BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>024266
MEHKHGKAYSNILKLLPKSSVVNFQNPLYSPGREKRSDPHHHHHHMNKTKTHIGKGFSGP
MMSMSLVPADARTRNLKNNNHQSLANQEPTSPKISCMGQIKHKHKQRQKFDKAKSFSVAK
EEKRNTSKVFSPKQAKKHPSMLKRMFTMSKSTAARKSFDQADNHDERRSLPDRAPGLSQM
KRFASGRDAFSSFDWTAQQIAPETDRGAYYSYEERGDSDEEQDEDRVIIPFSAPIAVVKG
VALQPRKEVNLWKRRPMNPPAPLQLNSTLS

High Scoring Gene Products

Symbol, full name Information P value
AT1G76070 protein from Arabidopsis thaliana 7.4e-34
AT1G20310 protein from Arabidopsis thaliana 1.5e-12

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  024266
        (270 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2199762 - symbol:AT1G76070 "AT1G76070" species...   368  7.4e-34   1
TAIR|locus:2012948 - symbol:AT1G20310 "AT1G20310" species...   173  1.5e-12   1


>TAIR|locus:2199762 [details] [associations]
            symbol:AT1G76070 "AT1G76070" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0010200 "response to chitin" evidence=RCA] [GO:0050832 "defense
            response to fungus" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005886 EMBL:AC007396 EMBL:AC009978
            EMBL:BT003120 EMBL:AY087903 EMBL:AK228131 IPI:IPI00548935
            RefSeq:NP_565125.1 UniGene:At.34705 STRING:Q9SGS5 PRIDE:Q9SGS5
            EnsemblPlants:AT1G76070.1 GeneID:843939 KEGG:ath:AT1G76070
            TAIR:At1g76070 eggNOG:NOG259217 HOGENOM:HOG000148644
            InParanoid:Q9SGS5 OMA:SFNHRNA PhylomeDB:Q9SGS5
            ProtClustDB:CLSN2714719 Genevestigator:Q9SGS5 Uniprot:Q9SGS5
        Length = 272

 Score = 368 (134.6 bits), Expect = 7.4e-34, P = 7.4e-34
 Identities = 106/278 (38%), Positives = 144/278 (51%)

Query:     7 KAYSNILKLLPKSSVVNFQNPLYSPGREKRSDPXXXXXXMNKTKTHIGKGFSGPMMSMSL 66
             K  + +LK+LPK+     + P +SPGR+   +        NK        FSGPM+   L
Sbjct:    13 KNKNKLLKMLPKAMSFGHRVPPFSPGRDLHHNNHHNYTAANKMF------FSGPMVP--L 64

Query:    67 VPADARTRNLKNNNHQSLANQEPTSPKISCMGQIK-HKHK-QRQKFDKAKSFSVAKEEKR 124
             VP  AR R     N       EPTSPK+SC+GQIK  K K    K +KA S  + K  K 
Sbjct:    65 VPNAARVRR----NKSDAVWDEPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSLIPKISKT 120

Query:   125 NTSKVFSPKQAKKHPSMLKRMFTMSKSTA---ARKSF----DQADNHDERRSLPDRAPGL 177
             +TS + + +  K   S +K +F+ S ++    +RKS       AD H          P L
Sbjct:   121 STSSL-TKEDEKGRLSKIKSIFSFSPASGRNTSRKSHPTAVSAADEHPVTVVSTAAVPSL 179

Query:   178 SQMKRFASGRDAFSSFDWTAQ----QIAPETDRGAYYSYEE-RGDS---DEEQDEDRVII 229
              QMK+FAS RDA   FDW  +    + +P      YYS ++ RG     D+++DED +II
Sbjct:   180 GQMKKFASSRDALGDFDWAVEMKHEEESPADHHRGYYSDDDTRGAYLRYDDDEDEDDIII 239

Query:   230 PFSAPIAVVKGVALQPRKEVNLWKRRPMNPPAPLQLNS 267
             PFSAP+       L+P+KEVNLWKRR M+PP PL L +
Sbjct:   240 PFSAPLG------LKPKKEVNLWKRRTMDPPKPLHLQT 271


>TAIR|locus:2012948 [details] [associations]
            symbol:AT1G20310 "AT1G20310" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0006612 "protein targeting to
            membrane" evidence=RCA] [GO:0009693 "ethylene biosynthetic process"
            evidence=RCA] [GO:0009863 "salicylic acid mediated signaling
            pathway" evidence=RCA] [GO:0009867 "jasmonic acid mediated
            signaling pathway" evidence=RCA] [GO:0010363 "regulation of
            plant-type hypersensitive response" evidence=RCA] EMBL:CP002684
            ProtClustDB:CLSN2714719 EMBL:AY088626 IPI:IPI00531039
            RefSeq:NP_564111.1 UniGene:At.41715 ProteinModelPortal:Q8L956
            STRING:Q8L956 PRIDE:Q8L956 EnsemblPlants:AT1G20310.1 GeneID:838619
            KEGG:ath:AT1G20310 TAIR:At1g20310 eggNOG:NOG329825
            InParanoid:Q8L956 OMA:GHSAAPF PhylomeDB:Q8L956
            Genevestigator:Q8L956 Uniprot:Q8L956
        Length = 240

 Score = 173 (66.0 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 57/156 (36%), Positives = 79/156 (50%)

Query:    59 GPMMSMSLVPADARTRNLKNNNHQSLANQEPTSPKISCMGQIK-HKHKQRQKFDKA-KSF 116
             G   S  LVP  AR R  +N  ++++   EPTSPK+SC+GQ+K  + K  +K +KA K+ 
Sbjct:    48 GIFFSSPLVPTAARVR--RNTKYEAVF-AEPTSPKVSCIGQVKLARPKCPEKKNKAPKNL 104

Query:   117 SVAKEEKRNTSKVFSPKQAKKHPSMLKRMFTMSKSTAARKSFDQADNHDERRSLP----D 172
               A     + S     ++     S LKR+F+M +S  +RKS   A      R  P    D
Sbjct:   105 KTAS----SLSSCVIKEEDNGSFSKLKRIFSM-RSYPSRKSNSTAFAAAAAREHPIAEVD 159

Query:   173 R---APGLSQMKRFASGRDAFSSFDWTAQQIAPETD 205
                 AP L  MK+FAS R+A   FDWT Q    + D
Sbjct:   160 AVTAAPSLGAMKKFASSREALGGFDWTVQMKREKED 195


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.313   0.126   0.363    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      270       264   0.00092  114 3  11 23  0.39    34
                                                     32  0.50    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  191 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  26.89u 0.15s 27.04t   Elapsed:  00:00:02
  Total cpu time:  26.89u 0.15s 27.04t   Elapsed:  00:00:02
  Start:  Thu May  9 21:09:06 2013   End:  Thu May  9 21:09:08 2013

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