Query 024266
Match_columns 270
No_of_seqs 48 out of 50
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 05:16:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024266.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024266hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wwy_A Thioredoxin-like protei 22.9 49 0.0017 28.0 2.7 37 217-255 44-86 (171)
2 1xoy_A Hypothetical protein AT 17.3 51 0.0017 27.6 1.6 29 227-256 62-95 (161)
3 2aff_B MKI67 FHA domain intera 15.1 53 0.0018 22.8 1.0 10 220-230 30-39 (44)
4 3bbo_F Ribosomal protein L3; l 10.7 6.3E+02 0.021 22.8 6.9 45 17-61 118-166 (259)
5 4e05_I Salivary anti-thrombin 7.8 85 0.0029 23.0 0.0 18 218-235 12-29 (61)
6 1nsj_A PRAI, phosphoribosyl an 7.2 1.7E+02 0.0057 24.8 1.5 13 232-244 151-163 (205)
7 2cws_A Alginate lyase A1-II'; 6.7 1.4E+02 0.0048 26.2 0.8 14 88-102 100-113 (237)
8 4aaj_A N-(5'-phosphoribosyl)an 6.2 90 0.0031 27.1 -0.6 12 233-244 174-185 (228)
9 1x0h_A P195, RAS GTPase-activa 6.1 1.1E+02 0.0038 24.2 -0.1 16 184-200 2-17 (112)
10 1wq6_A AML1-ETO; NHR2, oncopro 5.9 71 0.0024 24.2 -1.3 11 245-255 54-64 (72)
No 1
>1wwy_A Thioredoxin-like protein 1; structural genomics, hypothetical protein, regulatory protei apoptosis, cancer; NMR {Homo sapiens}
Probab=22.87 E-value=49 Score=28.05 Aligned_cols=37 Identities=19% Similarity=0.332 Sum_probs=23.4
Q ss_pred CCCccccccceeeecccce-----ecccC-ccCCcccchhccccC
Q 024266 217 DSDEEQDEDRVIIPFSAPI-----AVVKG-VALQPRKEVNLWKRR 255 (270)
Q Consensus 217 ~~d~de~ee~~iipfSAPl-----~~~gg-v~~~PRKEVNLWkRR 255 (270)
+||.|| +=-+.|||..++ +|.|+ -..-| |.|-||+-|
T Consensus 44 eSD~De-QLli~IPFt~~VKl~Si~i~~~~~~~~P-k~iKlf~N~ 86 (171)
T 1wwy_A 44 ESDCDE-QLLITVAFNQPVKLYSMKFQGPDNGQGP-KYVKIFINL 86 (171)
T ss_dssp CCSSCS-CCEEEEEEEEEEEEEEEEECCCSSSCCB-CEEEEEESC
T ss_pred cCCCCc-eEEEEeecCCcEEEEEEEEECCCCCCCC-cEEEEeecC
Confidence 344433 223668999984 33333 33567 889999998
No 2
>1xoy_A Hypothetical protein AT3G04780.1; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Arabidopsis thaliana} SCOP: b.18.1.26
Probab=17.35 E-value=51 Score=27.59 Aligned_cols=29 Identities=28% Similarity=0.488 Sum_probs=20.9
Q ss_pred eeeecccce-----ecccCccCCcccchhccccCC
Q 024266 227 VIIPFSAPI-----AVVKGVALQPRKEVNLWKRRP 256 (270)
Q Consensus 227 ~iipfSAPl-----~~~ggv~~~PRKEVNLWkRRt 256 (270)
+.|||..++ +|.|+-..-| |.|-||+-|+
T Consensus 62 i~IPFt~~VKl~Si~i~~~~~~~P-k~iKlf~N~~ 95 (161)
T 1xoy_A 62 IYIPFNQVIKLHSFAIKGPEEEGP-KTVKFFSNKE 95 (161)
T ss_dssp EEEEEEEEECEEEEEEECCTTTSE-EEEEEEESCS
T ss_pred EEeecCCcEEEEEEEEECCCCCCC-cEEEEeeCCC
Confidence 568999974 3444434667 8899999876
No 3
>2aff_B MKI67 FHA domain interacting nucleolar phosphoPro; NIFK, , phosphoprotein, cell cycle; HET: SEP TPO; NMR {Homo sapiens}
Probab=15.08 E-value=53 Score=22.82 Aligned_cols=10 Identities=10% Similarity=0.787 Sum_probs=5.6
Q ss_pred ccccccceeee
Q 024266 220 EEQDEDRVIIP 230 (270)
Q Consensus 220 ~de~ee~~iip 230 (270)
+|+|+| ||+=
T Consensus 30 Dd~D~E-IvfK 39 (44)
T 2aff_B 30 DDKDDE-IVFK 39 (44)
T ss_dssp GGGSCS-EEES
T ss_pred CCccce-EEee
Confidence 445566 7653
No 4
>3bbo_F Ribosomal protein L3; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=10.68 E-value=6.3e+02 Score=22.82 Aligned_cols=45 Identities=20% Similarity=0.331 Sum_probs=23.0
Q ss_pred cccccccccCC---CCCCCCCCCCCC-CCCCccccccccccCCCccCCc
Q 024266 17 PKSSVVNFQNP---LYSPGREKRSDP-HHHHHHMNKTKTHIGKGFSGPM 61 (270)
Q Consensus 17 pKa~sv~fqnp---pfSPgRd~k~~~-~~~~~~~~~~~~~~~kgfsgP~ 61 (270)
||+-..-|+.- -|-+|....... ...............+||.|.|
T Consensus 118 ~kr~l~Efrv~~~~~~~~G~~i~v~~vF~~Gq~VDV~G~TKGKGFqGv~ 166 (259)
T 3bbo_F 118 PLRHLQEFRLQSIDGFEVTQKLDFGELFKEGDLVDVSGTTIGKGFQGGI 166 (259)
T ss_dssp CSSCCCCCCSCCCCTTTTCCCCSSCSSSCSSSCCCCCCBCCCCSSCCSS
T ss_pred CCcEEEEEecCChhhcccccEeehhheecCCCEEEEEEEecCCcceeee
Confidence 44444556632 266666554332 2222222233455568899999
No 5
>4e05_I Salivary anti-thrombin peptide anophelin; hydrolase-hydrolase inhibitor complex; HET: NAG; 2.30A {Anopheles albimanus} PDB: 4e06_I*
Probab=7.79 E-value=85 Score=23.04 Aligned_cols=18 Identities=22% Similarity=0.423 Sum_probs=0.0
Q ss_pred CCccccccceeeecccce
Q 024266 218 SDEEQDEDRVIIPFSAPI 235 (270)
Q Consensus 218 ~d~de~ee~~iipfSAPl 235 (270)
+|+|+++++-++|+|.-+
T Consensus 12 YDEdd~d~e~l~phsss~ 29 (61)
T 4e05_I 12 YDEDTDDSDKLVENDTSI 29 (61)
T ss_dssp ------------------
T ss_pred cccccCcccccccCCCCC
Confidence 344444444778877654
No 6
>1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A
Probab=7.18 E-value=1.7e+02 Score=24.83 Aligned_cols=13 Identities=8% Similarity=0.095 Sum_probs=10.0
Q ss_pred ccceecccCccCC
Q 024266 232 SAPIAVVKGVALQ 244 (270)
Q Consensus 232 SAPl~~~ggv~~~ 244 (270)
..|++|.||++.+
T Consensus 151 ~~p~~LAGGL~pe 163 (205)
T 1nsj_A 151 FRYLVLSGGLNPE 163 (205)
T ss_dssp SSCEEEESSCCTT
T ss_pred CCcEEEECCCCHH
Confidence 3589999998654
No 7
>2cws_A Alginate lyase A1-II'; polysaccharide lyase family-7; HET: SO4; 1.00A {Sphingomonas SP} PDB: 2z42_A 2zac_A* 2zab_A* 2zaa_A* 2za9_A
Probab=6.68 E-value=1.4e+02 Score=26.18 Aligned_cols=14 Identities=43% Similarity=0.501 Sum_probs=11.1
Q ss_pred CCCCCceeeecchhh
Q 024266 88 EPTSPKISCMGQIKH 102 (270)
Q Consensus 88 EPtSPKVSCiGQVK~ 102 (270)
=|++.|| |||||--
T Consensus 100 vp~~gkV-vIgQIH~ 113 (237)
T 2cws_A 100 LPSSGKI-IVAQIHG 113 (237)
T ss_dssp CCTTCCE-EEEEEEE
T ss_pred cCCCCCE-EEEEEec
Confidence 5778888 9999953
No 8
>4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus}
Probab=6.24 E-value=90 Score=27.10 Aligned_cols=12 Identities=25% Similarity=0.559 Sum_probs=9.4
Q ss_pred cceecccCccCC
Q 024266 233 APIAVVKGVALQ 244 (270)
Q Consensus 233 APl~~~ggv~~~ 244 (270)
.|++|.||++.+
T Consensus 174 ~p~iLAGGL~pe 185 (228)
T 4aaj_A 174 IPVIVAGGLNAE 185 (228)
T ss_dssp SCEEEESSCCTT
T ss_pred CCeEEECCCCHH
Confidence 588999998654
No 9
>1x0h_A P195, RAS GTPase-activating-like protein iqgap1; cell adhesion, beta-sandwich, protein-protein interaction, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.332.1.1
Probab=6.10 E-value=1.1e+02 Score=24.17 Aligned_cols=16 Identities=31% Similarity=0.451 Sum_probs=14.0
Q ss_pred ccccccccccccccccc
Q 024266 184 ASGRDAFSSFDWTAQQI 200 (270)
Q Consensus 184 aSGR~af~dFDWk~~qv 200 (270)
+||| .|+.|-|++.|.
T Consensus 2 ~~~~-kfgs~KySa~~L 17 (112)
T 1x0h_A 2 SSGS-SGISLKYTAARL 17 (112)
T ss_dssp CSCC-CCCCEEEEHHHH
T ss_pred CCcc-ccCCEEEcHHHH
Confidence 5899 999999999765
No 10
>1wq6_A AML1-ETO; NHR2, oncoprotein; 2.00A {Homo sapiens}
Probab=5.89 E-value=71 Score=24.19 Aligned_cols=11 Identities=55% Similarity=1.087 Sum_probs=8.4
Q ss_pred cccchhccccC
Q 024266 245 PRKEVNLWKRR 255 (270)
Q Consensus 245 PRKEVNLWkRR 255 (270)
-|.|.|-|.||
T Consensus 54 dReeln~W~Rr 64 (72)
T 1wq6_A 54 DREELNYWIRR 64 (72)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 37788888876
Done!