BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024264
         (270 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1P9Q|C Chain C, Structure Of A Hypothetical Protein Af0491 From
           Archaeoglobus Fulgidus
          Length = 256

 Score = 28.1 bits (61), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 4/87 (4%)

Query: 122 VKRMEEKKQVNLEVFEWFQTHVLD--SKLEP--SVGHEELCSLLSIVGKVKDEHISLLIN 177
           ++R  E+ +V++++F+  +  V D    L+P   +  EE+   + I  +     IS L N
Sbjct: 147 IERALEEAKVHIDIFKSVEAQVKDIVKALKPILPLKFEEMEIAIKIPPEHTGRAISALYN 206

Query: 178 AGILTRQLIDPDMYWFAIPNIGSVLKG 204
            G +TR+    D  W  +  I S + G
Sbjct: 207 FGGVTREEWQRDGSWICVMRIPSGMYG 233


>pdb|3C85|A Chain A, Crystal Structure Of Trka Domain Of Putative
           Glutathione-regulated Potassium-efflux Kefb From Vibrio
           Parahaemolyticus
 pdb|3C85|B Chain B, Crystal Structure Of Trka Domain Of Putative
           Glutathione-regulated Potassium-efflux Kefb From Vibrio
           Parahaemolyticus
 pdb|3C85|C Chain C, Crystal Structure Of Trka Domain Of Putative
           Glutathione-regulated Potassium-efflux Kefb From Vibrio
           Parahaemolyticus
 pdb|3C85|D Chain D, Crystal Structure Of Trka Domain Of Putative
           Glutathione-regulated Potassium-efflux Kefb From Vibrio
           Parahaemolyticus
          Length = 183

 Score = 27.7 bits (60), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 10/87 (11%)

Query: 180 ILTRQLIDPDMYWFAIPNIGSVLKGL-----SQGRKEIISFLNRRKYKEMMLALLEK--- 231
           +++    DPD +W  I + G V   L      QG +  +  L RR YK  + A+ E    
Sbjct: 86  VISGDATDPD-FWERILDTGHVKLVLLAXPHHQGNQTALEQLQRRNYKGQIAAIAEYPDQ 144

Query: 232 -KHLRFSPLDMRFHLRDLIGSGHLKTI 257
            + L  S +D  F++    GSG  + +
Sbjct: 145 LEGLLESGVDAAFNIYSEAGSGFARHV 171


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.137    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,517,768
Number of Sequences: 62578
Number of extensions: 228175
Number of successful extensions: 428
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 428
Number of HSP's gapped (non-prelim): 2
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)