Query 024266
Match_columns 270
No_of_seqs 48 out of 50
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 05:16:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024266.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/024266hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1xoya_ b.18.1.26 (A:) Hypothe 13.6 32 0.0023 26.9 1.4 29 227-256 62-95 (161)
2 d1vk3a2 d.79.4.1 (A:346-507) P 7.4 50 0.0037 25.5 0.5 16 89-104 146-161 (162)
3 d1c01a_ b.11.1.5 (A:) Plant an 7.1 63 0.0046 22.6 0.8 17 181-197 55-71 (76)
4 d1dcea2 b.7.4.1 (A:242-350) Ra 7.0 76 0.0055 23.8 1.3 17 224-240 13-29 (109)
5 d2voua1 c.3.1.2 (A:2-163,A:292 6.3 83 0.0061 23.1 1.2 10 89-98 2-11 (265)
6 d1fltx_ b.1.1.4 (X:) Second do 5.5 1.1E+02 0.0079 21.4 1.4 21 224-254 21-41 (95)
7 d1ylla1 b.82.1.17 (A:2-196) Hy 5.0 92 0.0067 24.9 0.7 18 190-208 34-51 (195)
8 d2o3aa1 c.116.1.8 (A:1-167) Un 4.9 1E+02 0.0076 24.5 1.0 10 241-250 122-131 (167)
9 d1vava_ b.29.1.18 (A:) Alginat 4.7 1E+02 0.0074 24.6 0.8 17 85-102 88-104 (222)
10 d1nsja_ c.1.2.4 (A:) N-(5'phos 4.5 1.4E+02 0.01 22.6 1.5 13 232-244 151-163 (205)
No 1
>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=13.56 E-value=32 Score=26.89 Aligned_cols=29 Identities=24% Similarity=0.456 Sum_probs=19.4
Q ss_pred eeeeccccee-----cccCccCCcccchhccccCC
Q 024266 227 VIIPFSAPIA-----VVKGVALQPRKEVNLWKRRP 256 (270)
Q Consensus 227 ~iipfSAPl~-----~~ggv~~~PRKEVNLWkRRt 256 (270)
+.|||..++= |.|.=..-| |.|.||.-|+
T Consensus 62 i~IpF~~~Vkl~si~i~~~~~~~P-k~iklf~N~~ 95 (161)
T d1xoya_ 62 IYIPFNQVIKLHSFAIKGPEEEGP-KTVKFFSNKE 95 (161)
T ss_dssp EEEEEEEEECEEEEEEECCTTTSE-EEEEEEESCS
T ss_pred EEeecCCceEEEEEEEeCCCCCCC-cEEEEEeCCC
Confidence 5589998843 333334457 7999999874
No 2
>d1vk3a2 d.79.4.1 (A:346-507) Phosphoribosylformylglycinamidine synthase II, domains 1 and 3 {Thermotoga maritima [TaxId: 2336]}
Probab=7.45 E-value=50 Score=25.45 Aligned_cols=16 Identities=13% Similarity=0.492 Sum_probs=12.8
Q ss_pred CCCCceeeecchhhhh
Q 024266 89 PTSPKISCMGQIKHKH 104 (270)
Q Consensus 89 PtSPKVSCiGQVK~kk 104 (270)
|-+|-|+|||.|..+|
T Consensus 146 ~PTp~i~~~G~v~~~k 161 (162)
T d1vk3a2 146 PPTLVVGMLGKVNPQK 161 (162)
T ss_dssp CCEEEEEEEEEECGGG
T ss_pred CCccEEEEEEeeccCc
Confidence 5589999999996543
No 3
>d1c01a_ b.11.1.5 (A:) Plant antimicrobial protein MIAMP1 {Macadamia nut (Macadamia integrifolia) [TaxId: 60698]}
Probab=7.11 E-value=63 Score=22.63 Aligned_cols=17 Identities=35% Similarity=0.772 Sum_probs=15.4
Q ss_pred hhhcccccccccccccc
Q 024266 181 KRFASGRDAFSSFDWTA 197 (270)
Q Consensus 181 KRFaSGR~af~dFDWk~ 197 (270)
.||.|+-.+-+.|-||.
T Consensus 55 trfgs~~qacs~fgwks 71 (76)
T d1c01a_ 55 TRFGSSARACNPFGWKS 71 (76)
T ss_dssp EEESSCCCBCSCCCCSE
T ss_pred cccccccccccCCCcee
Confidence 58999999999999996
No 4
>d1dcea2 b.7.4.1 (A:242-350) Rab geranylgeranyltransferase alpha-subunit, insert domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=6.97 E-value=76 Score=23.82 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.8
Q ss_pred ccceeeecccceecccC
Q 024266 224 EDRVIIPFSAPIAVVKG 240 (270)
Q Consensus 224 ee~~iipfSAPl~~~gg 240 (270)
|+++.+.||-||.+|.|
T Consensus 13 e~~l~v~FSrpv~v~~~ 29 (109)
T d1dcea2 13 EACLSVCFSRPLTVGSR 29 (109)
T ss_dssp TTEEEEEEEEEECTTBT
T ss_pred cCeEEEEeccceecccc
Confidence 67799999999998765
No 5
>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}
Probab=6.26 E-value=83 Score=23.06 Aligned_cols=10 Identities=40% Similarity=0.896 Sum_probs=9.1
Q ss_pred CCCCceeeec
Q 024266 89 PTSPKISCMG 98 (270)
Q Consensus 89 PtSPKVSCiG 98 (270)
||++||=+||
T Consensus 2 ~~~~kV~IiG 11 (265)
T d2voua1 2 PTTDRIAVVG 11 (265)
T ss_dssp CCCSEEEEEC
T ss_pred CCCCcEEEEC
Confidence 8999999998
No 6
>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.51 E-value=1.1e+02 Score=21.38 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=14.5
Q ss_pred ccceeeecccceecccCccCCcccchhcccc
Q 024266 224 EDRVIIPFSAPIAVVKGVALQPRKEVNLWKR 254 (270)
Q Consensus 224 ee~~iipfSAPl~~~ggv~~~PRKEVNLWkR 254 (270)
+| ++|||-+= -|--+|.||+.
T Consensus 21 ~~-~vIPC~vT---------~P~~~VtL~~~ 41 (95)
T d1fltx_ 21 RE-LVIPCRVT---------SPNITVTLKKF 41 (95)
T ss_dssp SC-EEECCCBS---------CTTSCCEEEET
T ss_pred CC-EEEEccCC---------CCCceeEEEec
Confidence 55 99998653 35567888853
No 7
>d1ylla1 b.82.1.17 (A:2-196) Hypothetical protein PA5104 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.96 E-value=92 Score=24.92 Aligned_cols=18 Identities=28% Similarity=0.654 Sum_probs=13.8
Q ss_pred cccccccccccccccccCc
Q 024266 190 FSSFDWTAQQIAPETDRGA 208 (270)
Q Consensus 190 f~dFDWk~~qvap~e~~~~ 208 (270)
..||||+. -||..+.+..
T Consensus 34 ~~~f~wRi-SiA~V~~~gp 51 (195)
T d1ylla1 34 LDGFGWRL-SIADVGESGG 51 (195)
T ss_dssp GGSCSEEE-EEEEECSCEE
T ss_pred cCCceEEE-EEeEecCCCC
Confidence 46999999 4888776555
No 8
>d2o3aa1 c.116.1.8 (A:1-167) Uncharacterized protein AF0751 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=4.92 E-value=1e+02 Score=24.49 Aligned_cols=10 Identities=40% Similarity=0.667 Sum_probs=7.9
Q ss_pred ccCCcccchh
Q 024266 241 VALQPRKEVN 250 (270)
Q Consensus 241 v~~~PRKEVN 250 (270)
|.-||+.||-
T Consensus 122 VgNQPHSEVA 131 (167)
T d2o3aa1 122 IGTQPHSEVA 131 (167)
T ss_dssp SSSSCCCHHH
T ss_pred cCCCCcHHHH
Confidence 4689999984
No 9
>d1vava_ b.29.1.18 (A:) Alginate lyase PA1167 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=4.72 E-value=1e+02 Score=24.62 Aligned_cols=17 Identities=24% Similarity=0.550 Sum_probs=12.5
Q ss_pred CCCCCCCCceeeecchhh
Q 024266 85 ANQEPTSPKISCMGQIKH 102 (270)
Q Consensus 85 ~~~EPtSPKVSCiGQVK~ 102 (270)
+.+-|++-|| |||||-.
T Consensus 88 V~~v~~~~kV-vIgQIH~ 104 (222)
T d1vava_ 88 IEAVPSTRRM-IIGQIHS 104 (222)
T ss_dssp EEECCTTCEE-EEEEEEE
T ss_pred EeccCCCCCE-EEEEEee
Confidence 3445888887 8899954
No 10
>d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]}
Probab=4.45 E-value=1.4e+02 Score=22.64 Aligned_cols=13 Identities=8% Similarity=0.095 Sum_probs=9.1
Q ss_pred ccceecccCccCC
Q 024266 232 SAPIAVVKGVALQ 244 (270)
Q Consensus 232 SAPl~~~ggv~~~ 244 (270)
.-|++|.||++.+
T Consensus 151 ~~~~~LAGGl~~~ 163 (205)
T d1nsja_ 151 FRYLVLSGGLNPE 163 (205)
T ss_dssp SSCEEEESSCCTT
T ss_pred ccceeeecCCCHH
Confidence 3478889997543
Done!