Query 024263
Match_columns 270
No_of_seqs 117 out of 1291
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 05:13:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024263.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024263hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v54l_ f.23.6.1 (L:) Mitochon 24.1 33 0.0024 20.1 2.9 17 207-223 23-39 (46)
2 d2uuia1 f.56.1.1 (A:2-147) Leu 7.3 3.7E+02 0.027 18.8 8.9 22 245-266 111-132 (146)
3 d1ucva_ a.60.1.2 (A:) Ephrin t 6.6 1.2E+02 0.0086 19.1 2.0 29 14-44 5-33 (81)
4 d1nbja_ g.3.3.2 (A:) Cycloviol 5.5 88 0.0064 16.1 0.6 6 180-185 6-11 (30)
5 d1x40a1 a.60.1.2 (A:8-85) Cent 5.1 1.6E+02 0.011 18.4 1.9 27 16-44 8-34 (78)
6 d3cx5c2 f.21.1.2 (C:1-261) Mit 4.5 7.1E+02 0.052 19.0 8.8 85 171-259 44-128 (261)
7 d1nekd_ f.21.2.2 (D:) Succinat 4.2 3.3E+02 0.024 18.0 3.3 20 241-260 14-33 (113)
8 d1pv7a_ f.38.1.2 (A:) Lactose 3.0 8.4E+02 0.061 17.5 9.4 14 126-139 382-395 (417)
9 d1b0xa_ a.60.1.2 (A:) EphA4 re 2.9 3.1E+02 0.023 16.3 1.9 27 16-44 4-30 (72)
10 d1oede_ f.36.1.1 (E:) Acetylch 2.8 9E+02 0.065 17.4 6.4 18 62-79 9-26 (260)
No 1
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=24.14 E-value=33 Score=20.09 Aligned_cols=17 Identities=24% Similarity=0.712 Sum_probs=12.8
Q ss_pred HHHHHHHhhhHHHHHHH
Q 024263 207 TLLLSYTTGYVAPLLLA 223 (270)
Q Consensus 207 ~~l~~fglG~~lPlll~ 223 (270)
...+-||.|++.|++++
T Consensus 23 ~m~~~fGsgfa~PF~iv 39 (46)
T d1v54l_ 23 MMTLFFGSGFAAPFFIV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccccchHHHH
Confidence 44457888999998875
No 2
>d2uuia1 f.56.1.1 (A:2-147) Leukotriene C4 synthase {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.31 E-value=3.7e+02 Score=18.79 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHhhhcCc
Q 024263 245 PMSGALLLGGGLYTFLDRLFPT 266 (270)
Q Consensus 245 ~i~G~lli~~Gi~~~~~~~~~~ 266 (270)
..+-..+++.+++-++..++|.
T Consensus 111 ~~~~~~ll~~a~~gi~~~~l~~ 132 (146)
T d2uuia1 111 ARALWLLVALAALGLLAHFLPA 132 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555553
No 3
>d1ucva_ a.60.1.2 (A:) Ephrin type-A receptor 8, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.55 E-value=1.2e+02 Score=19.12 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=21.8
Q ss_pred hcccchhhhHHHHHHhhhhhHHHHHHhhhcc
Q 024263 14 MADGSLGDMFGGFLYSAGQQANEAVLGQLSA 44 (270)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 44 (270)
..|.++.+|+.++= ++||.+.-..+++.+
T Consensus 5 ~~~~sV~~WL~~lg--L~qY~~~F~~~gi~~ 33 (81)
T d1ucva_ 5 SSGLTVGDWLDSIR--MGRYRDHFAAGGYSS 33 (81)
T ss_dssp CCCSBHHHHHHHTT--CGGGHHHHHHTTCCB
T ss_pred CCCCcHHHHHHHCc--cHHHHHHHHHcCCch
Confidence 35788999999987 888887776655443
No 4
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=5.52 E-value=88 Score=16.13 Aligned_cols=6 Identities=33% Similarity=0.927 Sum_probs=5.1
Q ss_pred ccCCCc
Q 024263 180 AASPCS 185 (270)
Q Consensus 180 ~~~PC~ 185 (270)
+|.||+
T Consensus 6 v~ipct 11 (30)
T d1nbja_ 6 VYIPCT 11 (30)
T ss_dssp SSSCCS
T ss_pred EEEeee
Confidence 689998
No 5
>d1x40a1 a.60.1.2 (A:8-85) Centaurin-delta 1 (Arap2) {Human(Homo sapiens) [TaxId: 9606]}
Probab=5.15 E-value=1.6e+02 Score=18.38 Aligned_cols=27 Identities=7% Similarity=-0.048 Sum_probs=19.9
Q ss_pred ccchhhhHHHHHHhhhhhHHHHHHhhhcc
Q 024263 16 DGSLGDMFGGFLYSAGQQANEAVLGQLSA 44 (270)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 44 (270)
|.++.+|+.++- ++|+.+....++..+
T Consensus 8 ~~dV~~WL~~lg--L~~Y~~~F~~~g~~~ 34 (78)
T d1x40a1 8 NVDIKDFLMSIN--LEQYLLHFHESGFTT 34 (78)
T ss_dssp CCBHHHHHHTTT--CGGGHHHHHHHTCCB
T ss_pred ChhHHHHHHHCc--hHHHHHHHHHcCCCC
Confidence 557889999886 888888776655443
No 6
>d3cx5c2 f.21.1.2 (C:1-261) Mitochondrial cytochrome b subunit, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.47 E-value=7.1e+02 Score=19.01 Aligned_cols=85 Identities=12% Similarity=-0.042 Sum_probs=50.9
Q ss_pred HHHHHHHhhccCCCchHHHHHHHHHHhhccChHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Q 024263 171 YLAGLTFALAASPCSTPVLATLLGYVATSKDPLIGGTLLLSYTTGYVAPLLLAASFAGALQSLLSFRKFSSWINPMSGAL 250 (270)
Q Consensus 171 fllG~~~gl~~~PC~~p~l~~il~~a~~~gs~~~g~~~l~~fglG~~lPlll~~~~~~~~~~~~~~~~~~~~i~~i~G~l 250 (270)
.+.|++.+.--.|+...-+-++.-. ..+...|-++=..-.-|...-++.+..-..|.--.++ -|..+...++.|++
T Consensus 44 iiTGi~L~~~Y~p~~~~A~~Sv~~i---~~~v~~Gw~iR~~H~~ga~~~~~~~~lH~~r~~~~gs-y~~pre~~W~~Gv~ 119 (261)
T d3cx5c2 44 IVTGIFMAMHYSSNIELAFSSVEHI---MRDVHNGYILRYLHANGASFFFMVMFMHMAKGLYYGS-YRSPRVTLWNVGVI 119 (261)
T ss_dssp HHHHHHHHTTCCCSTTTHHHHHHHH---HHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TSTTCHHHHHHHHH
T ss_pred HHHHHHHHheecCChHHHHHHHHHH---HhhhccChhhhhcccccHHHHHHHHHHHHHHHHHhcc-ccCccchhHHhhHH
Confidence 5678888888889876666666432 2355667777666666665555554443333211122 23336677888888
Q ss_pred HHHHHHHHH
Q 024263 251 LLGGGLYTF 259 (270)
Q Consensus 251 li~~Gi~~~ 259 (270)
+...-...-
T Consensus 120 l~~l~~~~a 128 (261)
T d3cx5c2 120 IFILTIATA 128 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777665433
No 7
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=4.17 E-value=3.3e+02 Score=17.95 Aligned_cols=20 Identities=10% Similarity=-0.116 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 024263 241 SWINPMSGALLLGGGLYTFL 260 (270)
Q Consensus 241 ~~i~~i~G~lli~~Gi~~~~ 260 (270)
=+.+|+++++++...+|++.
T Consensus 14 W~~qRvSAv~l~~l~~~~~~ 33 (113)
T d1nekd_ 14 FILVRATAIVLTLYIIYMVG 33 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999988664
No 8
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=3.04 E-value=8.4e+02 Score=17.50 Aligned_cols=14 Identities=21% Similarity=0.031 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 024263 126 PLAASGLAIVMGLN 139 (270)
Q Consensus 126 ~~~~G~lli~~Gl~ 139 (270)
.++.+++.++..+.
T Consensus 382 ~~~~~~~~~~~~~~ 395 (417)
T d1pv7a_ 382 YLVLGLVALGFTLI 395 (417)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 9
>d1b0xa_ a.60.1.2 (A:) EphA4 receptor tyrosine kinases {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.86 E-value=3.1e+02 Score=16.34 Aligned_cols=27 Identities=11% Similarity=0.107 Sum_probs=18.2
Q ss_pred ccchhhhHHHHHHhhhhhHHHHHHhhhcc
Q 024263 16 DGSLGDMFGGFLYSAGQQANEAVLGQLSA 44 (270)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 44 (270)
-.++.+|+.++- ++|+.+.-..+++.+
T Consensus 4 v~sV~~WL~~lg--L~~Y~~~F~~~~~~~ 30 (72)
T d1b0xa_ 4 VVSVGDWLQAIK--MDRYKDNFTAAGYTT 30 (72)
T ss_dssp SCCHHHHHHHTT--CGGGHHHHHHTTCCS
T ss_pred hhhHHHHHHHCC--cHHHHHHHHHcCCCc
Confidence 356788888775 787777765555443
No 10
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=2.82 E-value=9e+02 Score=17.35 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=12.5
Q ss_pred CcCCccchHHHHHHHHhh
Q 024263 62 LSPCTLSVLPLTLGYIGA 79 (270)
Q Consensus 62 lsPC~l~~~p~~~~~~~~ 79 (270)
+.||++-+.-..+++...
T Consensus 9 ilP~~li~~ls~~~F~lp 26 (260)
T d1oede_ 9 IAPCVLISSLVVLVYFLP 26 (260)
T ss_dssp HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHheEec
Confidence 359988777666777653
Done!