Query 024264
Match_columns 270
No_of_seqs 113 out of 123
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 05:14:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9v_A Selenocysteine-specific 85.5 5.3 0.00018 30.9 9.0 108 69-199 21-132 (135)
2 1lva_A Selenocysteine-specific 83.1 9.1 0.00031 33.5 10.4 131 69-221 21-155 (258)
3 4aik_A Transcriptional regulat 77.3 15 0.00052 28.9 9.1 61 62-122 43-104 (151)
4 3s2w_A Transcriptional regulat 72.4 29 0.001 26.9 9.6 59 63-122 63-122 (159)
5 3bro_A Transcriptional regulat 71.6 26 0.00089 26.2 8.8 57 66-122 51-108 (141)
6 3oop_A LIN2960 protein; protei 71.3 26 0.0009 26.5 8.8 57 66-122 52-109 (143)
7 1lj9_A Transcriptional regulat 70.9 31 0.0011 26.0 9.9 57 66-122 44-101 (144)
8 1sfx_A Conserved hypothetical 70.7 22 0.00074 25.3 7.8 56 66-122 35-91 (109)
9 3bja_A Transcriptional regulat 70.4 31 0.001 25.7 10.7 57 66-122 48-105 (139)
10 3k0l_A Repressor protein; heli 70.2 36 0.0012 26.5 10.1 57 66-122 61-118 (162)
11 2qww_A Transcriptional regulat 69.7 23 0.00077 27.2 8.2 59 63-122 54-115 (154)
12 2nnn_A Probable transcriptiona 69.2 29 0.001 25.8 8.6 57 66-122 53-110 (140)
13 2eth_A Transcriptional regulat 68.4 38 0.0013 26.0 9.9 57 66-122 59-116 (154)
14 3deu_A Transcriptional regulat 68.2 20 0.00069 28.4 7.8 57 66-122 69-126 (166)
15 3eco_A MEPR; mutlidrug efflux 68.1 35 0.0012 25.5 9.7 58 65-122 47-105 (139)
16 2rdp_A Putative transcriptiona 68.1 34 0.0012 25.9 8.9 57 66-122 57-114 (150)
17 3bj6_A Transcriptional regulat 65.3 41 0.0014 25.5 8.9 59 63-122 53-112 (152)
18 3cjn_A Transcriptional regulat 63.3 49 0.0017 25.5 9.8 59 63-122 65-124 (162)
19 1jgs_A Multiple antibiotic res 63.1 44 0.0015 24.9 9.0 57 66-122 49-106 (138)
20 3bpv_A Transcriptional regulat 62.8 35 0.0012 25.4 7.9 57 66-122 44-101 (138)
21 3boq_A Transcriptional regulat 62.6 47 0.0016 25.5 8.8 58 65-122 62-120 (160)
22 1s3j_A YUSO protein; structura 62.3 49 0.0017 25.1 10.0 57 66-122 52-109 (155)
23 2fbh_A Transcriptional regulat 62.3 38 0.0013 25.4 8.1 57 66-122 53-110 (146)
24 3tgn_A ADC operon repressor AD 61.2 20 0.00069 27.1 6.3 57 66-122 52-109 (146)
25 3e6m_A MARR family transcripti 60.3 47 0.0016 25.8 8.5 57 66-122 68-125 (161)
26 2nyx_A Probable transcriptiona 60.3 60 0.002 25.4 10.0 57 66-122 60-117 (168)
27 3fm5_A Transcriptional regulat 60.0 33 0.0011 26.2 7.4 57 66-122 55-112 (150)
28 2fbi_A Probable transcriptiona 59.4 42 0.0014 25.0 7.8 59 63-122 49-108 (142)
29 2k02_A Ferrous iron transport 58.5 13 0.00045 27.8 4.5 35 64-98 15-50 (87)
30 1xn7_A Hypothetical protein YH 58.5 13 0.00044 27.1 4.4 35 64-98 15-50 (78)
31 3g3z_A NMB1585, transcriptiona 58.1 22 0.00075 27.0 6.0 59 63-122 44-103 (145)
32 3nqo_A MARR-family transcripti 57.6 74 0.0025 25.7 9.6 58 65-122 57-115 (189)
33 3ech_A MEXR, multidrug resista 57.3 34 0.0012 25.9 7.0 57 66-122 52-109 (142)
34 2hr3_A Probable transcriptiona 55.3 40 0.0014 25.4 7.1 57 66-122 51-108 (147)
35 3kp7_A Transcriptional regulat 55.3 40 0.0014 25.7 7.2 57 66-122 52-111 (151)
36 3bdd_A Regulatory protein MARR 54.1 39 0.0013 25.2 6.8 53 66-118 46-99 (142)
37 2fu4_A Ferric uptake regulatio 53.4 8.9 0.0003 27.1 2.8 38 66-103 34-77 (83)
38 3r0a_A Putative transcriptiona 53.3 59 0.002 24.7 7.8 57 64-120 41-102 (123)
39 2gxg_A 146AA long hypothetical 52.2 71 0.0024 23.8 9.9 56 66-121 51-107 (146)
40 3jw4_A Transcriptional regulat 50.5 27 0.00094 26.6 5.5 59 64-122 56-115 (148)
41 2fa5_A Transcriptional regulat 49.0 44 0.0015 25.7 6.5 57 66-122 64-121 (162)
42 3nrv_A Putative transcriptiona 49.0 40 0.0014 25.5 6.2 57 66-122 55-112 (148)
43 2y75_A HTH-type transcriptiona 47.9 11 0.00039 28.9 2.8 46 151-196 26-71 (129)
44 2o03_A Probable zinc uptake re 45.9 16 0.00054 28.5 3.4 41 66-106 27-73 (131)
45 3lwf_A LIN1550 protein, putati 44.1 20 0.00068 29.3 3.8 51 146-196 39-89 (159)
46 1bja_A Transcription regulator 43.0 25 0.00087 26.7 4.0 51 65-122 30-82 (95)
47 3mwm_A ZUR, putative metal upt 42.6 14 0.00049 29.2 2.6 41 66-106 30-76 (139)
48 3k69_A Putative transcription 42.2 37 0.0013 27.6 5.2 43 141-184 19-61 (162)
49 3t8r_A Staphylococcus aureus C 41.5 21 0.00072 28.3 3.5 56 142-197 19-74 (143)
50 3hsr_A HTH-type transcriptiona 40.6 95 0.0032 23.3 7.1 59 64-122 49-108 (140)
51 2fe3_A Peroxide operon regulat 40.2 18 0.00061 28.7 2.9 43 65-107 37-85 (145)
52 2a61_A Transcriptional regulat 39.9 1E+02 0.0035 22.9 7.2 57 66-122 48-105 (145)
53 2w57_A Ferric uptake regulatio 38.6 19 0.00064 28.9 2.8 42 65-106 33-80 (150)
54 1mzb_A Ferric uptake regulatio 38.3 18 0.00062 28.3 2.6 41 66-106 35-81 (136)
55 3u2r_A Regulatory protein MARR 37.4 1.4E+02 0.0048 23.0 8.3 59 64-122 61-120 (168)
56 1yku_A Hypothetical protein PX 37.3 24 0.00081 28.8 3.1 24 197-220 80-103 (136)
57 2d1h_A ST1889, 109AA long hypo 36.9 83 0.0028 22.1 6.0 57 66-122 37-97 (109)
58 2bv6_A MGRA, HTH-type transcri 36.9 1.1E+02 0.0038 22.7 7.0 59 63-122 50-109 (142)
59 3f3x_A Transcriptional regulat 36.6 1E+02 0.0035 23.0 6.8 58 63-122 50-108 (144)
60 1qgp_A Protein (double strande 36.3 36 0.0012 24.3 3.7 59 137-196 17-75 (77)
61 2fbk_A Transcriptional regulat 36.1 49 0.0017 26.3 5.0 58 65-122 86-144 (181)
62 2z99_A Putative uncharacterize 35.8 2.1E+02 0.0073 24.7 9.3 106 66-184 31-144 (219)
63 2xig_A Ferric uptake regulatio 35.1 24 0.00081 28.2 2.9 41 63-103 40-86 (150)
64 3cuq_B Vacuolar protein-sortin 34.3 41 0.0014 29.0 4.5 106 64-198 94-213 (218)
65 2jt1_A PEFI protein; solution 34.2 35 0.0012 24.7 3.4 49 44-102 7-62 (77)
66 3pqk_A Biofilm growth-associat 33.0 52 0.0018 23.8 4.3 59 206-268 22-80 (102)
67 1qbj_A Protein (double-strande 32.7 50 0.0017 24.0 4.0 65 136-201 12-76 (81)
68 1qgp_A Protein (double strande 32.2 28 0.00095 24.9 2.5 47 44-97 17-64 (77)
69 3qrx_B Melittin; calcium-bindi 32.1 24 0.00082 20.6 1.7 24 197-220 1-24 (26)
70 1ub9_A Hypothetical protein PH 31.9 1.3E+02 0.0044 20.9 8.3 57 66-122 31-88 (100)
71 2g9w_A Conserved hypothetical 31.2 1.1E+02 0.0037 23.5 6.1 33 66-98 25-62 (138)
72 3pmd_A Conserved domain protei 30.7 36 0.0012 28.2 3.2 24 197-220 83-106 (153)
73 2htj_A P fimbrial regulatory p 30.6 44 0.0015 23.4 3.4 43 66-108 15-58 (81)
74 1qbj_A Protein (double-strande 30.5 30 0.001 25.2 2.5 43 66-110 28-71 (81)
75 1t6s_A Conserved hypothetical 30.2 54 0.0019 27.1 4.3 109 63-183 21-137 (162)
76 2frh_A SARA, staphylococcal ac 29.0 76 0.0026 23.8 4.8 59 64-122 52-111 (127)
77 3eyy_A Putative iron uptake re 28.7 29 0.00098 27.6 2.3 41 66-106 34-80 (145)
78 4g6q_A Putative uncharacterize 27.9 14 0.00049 30.5 0.4 62 195-259 10-72 (182)
79 1xd7_A YWNA; structural genomi 27.7 35 0.0012 26.9 2.6 44 153-197 25-68 (145)
80 3cdh_A Transcriptional regulat 26.0 1.4E+02 0.0048 22.5 5.9 57 66-122 58-115 (155)
81 1p6r_A Penicillinase repressor 25.7 22 0.00075 24.9 1.0 36 66-101 24-64 (82)
82 2hc5_A ORF 99, hypothetical pr 24.0 47 0.0016 26.1 2.7 33 234-266 51-83 (117)
83 3dp5_A OMCF, cytochrome C fami 22.3 56 0.0019 23.7 2.7 24 32-55 75-99 (99)
84 4ets_A Ferric uptake regulatio 22.3 47 0.0016 26.9 2.5 43 64-106 47-97 (162)
85 3cuo_A Uncharacterized HTH-typ 21.5 2.1E+02 0.0071 19.8 6.3 51 66-119 39-90 (99)
86 3rnv_A HC-Pro, helper componen 20.4 66 0.0023 26.8 3.0 38 32-70 74-111 (158)
No 1
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=85.48 E-value=5.3 Score=30.93 Aligned_cols=108 Identities=15% Similarity=0.139 Sum_probs=69.5
Q ss_pred hhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHH-HHHHHhhhhhhchHHHHHHHHHHhhcc
Q 024264 69 SQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIE-CVVKRMEEKKQVNLEVFEWFQTHVLDS 146 (270)
Q Consensus 69 ~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~-~~~~~~~~~~~~~~~~~~kF~~~l~~~ 146 (270)
+.|-.... ++..++..++.|...|.|..|-- +.+.+ + ...+|...+. +.. +++..|. ..+
T Consensus 21 ~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~--~~~~~-~-~~~~~~~~l~~~l~-----------~~L~~yH---~~~ 82 (135)
T 2v9v_A 21 QEAATRASLSLEETRKLLQSMAAAGQVTLLRV--ENDLY-A-ISTERYQAWWQAVT-----------RALEEFH---SRY 82 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEE--TTEEE-E-EEHHHHHHHHHHHH-----------HHHHHHH---HHC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCcEEEEec--CCCeE-E-ecHHHHHHHHHHHH-----------HHHHHHH---HhC
Confidence 55544443 67889989999999999776532 12222 3 4444444444 332 3344444 589
Q ss_pred CCCCccchhhhhhhhhc--cCCCChHHHHHHHHcCccccccCCCCeEEEecCCch
Q 024264 147 KLEPSVGHEELCSLLSI--VGKVKDEHISLLINAGILTRQLIDPDMYWFAIPNIG 199 (270)
Q Consensus 147 ~~~~si~~~~L~~~ls~--~~~f~d~eit~LV~aGfLt~~~~d~~~y~lSiPn~G 199 (270)
|...-+++.+|.+.+.. ...+-+.=+..|+..|.|... ++ |+++|+..
T Consensus 83 P~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~--~~---~v~Lp~h~ 132 (135)
T 2v9v_A 83 PLRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLA--AN---TVALAGFT 132 (135)
T ss_dssp TTSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEC--SS---EEEETTCC
T ss_pred CCccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEec--CC---EEECCCCc
Confidence 99999999999877631 112234457888999999973 22 78889865
No 2
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=83.09 E-value=9.1 Score=33.53 Aligned_cols=131 Identities=14% Similarity=0.118 Sum_probs=86.3
Q ss_pred hhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHHHHhhhhhhchHHHHHHHHHHhhccC
Q 024264 69 SQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVVKRMEEKKQVNLEVFEWFQTHVLDSK 147 (270)
Q Consensus 69 ~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~~~~~~~~~~~~~~~~kF~~~l~~~~ 147 (270)
+.|-.... ++..++..++.|...|.|..|.- +.+.+ ++-.+-|..+..+.. +++.. +-..||
T Consensus 21 ~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~-----------~~L~~---~H~~~P 83 (258)
T 1lva_A 21 QEAATRASLSLEETRKLLQSMAAAGQVTLLRV--ENDLY-AISTERYQAWWQAVT-----------RALEE---FHSRYP 83 (258)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE--TTEEE-EEEHHHHHHHHHHHH-----------HHHHH---HHHHCT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCEEEecc--CCccE-EEcHHHHHHHHHHHH-----------HHHHH---HHHhCC
Confidence 55544444 67889989999999999776532 12222 444554444444432 33334 445899
Q ss_pred CCCccchhhhhhhhhc--cCCCChHHHHHHHHcCccccccCCCCeEEEecCCch-HHHHHHHHHHHHHHHHHhccch
Q 024264 148 LEPSVGHEELCSLLSI--VGKVKDEHISLLINAGILTRQLIDPDMYWFAIPNIG-SVLKGLSQGRKEIISFLNRRKY 221 (270)
Q Consensus 148 ~~~si~~~~L~~~ls~--~~~f~d~eit~LV~aGfLt~~~~d~~~y~lSiPn~G-~flkll~~GR~~ll~~Lkk~ky 221 (270)
...-+++.+|.+.+.. ...+-+.=+..|+..|.|... ++ |+++|+.. .+.....+....|...+++..|
T Consensus 84 ~~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~--~~---~v~l~~h~~~~~~~~~~~~~~i~~~~~~~g~ 155 (258)
T 1lva_A 84 LRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLA--AN---TVALAGFTPSFSETQKKLLKDLEDKYRVSRW 155 (258)
T ss_dssp TSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEE--TT---EEEETTCCCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred CccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEec--CC---EEeCCCCccCCCHHHHHHHHHHHHHHHHCCC
Confidence 9999999999877621 112223446778889998863 22 78889954 5778888888999999977664
No 3
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=77.27 E-value=15 Score=28.94 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=49.6
Q ss_pred CCCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 62 IRPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 62 lPPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
.||-++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.=...|..|+.=.+.+....
T Consensus 43 ~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~ 104 (151)
T 4aik_A 43 LPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVD 104 (151)
T ss_dssp SCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHH
T ss_pred cCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHH
Confidence 466677788877665 9999999999999999999987777666778888988777776644
No 4
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=72.44 E-value=29 Score=26.87 Aligned_cols=59 Identities=12% Similarity=0.070 Sum_probs=46.1
Q ss_pred CCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 63 RPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 63 PPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
|| ++.++|-..+. +++.|-+-|..|.++|-|.+-.-+.+.-...|..|+.=.+.+....
T Consensus 63 ~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 122 (159)
T 3s2w_A 63 DG-INQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMK 122 (159)
T ss_dssp CS-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 55 58888887776 9999999999999999999977666555668888988887777654
No 5
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=71.56 E-value=26 Score=26.25 Aligned_cols=57 Identities=11% Similarity=0.107 Sum_probs=45.2
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 51 ~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~ 108 (141)
T 3bro_A 51 VLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL 108 (141)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH
T ss_pred cCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHH
Confidence 67788877666 9999999999999999999877666555667778887776666543
No 6
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=71.30 E-value=26 Score=26.50 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=43.4
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-.+.+....
T Consensus 52 ~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 109 (143)
T 3oop_A 52 ISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELR 109 (143)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHH
Confidence 57777777665 9999999999999999999866555555567888998888877654
No 7
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=70.86 E-value=31 Score=25.96 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=45.8
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 44 ~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (144)
T 1lj9_A 44 IIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV 101 (144)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHH
Confidence 57788877776 9999999999999999999977666665667778888777776543
No 8
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=70.71 E-value=22 Score=25.34 Aligned_cols=56 Identities=11% Similarity=-0.003 Sum_probs=42.1
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++..+|-..+. +++.|-|-|..|.+.|.|++..-+ +.-...+..++.-...+....
T Consensus 35 ~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~-~~r~~~~~~t~~g~~~~~~~~ 91 (109)
T 1sfx_A 35 MRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE-KGWVGYIYSAEKPEKVLKEFK 91 (109)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE-SSSEEEEEEECCHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec-CCceEEEEecCcHHHHHHHHH
Confidence 57777777666 999999999999999999988766 444445666766666665543
No 9
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=70.42 E-value=31 Score=25.69 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=46.0
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 48 ~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (139)
T 3bja_A 48 VSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVD 105 (139)
T ss_dssp EEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHH
Confidence 67888888776 9999999999999999999877665555667778888777776643
No 10
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=70.22 E-value=36 Score=26.47 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=47.2
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...|..|+.=.+.+....
T Consensus 61 ~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 118 (162)
T 3k0l_A 61 LSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCN 118 (162)
T ss_dssp CCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHH
Confidence 67888887776 9999999999999999999977666666678889988888777654
No 11
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=69.69 E-value=23 Score=27.18 Aligned_cols=59 Identities=7% Similarity=-0.018 Sum_probs=46.2
Q ss_pred CCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeE--EEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 63 RPFILQSQLYSSVN-DRTQVDRELESLRRERVLRV--FKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 63 PPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~--f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
|| ++.++|-..+. +++.|-+-|..|.++|-|.+ ..-+.+.-.+.+..|+.=...+....
T Consensus 54 ~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~ 115 (154)
T 2qww_A 54 PG-ISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRST 115 (154)
T ss_dssp TT-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHH
Confidence 55 78888888776 99999999999999999998 66555555667888888777776654
No 12
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=69.21 E-value=29 Score=25.84 Aligned_cols=57 Identities=12% Similarity=0.057 Sum_probs=43.3
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 53 ~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 110 (140)
T 2nnn_A 53 CPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGL 110 (140)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHH
Confidence 56677766665 9999999999999999999876555444456778888777766543
No 13
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=68.41 E-value=38 Score=26.02 Aligned_cols=57 Identities=5% Similarity=0.053 Sum_probs=45.7
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 59 ~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 116 (154)
T 2eth_A 59 KKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL 116 (154)
T ss_dssp BCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH
Confidence 57777777666 9999999999999999999977666555667778888888777644
No 14
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=68.20 E-value=20 Score=28.44 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=41.6
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...|..|+.=.+.+....
T Consensus 69 ~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 126 (166)
T 3deu_A 69 QSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEME 126 (166)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHH
T ss_pred CCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 88888888776 9999999999999999999866554444457788888877777654
No 15
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=68.07 E-value=35 Score=25.52 Aligned_cols=58 Identities=12% Similarity=0.178 Sum_probs=45.8
Q ss_pred eeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 65 FILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 65 lVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
=++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 47 ~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 105 (139)
T 3eco_A 47 GLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFT 105 (139)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHH
T ss_pred CcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHH
Confidence 367788877665 9999999999999999999977666666667888988888877654
No 16
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=68.07 E-value=34 Score=25.95 Aligned_cols=57 Identities=12% Similarity=0.141 Sum_probs=43.5
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.+.|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 57 ~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 114 (150)
T 2rdp_A 57 LTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVI 114 (150)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHH
Confidence 57777777666 9999999999999999999877665555557778888777776644
No 17
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=65.35 E-value=41 Score=25.49 Aligned_cols=59 Identities=14% Similarity=0.112 Sum_probs=45.4
Q ss_pred CCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 63 RPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 63 PPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
|| ++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 53 ~~-~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 112 (152)
T 3bj6_A 53 PG-ATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIR 112 (152)
T ss_dssp TT-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHH
Confidence 44 57888877676 9999999999999999999866555444557778887777766543
No 18
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=63.28 E-value=49 Score=25.47 Aligned_cols=59 Identities=10% Similarity=0.060 Sum_probs=45.1
Q ss_pred CCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 63 RPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 63 PPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
+| ++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 65 ~~-~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 124 (162)
T 3cjn_A 65 DG-LPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW 124 (162)
T ss_dssp CS-EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 45 58888888776 9999999999999999999876555555567778887777666543
No 19
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=63.10 E-value=44 Score=24.86 Aligned_cols=57 Identities=12% Similarity=0.038 Sum_probs=45.4
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-.+.+....
T Consensus 49 ~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 106 (138)
T 1jgs_A 49 ITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCH 106 (138)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHH
Confidence 46677766665 9999999999999999999877666555667788998888877654
No 20
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=62.85 E-value=35 Score=25.42 Aligned_cols=57 Identities=14% Similarity=0.124 Sum_probs=43.4
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.+.|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 44 ~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (138)
T 3bpv_A 44 IKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL 101 (138)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH
Confidence 46777777665 9999999999999999999876555444456778887777766543
No 21
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=62.60 E-value=47 Score=25.49 Aligned_cols=58 Identities=9% Similarity=0.059 Sum_probs=41.4
Q ss_pred eeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 65 FILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 65 lVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
=++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 62 ~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 120 (160)
T 3boq_A 62 GLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQAS 120 (160)
T ss_dssp CEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHH
Confidence 378888888776 9999999999999999999865554444446778888777776543
No 22
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=62.31 E-value=49 Score=25.13 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=44.7
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 52 ~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (155)
T 1s3j_A 52 LKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVL 109 (155)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 67788877666 9999999999999999999876655555556778887777766543
No 23
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=62.26 E-value=38 Score=25.39 Aligned_cols=57 Identities=18% Similarity=0.199 Sum_probs=43.5
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.+.|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 53 ~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 110 (146)
T 2fbh_A 53 PTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE 110 (146)
T ss_dssp CBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH
T ss_pred CCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHH
Confidence 67777777666 9999999999999999999865444444446777887777776543
No 24
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=61.15 E-value=20 Score=27.14 Aligned_cols=57 Identities=19% Similarity=0.113 Sum_probs=40.2
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+-.|+.-...+....
T Consensus 52 ~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 52 LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 88999988776 9999999999999999999866555444456777887777776653
No 25
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=60.27 E-value=47 Score=25.78 Aligned_cols=57 Identities=11% Similarity=0.121 Sum_probs=43.8
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.+.|-..+. +++.|-+-|..|.++|-|.+-.-+.+.-...|..|+.=.+.+....
T Consensus 68 ~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 125 (161)
T 3e6m_A 68 LTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEIS 125 (161)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHH
Confidence 67888888776 9999999999999999999865555444557888888887777654
No 26
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=60.25 E-value=60 Score=25.44 Aligned_cols=57 Identities=11% Similarity=0.100 Sum_probs=45.4
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+-.-+.+.-...+..|+.=...+....
T Consensus 60 ~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 117 (168)
T 2nyx_A 60 INLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVT 117 (168)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 67888888776 9999999999999999999876655555667778887777766543
No 27
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=60.05 E-value=33 Score=26.21 Aligned_cols=57 Identities=9% Similarity=0.043 Sum_probs=39.3
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...|..|+.=.+.+....
T Consensus 55 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 112 (150)
T 3fm5_A 55 VNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAK 112 (150)
T ss_dssp CCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHH
Confidence 78888888776 9999999999999999999866555444557778888777777654
No 28
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=59.37 E-value=42 Score=24.99 Aligned_cols=59 Identities=15% Similarity=0.129 Sum_probs=46.1
Q ss_pred CCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 63 RPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 63 PPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
+| ++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 49 ~~-~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (142)
T 2fbi_A 49 GE-MESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMS 108 (142)
T ss_dssp CS-EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 45 78888888776 9999999999999999999876555444446778888777776644
No 29
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=58.53 E-value=13 Score=27.78 Aligned_cols=35 Identities=14% Similarity=0.114 Sum_probs=31.2
Q ss_pred CeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEE
Q 024264 64 PFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFK 98 (270)
Q Consensus 64 PlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~ 98 (270)
..|++.+|-..+. ++..|.|-|+.|.++|.|+++.
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4577888888887 9999999999999999999997
No 30
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=58.50 E-value=13 Score=27.10 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=30.2
Q ss_pred CeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEE
Q 024264 64 PFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFK 98 (270)
Q Consensus 64 PlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~ 98 (270)
..|..++|-..+. ++..|.|-|+.|.++|.|+++.
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEec
Confidence 4467778878777 9999999999999999999974
No 31
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=58.15 E-value=22 Score=27.04 Aligned_cols=59 Identities=5% Similarity=-0.010 Sum_probs=44.9
Q ss_pred CCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 63 RPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 63 PPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
|| ++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...|..|+.=.+.+....
T Consensus 44 ~~-~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 103 (145)
T 3g3z_A 44 GS-RTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLT 103 (145)
T ss_dssp CS-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHH
T ss_pred CC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHH
Confidence 55 78888887776 9999999999999999999754444333447788888777776543
No 32
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=57.64 E-value=74 Score=25.66 Aligned_cols=58 Identities=7% Similarity=0.062 Sum_probs=45.8
Q ss_pred eeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 65 FILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 65 lVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
=++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...|..|+.=.+.+....
T Consensus 57 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 115 (189)
T 3nqo_A 57 ETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCS 115 (189)
T ss_dssp GCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 356677766665 8999999999999999999977666666678888888777776644
No 33
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=57.35 E-value=34 Score=25.89 Aligned_cols=57 Identities=14% Similarity=0.175 Sum_probs=36.8
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...|..|+.=.+.+....
T Consensus 52 ~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 109 (142)
T 3ech_A 52 LNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAE 109 (142)
T ss_dssp CCHHHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHH
Confidence 57788877666 9999999999999999999865554444446677887777776643
No 34
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=55.33 E-value=40 Score=25.43 Aligned_cols=57 Identities=9% Similarity=0.037 Sum_probs=41.9
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 51 ~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (147)
T 2hr3_A 51 VTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNR 108 (147)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHH
Confidence 67888887776 9999999999999999999865544444456778888777776654
No 35
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=55.28 E-value=40 Score=25.74 Aligned_cols=57 Identities=18% Similarity=0.176 Sum_probs=39.4
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEE--ecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFK--LNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~--i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+-+ -+.+.-.+.+..|+.=...+....
T Consensus 52 ~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~ 111 (151)
T 3kp7_A 52 LTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERK 111 (151)
T ss_dssp BCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHH
Confidence 67777776665 9999999999999999999865 333333446778888887777654
No 36
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=54.06 E-value=39 Score=25.18 Aligned_cols=53 Identities=17% Similarity=0.167 Sum_probs=42.3
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQI 118 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v 118 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+
T Consensus 46 ~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 46 LHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 56677777665 999999999999999999988766555555777888877776
No 37
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=53.40 E-value=8.9 Score=27.05 Aligned_cols=38 Identities=16% Similarity=0.326 Sum_probs=32.2
Q ss_pred eeehhhhhhc-----C-CcchHHHHHHHHHhcCceeEEEecCCC
Q 024264 66 ILQSQLYSSV-----N-DRTQVDRELESLRRERVLRVFKLNTGQ 103 (270)
Q Consensus 66 Vl~~qLysll-----~-~~T~VdReL~~L~~~G~lR~f~i~~g~ 103 (270)
++..+|+..+ . +++.|-|-|+.|.+.|.|+++..+++.
T Consensus 34 ~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~ 77 (83)
T 2fu4_A 34 VSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGK 77 (83)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGC
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCc
Confidence 6778888877 3 889999999999999999998776544
No 38
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=53.26 E-value=59 Score=24.74 Aligned_cols=57 Identities=21% Similarity=0.235 Sum_probs=40.5
Q ss_pred CeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcE----EEEehHHHHHHHHH
Q 024264 64 PFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDH----AIMFLDDYLNQIEC 120 (270)
Q Consensus 64 PlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~----~lV~t~Dy~~~v~~ 120 (270)
|-++..+|...+. +++.|-|-|..|.++|.|++...+.+...+ ..+..+.....+..
T Consensus 41 ~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~ 102 (123)
T 3r0a_A 41 RWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQK 102 (123)
T ss_dssp CCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHH
Confidence 4488999998776 999999999999999999987765433222 22334444444444
No 39
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=52.23 E-value=71 Score=23.85 Aligned_cols=56 Identities=7% Similarity=0.025 Sum_probs=44.1
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECV 121 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~ 121 (270)
++.+.|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+...
T Consensus 51 ~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~ 107 (146)
T 2gxg_A 51 KTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKG 107 (146)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHH
T ss_pred cCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHH
Confidence 57777777666 999999999999999999987666555566677788766666654
No 40
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=50.53 E-value=27 Score=26.62 Aligned_cols=59 Identities=14% Similarity=0.095 Sum_probs=36.9
Q ss_pred CeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 64 PFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 64 PlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
|=++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...|..|+.=.+.+....
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 115 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFN 115 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHH
Confidence 3467788887676 9999999999999999999865544444446778887777776644
No 41
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=49.05 E-value=44 Score=25.73 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=38.2
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 64 ~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 121 (162)
T 2fa5_A 64 SSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVA 121 (162)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 56777777666 9999999999999999999765444333345667887777766543
No 42
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=48.97 E-value=40 Score=25.50 Aligned_cols=57 Identities=14% Similarity=0.157 Sum_probs=37.4
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 55 ~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~ 112 (148)
T 3nrv_A 55 CSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVAS 112 (148)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHH
Confidence 45555655554 8999999999999999999876555444556778887777776644
No 43
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=47.93 E-value=11 Score=28.91 Aligned_cols=46 Identities=13% Similarity=0.098 Sum_probs=28.8
Q ss_pred ccchhhhhhhhhccCCCChHHHHHHHHcCccccccCCCCeEEEecC
Q 024264 151 SVGHEELCSLLSIVGKVKDEHISLLINAGILTRQLIDPDMYWFAIP 196 (270)
Q Consensus 151 si~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~~~~d~~~y~lSiP 196 (270)
.++..+|.+.+.....+-.+.+..|.++|++....+..|.|.++-|
T Consensus 26 ~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~ 71 (129)
T 2y75_A 26 PTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSE 71 (129)
T ss_dssp CBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSC
T ss_pred cCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCC
Confidence 4555566655533334556678999999999874333467888876
No 44
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=45.87 E-value=16 Score=28.45 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=33.5
Q ss_pred eeehhhhhhc-----C-CcchHHHHHHHHHhcCceeEEEecCCCCcE
Q 024264 66 ILQSQLYSSV-----N-DRTQVDRELESLRRERVLRVFKLNTGQDDH 106 (270)
Q Consensus 66 Vl~~qLysll-----~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~ 106 (270)
++...||..+ . +++.|=|.|+.|.+.|.|+++..++|...|
T Consensus 27 ~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 27 RSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred CCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 5677777766 2 789999999999999999999988755444
No 45
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=44.13 E-value=20 Score=29.32 Aligned_cols=51 Identities=14% Similarity=0.046 Sum_probs=30.7
Q ss_pred cCCCCccchhhhhhhhhccCCCChHHHHHHHHcCccccccCCCCeEEEecC
Q 024264 146 SKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGILTRQLIDPDMYWFAIP 196 (270)
Q Consensus 146 ~~~~~si~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~~~~d~~~y~lSiP 196 (270)
++....++..++.+.+.....+-.+-+..|.++|++.+..+..|-|.++-|
T Consensus 39 ~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 89 (159)
T 3lwf_A 39 RIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGD 89 (159)
T ss_dssp TTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSC
T ss_pred cCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCC
Confidence 333334555566655533344556668899999999985433345655544
No 46
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=43.04 E-value=25 Score=26.72 Aligned_cols=51 Identities=12% Similarity=0.294 Sum_probs=39.0
Q ss_pred eeeehhhhh-hcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 65 FILQSQLYS-SVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 65 lVl~~qLys-ll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
.++.+.|-. ... |+|.|-|.|.-|+++|-|. ..|. | ++.|+.=...+..+.
T Consensus 30 ~~t~~~Lae~~l~~drstvsrnl~~L~r~GlVe----~~~~-D--l~LT~~G~~~l~~a~ 82 (95)
T 1bja_A 30 FITAAEVREVHPDLGNAVVNSNIGVLIKKGLVE----KSGD-G--LIITGEAQDIISNAA 82 (95)
T ss_dssp TBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSEE----EETT-E--EEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcccHHHHHHHHHHHHHCCCee----cCCC-C--eeeCHhHHHHHHHHH
Confidence 566677766 444 9999999999999999999 2223 3 778888888777654
No 47
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=42.61 E-value=14 Score=29.18 Aligned_cols=41 Identities=22% Similarity=0.213 Sum_probs=32.5
Q ss_pred eeehhhhhhcC------CcchHHHHHHHHHhcCceeEEEecCCCCcE
Q 024264 66 ILQSQLYSSVN------DRTQVDRELESLRRERVLRVFKLNTGQDDH 106 (270)
Q Consensus 66 Vl~~qLysll~------~~T~VdReL~~L~~~G~lR~f~i~~g~d~~ 106 (270)
++...||..+. +++.|=|.|+.|.+.|.|+++..+.|...|
T Consensus 30 ~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y 76 (139)
T 3mwm_A 30 RSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVY 76 (139)
T ss_dssp EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEE
T ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEE
Confidence 46667776652 789999999999999999999987654443
No 48
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=42.19 E-value=37 Score=27.61 Aligned_cols=43 Identities=21% Similarity=0.175 Sum_probs=31.1
Q ss_pred HHhhccCCCCccchhhhhhhhhccCCCChHHHHHHHHcCccccc
Q 024264 141 THVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGILTRQ 184 (270)
Q Consensus 141 ~~l~~~~~~~si~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~~ 184 (270)
-++-.++. ..++..+|-+.+.....+-.+-+..|.++|++.+.
T Consensus 19 ~~La~~~~-~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~ 61 (162)
T 3k69_A 19 LYLDAHRD-SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGT 61 (162)
T ss_dssp HHHHTTTT-SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEE
T ss_pred HHHHhCCC-CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEee
Confidence 34444443 34677777777765667888999999999999874
No 49
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=41.46 E-value=21 Score=28.34 Aligned_cols=56 Identities=11% Similarity=0.144 Sum_probs=34.1
Q ss_pred HhhccCCCCccchhhhhhhhhccCCCChHHHHHHHHcCccccccCCCCeEEEecCC
Q 024264 142 HVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGILTRQLIDPDMYWFAIPN 197 (270)
Q Consensus 142 ~l~~~~~~~si~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~~~~d~~~y~lSiPn 197 (270)
++-.++....++..++.+.+.....+-.+-+..|.++|++.+..+..|-|.++-|-
T Consensus 19 ~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (143)
T 3t8r_A 19 SLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPA 74 (143)
T ss_dssp HHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCG
T ss_pred HHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCc
Confidence 33344443455665666555333345566688999999998754334567776654
No 50
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=40.59 E-value=95 Score=23.30 Aligned_cols=59 Identities=10% Similarity=0.021 Sum_probs=42.6
Q ss_pred CeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 64 PFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 64 PlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
|=++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...|..|+.=.+.+....
T Consensus 49 ~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (140)
T 3hsr_A 49 EKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLA 108 (140)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHH
Confidence 3478888888776 9999999999999999999866555444557788888777776643
No 51
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=40.24 E-value=18 Score=28.70 Aligned_cols=43 Identities=9% Similarity=0.232 Sum_probs=35.2
Q ss_pred eeeehhhhhhcC------CcchHHHHHHHHHhcCceeEEEecCCCCcEE
Q 024264 65 FILQSQLYSSVN------DRTQVDRELESLRRERVLRVFKLNTGQDDHA 107 (270)
Q Consensus 65 lVl~~qLysll~------~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~ 107 (270)
-++...||..+. +++.|=|.|+.|.+.|.|+++..++|...|.
T Consensus 37 ~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 37 HPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFD 85 (145)
T ss_dssp CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEE
T ss_pred CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEE
Confidence 367888888772 7899999999999999999998877654443
No 52
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=39.85 E-value=1e+02 Score=22.90 Aligned_cols=57 Identities=12% Similarity=0.054 Sum_probs=43.4
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.+.|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 48 ~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (145)
T 2a61_A 48 KRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI 105 (145)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 56777776665 9999999999999999999876555444446777888777776543
No 53
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=38.60 E-value=19 Score=28.86 Aligned_cols=42 Identities=17% Similarity=0.260 Sum_probs=33.9
Q ss_pred eeeehhhhhhcC------CcchHHHHHHHHHhcCceeEEEecCCCCcE
Q 024264 65 FILQSQLYSSVN------DRTQVDRELESLRRERVLRVFKLNTGQDDH 106 (270)
Q Consensus 65 lVl~~qLysll~------~~T~VdReL~~L~~~G~lR~f~i~~g~d~~ 106 (270)
-++..+||..+. +++.|=|.|+.|.+.|.|+++.+++|...|
T Consensus 33 h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 80 (150)
T 2w57_A 33 HISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVF 80 (150)
T ss_dssp SEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEE
T ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 367788888762 789999999999999999999887654333
No 54
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=38.27 E-value=18 Score=28.29 Aligned_cols=41 Identities=12% Similarity=0.252 Sum_probs=32.9
Q ss_pred eeehhhhhhc-----C-CcchHHHHHHHHHhcCceeEEEecCCCCcE
Q 024264 66 ILQSQLYSSV-----N-DRTQVDRELESLRRERVLRVFKLNTGQDDH 106 (270)
Q Consensus 66 Vl~~qLysll-----~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~ 106 (270)
++..+||..+ . +++.|=|.|+.|.+.|.|+++..++|...|
T Consensus 35 ~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y 81 (136)
T 1mzb_A 35 MSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVF 81 (136)
T ss_dssp BCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEE
T ss_pred CCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 5677777766 2 789999999999999999999887654444
No 55
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=37.45 E-value=1.4e+02 Score=23.05 Aligned_cols=59 Identities=8% Similarity=0.060 Sum_probs=44.9
Q ss_pred CeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 64 PFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 64 PlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
|=++.++|-..+. +++.|-+-|..|.++|-|.+-.-+.+.-...|..|+.=...+....
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 120 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLE 120 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHH
Confidence 4478888888776 9999999999999999999876665444557778887777776544
No 56
>1yku_A Hypothetical protein PXO2-61; globin fold, unknown function; 1.49A {Bacillus anthracis} PDB: 3pmc_A
Probab=37.34 E-value=24 Score=28.77 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=22.3
Q ss_pred CchHHHHHHHHHHHHHHHHHhccc
Q 024264 197 NIGSVLKGLSQGRKEIISFLNRRK 220 (270)
Q Consensus 197 n~G~flkll~~GR~~ll~~Lkk~k 220 (270)
|.|-|+-+++-||+.+++.+.+..
T Consensus 80 NIgeFVYN~N~GR~~i~~~l~~~~ 103 (136)
T 1yku_A 80 NIAEFIHNTNVAKIEIMNILTLLN 103 (136)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHcchhHHHHHHHHHcCC
Confidence 899999999999999999998854
No 57
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=36.95 E-value=83 Score=22.12 Aligned_cols=57 Identities=16% Similarity=0.140 Sum_probs=40.5
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCC---CCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTG---QDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g---~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++..+|...+. +++.|-|-|..|.+.|.|++..-+.+ .-.+.+..++++...+....
T Consensus 37 ~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~ 97 (109)
T 2d1h_A 37 ITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDL 97 (109)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHH
Confidence 68888888776 99999999999999999998765432 22345556666666555433
No 58
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=36.86 E-value=1.1e+02 Score=22.69 Aligned_cols=59 Identities=12% Similarity=0.137 Sum_probs=46.5
Q ss_pred CCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 63 RPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 63 PPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
+| ++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.-...+....
T Consensus 50 ~~-~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 50 SP-VNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp SE-EEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred CC-cCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 44 68888888776 9999999999999999999876555555567778888777776543
No 59
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=36.58 E-value=1e+02 Score=23.02 Aligned_cols=58 Identities=5% Similarity=-0.027 Sum_probs=47.1
Q ss_pred CCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 63 RPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 63 PPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
|| +.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 50 ~~--~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~ 108 (144)
T 3f3x_A 50 PR--SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEAN 108 (144)
T ss_dssp CE--EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred CC--CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHH
Confidence 55 8888887776 9999999999999999999877666555557888988888877654
No 60
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=36.34 E-value=36 Score=24.30 Aligned_cols=59 Identities=14% Similarity=0.124 Sum_probs=37.8
Q ss_pred HHHHHHhhccCCCCccchhhhhhhhhccCCCChHHHHHHHHcCccccccCCCCeEEEecC
Q 024264 137 EWFQTHVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGILTRQLIDPDMYWFAIP 196 (270)
Q Consensus 137 ~kF~~~l~~~~~~~si~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~~~~d~~~y~lSiP 196 (270)
.+.+.+|..++..-.++..+|-+.+.....--...+..|.+.|++......+ .+|...|
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~-~~W~i~~ 75 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP-PLWKIAV 75 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS-CEEEECC
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC-CceEecC
Confidence 4566777788866667777777776322223345688999999998743233 4555444
No 61
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=36.05 E-value=49 Score=26.31 Aligned_cols=58 Identities=5% Similarity=0.023 Sum_probs=41.1
Q ss_pred eeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 65 FILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 65 lVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
=++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 144 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL 144 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 478888888776 9999999999999999999865444333345677887777766543
No 62
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=35.76 E-value=2.1e+02 Score=24.73 Aligned_cols=106 Identities=13% Similarity=0.163 Sum_probs=68.4
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhc-----CceeEEEecCCCCcEEEEehHHHHHHHHHHHHHhhhhhhch--HHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRE-----RVLRVFKLNTGQDDHAIMFLDDYLNQIECVVKRMEEKKQVN--LEVFE 137 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~-----G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~~~~~~~~~~~--~~~~~ 137 (270)
|+..+|-.++. ++..|+.-|++|.+. .=+....+ .+.|.+.-..+|-..|.+....-....-+. .+++
T Consensus 31 vs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v---~~gy~l~T~~e~~~~v~~~~~~~~~~~Ls~aaLEtL- 106 (219)
T 2z99_A 31 VTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHT---SEGWRMYTRARFAPYVEKLLLDGARTKLTRAALETL- 106 (219)
T ss_dssp BCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEE---TTEEEEEECGGGHHHHHHHHHHHHSCCCCHHHHHHH-
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEE---CCEEEEEEcHHHHHHHHHHhcccccCccCHHHHHHH-
Confidence 88999988886 677899999998752 23444444 457888888999998887542111011111 1122
Q ss_pred HHHHHhhccCCCCccchhhhhhhhhccCCCChHHHHHHHHcCccccc
Q 024264 138 WFQTHVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGILTRQ 184 (270)
Q Consensus 138 kF~~~l~~~~~~~si~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~~ 184 (270)
..+.+ ...|++.++.+.. +.-.+..+..|+..|++...
T Consensus 107 aiIAy------~QPITR~eI~~ir---Gv~~~~~v~~Lle~gLI~e~ 144 (219)
T 2z99_A 107 AVVAY------RQPVTRARVSAVR---GVNVDAVMRTLLARGLITEV 144 (219)
T ss_dssp HHHHH------HCSEEHHHHHHHH---TSCCHHHHHHHHHTTSEEEE
T ss_pred HHHHH------cCCcCHHHHHHHH---CCCHHHHHHHHHHCCCEEEc
Confidence 12221 1567788877765 23347899999999999863
No 63
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=35.07 E-value=24 Score=28.22 Aligned_cols=41 Identities=17% Similarity=0.259 Sum_probs=34.5
Q ss_pred CCeeeehhhhhhcC------CcchHHHHHHHHHhcCceeEEEecCCC
Q 024264 63 RPFILQSQLYSSVN------DRTQVDRELESLRRERVLRVFKLNTGQ 103 (270)
Q Consensus 63 PPlVl~~qLysll~------~~T~VdReL~~L~~~G~lR~f~i~~g~ 103 (270)
+.-++..+||..+. +++.|=|.|+.|.+.|.|+++..++|.
T Consensus 40 ~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~ 86 (150)
T 2xig_A 40 GTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSKSG 86 (150)
T ss_dssp SSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETTTE
T ss_pred CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCCCc
Confidence 33468888988772 789999999999999999999988753
No 64
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=34.35 E-value=41 Score=29.01 Aligned_cols=106 Identities=19% Similarity=0.272 Sum_probs=65.2
Q ss_pred CeeeehhhhhhcC--------CcchHHHHHHHHHhcCc-eeEEEecCCCCcEEEEehHH-----HHHHHHHHHHHhhhhh
Q 024264 64 PFILQSQLYSSVN--------DRTQVDRELESLRRERV-LRVFKLNTGQDDHAIMFLDD-----YLNQIECVVKRMEEKK 129 (270)
Q Consensus 64 PlVl~~qLysll~--------~~T~VdReL~~L~~~G~-lR~f~i~~g~d~~~lV~t~D-----y~~~v~~~~~~~~~~~ 129 (270)
-+++..-||+.++ +|..+.|-++.|..-|. ++.++++.| - .+|.+.+ ..+.|....+
T Consensus 94 G~I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~sg--~-~vvqs~~~~~~~~~~~il~~~~------ 164 (218)
T 3cuq_B 94 GIMSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFDSG--V-MVIELQSHKEEEMVASALETVS------ 164 (218)
T ss_dssp SEEEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECTTS--B-EEEEETTCCGGGGHHHHHHHHH------
T ss_pred CeEEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEECCC--c-EEEEcCCCchHHHHHHHHHHHH------
Confidence 4788888888773 77788888888877554 566666542 3 3333322 2222222111
Q ss_pred hchHHHHHHHHHHhhccCCCCccchhhhhhhhhccCCCChHHHHHHHHcCccccccCCCCeEEEecCCc
Q 024264 130 QVNLEVFEWFQTHVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGILTRQLIDPDMYWFAIPNI 198 (270)
Q Consensus 130 ~~~~~~~~kF~~~l~~~~~~~si~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~~~~d~~~y~lSiPn~ 198 (270)
. ...++..+|.+.+.-......+.+..+++.|+|-+.....+.|| +||.
T Consensus 165 ---------------~---~g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D~~~eg~~y--~pn~ 213 (218)
T 3cuq_B 165 ---------------E---KGSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRDDSVEGLRF--YPNL 213 (218)
T ss_dssp ---------------H---TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEESSSCEEE--EECG
T ss_pred ---------------H---CCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEECCCCceEE--ehhh
Confidence 1 13556666666553333456678999999999998543456777 7775
No 65
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=34.24 E-value=35 Score=24.68 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=32.9
Q ss_pred HHHHHHHHHh------CCccccccCCCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCC
Q 024264 44 LVALRIMRAQ------FPHIDKVSIRPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTG 102 (270)
Q Consensus 44 ~~Al~~lr~~------fP~~~~~~lPPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g 102 (270)
.+.++||++. +| +++..|-..+. ++..|.|-|+.|.++|.|++..=+.|
T Consensus 7 ~~IL~~I~~~i~~~~g~~----------psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ggr~ 62 (77)
T 2jt1_A 7 TKIISIVQERQNMDDGAP----------VKTRDIADAAGLSIYQVRLYLEQLHDVGVLEKVNAGKG 62 (77)
T ss_dssp HHHHHHHHHHHHHHTTSC----------EEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESCSSS
T ss_pred HHHHHHHHHHHhhccCCC----------cCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCCCC
Confidence 4456677776 43 23333433333 67889999999999999999763333
No 66
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=32.99 E-value=52 Score=23.76 Aligned_cols=59 Identities=17% Similarity=0.162 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhccchhHHHHHHHHHhccCCCCCcchhhhhhhccCcceEEEecCceeeEeec
Q 024264 206 SQGRKEIISFLNRRKYKEMMLALLEKKHLRFSPLDMRFHLRDLIGSGHLKTIHTPTGLVVQIS 268 (270)
Q Consensus 206 ~~GR~~ll~~Lkk~kykE~l~~~L~~R~~~~~gl~~~w~L~D~iGaG~Ve~f~TsvG~~vRl~ 268 (270)
...|..|+..|.. +++-..+|.+.- ..+.=.+.+||..+..+|+|+.-...-...++++
T Consensus 22 ~~~r~~Il~~L~~---~~~~~~ela~~l-~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~ 80 (102)
T 3pqk_A 22 HPVRLMLVCTLVE---GEFSVGELEQQI-GIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLT 80 (102)
T ss_dssp SHHHHHHHHHHHT---CCBCHHHHHHHH-TCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEEC
T ss_pred CHHHHHHHHHHHh---CCCCHHHHHHHH-CcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 3578888888864 446667776654 5566689999999999999998654333445554
No 67
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=32.73 E-value=50 Score=23.99 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=36.5
Q ss_pred HHHHHHHhhccCCCCccchhhhhhhhhccCCCChHHHHHHHHcCccccccCCCCeEEEecCCchHH
Q 024264 136 FEWFQTHVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGILTRQLIDPDMYWFAIPNIGSV 201 (270)
Q Consensus 136 ~~kF~~~l~~~~~~~si~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~~~~d~~~y~lSiPn~G~f 201 (270)
-.+.+++|..++....++..+|-+.|...-.--...+..|.+.|++......+ .+|...|-...|
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~-~~W~i~~~~~~~ 76 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP-PLWKIAVSTQAW 76 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSS-CEEEEC------
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC-CeeEEeCcHHhc
Confidence 34555667777755566667777766222122345688999999998743223 466666554443
No 68
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=32.18 E-value=28 Score=24.89 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=33.1
Q ss_pred HHHHHHHHHhCCccccccCCCeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEE
Q 024264 44 LVALRIMRAQFPHIDKVSIRPFILQSQLYSSVN-DRTQVDRELESLRRERVLRVF 97 (270)
Q Consensus 44 ~~Al~~lr~~fP~~~~~~lPPlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f 97 (270)
.+.+.+|+.+=+. -=++..+|-..+. +++.|.|.|..|.++|.|++.
T Consensus 17 ~~IL~~L~~~~~~-------~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~ 64 (77)
T 1qgp_A 17 QRILKFLEELGEG-------KATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 64 (77)
T ss_dssp HHHHHHHHHHCSS-------SCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCCC-------CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 4455666664310 0245666766665 889999999999999999875
No 69
>3qrx_B Melittin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 1bh1_A 2mlt_A
Probab=32.09 E-value=24 Score=20.58 Aligned_cols=24 Identities=42% Similarity=0.764 Sum_probs=21.1
Q ss_pred CchHHHHHHHHHHHHHHHHHhccc
Q 024264 197 NIGSVLKGLSQGRKEIISFLNRRK 220 (270)
Q Consensus 197 n~G~flkll~~GR~~ll~~Lkk~k 220 (270)
|.|.-+|-+..|--.|++.+|+.+
T Consensus 1 giGa~LKVLa~~LP~liSWiK~kr 24 (26)
T 3qrx_B 1 GIGAVLKVLTTGLPALISWIKRKR 24 (26)
T ss_pred CchHHHHHHHccchHHHHHHHHHh
Confidence 578999999999999999998754
No 70
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=31.95 E-value=1.3e+02 Score=20.92 Aligned_cols=57 Identities=12% Similarity=0.219 Sum_probs=41.9
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+.|..|.+.|.|.+...+.+.....+-.++.-...+....
T Consensus 31 ~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~ 88 (100)
T 1ub9_A 31 APFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFL 88 (100)
T ss_dssp EEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHH
Confidence 56677777666 9999999999999999999877654333445666777666655543
No 71
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=31.22 E-value=1.1e+02 Score=23.48 Aligned_cols=33 Identities=15% Similarity=0.168 Sum_probs=29.5
Q ss_pred eeehhhhhhcC-----CcchHHHHHHHHHhcCceeEEE
Q 024264 66 ILQSQLYSSVN-----DRTQVDRELESLRRERVLRVFK 98 (270)
Q Consensus 66 Vl~~qLysll~-----~~T~VdReL~~L~~~G~lR~f~ 98 (270)
++...|...+. +++.|-+-|..|.++|-|++..
T Consensus 25 ~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 25 QTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp EEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred CCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 68888888775 7999999999999999999865
No 72
>3pmd_A Conserved domain protein; globin fold, non-heme globin, sporulation, bacillus anthraci sensor domain, chloride coordination; HET: 11A; 1.76A {Bacillus anthracis}
Probab=30.73 E-value=36 Score=28.19 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=22.4
Q ss_pred CchHHHHHHHHHHHHHHHHHhccc
Q 024264 197 NIGSVLKGLSQGRKEIISFLNRRK 220 (270)
Q Consensus 197 n~G~flkll~~GR~~ll~~Lkk~k 220 (270)
|.|-|+-+++-||+.+++.|.+..
T Consensus 83 NIGdFVYNvNlGR~~i~~~l~~~~ 106 (153)
T 3pmd_A 83 NIADFIYNTNEGKKEILNTLFLLN 106 (153)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHcchhHHHHHHHHHcCC
Confidence 899999999999999999999854
No 73
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=30.59 E-value=44 Score=23.37 Aligned_cols=43 Identities=12% Similarity=0.039 Sum_probs=33.3
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEE
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAI 108 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~l 108 (270)
++...|-..+. +++.|-|-|+.|.+.|.|.+.....|...+..
T Consensus 15 ~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~ 58 (81)
T 2htj_A 15 GKTAEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWF 58 (81)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEE
Confidence 56777777666 89999999999999999987655555555543
No 74
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=30.50 E-value=30 Score=25.20 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=30.3
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEe
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMF 110 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~ 110 (270)
++..+|-..+. +++.|.|.|..|.++|.|++. +....-+.+.-
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~--g~~~~~W~i~~ 71 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE--AGTPPLWKIAV 71 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--SSSSCEEEEC-
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec--CCCCCeeEEeC
Confidence 45566666665 899999999999999999874 33223444443
No 75
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=30.19 E-value=54 Score=27.10 Aligned_cols=109 Identities=14% Similarity=0.279 Sum_probs=68.2
Q ss_pred CCeeeehhhhhhcC---CcchHHHHHHHHHhc-----CceeEEEecCCCCcEEEEehHHHHHHHHHHHHHhhhhhhchHH
Q 024264 63 RPFILQSQLYSSVN---DRTQVDRELESLRRE-----RVLRVFKLNTGQDDHAIMFLDDYLNQIECVVKRMEEKKQVNLE 134 (270)
Q Consensus 63 PPlVl~~qLysll~---~~T~VdReL~~L~~~-----G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~~~~~~~~~~~~~ 134 (270)
.| |+..+|-.++. ++..|+.-|++|.+. .=+....+ .+.|.+.-..+|-..|.+....-....-+ ..
T Consensus 21 ~p-vs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v---~~gy~l~t~~~~~~~v~~~~~~~~~~~LS-~a 95 (162)
T 1t6s_A 21 EP-VNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAI---AGGYRFLTEPEFADLVRQLLAPVIQRRLS-RS 95 (162)
T ss_dssp SC-BCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEE---TTEEEEEECGGGHHHHHHHHSCHHHHHHH-HH
T ss_pred CC-CCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEE---CCEEEEEEcHHHHHHHHHHhcccccCccC-HH
Confidence 45 88888888886 567899999988752 23444445 45788888899999888754210000001 11
Q ss_pred HHHHHHHHhhccCCCCccchhhhhhhhhccCCCChHHHHHHHHcCcccc
Q 024264 135 VFEWFQTHVLDSKLEPSVGHEELCSLLSIVGKVKDEHISLLINAGILTR 183 (270)
Q Consensus 135 ~~~kF~~~l~~~~~~~si~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~ 183 (270)
+++ -+..+- -...|++.++.+.. +.-.+..+..|+..|++..
T Consensus 96 aLE-tLaiIa---y~qPiTR~eI~~ir---Gv~~~~~v~~L~e~glI~e 137 (162)
T 1t6s_A 96 MLE-VLAVVA---WHQPVTKGEIQQIR---GASPDYSIDRLLARGLIEV 137 (162)
T ss_dssp HHH-HHHHHH---HHCSEEHHHHHHHH---TCCCCSHHHHHHHTTSEEE
T ss_pred HHH-HHHHHH---HcCCcCHHHHHHHH---CCCHHHHHHHHHHCCCEEE
Confidence 111 111111 12567788887765 2237789999999999986
No 76
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=29.04 E-value=76 Score=23.85 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=46.2
Q ss_pred CeeeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 64 PFILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 64 PlVl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
|=++.+.|-..+. +++.|-|-|..|.++|-|.+-.-+.+.-...|..|+.=.+.+....
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~ 111 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLL 111 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 4578888888776 8999999999999999999755554444557778888777776654
No 77
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.72 E-value=29 Score=27.55 Aligned_cols=41 Identities=20% Similarity=0.217 Sum_probs=32.8
Q ss_pred eeehhhhhhcC------CcchHHHHHHHHHhcCceeEEEecCCCCcE
Q 024264 66 ILQSQLYSSVN------DRTQVDRELESLRRERVLRVFKLNTGQDDH 106 (270)
Q Consensus 66 Vl~~qLysll~------~~T~VdReL~~L~~~G~lR~f~i~~g~d~~ 106 (270)
++...||..+. +++.|=|.|+.|.+.|.|+++..++|...|
T Consensus 34 ~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~~~~~Y 80 (145)
T 3eyy_A 34 ATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGHGAPTY 80 (145)
T ss_dssp BCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred CCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCCCceEE
Confidence 36777777652 789999999999999999999987654444
No 78
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=27.91 E-value=14 Score=30.52 Aligned_cols=62 Identities=16% Similarity=0.141 Sum_probs=47.3
Q ss_pred cCCchHHHHHH-HHHHHHHHHHHhccchhHHHHHHHHHhccCCCCCcchhhhhhhccCcceEEEec
Q 024264 195 IPNIGSVLKGL-SQGRKEIISFLNRRKYKEMMLALLEKKHLRFSPLDMRFHLRDLIGSGHLKTIHT 259 (270)
Q Consensus 195 iPn~G~flkll-~~GR~~ll~~Lkk~kykE~l~~~L~~R~~~~~gl~~~w~L~D~iGaG~Ve~f~T 259 (270)
+|..-..+|.| .--|-.|+.+|.. +++.-++|-++-...+.=.+.+||.-+..+|+|++..+
T Consensus 10 ~~~~~~~~~~La~P~Rl~il~~L~~---~~~~~~~l~~~l~~~~~~~~s~Hl~~L~~aglv~~~~e 72 (182)
T 4g6q_A 10 MPATSSLVDLLHHPLRWRITQLLIG---RSLTTRELAELLPDVATTTLYRQVGILVKAGVLMVTAE 72 (182)
T ss_dssp CCCSHHHHHHTTSHHHHHHHHHTTT---SCEEHHHHHHHCTTBCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred hHHHHHHHHHhCCHHHHHHHHHHHh---CCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 45555666655 4579999999964 57788888876544444468899999999999999987
No 79
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=27.75 E-value=35 Score=26.92 Aligned_cols=44 Identities=23% Similarity=0.061 Sum_probs=29.6
Q ss_pred chhhhhhhhhccCCCChHHHHHHHHcCccccccCCCCeEEEecCC
Q 024264 153 GHEELCSLLSIVGKVKDEHISLLINAGILTRQLIDPDMYWFAIPN 197 (270)
Q Consensus 153 ~~~~L~~~ls~~~~f~d~eit~LV~aGfLt~~~~d~~~y~lSiPn 197 (270)
+..++-+.+.....+-.+-+..|.++|++.+..+ .|-|.++-|-
T Consensus 25 s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~p 68 (145)
T 1xd7_A 25 SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLKKDP 68 (145)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEESSCG
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceecCCH
Confidence 4444544443333466667899999999998655 6778887763
No 80
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=25.98 E-value=1.4e+02 Score=22.53 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=40.5
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIECVV 122 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~~~~ 122 (270)
++.++|-..+. +++.|-+-|..|.++|-|.+..-+.+.-...+..|+.=...+....
T Consensus 58 ~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 115 (155)
T 3cdh_A 58 MMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLV 115 (155)
T ss_dssp BCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHH
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHH
Confidence 67888887776 9999999999999999999854443333345677887777766543
No 81
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=25.70 E-value=22 Score=24.91 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=30.2
Q ss_pred eeehhhhhhcC-----CcchHHHHHHHHHhcCceeEEEecC
Q 024264 66 ILQSQLYSSVN-----DRTQVDRELESLRRERVLRVFKLNT 101 (270)
Q Consensus 66 Vl~~qLysll~-----~~T~VdReL~~L~~~G~lR~f~i~~ 101 (270)
++...|+..+. +++.|-+-|+.|.++|.|.+..-++
T Consensus 24 ~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr 64 (82)
T 1p6r_A 24 INTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGR 64 (82)
T ss_dssp EEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETT
T ss_pred CCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCC
Confidence 58888888774 6899999999999999999876533
No 82
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=24.03 E-value=47 Score=26.10 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=29.5
Q ss_pred cCCCCCcchhhhhhhccCcceEEEecCceeeEe
Q 024264 234 LRFSPLDMRFHLRDLIGSGHLKTIHTPTGLVVQ 266 (270)
Q Consensus 234 ~~~~gl~~~w~L~D~iGaG~Ve~f~TsvG~~vR 266 (270)
....+-+++|.+.+-.|.=+|+++++-+|..+|
T Consensus 51 ~~~~n~~L~F~vdee~~~~vVkVvD~~TgEVIR 83 (117)
T 2hc5_A 51 LEPSQVHLKFELHDKLNEYYVKVIEDSTNEVIR 83 (117)
T ss_dssp HTTSSCCEEEEEEEETTEEEEEEEETTTTEEEE
T ss_pred HHhcCCceEEEEecCCCcEEEEEEECCCCcEEE
Confidence 344577999999999999999999999999998
No 83
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=22.29 E-value=56 Score=23.66 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=20.4
Q ss_pred ccccc-ccChhhHHHHHHHHHHhCC
Q 024264 32 LSLEE-NLTFSDTLVALRIMRAQFP 55 (270)
Q Consensus 32 ~~l~~-~~~~~Dv~~Al~~lr~~fP 55 (270)
..+.+ .|+-.|+...+.||+++||
T Consensus 75 P~~~~~~Lsd~ei~~l~~Yi~~~~p 99 (99)
T 3dp5_A 75 PAFGEAMIPPADALKIGEYVVASFP 99 (99)
T ss_dssp CCCCTTTSCHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCc
Confidence 44555 7899999999999999998
No 84
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=22.26 E-value=47 Score=26.91 Aligned_cols=43 Identities=14% Similarity=0.232 Sum_probs=30.5
Q ss_pred CeeeehhhhhhcC--------CcchHHHHHHHHHhcCceeEEEecCCCCcE
Q 024264 64 PFILQSQLYSSVN--------DRTQVDRELESLRRERVLRVFKLNTGQDDH 106 (270)
Q Consensus 64 PlVl~~qLysll~--------~~T~VdReL~~L~~~G~lR~f~i~~g~d~~ 106 (270)
.-++...||..+. +++.|=|.|+.|.+.|.|+++.++.|...|
T Consensus 47 ~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~~~~~~~Y 97 (162)
T 4ets_A 47 THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKY 97 (162)
T ss_dssp SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-----CCE
T ss_pred CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 3457788887552 678999999999999999998877654444
No 85
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=21.45 E-value=2.1e+02 Score=19.78 Aligned_cols=51 Identities=14% Similarity=0.172 Sum_probs=36.9
Q ss_pred eeehhhhhhcC-CcchHHHHHHHHHhcCceeEEEecCCCCcEEEEehHHHHHHHH
Q 024264 66 ILQSQLYSSVN-DRTQVDRELESLRRERVLRVFKLNTGQDDHAIMFLDDYLNQIE 119 (270)
Q Consensus 66 Vl~~qLysll~-~~T~VdReL~~L~~~G~lR~f~i~~g~d~~~lV~t~Dy~~~v~ 119 (270)
++..+|-..+. +++.|-+-|..|.+.|.|.+.. .|. ...+..+++....+.
T Consensus 39 ~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~--~~r-~~~y~l~~~~~~~l~ 90 (99)
T 3cuo_A 39 TSAGELTRITGLSASATSQHLARMRDEGLIDSQR--DAQ-RILYSIKNEAVNAII 90 (99)
T ss_dssp EEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEE--CSS-CEEEEECCHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe--cCC-EEEEEEChHHHHHHH
Confidence 57888888776 9999999999999999999865 222 334445655544443
No 86
>3rnv_A HC-Pro, helper component proteinase; cysteine protease, proteolysis, hydrolase; 2.00A {Turnip mosaic virus}
Probab=20.41 E-value=66 Score=26.75 Aligned_cols=38 Identities=13% Similarity=0.229 Sum_probs=28.3
Q ss_pred cccccccChhhHHHHHHHHHHhCCccccccCCCeeeehh
Q 024264 32 LSLEENLTFSDTLVALRIMRAQFPHIDKVSIRPFILQSQ 70 (270)
Q Consensus 32 ~~l~~~~~~~Dv~~Al~~lr~~fP~~~~~~lPPlVl~~q 70 (270)
..|.+==++.||..|+.+|...||....+-+|+|. ++|
T Consensus 74 ~~LG~WPt~~dvatac~~l~~~~P~~~~AelP~IL-VDH 111 (158)
T 3rnv_A 74 GELGKWPTLLDVATACYFLKVFYPDVANAELPRML-VDH 111 (158)
T ss_dssp HHHCSSCBHHHHHHHHHHHHHHSGGGGGCBCCEEE-EET
T ss_pred HHhCCCCCHHHHHHHHHHHHHhCccccCCCCCcEE-EcC
Confidence 44455558899999999999999987666666554 444
Done!