BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024264
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P49842|STK19_HUMAN Serine/threonine-protein kinase 19 OS=Homo sapiens GN=STK19 PE=1
SV=2
Length = 368
Score = 106 bits (264), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/211 (28%), Positives = 118/211 (55%), Gaps = 10/211 (4%)
Query: 61 SIRPFILQSQLYSSVNDRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQI-E 119
++ P +L+SQ+YS V DRT DR+L+ L+ + +R+ +L D H I+F +DY ++ +
Sbjct: 165 ALPPIVLRSQVYSLVPDRTVADRQLKELQEQGEIRIVQLGFDLDAHGIIFTEDYRTRVCD 224
Query: 120 CVVKRMEEKKQVNLEVFEWFQTHVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAG 179
CV+K + + + F VL + + S +++ +D I+ L+NAG
Sbjct: 225 CVLKACDGRPYAG--AVQKFLASVLPACGDLSFQQDQMTQTFGF----RDSEITHLVNAG 278
Query: 180 ILTRQLIDPDMYWFAIPNIGSVLKGLSQGRKEIISFLNRRKYKEMMLA-LLEKKHLRFSP 238
+LT + D +W A+P G +K +GR+ ++S + + KY+E++L+ LL ++
Sbjct: 279 VLT--VRDAGSWWLAVPGAGRFIKYFVKGRQAVLSMVRKAKYRELLLSELLGRRAPVVVR 336
Query: 239 LDMRFHLRDLIGSGHLKTIHTPTGLVVQISK 269
L + +H+ DLIG+ + I T +G ++++ +
Sbjct: 337 LGLTYHVHDLIGAQLVDCISTTSGTLLRLPE 367
>sp|Q9JHN8|STK19_MOUSE Serine/threonine-protein kinase 19 OS=Mus musculus GN=Stk19 PE=2
SV=2
Length = 254
Score = 92.4 bits (228), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 110/208 (52%), Gaps = 12/208 (5%)
Query: 61 SIRPFILQSQLYSSVNDRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIEC 120
++ P L+SQ+YS V DRT D +L+ L+ +R+ +L D H I+F +DY +
Sbjct: 55 ALPPIALRSQVYSLVPDRTVADLQLKELQELGEIRIIQLGFDLDAHGIVFTEDYRTR--- 111
Query: 121 VVKRMEEKKQVNLEVFEWFQTHVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGI 180
V+K + + + F VL + + S +++ +D I+ L+NAG+
Sbjct: 112 VLKACDGRPCAG--AVQKFLASVLPACGDLSFQQDQMTQTYGF----RDPEITQLVNAGV 165
Query: 181 LTRQLIDPDMYWFAIPNIGSVLKGLSQGRKEIISFLNRRKYKEMMLA-LLEKKHLRFSPL 239
LT + D +W A+P G +K +GR+ ++S + + KY+E+ L+ LL ++ L
Sbjct: 166 LTVR--DAGSWWLAVPGAGRFIKCFVKGRQAVLSMVRKAKYRELALSELLGRRAPLAVRL 223
Query: 240 DMRFHLRDLIGSGHLKTIHTPTGLVVQI 267
+ +H+ DLIG+ + + T +G ++++
Sbjct: 224 GLAYHVHDLIGAQLVDCVPTTSGTLLRL 251
>sp|Q54WC0|STK19_DICDI Serine/threonine-protein kinase 19 homolog OS=Dictyostelium
discoideum GN=STK19 PE=3 SV=1
Length = 391
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 72/263 (27%), Positives = 131/263 (49%), Gaps = 42/263 (15%)
Query: 38 LTFSDTLVA-LRIMRAQFPHIDKVSIRPFILQSQLYSSVNDRTQVDRELESLRRERVLRV 96
LT D L++ + +++A++ +I P +LQS + S D +R ++ L+++ +R+
Sbjct: 130 LTTEDILLSQIELLKAEWDYITYNKSPPLVLQSVYHQSNKDS---ERSIQILKKKGTIRL 186
Query: 97 FKLNTGQDDHAIMFLDDYLNQIECV-------------------VKRMEEKKQVNLEVFE 137
F++ T +D+ I+ DY+ IE + +K K ++
Sbjct: 187 FQIATSLNDYCIIITTDYIKNIELLKIENTTIPNKIKPETLTNNMKNSSPIKSAPIDTIL 246
Query: 138 WFQTHVLD---SKLEP-----SVGHEELCSLLSIVGKVKDEH------ISLLINAGILTR 183
++ +LD KL P S+ +L LLSIV D+H I+ L+ G+L +
Sbjct: 247 LKRSEILDLFIKKLIPNFNEVSITRSKLFQLLSIVN---DDHHQQENIITHLVQCGLLLQ 303
Query: 184 QLIDPDMYWFAIPNIGSVLKGLSQGRKEIISFLNRRKYKEMMLALLEKKHLRFSPLDMRF 243
+ D + F++P G L +GRKEI+S + R KYKE++ L KK L++S + M+
Sbjct: 304 K--DDCTFTFSVPGAGGFFLNLMKGRKEILSNIQRLKYKEILKKDLLKKKLKYSNVQMQL 361
Query: 244 HLRDLIGSGHLKTIHTPTGLVVQ 266
++DL+G +K I T G +++
Sbjct: 362 LIKDLLGLNKIKIIPTTQGELIR 384
>sp|Q9P7Q6|MUG51_SCHPO Meiotically up-regulated gene 51 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug51 PE=1 SV=1
Length = 306
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 150 PSVGHEELCSLLSIVGKVKDEHISLLINAGILTRQLIDPDMYWFAIPNIGSVLKGLSQGR 209
PS EEL K E LLI+ G L L D Y ++PN+G L R
Sbjct: 183 PSYTSEEL--------KFNWEERRLLISMGFLI--LAGTDSYGISLPNLGIFTHILRNSR 232
Query: 210 KEIISFLNRRKYKEMMLALLEKKHLRFSP-------LDMRFHLRDLIGSGHLKTIHTPTG 262
++ ++L +R Y+E++ + L +++ + +F L D IG+G + + T G
Sbjct: 233 NDLSNYLKKRPYREVIESSLYNRNVSVACKKKNEAFFGWKFRLCDAIGAGLVDSFMTTCG 292
Query: 263 LVVQISK 269
+++K
Sbjct: 293 RAFRLTK 299
>sp|A4QJA5|RPOC2_AETCO DNA-directed RNA polymerase subunit beta'' OS=Aethionema
cordifolium GN=rpoC2 PE=3 SV=1
Length = 1385
Score = 35.0 bits (79), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 164 VGKVKDEHISLL------INAGILTRQLIDPDMYWFAIPNIGSVLKGLSQGRKEIISFLN 217
+G VK HIS + ++G+++ ++P +++I + + LSQ I FLN
Sbjct: 874 IGLVKS-HISYIRKRNNPPDSGLISADHMNP---FYSISPKAGIQQSLSQNNGTIRMFLN 929
Query: 218 RRKYKEMMLALLEKKHLRFSPLD-MRFH--LRDLIGSGHLKTIHT---PTGLVVQIS 268
R K + +L L R P D +++H + I L TI P G +QIS
Sbjct: 930 RNKESQFLLILSSSNCFRMGPFDHVKYHNVINQSIKKNPLITIKNASGPLGTTIQIS 986
>sp|Q2UVH8|ACRO_MELGA Acrosin OS=Meleagris gallopavo GN=ACR PE=1 SV=1
Length = 346
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 8/67 (11%)
Query: 63 RP-FILQSQLYSSVNDRTQVDRELE--SLRRERVLRVFKLNTGQDDHAIMFLD-----DY 114
RP +ILQS++ ND TQ+ +E+E S+RR + F T +D A++ LD Y
Sbjct: 89 RPNYILQSRVVIGANDLTQLGQEVEVRSIRRAILHEYFNNKTMINDIALLELDRPVHCSY 148
Query: 115 LNQIECV 121
Q+ CV
Sbjct: 149 YIQLACV 155
>sp|A4QJI9|RPOC2_AETGR DNA-directed RNA polymerase subunit beta'' OS=Aethionema
grandiflora GN=rpoC2 PE=3 SV=1
Length = 1383
Score = 33.5 bits (75), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 54/117 (46%), Gaps = 16/117 (13%)
Query: 164 VGKVKDEHISLL------INAGILTRQLIDPDMYWFAIPNIGSVLKGLSQGRKEIISFLN 217
+G VK HIS + ++G+++ ++P +++I + + LSQ I FLN
Sbjct: 872 IGLVKS-HISYIRKRTNPPDSGLISADHMNP---FYSISPKAGIQQSLSQNNGTIRMFLN 927
Query: 218 RRKYKEMMLALLEKKHLRFSPLD-MRFH--LRDLIGSGHLKTIH---TPTGLVVQIS 268
R K + +L L R P + +++H + I L TI P G +QIS
Sbjct: 928 RNKESQFLLILSSSNCFRMGPFNHVKYHNVINQSIKKNPLITIQKASGPLGTTIQIS 984
>sp|B9M3M9|MIAA2_GEOSF tRNA dimethylallyltransferase 2 OS=Geobacter sp. (strain FRC-32)
GN=miaA2 PE=3 SV=1
Length = 326
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 13/127 (10%)
Query: 76 NDRTQVDRELESLRRE-RVLRVFKLNTG--QDDHAIMFLDDYLNQIEC---VVKRMEEKK 129
NDR ++ R LE R+ R + F+ G ++ + + L + + E V KR++E
Sbjct: 160 NDRVRIIRALEVYRQTGRPMSQFRQEHGFAEEMYDCLMLGINVERQELYSRVEKRVDEMV 219
Query: 130 QVNL--EVFEWFQ-THVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGILTRQLI 186
+ L EV E F+ + D K S+G++E+CS LS G++ + LI TR+
Sbjct: 220 ESGLAAEVEELFRLGYARDLKAMRSIGYKEICSFLS--GEISLDQAVQLIKRD--TRRYA 275
Query: 187 DPDMYWF 193
M WF
Sbjct: 276 KRQMTWF 282
>sp|P53622|COPA_YEAST Coatomer subunit alpha OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=COP1 PE=1 SV=2
Length = 1201
Score = 31.2 bits (69), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 164 VGKVKDEHISLLINAGILTRQLIDPDMYWFA-------IPNIGSVLKGLSQGRKEIISFL 216
+ KV+ + + L G + IDP Y F P + ++K + + IIS+L
Sbjct: 574 ITKVQGKLVYCLNREGEIEILTIDPTEYRFKKALVNKNFPEVLRLIKDSNLVGQNIISYL 633
Query: 217 NRRKYKEMMLALLEKKHLRF 236
+ Y E+ L ++ H+RF
Sbjct: 634 QKSGYPEIALQFVQDPHIRF 653
>sp|P0C6X4|R1AB_CVHN5 Replicase polyprotein 1ab OS=Human coronavirus HKU1 (isolate N5)
GN=rep PE=3 SV=1
Length = 7132
Score = 31.2 bits (69), Expect = 9.0, Method: Composition-based stats.
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 31/184 (16%)
Query: 25 SSSSDRTLSLEE---NLTFSDTLVALRIMRAQFPHIDKVSIRPFILQSQLYSSVNDRTQV 81
+SS D T + N+ + T +M I+ +SIR LQ +LYS+V V
Sbjct: 5083 TSSGDATTAFANSVFNICQAVTANVCSLMACNGHKIEDLSIRN--LQKRLYSNVYRTDYV 5140
Query: 82 DRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVVKRMEEKKQVNLEVFE---W 138
D + E + + F + DD + + DY N+ N+ F+ +
Sbjct: 5141 DYTFVNEYYEFLCKHFSMMILSDDGVVCYNSDYANK----------GYIANISAFQQVLY 5190
Query: 139 FQTHVLDSKLEPSV------GHEELCSLLSIVGKVKDEHISL-------LINAGILTRQL 185
+Q +V S+ + V G E CS +++ K+ +++ L ++ AG L
Sbjct: 5191 YQNNVFMSESKCWVENDITNGPHEFCSQHTMLVKIDGDYVYLPYPDPSRILGAGCFVDDL 5250
Query: 186 IDPD 189
+ D
Sbjct: 5251 LKTD 5254
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.136 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,333,465
Number of Sequences: 539616
Number of extensions: 3741143
Number of successful extensions: 12636
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 12618
Number of HSP's gapped (non-prelim): 35
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)