lG~~mI~e---~f~~~~~~~--~~~-~~~~~~~~~~~~~laiatSidal~vG----- 125 (190)
T COG1971 57 IGKFLSTFIAEWAHWIGFVLLIILGLKMIIE---GFKNEEDEF--VDP-AEKHDLNFKELILLAIATSIDALAVG----- 125 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhchhhcch--hcc-cccchhhHHHHHHHHHHHHHHHHHHh-----
Confidence 44555433 2345778999999999999821 121111111 110 01111 3335677776665222111
Q ss_pred HHHHHHhhccChHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 024263 191 TLLGYVATSKDPLIGGTLLLSYTTGY-VAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLD 261 (270)
Q Consensus 191 ~il~~a~~~gs~~~g~~~l~~fglG~-~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~ 261 (270)
...+...-+ ....+-..|. ++-+-.++...++ ++. +-.+++.+.+.|++++..|+..++.
T Consensus 126 --~~~a~lgv~-----i~~~av~iG~~T~il~~~G~~IG~--~~g--~~~g~~ae~lgGiiLI~~G~~iL~~ 186 (190)
T COG1971 126 --VGLAFLGVN-----ILLAAVAIGLITLILSALGAIIGR--KLG--KFLGKYAEILGGIILIGIGVKILLE 186 (190)
T ss_pred --hhHHHhcch-----HHHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 2222233332 2333334443332 222 3456788899999999999987654
No 45
>PF04474 DUF554: Protein of unknown function (DUF554); InterPro: IPR007563 This is a family of uncharacterised prokaryotic proteins. Multiple predicted transmembrane regions suggest that the protein is membrane associated.
Probab=68.54 E-value=83 Score=27.93 Aligned_cols=87 Identities=23% Similarity=0.324 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhccCCCchHH--HHHHHHHHhhccCh-----------HHHHHHHHHHHhhh---HHHHHHHHHH----HH
Q 024263 169 QAYLAGLTFALAASPCSTPV--LATLLGYVATSKDP-----------LIGGTLLLSYTTGY---VAPLLLAASF----AG 228 (270)
Q Consensus 169 ~~fllG~~~gl~~~PC~~p~--l~~il~~a~~~gs~-----------~~g~~~l~~fglG~---~lPlll~~~~----~~ 228 (270)
+.|.=|+..+. ..-|.+|+ +.++- ...++|+ ......-..||.|. ++|.++.=.. ++
T Consensus 96 ~~f~~gFvtas-llfCvG~m~I~Gsi~--~Gl~gd~siL~~KsiLDg~taiifaaslG~gV~~saipv~iyQg~l~llA~ 172 (226)
T PF04474_consen 96 SSFAEGFVTAS-LLFCVGAMAILGSIQ--DGLTGDPSILLTKSILDGFTAIIFAASLGIGVAFSAIPVFIYQGSLTLLAG 172 (226)
T ss_pred ccHHHHHHHHH-HHHHcchhHHHhHHH--hHhcCChHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554 35688875 33332 2333333 33345555777776 3565543221 11
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024263 229 ALQSLLSFRKFSSWINPMSGALLLGGGLYTF 259 (270)
Q Consensus 229 ~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~ 259 (270)
.++.+. .+..-..+.-+.|++++..|+-++
T Consensus 173 ~l~~~l-s~~~i~~~savGGili~~iGlnll 202 (226)
T PF04474_consen 173 FLAPLL-SPAMINEISAVGGILILAIGLNLL 202 (226)
T ss_pred HHHhhC-CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 222111 123345566778999999998765
No 46
>PRK10621 hypothetical protein; Provisional
Probab=64.20 E-value=1.1e+02 Score=27.35 Aligned_cols=27 Identities=19% Similarity=-0.061 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhc
Q 024263 238 KFSSWINPMSGALLLGGGLYTFLDRLF 264 (270)
Q Consensus 238 ~~~~~i~~i~G~lli~~Gi~~~~~~~~ 264 (270)
-..+++|++...+++..+++++++.+.
T Consensus 230 ~~~~~lr~~~~~ll~~~~i~~~~~~~~ 256 (266)
T PRK10621 230 KGQKLIRPMIVIVSAVMSAKLLYDSHG 256 (266)
T ss_pred cCchHhHHHHHHHHHHHHHHHHHHHHh
Confidence 346789999999999999998877766
No 47
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=58.30 E-value=1.4e+02 Score=26.83 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=39.8
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHH
Q 024263 172 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 226 (270)
Q Consensus 172 llG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~ 226 (270)
-+|....+..+-|. ++...+.......++......-+.-|+|+.+-+++++..
T Consensus 121 aLGifLPLIttNCa--VLG~al~~~~~~~~~~~S~~~Glg~GlGftLALvl~a~i 173 (244)
T PRK01061 121 SLGIFLPLIAVNCA--ILGGVLFGITRNYPFIPMMIFSLGAGCGWWLAIVLFATI 173 (244)
T ss_pred HHhcchhHHHHHHH--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57777788788895 777766666666777888888888888887777776553
No 48
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=54.31 E-value=2.3e+02 Score=28.12 Aligned_cols=28 Identities=32% Similarity=0.345 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 024263 91 GDSIAFSLGLATTLALLGVGASFAGKAY 118 (270)
Q Consensus 91 ~~~l~f~lG~~~sy~~lG~l~~~~G~~~ 118 (270)
.+...+++.+++.-.+-|.++..+|...
T Consensus 143 l~s~~~niar~iGPalgG~Lva~~G~~~ 170 (524)
T PF05977_consen 143 LNSISFNIARIIGPALGGILVAFFGAAA 170 (524)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 4677888888888888888887777543
No 49
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=53.27 E-value=1.6e+02 Score=29.65 Aligned_cols=132 Identities=14% Similarity=0.019 Sum_probs=60.9
Q ss_pred hHHHHHHHHHHHHHHHHHHH-hhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhhccCh
Q 024263 124 GLPLAASGLAIVMGLNLLEI-IELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP 202 (270)
Q Consensus 124 ~~~~~~G~lli~~Gl~~lg~-~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~ 202 (270)
++..+.++.++++|..+.+- ++.-.. .+.++... +..+++.-+++.|+......=+-++..+..+-..++.--+.
T Consensus 7 ~l~l~g~v~l~L~g~~~m~~Gv~~~~G---~~lr~~L~-~~t~np~~gvl~Gi~~T~llQSStatt~lt~gfV~aGl~sl 82 (533)
T COG1283 7 LLNLLGAVALLLFGIKMVGDGVQRAAG---DRLRKILA-RFTSNPILGVLAGIVATALLQSSTATTVLTIGFVAAGLLSL 82 (533)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhH---HHHHHHHH-HhcCCcHHHHHHHHHHHHHHHhcchHHHHHHHHHhccccch
Confidence 34566677788999999832 111010 01111111 23456777888888776543333333332222222222233
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH-----------HHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024263 203 LIGGTLLLSYTTGYVAPLLLAASFAGAL-----------QSLLSFRKFSSWINPMSGALLLGGGLYTF 259 (270)
Q Consensus 203 ~~g~~~l~~fglG~~lPlll~~~~~~~~-----------~~~~~~~~~~~~i~~i~G~lli~~Gi~~~ 259 (270)
-.+...++.=++||++--.+++.-.++. -.+++..+++..-+-+.|+-++.+|+.++
T Consensus 83 ~~Ai~vilGANIGTt~Ta~iva~~l~~~~~~ll~~G~~~~~f~~~~~~~~lG~~~~GiGl~f~sl~l~ 150 (533)
T COG1283 83 KQAIGVILGANIGTTVTAWIVALDLSWLSPPLLAIGAILFFFGKSSKLRQLGRVLFGIGLIFLSLELL 150 (533)
T ss_pred hhhhhheeccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcchHHHHhcchhHHHHHHHHHHHHHH
Confidence 3444444444455543333322211111 11122234444555667777777776655
No 50
>COG1283 NptA Na+/phosphate symporter [Inorganic ion transport and metabolism]
Probab=52.32 E-value=2.6e+02 Score=28.10 Aligned_cols=129 Identities=17% Similarity=0.042 Sum_probs=68.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHHHhhccCCCchHHHHHHHHHHh-hccC
Q 024263 123 TGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVA-TSKD 201 (270)
Q Consensus 123 ~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~-~~gs 201 (270)
+.-+.+.|+-++.+++.+++-.-.++-.. +.+..... .-.+.+..++.+|..++...-+-.+.+.. +...+. ..-|
T Consensus 132 ~lG~~~~GiGl~f~sl~l~~~a~~pl~~s-~~~~~~i~-~l~~~~~~~l~~g~~lt~l~~SS~A~i~i-~~~l~~~glis 208 (533)
T COG1283 132 QLGRVLFGIGLIFLSLELLGQATEPLRQS-PAFSDFIA-KLSDDPIVALLIGALLTALIQSSLAAIGI-LLSLTSQGLIS 208 (533)
T ss_pred hcchhHHHHHHHHHHHHHHHHhhhhhhhc-hhHHHHHH-HhccccHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCcccc
Confidence 33466777778888888875432221110 00101111 11244556666777777644433322211 111111 1237
Q ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 024263 202 PLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLY 257 (270)
Q Consensus 202 ~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~ 257 (270)
+..+....+.=++|+++|.++.....+...| .....+++-+..|+++..-=++
T Consensus 209 ~~~~~alvLGaNlGt~i~a~laa~~~~~~ar---r~a~~~ll~~~iG~li~lp~~~ 261 (533)
T COG1283 209 LEAALALVLGANLGTTITAVLAALGASAAAR---RVALGNLLFNLIGVLIFLPVIH 261 (533)
T ss_pred hhHHHHHHHHHhhhchhHHHHHhcccchhHH---HHHHHHHHHHHHhHHHHHHHHH
Confidence 7788888889999999999887765443311 1234566667777555544333
No 51
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=47.46 E-value=1.3e+02 Score=25.11 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 024263 89 IIGDSIAFSLGLATTLALL 107 (270)
Q Consensus 89 ~l~~~l~f~lG~~~sy~~l 107 (270)
.+.......+|..+.-..+
T Consensus 5 ~i~~i~~iilgilli~~gI 23 (191)
T PF04156_consen 5 RIISIILIILGILLIASGI 23 (191)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3555667777777433333
No 52
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=47.02 E-value=94 Score=26.36 Aligned_cols=54 Identities=20% Similarity=0.293 Sum_probs=45.0
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHH
Q 024263 171 YLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 226 (270)
Q Consensus 171 fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~ 226 (270)
=.+|+..-+.-+.|+ ++..++...-..++..+...+-+.=++|+++.+++.+..
T Consensus 101 r~LGIfLPLITTNCa--VLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~i 154 (193)
T COG4657 101 RLLGIFLPLITTNCA--VLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAI 154 (193)
T ss_pred HHHHHhhhhHhhchH--HHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHH
Confidence 378999999999996 888888777778899999999888899998888776543
No 53
>PF03741 TerC: Integral membrane protein TerC family; InterPro: IPR005496 A family containining a number of integral membrane proteins is named after TerC protein. TerC has been implicated in resistance to tellurium, and may be involved in efflux of tellurium ions. The tellurite-resistant Escherichia coli strain KL53 was found during testing of a group of clinical isolates for antibiotic and heavy metal ion resistance []. The determinant of the strain's tellurite resistance was located on a large conjugative plasmid, and analyses showed the genes terB, terC, terD and terE were essential for conservation of this resistance. Members of this family contain a number of conserved aspartates which may be involved in metal ion binding.; GO: 0016021 integral to membrane
Probab=44.89 E-value=2e+02 Score=24.51 Aligned_cols=48 Identities=15% Similarity=0.025 Sum_probs=28.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 024263 208 LLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFL 260 (270)
Q Consensus 208 ~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~ 260 (270)
.....|...++|.+..+. ..+. +.-+..++++.....++...|+-+++
T Consensus 135 ~iv~~g~i~si~~m~~~~--~~~~---~~l~~~p~l~~~~~~~L~~ig~~li~ 182 (183)
T PF03741_consen 135 FIVITGNIISILLMRFLS--FLLA---KLLERFPYLKYLAAAILGFIGVKLIL 182 (183)
T ss_pred HHHHHHHHHHHHHHHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344445555566555432 1111 22345588999988888888877653
No 54
>PRK12456 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=41.48 E-value=61 Score=28.19 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=49.6
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Q 024263 172 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALL 251 (270)
Q Consensus 172 llG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~ll 251 (270)
.+|....+..+-|. ++...+..+..+.++......-+.-|+|+.+-+++++..-.++ + ..+. +.--|-.++.+
T Consensus 109 ~LGiflpLI~tNCa--VLG~al~~~~~~~~~~~s~~~glg~GlGftlal~l~a~iRE~l---~-~~~i-P~~~~G~pI~l 181 (199)
T PRK12456 109 TLGAFLPLLTIHCA--IFGATIFMVQREYTFTESFVYGTGCGLGWMLAIISMAGLREKM---K-YSNI-PKGLQGLGIVF 181 (199)
T ss_pred HHhhhHhHHHHHHH--HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---c-cCCC-CcccCCccHHH
Confidence 57777788788895 7776665555456888888888888888887777766532222 1 1111 11223355666
Q ss_pred HHHHHH
Q 024263 252 LGGGLY 257 (270)
Q Consensus 252 i~~Gi~ 257 (270)
+..|+.
T Consensus 182 i~aglm 187 (199)
T PRK12456 182 MTAGLM 187 (199)
T ss_pred HHHHHH
Confidence 666654
No 55
>COG1279 Lysine efflux permease [General function prediction only]
Probab=36.60 E-value=2.9e+02 Score=24.12 Aligned_cols=51 Identities=20% Similarity=0.093 Sum_probs=37.0
Q ss_pred HHHhhhH----HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 024263 211 SYTTGYV----APLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGLYTFLD 261 (270)
Q Consensus 211 ~fglG~~----lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi~~~~~ 261 (270)
.|++|+. +-++.++...++++++.+.++..+.++++.|++|...++++..+
T Consensus 147 ~F~~Ga~~aS~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~vM~~ia~~L~~~ 201 (202)
T COG1279 147 FFALGAISASFLWFFLLALGARWLSPLLANPKAWRIINLVVAVVMWALAVKLAVQ 201 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHchhccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4455542 44555665666666666678888999999999999999987643
No 56
>PRK13755 putative mercury transport protein MerC; Provisional
Probab=36.21 E-value=2.1e+02 Score=23.13 Aligned_cols=45 Identities=24% Similarity=0.448 Sum_probs=26.7
Q ss_pred hHHHHHHH-HHHHHHHHHHHhhhhhhHHHHHH---HHHHHHHHHHHHHHhhhc
Q 024263 216 YVAPLLLA-ASFAGALQSLLSFRKFSSWINPM---SGALLLGGGLYTFLDRLF 264 (270)
Q Consensus 216 ~~lPlll~-~~~~~~~~~~~~~~~~~~~i~~i---~G~lli~~Gi~~~~~~~~ 264 (270)
+-+|++.. +...+.+ . +-++|+|.|.. .|=.++..++|.++++++
T Consensus 52 ~LlPlFA~iALlanal-g---W~sHRQW~Rs~lG~iGP~lvl~~~~~~~~~~w 100 (139)
T PRK13755 52 TLLPLFAAIALLANAL-G---WFSHRQWLRSALGMIGPALVLAAVFLLLGNGW 100 (139)
T ss_pred HHHHHHHHHHHHHHHH-H---HHHHHHHHHHhhcchhHHHHHHHHHHHHhhhH
Confidence 35788763 3333333 2 23455666654 566788888888777654
No 57
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=35.79 E-value=4.9e+02 Score=26.53 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=48.2
Q ss_pred cccchhhhHHHHHHhhhhhHHHHHHhhhccchHHHHHHHHHHHHhhc--CcCCccchHHHHHHHHhhcCCCcchhHHHHH
Q 024263 15 ADGSLGDMFGGFLYSAGQQANEAVLGQLSALSFTSLAVIFGAGLVTS--LSPCTLSVLPLTLGYIGAFGSGKSRAQIIGD 92 (270)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~f~~Gll~~--lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~ 92 (270)
.|.|.+|-++..- ++++.+|..+....+...+....++...+... ...+.-.++|..-..+. + .++ ..+.
T Consensus 12 ~~~~~~~~~~~~a--~~~~~~~~p~g~~~s~~~i~~~~~~~~~~~~~~~~~~~~a~~l~~I~~diG---~-~~~--~~w~ 83 (599)
T PF06609_consen 12 LASQPDDRIRAEA--LGTEADELPDGYYRSPRFIASFAAFSLAVIAAYFVLVLPASILPYINADIG---G-SDN--WSWF 83 (599)
T ss_pred CCCCcchhHHHHH--hcCchhhCCCCceeCHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHhcC---C-Ccc--chHH
Confidence 3556667777665 56666776555555555555555555555432 11222223332222221 1 222 2234
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 024263 93 SIAFSLGLATTLALLGVGASFAGK 116 (270)
Q Consensus 93 ~l~f~lG~~~sy~~lG~l~~~~G~ 116 (270)
...++++-..++.+.|-+.=.+|+
T Consensus 84 ~~~~~l~~av~~~~~G~LSDlfGR 107 (599)
T PF06609_consen 84 STAWTLASAVSFPFVGRLSDLFGR 107 (599)
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcc
Confidence 556777777777776666555554
No 58
>PF08611 DUF1774: Fungal protein of unknown function (DUF1774); InterPro: IPR013920 This is a fungal protein of unknown function.
Probab=35.61 E-value=2e+02 Score=22.09 Aligned_cols=44 Identities=9% Similarity=0.116 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHHHHHH
Q 024263 96 FSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLN 139 (270)
Q Consensus 96 f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~~Gl~ 139 (270)
|+.|..++|..++..++.+-...-..|..+..++..++.+..+.
T Consensus 25 ~~~GfslS~L~~slgv~Q~~~kvialQWIFAFvI~avlfv~sl~ 68 (97)
T PF08611_consen 25 YAMGFSLSYLTASLGVGQFFIKVIALQWIFAFVIAAVLFVLSLV 68 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999988877444333334444444443444444443
No 59
>PRK13747 putative mercury resistance protein; Provisional
Probab=34.67 E-value=1.2e+02 Score=22.18 Aligned_cols=30 Identities=30% Similarity=0.577 Sum_probs=20.4
Q ss_pred CChhHHHHHHHHHhhccCCCchHHHHHHHHH
Q 024263 165 PSSVQAYLAGLTFALAASPCSTPVLATLLGY 195 (270)
Q Consensus 165 ~~~~~~fllG~~~gl~~~PC~~p~l~~il~~ 195 (270)
++....++-|.+- +..|||--|++..+++.
T Consensus 12 ~~~~~~YlWg~lA-vLTCPCHLpiLa~lLAG 41 (78)
T PRK13747 12 HKPITGYLWGALA-VLTCPCHLPILAAVLAG 41 (78)
T ss_pred cCcchhhhhHHHH-HhcCcchHHHHHHHHcc
Confidence 3445566666644 55799999988877753
No 60
>PF01810 LysE: LysE type translocator; InterPro: IPR001123 Lysine exporter protein is involved in the efflux of excess L-lysine as a control for intracellular levels of L-lysine. A number of proteins belong to this family. These include the chemotactic transduction protein from Pseudomonas aeruginosa, the threonine efflux protein and a number of uncharacterised proteins from a variety of sources.; GO: 0006865 amino acid transport, 0016020 membrane
Probab=34.14 E-value=2.7e+02 Score=23.00 Aligned_cols=87 Identities=17% Similarity=0.076 Sum_probs=45.4
Q ss_pred HHHHHHhh-cCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh-hchHHHHHH
Q 024263 53 IFGAGLVT-SLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLATTLALLGVGASFAGKAYGQI-GTGLPLAAS 130 (270)
Q Consensus 53 ~f~~Gll~-~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~~-~~~~~~~~G 130 (270)
.|..|+.. ..||=.++..-.+.+..... +.+......-......+-...+..++.......+.+... .+++..+.|
T Consensus 100 ~f~~g~~~~~~NPk~il~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~i~~~~g 177 (191)
T PF01810_consen 100 SFLTGFLLNLLNPKAILFWLAVFPQFISP--EYSSTQFLVFILGIFLGSLLWFLLLALLGSRLRRKFSSRRIRWINRISG 177 (191)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhhhcccCc--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 44555544 45787755443333322221 122222222333444454555555555555555544321 236788999
Q ss_pred HHHHHHHHHHH
Q 024263 131 GLAIVMGLNLL 141 (270)
Q Consensus 131 ~lli~~Gl~~l 141 (270)
.+++.+|+.++
T Consensus 178 ~~li~~av~l~ 188 (191)
T PF01810_consen 178 LLLIGFAVYLL 188 (191)
T ss_pred HHHHHHHHHHH
Confidence 99999998875
No 61
>PRK05151 electron transport complex protein RsxA; Provisional
Probab=33.12 E-value=3.2e+02 Score=23.61 Aligned_cols=53 Identities=23% Similarity=0.334 Sum_probs=41.1
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHH
Q 024263 172 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 226 (270)
Q Consensus 172 llG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~ 226 (270)
.+|....+..+-|. ++...+..+....++.+....-+.-|+|+.+-+++++..
T Consensus 102 ~LGiflpLI~tNCa--VLG~al~~~~~~~~~~~s~~~glg~GlGf~lal~lla~i 154 (193)
T PRK05151 102 LLGIFLPLITTNCA--VLGVALLNINLGHNFLQSALYGFGAAVGFSLVLVLFAAI 154 (193)
T ss_pred HHhhhhhHHHHHHH--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777778778895 777777766667888888888888888888777776653
No 62
>COG1811 Uncharacterized membrane protein, possible Na+ channel or pump [General function prediction only]
Probab=32.31 E-value=3.6e+02 Score=23.92 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhh---HHHHHHHHHHHHHHH-HHHh--hhhhhHHHHHHHHHHHHHHHHHHHHhh
Q 024263 205 GGTLLLSYTTGY---VAPLLLAASFAGALQ-SLLS--FRKFSSWINPMSGALLLGGGLYTFLDR 262 (270)
Q Consensus 205 g~~~l~~fglG~---~lPlll~~~~~~~~~-~~~~--~~~~~~~i~~i~G~lli~~Gi~~~~~~ 262 (270)
...+-..||.|. ++|.++.=....... .... -.+.-.-+.-..|++++..|+-++-.|
T Consensus 139 Ai~la~tlGigV~~sai~~~l~qg~ial~A~~i~~l~t~~~~~~f~a~GGllila~Gl~il~lk 202 (228)
T COG1811 139 AIVLASTLGIGVSFSAIPVLLIQGLIALFAAQILPLTTPDLMADFTAVGGLLILAIGLRILGLK 202 (228)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhccchhhHhhhhHHhcce
Confidence 344555677776 367665332222211 1111 123334445567888888888766443
No 63
>PF05052 MerE: MerE protein; InterPro: IPR007746 The prokaryotic MerE (or URF-1) protein is part of the mercury resistance operon often located on plasmids or transposons [, ]. It has been suggested that MerE is a broad mercury transporter mediating transport across the bacterial membrane [].
Probab=32.05 E-value=1.2e+02 Score=22.05 Aligned_cols=27 Identities=41% Similarity=0.787 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHhhccCCCchHHHHHHHH
Q 024263 167 SVQAYLAGLTFALAASPCSTPVLATLLG 194 (270)
Q Consensus 167 ~~~~fllG~~~gl~~~PC~~p~l~~il~ 194 (270)
...+++-|...-+ .|||--|++.++++
T Consensus 14 ~i~gy~Wg~lA~l-TCPCHLpil~~vLa 40 (75)
T PF05052_consen 14 PITGYLWGLLALL-TCPCHLPILAPVLA 40 (75)
T ss_pred cchhhhhHHHHHh-hCcchHHHHHHHHc
Confidence 3455666665544 69999998887664
No 64
>PRK02830 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=31.22 E-value=3.6e+02 Score=23.53 Aligned_cols=53 Identities=13% Similarity=0.169 Sum_probs=40.1
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHH
Q 024263 172 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 226 (270)
Q Consensus 172 llG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~ 226 (270)
-+|....+..+-|. ++...+..+..+.++.+....-+..|+|+.+-+++++..
T Consensus 112 ~LGiflpLI~~NCa--VLG~al~~a~~~~~~~~s~~~glg~GlGf~lal~l~a~i 164 (202)
T PRK02830 112 ALGIFLPLITVNCA--IFGGVLFMVQRDYNFGESVVYGFGSGIGWALAIVALAGI 164 (202)
T ss_pred HHhhhhhHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777778895 777777766655588888888888888888777776653
No 65
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=30.93 E-value=3.6e+02 Score=23.48 Aligned_cols=53 Identities=13% Similarity=0.172 Sum_probs=40.7
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHH
Q 024263 172 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 226 (270)
Q Consensus 172 llG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~ 226 (270)
-+|....+..+-|. ++...+..+....++.+....-+.-|+|+.+-+++++..
T Consensus 111 ~LGiflpLI~tNCa--VLG~a~~~a~~~~~~~~S~~~glg~GlGf~lal~l~a~i 163 (200)
T TIGR01940 111 ALGIFLPLITVNCA--IFGGVLFMVQREYNFGESVVYGFGSGLGWMLAIVALAGI 163 (200)
T ss_pred HHhhhHhHHHHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778778895 777777766655588888888888889988887777653
No 66
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters. In the kidney these proteins may be involved in actively transporting phosphate into cells via Na+ cotransport in the renal brush border membrane [].; GO: 0015321 sodium-dependent phosphate transmembrane transporter activity, 0044341 sodium-dependent phosphate transport, 0016020 membrane
Probab=30.63 E-value=2.9e+02 Score=22.31 Aligned_cols=60 Identities=22% Similarity=0.217 Sum_probs=37.7
Q ss_pred CCChhHHHHHHHHHhhccCCCchHHHHHHHHHHhh-ccChHHHHHHHHHHHhhhHHHHHHHH
Q 024263 164 FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVAT-SKDPLIGGTLLLSYTTGYVAPLLLAA 224 (270)
Q Consensus 164 ~~~~~~~fllG~~~gl~~~PC~~p~l~~il~~a~~-~gs~~~g~~~l~~fglG~~lPlll~~ 224 (270)
.++++.+++.|...+...-+-+ ....-+...+.+ .-+...+..++..=++|++++-.+.+
T Consensus 29 ~~~~~~~~l~G~~~T~l~QSSs-a~~~i~v~l~~~g~l~~~~al~~ilGaNiGtt~~~~l~a 89 (142)
T PF02690_consen 29 TSNPLLAFLLGALLTALVQSSS-AVTLIVVSLVAAGVLSLEQALAIILGANIGTTITALLAA 89 (142)
T ss_pred cCCCHHHHHHHHHHHHHhcchH-HHHHHHHHHHHhcccCHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3566888999999887544333 332322332222 23666777777778899987777666
No 67
>TIGR02840 spore_YtaF putative sporulation protein YtaF. This protein family was identified, at the time of the publication of the Carboxydothermus hydrogenoformans genome, as having a phylogenetic profile that exactly matches the subset of the Firmicutes capable of forming endospores. The species include Bacillus anthracis, Clostridium tetani, Thermoanaerobacter tengcongensis, Geobacillus kaustophilus, etc. This protein, previously named YtaF, is therefore a putative sporulation protein.
Probab=29.99 E-value=3.6e+02 Score=23.24 Aligned_cols=36 Identities=8% Similarity=0.154 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhHHHHHh-hc-hHHHHHHHHHHHHHHHHH
Q 024263 103 TLALLGVGASFAGKAYGQI-GT-GLPLAASGLAIVMGLNLL 141 (270)
Q Consensus 103 sy~~lG~l~~~~G~~~~~~-~~-~~~~~~G~lli~~Gl~~l 141 (270)
..+.+|..+| +.+..+ .+ +-.++.+.+++.+|+.|+
T Consensus 42 ~~~~lg~~~G---~~~~~~i~~~~~~~ig~~iLi~iG~~mi 79 (206)
T TIGR02840 42 LFIFISMLLG---KFLAKFLPPKVTEILGAFILIAIGIWII 79 (206)
T ss_pred HHHHHHHHHH---HHHHHHhchhhHHHHHHHHHHHHHHHHH
Confidence 4444554444 544432 23 457888899999999998
No 68
>COG1279 Lysine efflux permease [General function prediction only]
Probab=28.75 E-value=3.8e+02 Score=23.39 Aligned_cols=76 Identities=21% Similarity=0.243 Sum_probs=42.0
Q ss_pred hhcCcCCccchHHHHHHHHhhcCCCcchhHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHH--hhchHHHHHHHH
Q 024263 59 VTSLSPCTLSVLPLTLGYIGAFGSGKSRAQIIGDSIAFSLGLAT----TLALLGVGASFAGKAYGQ--IGTGLPLAASGL 132 (270)
Q Consensus 59 l~~lsPC~l~~~p~~~~~~~~~~~~~~r~~~l~~~l~f~lG~~~----sy~~lG~l~~~~G~~~~~--~~~~~~~~~G~l 132 (270)
+|.+||.+.-=.-.+++....+-++++| ..|.+|-+. =|..+|.....+...+.. ..+++..+.+++
T Consensus 118 vT~LNPhvyLDtvvliGs~~~~~~~~~k-------~~F~~Ga~~aS~~WF~~L~~~a~~l~~~~~~pk~~riin~vva~v 190 (202)
T COG1279 118 VTLLNPHVYLDTVVLIGSLAAQLSDEAK-------WFFALGAISASFLWFFLLALGARWLSPLLANPKAWRIINLVVAVV 190 (202)
T ss_pred HHHhCchhhhhhHhhhhhhhhhcCcchh-------hHHHHHHHHHHHHHHHHHHHHHHHHchhccCcHHHHHHHHHHHHH
Confidence 4788999875444444544433222222 256666553 344455444444444321 234567778888
Q ss_pred HHHHHHHHH
Q 024263 133 AIVMGLNLL 141 (270)
Q Consensus 133 li~~Gl~~l 141 (270)
|...++.+.
T Consensus 191 M~~ia~~L~ 199 (202)
T COG1279 191 MWALAVKLA 199 (202)
T ss_pred HHHHHHHHh
Confidence 888887664
No 69
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=26.79 E-value=4.1e+02 Score=22.87 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=41.1
Q ss_pred HHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHH
Q 024263 172 LAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASF 226 (270)
Q Consensus 172 llG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~ 226 (270)
-+|....+..+-|. ++...+..+..+.++.+....-+..|+|+.+-+++++..
T Consensus 101 ~LGiflpLI~tNCa--VLG~a~~~~~~~~~~~~s~~~glg~GlGf~lal~l~a~i 153 (190)
T TIGR01943 101 ALGIFLPLITTNCA--VLGVALLNIQLDYNLLQSIVYAVGAGLGFTLAMVIFAGI 153 (190)
T ss_pred HHhhhhhHHHHHHH--HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777777778885 777777766677888888888888889988887777653
No 70
>COG3376 HoxN High-affinity nickel permease [Inorganic ion transport and metabolism]
Probab=26.43 E-value=1.8e+02 Score=27.17 Aligned_cols=53 Identities=32% Similarity=0.453 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-------hhchH-HHHHHHHHHHHHHHHH
Q 024263 89 IIGDSIAFSLGLATTLALLGVGASFAGKAYGQ-------IGTGL-PLAASGLAIVMGLNLL 141 (270)
Q Consensus 89 ~l~~~l~f~lG~~~sy~~lG~l~~~~G~~~~~-------~~~~~-~~~~G~lli~~Gl~~l 141 (270)
....+..|++|=..+=.++-......-+.+.+ ....+ ..+.|.++.++|+.-+
T Consensus 86 p~~VG~fFSlGHStVViL~~l~~~~~~~~~~n~~~~l~~iGglIgTlVSg~FLllig~lNl 146 (342)
T COG3376 86 PLGVGFFFSLGHSTVVILLSLALAAASKAFKNRLPMLEEIGGLIGTLVSGFFLLLIGLLNL 146 (342)
T ss_pred CceeeEEEecCchHHHHHHHHHHHHHHHHHHhccHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34556778999886655555555444444432 12222 5567777777776544
No 71
>COG2119 Predicted membrane protein [Function unknown]
Probab=26.01 E-value=4.3e+02 Score=22.82 Aligned_cols=146 Identities=16% Similarity=0.153 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHh--hchHHHHHHHHHHHHHHHHHHHhhhhcccccccCchhhhhcCCCChhHHHHHHHH
Q 024263 99 GLATTLALLGVGASFAGKAYGQI--GTGLPLAASGLAIVMGLNLLEIIELQLPSFFDNFDPRAAAANFPSSVQAYLAGLT 176 (270)
Q Consensus 99 G~~~sy~~lG~l~~~~G~~~~~~--~~~~~~~~G~lli~~Gl~~lg~~~~~~p~~~~~~~~~~~~~~~~~~~~~fllG~~ 176 (270)
|....-...-++.+.+|+..... .++..+..+...+++|..++ .|....+.+.. ...+++-+...|.+ ++
T Consensus 39 g~~~a~~~m~~la~~vG~~~~~~~~~~~~~~~~~~~Flafav~~l------~edk~~~~e~~-~~~~~~~f~~tfi~-~F 110 (190)
T COG2119 39 GIAIALFAMHALAVLVGHAAASLLPERPLAWASGVLFLAFAVWML------IEDKEDDEEAQ-AASPRGVFVTTFIT-FF 110 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHh------ccccccccccc-ccccccHHHHHHHH-HH
Confidence 44444334444455666765433 35788999999999999887 33221111000 00111112222222 11
Q ss_pred HhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 024263 177 FALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGALLLGGGL 256 (270)
Q Consensus 177 ~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~lli~~Gi 256 (270)
.+ ..-= =.-.+-..+++..+++. +. ...=.+|+.+-=.+.....+... + |-..+.++++.|+++..+|+
T Consensus 111 la--E~GD--KTQiATIaLaA~~~~~~-~V--~~Gt~lg~~l~s~laVl~G~~ia--~--ki~~r~l~~~aallFl~fal 179 (190)
T COG2119 111 LA--ELGD--KTQIATIALAADYHSPW-AV--FAGTTLGMILASVLAVLLGKLIA--G--KLPERLLRFIAALLFLIFAL 179 (190)
T ss_pred HH--Hhcc--HHHHHHHHHhhcCCCce-ee--ehhhHHHHHHHHHHHHHHHHHHH--c--cCCHHHHHHHHHHHHHHHHH
Confidence 11 1111 11123344455555531 22 12223344222222222222221 1 22357799999999999998
Q ss_pred HHHHhhh
Q 024263 257 YTFLDRL 263 (270)
Q Consensus 257 ~~~~~~~ 263 (270)
+.+++..
T Consensus 180 ~~~~~~~ 186 (190)
T COG2119 180 VLLWQVF 186 (190)
T ss_pred HHHHHHH
Confidence 8877654
No 72
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=24.82 E-value=3.5e+02 Score=21.52 Aligned_cols=40 Identities=15% Similarity=0.124 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHHHHHHHHHHHHHHH
Q 024263 94 IAFSLGLATTLALLGVGASFAGKAYGQIGTGLPLAASGLAIVMGLNLL 141 (270)
Q Consensus 94 l~f~lG~~~sy~~lG~l~~~~G~~~~~~~~~~~~~~G~lli~~Gl~~l 141 (270)
+....||.+.|..+|.+.-.. .++.++.|.+++..|+..+
T Consensus 64 L~~~~GRGlfyif~G~l~~~~--------~~~~~i~g~~~~~~G~~~i 103 (136)
T PF08507_consen 64 LYSYIGRGLFYIFLGTLCLGQ--------SILSIIIGLLLFLVGVIYI 103 (136)
T ss_pred HHhHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHHHHHHH
Confidence 345789999999998775422 4568888888888888776
No 73
>PF14007 YtpI: YtpI-like protein
Probab=24.34 E-value=2.3e+02 Score=21.42 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=19.3
Q ss_pred HHHHHhhchHHHHHHHHHHHHHHHHH
Q 024263 116 KAYGQIGTGLPLAASGLAIVMGLNLL 141 (270)
Q Consensus 116 ~~~~~~~~~~~~~~G~lli~~Gl~~l 141 (270)
|.+. .+++++.+.|.+++++|+.-+
T Consensus 50 Q~~~-~~st~~~iV~~ifl~lG~~n~ 74 (89)
T PF14007_consen 50 QMFL-FGSTVRLIVGAIFLVLGLFNL 74 (89)
T ss_pred HHHH-cccHHHHHHHHHHHHHhHHHH
Confidence 4443 556789999999999998876
No 74
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=23.68 E-value=2.5e+02 Score=19.24 Aligned_cols=33 Identities=9% Similarity=0.058 Sum_probs=21.1
Q ss_pred HHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHH
Q 024263 227 AGALQSL-LSFRKFSSWINPMSGALLLGGGLYTF 259 (270)
Q Consensus 227 ~~~~~~~-~~~~~~~~~i~~i~G~lli~~Gi~~~ 259 (270)
.++.|+. .+..+..+.-.|..|...++.|+..+
T Consensus 20 P~~~r~~l~~l~~~p~~~lR~~Gl~~~~~Gl~ll 53 (57)
T PF09838_consen 20 PERWRRMLRQLAQLPDRQLRRIGLVSMVIGLVLL 53 (57)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 3444432 34555566667788888888887654
No 75
>COG3771 Predicted membrane protein [Function unknown]
Probab=23.11 E-value=3.4e+02 Score=20.57 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=22.0
Q ss_pred ccChHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 024263 199 SKDPLIGGTLLLSYTTGYVAPLLLAASFAGAL 230 (270)
Q Consensus 199 ~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~ 230 (270)
++..-...++...|++|.++-.++-+.+--+.
T Consensus 36 qgef~LSTLla~lF~~G~~lgwli~g~fy~k~ 67 (97)
T COG3771 36 QGEFRLSTLLATLFAAGFALGWLICGLFYLKV 67 (97)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566777788999888777777654443
No 76
>PF01925 TauE: Sulfite exporter TauE/SafE; InterPro: IPR002781 This family is found in integral membrane proteins of prokaryotes which are uncharacterised.; GO: 0016021 integral to membrane
Probab=22.88 E-value=4.8e+02 Score=22.20 Aligned_cols=19 Identities=26% Similarity=0.095 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 024263 239 FSSWINPMSGALLLGGGLY 257 (270)
Q Consensus 239 ~~~~i~~i~G~lli~~Gi~ 257 (270)
.++++|++...+++..|+.
T Consensus 221 ~~~~~~~~~~~ll~~~~~~ 239 (240)
T PF01925_consen 221 PQKVFRRIFLILLLLSGLK 239 (240)
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 3678999999999988875
No 77
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=21.74 E-value=3.3e+02 Score=19.92 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 024263 241 SWINPMSGALLLGGGLYTFLDRLF 264 (270)
Q Consensus 241 ~~i~~i~G~lli~~Gi~~~~~~~~ 264 (270)
-..-.+.|+.|++.|-|-+++.|.
T Consensus 40 ~~laeiiav~lVl~GgYRilda~i 63 (80)
T PRK13727 40 FFLAELIAAILVLFGAYRVLDAWI 63 (80)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 335578999999999999998875
No 78
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=20.66 E-value=3.5e+02 Score=19.77 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhc
Q 024263 241 SWINPMSGALLLGGGLYTFLDRLF 264 (270)
Q Consensus 241 ~~i~~i~G~lli~~Gi~~~~~~~~ 264 (270)
-..-.+.|+.|++.|-|-+++.|.
T Consensus 40 ~~laeliav~lVl~G~YRiLdawi 63 (80)
T TIGR02741 40 FFLAELIAVILVLWGAYRVLDAWI 63 (80)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 334577999999999999988875
Done!