Query 024263
Match_columns 270
No_of_seqs 117 out of 1291
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 05:13:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 16.7 5E+02 0.017 22.2 14.7 18 201-218 286-303 (451)
2 1v54_L VIIIA, cytochrome C oxi 13.9 1.7E+02 0.0058 18.4 3.1 19 205-223 22-40 (47)
3 2y69_L Cytochrome C oxidase su 10.9 2.2E+02 0.0076 19.0 3.1 20 204-223 37-56 (63)
4 1sg7_A Putative cation transpo 5.0 1.4E+02 0.0049 21.8 -0.1 10 60-69 14-23 (96)
5 2y9u_A Tumor protein 63; apopt 4.4 3.4E+02 0.012 18.2 1.5 23 15-39 3-25 (69)
6 2i68_A Protein EMRE; transmemb 4.1 1.2E+03 0.042 17.4 5.0 17 243-259 85-101 (137)
7 2jo1_A Phospholemman; FXYD1, N 3.9 7.6E+02 0.026 16.9 2.9 18 245-262 21-38 (72)
8 2jp3_A FXYD domain-containing 3.8 7.4E+02 0.025 16.7 2.7 18 245-262 22-39 (67)
9 3o7q_A L-fucose-proton symport 3.8 1.7E+03 0.058 18.5 20.2 26 200-225 292-317 (438)
10 1x40_A ARAP2; ASAP-related pro 3.7 4.9E+02 0.017 18.1 2.0 28 15-44 14-41 (91)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=16.74 E-value=5e+02 Score=22.23 Aligned_cols=18 Identities=6% Similarity=-0.127 Sum_probs=10.2
Q ss_pred ChHHHHHHHHHHHhhhHH
Q 024263 201 DPLIGGTLLLSYTTGYVA 218 (270)
Q Consensus 201 s~~~g~~~l~~fglG~~l 218 (270)
+..........++++..+
T Consensus 286 ~~~~~~~~~~~~~~~~~~ 303 (451)
T 1pw4_A 286 ALDKSSWAYFLYEYAGIP 303 (451)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 555555566666665533
No 2
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2ybb_W* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* ...
Probab=13.93 E-value=1.7e+02 Score=18.39 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=14.3
Q ss_pred HHHHHHHHHhhhHHHHHHH
Q 024263 205 GGTLLLSYTTGYVAPLLLA 223 (270)
Q Consensus 205 g~~~l~~fglG~~lPlll~ 223 (270)
.+.+...++.|+++|+++.
T Consensus 22 ~~~~~~f~g~GF~~PF~i~ 40 (47)
T 1v54_L 22 LAMMTLFFGSGFAAPFFIV 40 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3456668899999998865
No 3
>2y69_L Cytochrome C oxidase subunit 7C; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=10.86 E-value=2.2e+02 Score=19.01 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 024263 204 IGGTLLLSYTTGYVAPLLLA 223 (270)
Q Consensus 204 ~g~~~l~~fglG~~lPlll~ 223 (270)
..+.+...++.|+++|+++.
T Consensus 37 ~~~~~~~f~g~GF~~PF~i~ 56 (63)
T 2y69_L 37 LLAMMTLFFGSGFAAPFFIV 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHH
Confidence 34455568899999998865
No 4
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=4.96 E-value=1.4e+02 Score=21.82 Aligned_cols=10 Identities=10% Similarity=0.212 Sum_probs=1.0
Q ss_pred hcCcCCccch
Q 024263 60 TSLSPCTLSV 69 (270)
Q Consensus 60 ~~lsPC~l~~ 69 (270)
++|+||..|+
T Consensus 14 ~~~~~~~MpY 23 (96)
T 1sg7_A 14 SGFNPRGSPY 23 (96)
T ss_dssp --------CC
T ss_pred CCCCCCccCC
Confidence 5678888654
No 5
>2y9u_A Tumor protein 63; apoptosis, sterIle alpha motif, 5-helix bundle, mutations, A syndrome; 1.60A {Homo sapiens} PDB: 1rg6_A
Probab=4.37 E-value=3.4e+02 Score=18.25 Aligned_cols=23 Identities=9% Similarity=-0.003 Sum_probs=16.3
Q ss_pred cccchhhhHHHHHHhhhhhHHHHHH
Q 024263 15 ADGSLGDMFGGFLYSAGQQANEAVL 39 (270)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~ 39 (270)
+|..+++|++.+= .+|+.+.-..
T Consensus 3 ~d~sv~~WLd~i~--m~~Y~d~F~~ 25 (69)
T 2y9u_A 3 TDCSIVSFLARLG--CSSCLDYFTT 25 (69)
T ss_dssp CCCBHHHHHHTTT--CGGGHHHHHT
T ss_pred CCCcHHHHHHHcC--ChHHHHHHHH
Confidence 6888899988877 5566655433
No 6
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=4.13 E-value=1.2e+03 Score=17.37 Aligned_cols=17 Identities=18% Similarity=0.505 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 024263 243 INPMSGALLLGGGLYTF 259 (270)
Q Consensus 243 i~~i~G~lli~~Gi~~~ 259 (270)
.+++.|+.+|+.|++.+
T Consensus 85 ~~~~~Gi~LIi~GV~ll 101 (137)
T 2i68_A 85 LPAIIGMMLICAGVLII 101 (137)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44688999999999865
No 7
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=3.88 E-value=7.6e+02 Score=16.86 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024263 245 PMSGALLLGGGLYTFLDR 262 (270)
Q Consensus 245 ~i~G~lli~~Gi~~~~~~ 262 (270)
.+.+.++.++|+..++++
T Consensus 21 LifA~vLfi~GI~iilS~ 38 (72)
T 2jo1_A 21 LVIAGILFILGILIVLSR 38 (72)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcC
Confidence 456777788888877754
No 8
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=3.78 E-value=7.4e+02 Score=16.71 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 024263 245 PMSGALLLGGGLYTFLDR 262 (270)
Q Consensus 245 ~i~G~lli~~Gi~~~~~~ 262 (270)
.+.+.++.++|+..++++
T Consensus 22 LifA~vLfi~GI~iilS~ 39 (67)
T 2jp3_A 22 LIFGGLLCIAGIALALSG 39 (67)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHcC
Confidence 456777788888877653
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=3.78 E-value=1.7e+03 Score=18.53 Aligned_cols=26 Identities=4% Similarity=-0.065 Sum_probs=14.3
Q ss_pred cChHHHHHHHHHHHhhhHHHHHHHHH
Q 024263 200 KDPLIGGTLLLSYTTGYVAPLLLAAS 225 (270)
Q Consensus 200 gs~~~g~~~l~~fglG~~lPlll~~~ 225 (270)
.|..........++++..+--++.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~g~ 317 (438)
T 3o7q_A 292 MTAGFAANYLTGTMVCFFIGRFTGTW 317 (438)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 36666666666666665443333333
No 10
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=3.75 E-value=4.9e+02 Score=18.13 Aligned_cols=28 Identities=7% Similarity=-0.045 Sum_probs=0.0
Q ss_pred cccchhhhHHHHHHhhhhhHHHHHHhhhcc
Q 024263 15 ADGSLGDMFGGFLYSAGQQANEAVLGQLSA 44 (270)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 44 (270)
.|.++.+|+.++= ++||.+.-..++..+
T Consensus 14 ~~~~V~~WL~~lg--L~qY~~~F~~~g~~~ 41 (91)
T 1x40_A 14 VNVDIKDFLMSIN--LEQYLLHFHESGFTT 41 (91)
T ss_dssp TCCBHHHHHHTTT--CGGGHHHHHHHTCCB
T ss_pred CCCCHHHHHHHCC--CHHHHHHHHHcCCCc
Done!