BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024266
         (270 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SGS5|Y1607_ARATH Uncharacterized protein At1g76070 OS=Arabidopsis thaliana
           GN=At1g76070 PE=1 SV=1
          Length = 272

 Score =  120 bits (300), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/270 (38%), Positives = 139/270 (51%), Gaps = 36/270 (13%)

Query: 15  LLPKSSVVNFQNPLYSPGREKRSDPHHHHHHMNKTKTHIGKGFSGPMMSMSLVPADARTR 74
           +LPK+     + P +SPGR+   + HH++   NK        FSGPM+   LVP  AR R
Sbjct: 21  MLPKAMSFGHRVPPFSPGRDLHHNNHHNYTAANKM------FFSGPMVP--LVPNAARVR 72

Query: 75  NLKNNNHQSLANQEPTSPKISCMGQIKHKHKQ--RQKFDKAKSFSVAKEEKRNTSKVFSP 132
                N       EPTSPK+SC+GQIK    +    K +KA S  + K  K +TS + + 
Sbjct: 73  R----NKSDAVWDEPTSPKVSCIGQIKLGKSKCPTGKKNKAPSSLIPKISKTSTSSL-TK 127

Query: 133 KQAKKHPSMLKRMFTMSKSTA---ARKS----FDQADNHDERRSLPDRAPGLSQMKRFAS 185
           +  K   S +K +F+ S ++    +RKS       AD H          P L QMK+FAS
Sbjct: 128 EDEKGRLSKIKSIFSFSPASGRNTSRKSHPTAVSAADEHPVTVVSTAAVPSLGQMKKFAS 187

Query: 186 GRDAFSSFDWTAQQIAPETD-----RGAYYSYEERGDS---DEEQDEDRVIIPFSAPIAV 237
            RDA   FDW  +    E       RG Y   + RG     D+++DED +IIPFSAP+  
Sbjct: 188 SRDALGDFDWAVEMKHEEESPADHHRGYYSDDDTRGAYLRYDDDEDEDDIIIPFSAPLG- 246

Query: 238 VKGVALQPRKEVNLWKRRPMNPPAPLQLNS 267
                L+P+KEVNLWKRR M+PP PL L +
Sbjct: 247 -----LKPKKEVNLWKRRTMDPPKPLHLQT 271


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.127    0.370 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100,706,755
Number of Sequences: 539616
Number of extensions: 4032162
Number of successful extensions: 13689
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 13512
Number of HSP's gapped (non-prelim): 158
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)