Your job contains 1 sequence.
>024267
MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED
AIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGIS
RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIR
KLDDTEFRNPWARGRITVKRYDRSPSRSRSRSRSRSRSRSRIVRRNRSKSLERSVSRSVS
RSMSASPVKSSRARSRSRSVSPDKVRSGSG
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024267
(270 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2114643 - symbol:SR34a "Serine/Arginine-Rich P... 403 4.6e-76 2
TAIR|locus:2024770 - symbol:SR34 "Serine/Arginine-Rich Pr... 331 9.9e-60 2
TAIR|locus:2195346 - symbol:SR30 "Serine/Arginine-Rich Pr... 348 1.3e-59 2
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 326 2.3e-56 2
WB|WBGene00004700 - symbol:rsp-3 species:6239 "Caenorhabd... 244 2.3e-44 2
UNIPROTKB|Q9NEW6 - symbol:rsp-3 "Probable splicing factor... 244 2.3e-44 2
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 240 5.9e-44 2
UNIPROTKB|Q5ZML3 - symbol:SRSF1 "Serine/arginine-rich spl... 240 7.6e-44 2
ZFIN|ZDB-GENE-040426-1950 - symbol:srsf1a "serine/arginin... 240 2.5e-43 2
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 239 8.5e-43 2
UNIPROTKB|E2RJL3 - symbol:SRSF1 "Uncharacterized protein"... 239 8.5e-43 2
UNIPROTKB|J3KTL2 - symbol:SRSF1 "Serine/arginine-rich-spl... 239 8.5e-43 2
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 239 8.5e-43 2
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 239 8.5e-43 2
UNIPROTKB|Q5R7H2 - symbol:SRSF1 "Serine/arginine-rich spl... 239 8.5e-43 2
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 239 8.5e-43 2
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 239 8.5e-43 2
MGI|MGI:104896 - symbol:Srsf9 "serine/arginine-rich splic... 232 3.6e-42 2
ZFIN|ZDB-GENE-040426-2397 - symbol:srsf9 "serine/arginine... 238 7.5e-42 2
UNIPROTKB|E2RK20 - symbol:SRSF9 "Uncharacterized protein"... 231 7.5e-42 2
UNIPROTKB|Q13242 - symbol:SRSF9 "Serine/arginine-rich spl... 231 7.5e-42 2
UNIPROTKB|F1RJJ0 - symbol:SRSF9 "Uncharacterized protein"... 231 7.5e-42 2
RGD|1309495 - symbol:Srsf9 "serine/arginine-rich splicing... 231 7.5e-42 2
UNIPROTKB|A4FUC6 - symbol:SFRS9 "Uncharacterized protein"... 232 9.5e-42 2
FB|FBgn0040284 - symbol:SF2 "SF2" species:7227 "Drosophil... 230 9.5e-42 2
UNIPROTKB|H0YIB4 - symbol:SRSF9 "Serine/arginine-rich-spl... 189 4.3e-32 2
UNIPROTKB|F1NQW8 - symbol:SRSF1 "Serine/arginine-rich-spl... 240 4.7e-29 2
UNIPROTKB|F1NRH9 - symbol:SRSF1 "Serine/arginine-rich-spl... 240 4.7e-29 2
GENEDB_PFALCIPARUM|PFE0865c - symbol:PFE0865c "splicing f... 182 2.5e-27 2
UNIPROTKB|Q8I3T5 - symbol:PFE0865c "Splicing factor, puta... 182 2.5e-27 2
GENEDB_PFALCIPARUM|PF10_0217 - symbol:PF10_0217 "pre-mRNA... 188 8.4e-27 2
UNIPROTKB|Q8IJI0 - symbol:PF10_0217 "Pre-mRNA splicing fa... 188 8.4e-27 2
FB|FBgn0004587 - symbol:B52 "B52" species:7227 "Drosophil... 171 3.4e-23 2
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 156 1.9e-22 2
UNIPROTKB|E1BVJ8 - symbol:SRSF5A "Uncharacterized protein... 159 3.0e-22 2
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 152 4.3e-22 2
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 152 4.3e-22 2
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 152 4.3e-22 2
RGD|1359241 - symbol:Srsf6 "serine/arginine-rich splicing... 156 6.0e-22 2
UNIPROTKB|G3V6S8 - symbol:Sfrs6 "Similar to dJ862K6.2.2 (... 156 6.0e-22 2
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 158 6.6e-22 2
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 152 8.9e-22 2
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 161 1.0e-21 2
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 161 1.0e-21 2
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 161 1.0e-21 2
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 161 1.0e-21 2
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 161 1.0e-21 2
ZFIN|ZDB-GENE-040426-2824 - symbol:srsf6a "serine/arginin... 153 1.7e-21 2
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 156 3.1e-21 2
ZFIN|ZDB-GENE-040718-354 - symbol:srsf5b "serine/arginine... 140 9.7e-21 2
UNIPROTKB|F1S4B2 - symbol:SRSF5 "Uncharacterized protein"... 138 2.6e-20 2
MGI|MGI:98287 - symbol:Srsf5 "serine/arginine-rich splici... 138 3.0e-20 2
RGD|3664 - symbol:Srsf5 "serine/arginine-rich splicing fa... 138 3.0e-20 2
UNIPROTKB|Q09167 - symbol:Srsf5 "Serine/arginine-rich spl... 138 3.0e-20 2
ZFIN|ZDB-GENE-041219-1 - symbol:srsf6b "serine/arginine-r... 149 3.2e-20 2
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 138 3.2e-20 2
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 138 3.2e-20 2
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 138 3.2e-20 2
UNIPROTKB|J3KSR8 - symbol:SRSF1 "Serine/arginine-rich-spl... 230 3.1e-19 1
UNIPROTKB|F1NCV3 - symbol:SRSF5A "Uncharacterized protein... 121 8.1e-19 2
ASPGD|ASPL0000075947 - symbol:AN4978 species:162425 "Emer... 138 1.5e-18 2
POMBASE|SPAC16.02c - symbol:srp2 "mRNA export factor Srp2... 138 8.2e-18 2
UNIPROTKB|F1NJ04 - symbol:SRSF4 "Uncharacterized protein"... 160 1.1e-17 2
UNIPROTKB|E1BY00 - symbol:SRSF5 "Uncharacterized protein"... 140 1.4e-17 2
UNIPROTKB|E1C270 - symbol:E1C270 "Uncharacterized protein... 151 2.5e-16 2
UNIPROTKB|F1NJ03 - symbol:SRSF4 "Uncharacterized protein"... 160 4.7e-16 2
UNIPROTKB|F1PEZ0 - symbol:SRSF4 "Uncharacterized protein"... 161 5.0e-16 2
UNIPROTKB|F1LSN0 - symbol:Srsf4 "Protein Sfrs4" species:1... 161 5.5e-16 2
UNIPROTKB|F6T1J1 - symbol:SRSF4 "Serine/arginine-rich-spl... 124 7.9e-14 2
UNIPROTKB|J3KSW7 - symbol:SRSF1 "Serine/arginine-rich-spl... 174 2.7e-13 1
UNIPROTKB|B4E241 - symbol:SFRS3 "Splicing factor, arginin... 150 3.3e-13 2
FB|FBgn0030479 - symbol:Rbp1-like "Rbp1-like" species:722... 173 3.4e-13 1
WB|WBGene00004703 - symbol:rsp-6 species:6239 "Caenorhabd... 173 3.4e-13 1
UNIPROTKB|Q18409 - symbol:rsp-6 "Probable splicing factor... 173 3.4e-13 1
UNIPROTKB|E9PM61 - symbol:RBM4B "RNA-binding protein 4B" ... 116 4.2e-13 2
WB|WBGene00004698 - symbol:rsp-1 species:6239 "Caenorhabd... 115 4.5e-13 2
UNIPROTKB|Q23121 - symbol:rsp-1 "Probable splicing factor... 115 4.5e-13 2
TAIR|locus:2049766 - symbol:RS2Z33 "arginine/serine-rich ... 151 1.0e-12 2
UNIPROTKB|E9PLB0 - symbol:RBM4B "RNA-binding protein 4B" ... 116 2.8e-12 2
RGD|1306891 - symbol:Rbm4 "RNA binding motif protein 4" s... 116 2.8e-12 2
UNIPROTKB|D6R9K7 - symbol:RBM4 "RNA-binding protein 4" sp... 116 5.8e-12 2
UNIPROTKB|J3QRR5 - symbol:RBM4 "RNA-binding protein 4" sp... 116 7.4e-12 2
FB|FBgn0260944 - symbol:Rbp1 "RNA-binding protein 1" spec... 160 8.2e-12 1
UNIPROTKB|Q5ZLF9 - symbol:SRSF5 "Uncharacterized protein"... 123 3.1e-11 2
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 123 3.1e-11 2
UNIPROTKB|B4DUA4 - symbol:SRSF5 "cDNA FLJ57437, highly si... 123 3.1e-11 2
WB|WBGene00004699 - symbol:rsp-2 species:6239 "Caenorhabd... 105 3.6e-11 2
UNIPROTKB|Q23120 - symbol:rsp-2 "Probable splicing factor... 105 3.6e-11 2
FB|FBgn0028554 - symbol:x16 species:7227 "Drosophila mela... 155 3.9e-11 1
UNIPROTKB|Q5ZMI0 - symbol:SRSF7 "Uncharacterized protein"... 151 7.4e-11 1
SGD|S000002840 - symbol:NPL3 "RNA-binding protein" specie... 117 7.5e-11 2
UNIPROTKB|E1C8Y9 - symbol:SRSF3 "Uncharacterized protein"... 150 9.4e-11 1
UNIPROTKB|Q3SZR8 - symbol:SRSF3 "Serine/arginine-rich spl... 150 9.4e-11 1
UNIPROTKB|Q3T106 - symbol:SRSF7 "Serine/arginine-rich spl... 150 9.4e-11 1
UNIPROTKB|F2Z4N6 - symbol:SRSF3 "Uncharacterized protein"... 150 9.4e-11 1
UNIPROTKB|C9JAB2 - symbol:SRSF7 "Serine/arginine-rich-spl... 150 9.4e-11 1
UNIPROTKB|P84103 - symbol:SRSF3 "Serine/arginine-rich spl... 150 9.4e-11 1
UNIPROTKB|I3LAE9 - symbol:LOC100523801 "Uncharacterized p... 150 9.4e-11 1
MGI|MGI:98285 - symbol:Srsf3 "serine/arginine-rich splici... 150 9.4e-11 1
RGD|1307425 - symbol:Srsf7 "serine/arginine-rich splicing... 150 9.4e-11 1
WARNING: Descriptions of 286 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2114643 [details] [associations]
symbol:SR34a "Serine/Arginine-Rich Protein Splicing
Factor 34a" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276234 KO:K12890 OMA:DIREHEI EMBL:BT030067
IPI:IPI00539279 RefSeq:NP_001190041.1 RefSeq:NP_190512.3
UniGene:At.35607 ProteinModelPortal:A2RVS6 SMR:A2RVS6 IntAct:A2RVS6
STRING:A2RVS6 PaxDb:A2RVS6 PRIDE:A2RVS6 EnsemblPlants:AT3G49430.1
EnsemblPlants:AT3G49430.3 GeneID:824105 KEGG:ath:AT3G49430
TAIR:At3g49430 InParanoid:A2RVS6 PhylomeDB:A2RVS6
ProtClustDB:CLSN2918553 Genevestigator:A2RVS6 Uniprot:A2RVS6
Length = 300
Score = 403 (146.9 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 70/81 (86%), Positives = 79/81 (97%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
MSGRFSR+IYVGNLP DIRE+E+ED+FYKYGRI+DIELK+PPRPPCYCFVEFE++RDAED
Sbjct: 1 MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60
Query: 61 AIRGRDGYNFDGCRLRVELAH 81
AI+GRDGYN DGCRLRVELAH
Sbjct: 61 AIKGRDGYNLDGCRLRVELAH 81
Score = 382 (139.5 bits), Expect = 4.6e-76, Sum P(2) = 4.6e-76
Identities = 71/78 (91%), Positives = 75/78 (96%)
Query: 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181
HSE+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GTYGVVDYTN +DMKYAIRK
Sbjct: 119 HSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIRK 178
Query: 182 LDDTEFRNPWARGRITVK 199
LDDTEFRNPWARG I VK
Sbjct: 179 LDDTEFRNPWARGFIRVK 196
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 331 (121.6 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 62/81 (76%), Positives = 70/81 (86%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYNFDGCRLRVELAH 81
AI GRDGY+FDG RLRVELAH
Sbjct: 61 AIHGRDGYDFDGHRLRVELAH 81
Score = 299 (110.3 bits), Expect = 9.9e-60, Sum P(2) = 9.9e-60
Identities = 55/77 (71%), Positives = 66/77 (85%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT EDMKYA++KL
Sbjct: 117 SEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKL 176
Query: 183 DDTEFRNPWARGRITVK 199
DDTEFRN ++ G + V+
Sbjct: 177 DDTEFRNAFSNGYVRVR 193
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 348 (127.6 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 64/81 (79%), Positives = 73/81 (90%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
MS R++RTIYVGNLP DIR+ EVEDLFYKYG I+DI+LKIPPRPP Y FVEFE+ RDA+D
Sbjct: 1 MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60
Query: 61 AIRGRDGYNFDGCRLRVELAH 81
AI GRDGY+FDGCRLRVE+AH
Sbjct: 61 AIYGRDGYDFDGCRLRVEIAH 81
Score = 281 (104.0 bits), Expect = 1.3e-59, Sum P(2) = 1.3e-59
Identities = 54/77 (70%), Positives = 63/77 (81%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
S+YRV+V GLP SASWQDLKDHMRKAGDVCF+EV D +G GVVDY+N +DMKYAIRKL
Sbjct: 107 SDYRVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKL 166
Query: 183 DDTEFRNPWARGRITVK 199
D TEFRN ++ I V+
Sbjct: 167 DATEFRNAFSSAYIRVR 183
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 326 (119.8 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 63/81 (77%), Positives = 69/81 (85%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
MS R SRTIYVGNLP DIRE EVEDLF KYG ++ I+LKIPPRPP Y FVEFE+ARDA+D
Sbjct: 1 MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60
Query: 61 AIRGRDGYNFDGCRLRVELAH 81
AI GRDGY+FDG LRVELAH
Sbjct: 61 AIYGRDGYDFDGHHLRVELAH 81
Score = 272 (100.8 bits), Expect = 2.3e-56, Sum P(2) = 2.3e-56
Identities = 52/77 (67%), Positives = 62/77 (80%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SEYRV+V GLPSSASWQDLKDHMRK G+VCF++V RD GT G+VDYT+ EDMKYA L
Sbjct: 118 SEYRVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---L 174
Query: 183 DDTEFRNPWARGRITVK 199
DDTEFRN ++ + V+
Sbjct: 175 DDTEFRNAFSHEYVRVR 191
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 244 (91.0 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 46/76 (60%), Positives = 58/76 (76%)
Query: 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62
G + +YVGNLP D+RE EVED+F+KYGRI +++K R P + FVEFE+ RDAEDA+
Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAV 63
Query: 63 RGRDGYNFDGCRLRVE 78
R RDGY FDG R+RVE
Sbjct: 64 RARDGYEFDGRRIRVE 79
Score = 240 (89.5 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 46/65 (70%), Positives = 56/65 (86%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184
YRVIV GLP + SWQDLKDHMR AGDVC+A+V+RD GT GVV++T ED+KYA+RKLDD
Sbjct: 123 YRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDD 179
Query: 185 TEFRN 189
T+FR+
Sbjct: 180 TKFRS 184
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 244 (91.0 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 46/76 (60%), Positives = 58/76 (76%)
Query: 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62
G + +YVGNLP D+RE EVED+F+KYGRI +++K R P + FVEFE+ RDAEDA+
Sbjct: 5 GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAV 63
Query: 63 RGRDGYNFDGCRLRVE 78
R RDGY FDG R+RVE
Sbjct: 64 RARDGYEFDGRRIRVE 79
Score = 240 (89.5 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 46/65 (70%), Positives = 56/65 (86%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184
YRVIV GLP + SWQDLKDHMR AGDVC+A+V+RD GT GVV++T ED+KYA+RKLDD
Sbjct: 123 YRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDD 179
Query: 185 TEFRN 189
T+FR+
Sbjct: 180 TKFRS 184
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 240 (89.5 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 118 SEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKL 174
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 175 DNTKFRS 181
Score = 240 (89.5 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 47/70 (67%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 77 DYDGYRLRVE 86
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 240 (89.5 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 119 SEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKL 175
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 176 DNTKFRS 182
Score = 239 (89.2 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 78 DYDGYRLRVE 87
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 240 (89.5 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 128 SEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKL 184
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 185 DNTKFRS 191
Score = 234 (87.4 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
Identities = 46/70 (65%), Positives = 54/70 (77%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ RDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 77 DYDGYRLRVE 86
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 239 (89.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 78 DYDGYRLRVE 87
Score = 230 (86.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 119 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKL 175
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 176 DNTKFRS 182
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 239 (89.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 78 DYDGYRLRVE 87
Score = 230 (86.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 119 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKL 175
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 176 DNTKFRS 182
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 239 (89.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 78 DYDGYRLRVE 87
Score = 230 (86.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 119 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKL 175
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 176 DNTKFRS 182
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 239 (89.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 78 DYDGYRLRVE 87
Score = 230 (86.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 119 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKL 175
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 176 DNTKFRS 182
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 239 (89.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 78 DYDGYRLRVE 87
Score = 230 (86.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 119 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKL 175
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 176 DNTKFRS 182
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 239 (89.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 78 DYDGYRLRVE 87
Score = 230 (86.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 119 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKL 175
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 176 DNTKFRS 182
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 239 (89.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 78 DYDGYRLRVE 87
Score = 230 (86.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 119 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKL 175
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 176 DNTKFRS 182
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 239 (89.2 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVE 78
++DG RLRVE
Sbjct: 78 DYDGYRLRVE 87
Score = 230 (86.0 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 119 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKL 175
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 176 DNTKFRS 182
>MGI|MGI:104896 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104896 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AK011621 EMBL:AK020084 EMBL:BC012217 IPI:IPI00132340
RefSeq:NP_079849.1 UniGene:Mm.287826 PDB:1WG4 PDBsum:1WG4
ProteinModelPortal:Q9D0B0 SMR:Q9D0B0 STRING:Q9D0B0
PhosphoSite:Q9D0B0 PaxDb:Q9D0B0 PRIDE:Q9D0B0
Ensembl:ENSMUST00000031513 GeneID:108014 KEGG:mmu:108014
UCSC:uc008zdq.1 InParanoid:Q9D0B0 EvolutionaryTrace:Q9D0B0
NextBio:359885 Bgee:Q9D0B0 CleanEx:MM_SFRS9 Genevestigator:Q9D0B0
GermOnline:ENSMUSG00000029538 Uniprot:Q9D0B0
Length = 222
Score = 232 (86.7 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLPSD+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 69 NFDGCRLRVE 78
++ CRLRVE
Sbjct: 77 DYGQCRLRVE 86
Score = 231 (86.4 bits), Expect = 3.6e-42, Sum P(2) = 3.6e-42
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKL
Sbjct: 110 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKL 166
Query: 183 DDTEFRN 189
DDT+FR+
Sbjct: 167 DDTKFRS 173
>ZFIN|ZDB-GENE-040426-2397 [details] [associations]
symbol:srsf9 "serine/arginine-rich splicing factor
9" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-2397 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG4CC42K EMBL:BC154583
IPI:IPI00510602 UniGene:Dr.108357 ProteinModelPortal:A8WG53
SMR:A8WG53 STRING:A8WG53 Bgee:A8WG53 Uniprot:A8WG53
Length = 246
Score = 238 (88.8 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE+RVIV GLP + SWQDLKDHMR+AGDVCFA+V RD EG VV++ EDM+YA+R+L
Sbjct: 108 SEFRVIVTGLPPTGSWQDLKDHMREAGDVCFADVQRDGEG---VVEFLRREDMEYALRRL 164
Query: 183 DDTEFRN 189
D TEFR+
Sbjct: 165 DSTEFRS 171
Score = 222 (83.2 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 42/70 (60%), Positives = 53/70 (75%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP D++E ++EDLF+KYG+I DIELK + FV FE+ RDAEDA+ GR+GY
Sbjct: 6 IYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRSTIPFAFVRFEDPRDAEDAVFGRNGY 65
Query: 69 NFDGCRLRVE 78
F C+LRVE
Sbjct: 66 GFGDCKLRVE 75
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 231 (86.4 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKL
Sbjct: 109 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKL 165
Query: 183 DDTEFRN 189
DDT+FR+
Sbjct: 166 DDTKFRS 172
Score = 229 (85.7 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 45/70 (64%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGCRLRVE 78
++ CRLRVE
Sbjct: 76 DYGQCRLRVE 85
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 231 (86.4 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKL
Sbjct: 109 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKL 165
Query: 183 DDTEFRN 189
DDT+FR+
Sbjct: 166 DDTKFRS 172
Score = 229 (85.7 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 45/70 (64%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGCRLRVE 78
++ CRLRVE
Sbjct: 76 DYGQCRLRVE 85
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 231 (86.4 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKL
Sbjct: 109 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKL 165
Query: 183 DDTEFRN 189
DDT+FR+
Sbjct: 166 DDTKFRS 172
Score = 229 (85.7 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 45/70 (64%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGCRLRVE 78
++ CRLRVE
Sbjct: 76 DYGQCRLRVE 85
>RGD|1309495 [details] [associations]
symbol:Srsf9 "serine/arginine-rich splicing factor 9"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO] [GO:0005730 "nucleolus" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309495 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683
OMA:DIREHEI OrthoDB:EOG4CC42K EMBL:BC087684 IPI:IPI00371124
RefSeq:NP_001009255.1 UniGene:Rn.136718 ProteinModelPortal:Q5PPI1
SMR:Q5PPI1 STRING:Q5PPI1 PhosphoSite:Q5PPI1 PRIDE:Q5PPI1
Ensembl:ENSRNOT00000001539 GeneID:288701 KEGG:rno:288701
UCSC:RGD:1309495 InParanoid:Q5PPI1 NextBio:628577
Genevestigator:Q5PPI1 GermOnline:ENSRNOG00000001163 Uniprot:Q5PPI1
Length = 221
Score = 231 (86.4 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 42/67 (62%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKL
Sbjct: 109 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKL 165
Query: 183 DDTEFRN 189
DDT+FR+
Sbjct: 166 DDTKFRS 172
Score = 229 (85.7 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
Identities = 45/70 (64%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGCRLRVE 78
++ CRLRVE
Sbjct: 76 DYGQCRLRVE 85
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 232 (86.7 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 46/70 (65%), Positives = 55/70 (78%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLPSD+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPSDVREKDLEDLFYKYGRISEIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGCRLRVE 78
++ CRLRVE
Sbjct: 76 DYGQCRLRVE 85
Score = 227 (85.0 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 41/67 (61%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
S++RV+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKL
Sbjct: 109 SDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKL 165
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 166 DETKFRS 172
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 230 (86.0 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 43/67 (64%), Positives = 54/67 (80%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
S+YRV+V GLP+S SWQDLKDHMR+AGDVCFA+ +D G VV++ EDMKYAI+KL
Sbjct: 113 SQYRVMVTGLPASGSWQDLKDHMREAGDVCFADTYKDGSG---VVEFLRHEDMKYAIKKL 169
Query: 183 DDTEFRN 189
DD+ FR+
Sbjct: 170 DDSRFRS 176
Score = 229 (85.7 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 43/78 (55%), Positives = 59/78 (75%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
M R IYVGNLP DIR +++DLF+K+G++ ++LK PP + FVEFE+ARDA+D
Sbjct: 1 MGSRNECRIYVGNLPPDIRTKDIQDLFHKFGKVTFVDLKNRRGPP-FAFVEFEDARDADD 59
Query: 61 AIRGRDGYNFDGCRLRVE 78
A++ RDGY++DG RLRVE
Sbjct: 60 AVKARDGYDYDGYRLRVE 77
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 189 (71.6 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 38/59 (64%), Positives = 46/59 (77%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67
IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+G
Sbjct: 4 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNG 62
Score = 178 (67.7 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
Identities = 33/52 (63%), Positives = 41/52 (78%)
Query: 131 GLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKL
Sbjct: 62 GLPPSGSWQDLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKL 110
>UNIPROTKB|F1NQW8 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 IPI:IPI00573494 EMBL:AADN02025726
Ensembl:ENSGALT00000039052 Uniprot:F1NQW8
Length = 184
Score = 240 (89.5 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 55 SEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKL 111
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 112 DNTKFRS 118
Score = 98 (39.6 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 18/23 (78%), Positives = 21/23 (91%)
Query: 56 RDAEDAIRGRDGYNFDGCRLRVE 78
RDAEDA+ GRDGY++DG RLRVE
Sbjct: 1 RDAEDAVYGRDGYDYDGYRLRVE 23
>UNIPROTKB|F1NRH9 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0060048 "cardiac muscle contraction"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0071013 GO:GO:0000395
GeneTree:ENSGT00700000104103 EMBL:AADN02025726 IPI:IPI00819428
Ensembl:ENSGALT00000008863 OMA:EVRQEDI Uniprot:F1NRH9
Length = 192
Score = 240 (89.5 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 47/67 (70%), Positives = 56/67 (83%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SEYRVIV GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 55 SEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKL 111
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 112 DNTKFRS 118
Score = 98 (39.6 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
Identities = 18/23 (78%), Positives = 21/23 (91%)
Query: 56 RDAEDAIRGRDGYNFDGCRLRVE 78
RDAEDA+ GRDGY++DG RLRVE
Sbjct: 1 RDAEDAVYGRDGYDYDGYRLRVE 23
>GENEDB_PFALCIPARUM|PFE0865c [details] [associations]
symbol:PFE0865c "splicing factor, putative"
species:5833 "Plasmodium falciparum" [GO:0008380 "RNA splicing"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 182 (69.1 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLPS + +VE+ F KYG IL ++K + F+EFE+ARDA DAI+ +DG
Sbjct: 10 IYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 69 NFDGCRLRVEL 79
+F+G +LRVE+
Sbjct: 70 DFEGNKLRVEV 80
Score = 143 (55.4 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184
Y V V GLP S SWQDLKDH+R+AG+ A+V +D GT G V + N +DM AI K +
Sbjct: 111 YVVEVTGLPISGSWQDLKDHLREAGECGHADVFKD--GT-GEVSFFNKDDMLEAIDKFNG 167
Query: 185 TEFRN-PWARGRITVK 199
+ FR+ + +I+++
Sbjct: 168 SIFRSHEGEKSKISIR 183
>UNIPROTKB|Q8I3T5 [details] [associations]
symbol:PFE0865c "Splicing factor, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006397 "mRNA processing" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AL844504 HOGENOM:HOG000276234
RefSeq:XP_001351730.2 ProteinModelPortal:Q8I3T5 MINT:MINT-1573808
PRIDE:Q8I3T5 EnsemblProtists:PFE0865c:mRNA GeneID:812988
KEGG:pfa:PFE0865c EuPathDB:PlasmoDB:PF3D7_0517300
ProtClustDB:CLSZ2434547 Uniprot:Q8I3T5
Length = 298
Score = 182 (69.1 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 36/71 (50%), Positives = 50/71 (70%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLPS + +VE+ F KYG IL ++K + F+EFE+ARDA DAI+ +DG
Sbjct: 10 IYVGNLPSHVSSRDVENEFRKYGNILKCDVKKTVSGAAFAFIEFEDARDAADAIKEKDGC 69
Query: 69 NFDGCRLRVEL 79
+F+G +LRVE+
Sbjct: 70 DFEGNKLRVEV 80
Score = 143 (55.4 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 34/76 (44%), Positives = 49/76 (64%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184
Y V V GLP S SWQDLKDH+R+AG+ A+V +D GT G V + N +DM AI K +
Sbjct: 111 YVVEVTGLPISGSWQDLKDHLREAGECGHADVFKD--GT-GEVSFFNKDDMLEAIDKFNG 167
Query: 185 TEFRN-PWARGRITVK 199
+ FR+ + +I+++
Sbjct: 168 SIFRSHEGEKSKISIR 183
>GENEDB_PFALCIPARUM|PF10_0217 [details] [associations]
symbol:PF10_0217 "pre-mRNA splicing factor,
putative" species:5833 "Plasmodium falciparum" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 188 (71.2 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 44/80 (55%), Positives = 54/80 (67%)
Query: 4 RFSRT---IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPC--YCFVEFENARDA 58
RFS++ IYVGNLP ++ E EV DLF KYGRI I++K P R Y FV + + +DA
Sbjct: 6 RFSKSSSCIYVGNLPGNVIEEEVYDLFGKYGRIKYIDIK-PSRSSSSSYAFVHYYDLKDA 64
Query: 59 EDAIRGRDGYNFDGCRLRVE 78
+ AI RDGY FDG RLRVE
Sbjct: 65 DYAIERRDGYKFDGFRLRVE 84
Score = 146 (56.5 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E RVIV LP + WQ LKD MR+ GDV +A + R G+V++ + +DM YAI K
Sbjct: 108 TENRVIVTNLPDNCRWQHLKDIMRQCGDVGYANIERGK----GIVEFVSYDDMLYAIEKF 163
Query: 183 DDTEFR 188
D EF+
Sbjct: 164 DGAEFK 169
Score = 41 (19.5 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 150 DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181
DV +V RD G+ + Y N KY R+
Sbjct: 173 DVTNIKVRRDKRGSSYMKRYRNDYSPKYKKRR 204
>UNIPROTKB|Q8IJI0 [details] [associations]
symbol:PF10_0217 "Pre-mRNA splicing factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014185
HSSP:P52298 RefSeq:XP_001347501.1 ProteinModelPortal:Q8IJI0
IntAct:Q8IJI0 MINT:MINT-1545014 PRIDE:Q8IJI0
EnsemblProtists:PF10_0217:mRNA GeneID:810374 KEGG:pfa:PF10_0217
EuPathDB:PlasmoDB:PF3D7_1022400 HOGENOM:HOG000284632 OMA:IRTENRV
ProtClustDB:CLSZ2500844 Uniprot:Q8IJI0
Length = 538
Score = 188 (71.2 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 44/80 (55%), Positives = 54/80 (67%)
Query: 4 RFSRT---IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPC--YCFVEFENARDA 58
RFS++ IYVGNLP ++ E EV DLF KYGRI I++K P R Y FV + + +DA
Sbjct: 6 RFSKSSSCIYVGNLPGNVIEEEVYDLFGKYGRIKYIDIK-PSRSSSSSYAFVHYYDLKDA 64
Query: 59 EDAIRGRDGYNFDGCRLRVE 78
+ AI RDGY FDG RLRVE
Sbjct: 65 DYAIERRDGYKFDGFRLRVE 84
Score = 146 (56.5 bits), Expect = 8.4e-27, Sum P(2) = 8.4e-27
Identities = 30/66 (45%), Positives = 41/66 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E RVIV LP + WQ LKD MR+ GDV +A + R G+V++ + +DM YAI K
Sbjct: 108 TENRVIVTNLPDNCRWQHLKDIMRQCGDVGYANIERGK----GIVEFVSYDDMLYAIEKF 163
Query: 183 DDTEFR 188
D EF+
Sbjct: 164 DGAEFK 169
Score = 41 (19.5 bits), Expect = 7.5e-16, Sum P(2) = 7.5e-16
Identities = 11/32 (34%), Positives = 15/32 (46%)
Query: 150 DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181
DV +V RD G+ + Y N KY R+
Sbjct: 173 DVTNIKVRRDKRGSSYMKRYRNDYSPKYKKRR 204
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 171 (65.3 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + GVV++ + DMK AI KL
Sbjct: 118 TEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE-GVVEFASLSDMKTAIEKL 176
Query: 183 DDTE 186
DDTE
Sbjct: 177 DDTE 180
Score = 123 (48.4 bits), Expect = 3.4e-23, Sum P(2) = 3.4e-23
Identities = 32/72 (44%), Positives = 42/72 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG LP +RE ++E F YGR DI +K Y FVEFE+ RDA+DA+ +G
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIKNG-----YGFVEFEDYRDADDAVYELNGK 60
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 61 ELLGERVVVEPA 72
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 156 (60.0 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KL
Sbjct: 108 TEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKL 166
Query: 183 DDTE 186
D TE
Sbjct: 167 DGTE 170
Score = 130 (50.8 bits), Expect = 1.9e-22, Sum P(2) = 1.9e-22
Identities = 29/72 (40%), Positives = 46/72 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L+++LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLKNG-----YGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVIVEHA 70
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 159 (61.0 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 32/64 (50%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E+R+IV L S SWQDLKD MRKAG+V + + R++ GVV++ + DMK A+ KL
Sbjct: 103 TEHRIIVENLSSRISWQDLKDVMRKAGEVTYVDAHRNNRNE-GVVEFASYSDMKSALEKL 161
Query: 183 DDTE 186
D TE
Sbjct: 162 DGTE 165
Score = 115 (45.5 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
Identities = 32/73 (43%), Positives = 43/73 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
++VG+L S RE +VE F YGRI +I LK + FVEFE+ RDA+DAI +G
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNG-----FGFVEFEDHRDADDAIYELNGK 60
Query: 69 NF-DGCRLRVELA 80
D R+ +E A
Sbjct: 61 ELCDERRVTIEHA 73
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 152 (58.6 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E+R+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KL
Sbjct: 108 TEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKL 166
Query: 183 DDTE 186
D TE
Sbjct: 167 DGTE 170
Score = 131 (51.2 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L+I+LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNG-----YGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVIVEHA 70
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 152 (58.6 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E+R+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KL
Sbjct: 108 TEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKL 166
Query: 183 DDTE 186
D TE
Sbjct: 167 DGTE 170
Score = 131 (51.2 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L+I+LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNG-----YGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVIVEHA 70
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 152 (58.6 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E+R+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KL
Sbjct: 108 TEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKL 166
Query: 183 DDTE 186
D TE
Sbjct: 167 DGTE 170
Score = 131 (51.2 bits), Expect = 4.3e-22, Sum P(2) = 4.3e-22
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L+I+LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNG-----YGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVIVEHA 70
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 156 (60.0 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KL
Sbjct: 108 TEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKL 166
Query: 183 DDTE 186
D TE
Sbjct: 167 DGTE 170
Score = 125 (49.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L+I+LK Y FVEFE++RDA+DA+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNG-----YGFVEFEDSRDADDAVYELNSK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVIVEHA 70
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 156 (60.0 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 31/64 (48%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KL
Sbjct: 108 TEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKL 166
Query: 183 DDTE 186
D TE
Sbjct: 167 DGTE 170
Score = 125 (49.1 bits), Expect = 6.0e-22, Sum P(2) = 6.0e-22
Identities = 29/72 (40%), Positives = 45/72 (62%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L+I+LK Y FVEFE++RDA+DA+ +
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNG-----YGFVEFEDSRDADDAVYELNSK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVIVEHA 70
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 158 (60.7 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
Identities = 30/64 (46%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
++YR+IV L S SWQDLKD+MR+AG+V +A+ ++ + GV+++ DMK A+ KL
Sbjct: 105 TDYRLIVENLSSRCSWQDLKDYMRQAGEVTYADTNKGRKNE-GVIEFRQYSDMKRALEKL 163
Query: 183 DDTE 186
D TE
Sbjct: 164 DGTE 167
Score = 124 (48.7 bits), Expect = 6.6e-22, Sum P(2) = 6.6e-22
Identities = 30/70 (42%), Positives = 43/70 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYVGKLSYRAREKDVERFFKGYGKILEVDLKNG-----YGFVEFDDPRDADDAVYDLNGK 58
Query: 69 NFDGCRLRVE 78
+ G R+ VE
Sbjct: 59 DLCGKRVIVE 68
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 152 (58.6 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E+R+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KL
Sbjct: 108 TEFRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKL 166
Query: 183 DDTE 186
D TE
Sbjct: 167 DGTE 170
Score = 128 (50.1 bits), Expect = 8.9e-22, Sum P(2) = 8.9e-22
Identities = 30/72 (41%), Positives = 45/72 (62%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L I+LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLKNG-----YGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVIVEHA 70
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 161 (61.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KL
Sbjct: 102 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKL 160
Query: 183 DDTE 186
D TE
Sbjct: 161 DGTE 164
Score = 124 (48.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
+ G R+ VE A
Sbjct: 59 DLCGERVIVEHA 70
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 161 (61.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KL
Sbjct: 102 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKL 160
Query: 183 DDTE 186
D TE
Sbjct: 161 DGTE 164
Score = 124 (48.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
+ G R+ VE A
Sbjct: 59 DLCGERVIVEHA 70
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 161 (61.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KL
Sbjct: 102 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKL 160
Query: 183 DDTE 186
D TE
Sbjct: 161 DGTE 164
Score = 124 (48.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
+ G R+ VE A
Sbjct: 59 DLCGERVIVEHA 70
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 161 (61.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KL
Sbjct: 102 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKL 160
Query: 183 DDTE 186
D TE
Sbjct: 161 DGTE 164
Score = 124 (48.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
+ G R+ VE A
Sbjct: 59 DLCGERVIVEHA 70
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 161 (61.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KL
Sbjct: 102 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKL 160
Query: 183 DDTE 186
D TE
Sbjct: 161 DGTE 164
Score = 124 (48.7 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
+ G R+ VE A
Sbjct: 59 DLCGERVIVEHA 70
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 153 (58.9 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DM+ A+ KL
Sbjct: 112 TEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKE-RANEGVIEFRSYSDMRRALEKL 170
Query: 183 DDTE 186
D T+
Sbjct: 171 DGTD 174
Score = 126 (49.4 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 28/72 (38%), Positives = 44/72 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L +RE +++ F YG++L+++LK Y FVEFE+ RDA+DA+ +G
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGKLLEVDLKNG-----YGFVEFEDTRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVMVEHA 70
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 156 (60.0 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 32/64 (50%), Positives = 42/64 (65%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E+R+IV L S SWQDLKD MRK G+V F + R + GVV++ + DMK AI KL
Sbjct: 111 TEHRIIVENLSSRISWQDLKDLMRKVGEVTFVDAHRTKKNE-GVVEFASHSDMKNAIEKL 169
Query: 183 DDTE 186
D T+
Sbjct: 170 DGTD 173
Score = 110 (43.8 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
Identities = 28/73 (38%), Positives = 40/73 (54%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI +I LK + FVEF++ RDA+DA+ +G
Sbjct: 6 VFIGRLSPHARERDVEKFFKGYGRIREINLKNG-----FGFVEFDDYRDADDAVYELNGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 140 (54.3 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 30/64 (46%), Positives = 41/64 (64%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E R+IV L S SWQDLKD MR+AG+V FA+ R + GVV++ + D+K A+ KL
Sbjct: 108 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPNLNE-GVVEFASHSDLKNALEKL 166
Query: 183 DDTE 186
E
Sbjct: 167 SGKE 170
Score = 127 (49.8 bits), Expect = 9.7e-21, Sum P(2) = 9.7e-21
Identities = 33/73 (45%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
I++G L RE +VE F YGRI DI+LK R + FVEF++ RDAEDA+ DG
Sbjct: 6 IFIGRLNPSAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFDDPRDAEDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CNERVTIEH 71
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 138 (53.6 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E R+IV L S SWQDLKD MR+AG+V FA+ R GVV++ + D+K AI KL
Sbjct: 106 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKL 164
Query: 183 DDTE 186
E
Sbjct: 165 SGKE 168
Score = 123 (48.4 bits), Expect = 2.6e-20, Sum P(2) = 2.6e-20
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 138 (53.6 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E R+IV L S SWQDLKD MR+AG+V FA+ R GVV++ + D+K AI KL
Sbjct: 106 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKL 164
Query: 183 DDTE 186
E
Sbjct: 165 SGKE 168
Score = 123 (48.4 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 138 (53.6 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E R+IV L S SWQDLKD MR+AG+V FA+ R GVV++ + D+K AI KL
Sbjct: 106 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKL 164
Query: 183 DDTE 186
E
Sbjct: 165 SGKE 168
Score = 123 (48.4 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 138 (53.6 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E R+IV L S SWQDLKD MR+AG+V FA+ R GVV++ + D+K AI KL
Sbjct: 106 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKL 164
Query: 183 DDTE 186
E
Sbjct: 165 SGKE 168
Score = 123 (48.4 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 149 (57.5 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 29/64 (45%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DM+ A+ KL
Sbjct: 112 TEYRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSHSDMRRALDKL 170
Query: 183 DDTE 186
D T+
Sbjct: 171 DVTD 174
Score = 117 (46.2 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L +RE +++ F YG++++ +LK Y FVEFE+ RDA+DA+ +G
Sbjct: 4 VYIGKLSYHVREKDIQRFFGGYGKLMETDLKNG-----YGFVEFEDTRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVIVEHA 70
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 138 (53.6 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E R+IV L S SWQDLKD MR+AG+V FA+ R GVV++ + D+K AI KL
Sbjct: 106 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKL 164
Query: 183 DDTE 186
E
Sbjct: 165 SGKE 168
Score = 123 (48.4 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 138 (53.6 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E R+IV L S SWQDLKD MR+AG+V FA+ R GVV++ + D+K AI KL
Sbjct: 106 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKL 164
Query: 183 DDTE 186
E
Sbjct: 165 SGKE 168
Score = 123 (48.4 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 138 (53.6 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E R+IV L S SWQDLKD MR+AG+V FA+ R GVV++ + D+K AI KL
Sbjct: 106 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYGDLKNAIEKL 164
Query: 183 DDTE 186
E
Sbjct: 165 SGKE 168
Score = 123 (48.4 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
>UNIPROTKB|J3KSR8 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813 Ensembl:ENST00000584668
Uniprot:J3KSR8
Length = 143
Score = 230 (86.0 bits), Expect = 3.1e-19, P = 3.1e-19
Identities = 45/67 (67%), Positives = 55/67 (82%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SE RV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 14 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKL 70
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 71 DNTKFRS 77
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 121 (47.7 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPED 174
+E+R+IV L S SWQDLKD MRKAG+V + + R++ GVV++ + D
Sbjct: 102 TEHRIIVENLSSRISWQDLKDVMRKAGEVTYVDAHRNNRNE-GVVEFASYSD 152
Score = 119 (46.9 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
++VG+L S RE +VE F YGRI +I LK + FVEFE+ RDA+DAI +G
Sbjct: 6 VFVGHLSSRARERDVEKFFKGYGRIREIHLKNG-----FGFVEFEDHRDADDAIYELNGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CDERVTIEH 71
>ASPGD|ASPL0000075947 [details] [associations]
symbol:AN4978 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
OMA:ANQPLEV OrthoDB:EOG4BP4N7 HOGENOM:HOG000276234
RefSeq:XP_662582.1 ProteinModelPortal:Q5B3A2 STRING:Q5B3A2
EnsemblFungi:CADANIAT00005417 GeneID:2872778 KEGG:ani:AN4978.2
Uniprot:Q5B3A2
Length = 296
Score = 138 (53.6 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183
+R+I+ GLP + SWQDLKD R++G DV ++E R+ G G+V++ D+K A+ KLD
Sbjct: 103 FRMIISGLPET-SWQDLKDFARQSGLDVVYSETGREP-GR-GIVEFETANDLKTAVEKLD 159
Query: 184 DTEFR 188
EF+
Sbjct: 160 GREFK 164
Score = 109 (43.4 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 25/75 (33%), Positives = 43/75 (57%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S +Y+GNLP ++ + ++E+ F +G E+K+ + F+E+E+A DA D +
Sbjct: 6 STRLYLGNLPRNVTKQDIEEHFSTHGTGKITEIKLMNG---FGFIEYEDAMDARDIVPAF 62
Query: 66 DGYNFDGCRLRVELA 80
G +F G RL V+ A
Sbjct: 63 HGSDFKGERLTVQFA 77
>POMBASE|SPAC16.02c [details] [associations]
symbol:srp2 "mRNA export factor Srp2" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008143 "poly(A) RNA binding" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0046982 "protein heterodimerization
activity" evidence=IPI] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC16.02c
GO:GO:0005634 EMBL:CU329670 GO:GO:0008380 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006406
eggNOG:COG0724 GO:GO:0008143 OrthoDB:EOG4BP4N7 EMBL:AF012278
EMBL:D89163 PIR:T37730 PIR:T42525 RefSeq:NP_594570.1
ProteinModelPortal:P78814 STRING:P78814 PRIDE:P78814
EnsemblFungi:SPAC16.02c.1 GeneID:2542772 KEGG:spo:SPAC16.02c
OMA:CKERSHG NextBio:20803816 Uniprot:P78814
Length = 365
Score = 138 (53.6 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183
+R+IV L SWQDLKD MRKAG+ F + R++ G GVV+++ EDM+ A+ L+
Sbjct: 98 FRLIVENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGA-GVVEFSTEEDMRNALTSLN 155
Score = 106 (42.4 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 27/72 (37%), Positives = 38/72 (52%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
++VG +P ++ D F YG+ILD +L + FVE E+ARDA D + G
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMNG-----FGFVEVEDARDARDIVNDFQGK 60
Query: 69 NFDGCRLRVELA 80
F G R+ VE A
Sbjct: 61 EFMGSRIVVEPA 72
>UNIPROTKB|F1NJ04 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02043941 IPI:IPI00574862
Ensembl:ENSGALT00000002148 Uniprot:F1NJ04
Length = 222
Score = 160 (61.4 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KL
Sbjct: 103 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFKSYSDMKRALEKL 161
Query: 183 DDTE 186
D TE
Sbjct: 162 DGTE 165
Score = 69 (29.3 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 47 YCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80
Y FVEF++ RDA+DA+ +G + G R+ VE A
Sbjct: 38 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 71
>UNIPROTKB|E1BY00 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104103 EMBL:AADN02003156
IPI:IPI00590971 ProteinModelPortal:E1BY00
Ensembl:ENSGALT00000015342 ArrayExpress:E1BY00 Uniprot:E1BY00
Length = 266
Score = 140 (54.3 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 31/64 (48%), Positives = 40/64 (62%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E R+IV L S SWQDLKD MR+AG+V FA+ R GVV++ + D+K AI KL
Sbjct: 102 TENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE-GVVEFASYSDLKNAIEKL 160
Query: 183 DDTE 186
E
Sbjct: 161 SGKE 164
Score = 95 (38.5 bits), Expect = 1.4e-17, Sum P(2) = 1.4e-17
Identities = 29/73 (39%), Positives = 39/73 (53%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FV+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVD---PRDADDAVYELDGK 57
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 58 EL--CSERVTIEH 68
>UNIPROTKB|E1C270 [details] [associations]
symbol:E1C270 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KPRSSHR
EMBL:AADN02019572 EMBL:AADN02019573 IPI:IPI00578317
ProteinModelPortal:E1C270 Ensembl:ENSGALT00000001462 Uniprot:E1C270
Length = 348
Score = 151 (58.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+E+R+IV L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KL
Sbjct: 109 TEHRLIVENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKL 167
Query: 183 DDTE 186
D TE
Sbjct: 168 DGTE 171
Score = 77 (32.2 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELK 39
+Y+G L +RE +++ F YGR+L+++LK
Sbjct: 4 VYIGRLSYHVREKDIQRFFSGYGRLLEVDLK 34
>UNIPROTKB|F1NJ03 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KDRGETR
EMBL:AADN02043941 IPI:IPI00581723 Ensembl:ENSGALT00000002149
Uniprot:F1NJ03
Length = 439
Score = 160 (61.4 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KL
Sbjct: 66 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFKSYSDMKRALEKL 124
Query: 183 DDTE 186
D TE
Sbjct: 125 DGTE 128
Score = 69 (29.3 bits), Expect = 4.7e-16, Sum P(2) = 4.7e-16
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 47 YCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80
Y FVEF++ RDA+DA+ +G + G R+ VE A
Sbjct: 1 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 34
>UNIPROTKB|F1PEZ0 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AAEX03001696
Ensembl:ENSCAFT00000018513 OMA:WESKTHI Uniprot:F1PEZ0
Length = 479
Score = 161 (61.7 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KL
Sbjct: 81 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKL 139
Query: 183 DDTE 186
D TE
Sbjct: 140 DGTE 143
Score = 69 (29.3 bits), Expect = 5.0e-16, Sum P(2) = 5.0e-16
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 47 YCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80
Y FVEF++ RDA+DA+ +G + G R+ VE A
Sbjct: 16 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 49
>UNIPROTKB|F1LSN0 [details] [associations]
symbol:Srsf4 "Protein Sfrs4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
IPI:IPI00951281 Ensembl:ENSRNOT00000064233 ArrayExpress:F1LSN0
Uniprot:F1LSN0
Length = 492
Score = 161 (61.7 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 31/64 (48%), Positives = 45/64 (70%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+EYR+IV L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KL
Sbjct: 106 TEYRLIVENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKL 164
Query: 183 DDTE 186
D TE
Sbjct: 165 DGTE 168
Score = 69 (29.3 bits), Expect = 5.5e-16, Sum P(2) = 5.5e-16
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 47 YCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80
Y FVEF++ RDA+DA+ +G + G R+ VE A
Sbjct: 41 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 74
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 124 (48.7 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKNG-----YGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
+ G R+ VE A
Sbjct: 59 DLCGERVIVEHA 70
Score = 68 (29.0 bits), Expect = 7.9e-14, Sum P(2) = 7.9e-14
Identities = 13/20 (65%), Positives = 15/20 (75%)
Query: 123 SEYRVIVRGLPSSASWQDLK 142
+EYR+IV L S SWQDLK
Sbjct: 102 TEYRLIVENLSSRCSWQDLK 121
>UNIPROTKB|J3KSW7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3KSW7 Ensembl:ENST00000585096 Uniprot:J3KSW7
Length = 73
Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
Identities = 34/54 (62%), Positives = 41/54 (75%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAV 71
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 150 (57.9 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 70 TLCGCRVRVELSN 82
Score = 36 (17.7 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 180 RKLDDTEFRNPWARGRITV 198
R DD R+P R R+T+
Sbjct: 99 RPRDDYRRRSPPPRRRVTI 117
>FB|FBgn0030479 [details] [associations]
symbol:Rbp1-like "Rbp1-like" species:7227 "Drosophila
melanogaster" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0071011 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104452 OrthoDB:EOG4CNP7N eggNOG:NOG315521
EMBL:AY113490 RefSeq:NP_572880.2 UniGene:Dm.14416 SMR:Q9VYD8
STRING:Q9VYD8 EnsemblMetazoa:FBtr0073790 GeneID:32293
KEGG:dme:Dmel_CG1987 UCSC:CG1987-RA CTD:32293 FlyBase:FBgn0030479
InParanoid:Q9VYD8 OMA:IDGAHET ChiTaRS:Rbp1-like GenomeRNAi:32293
NextBio:777789 Uniprot:Q9VYD8
Length = 158
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 35/72 (48%), Positives = 48/72 (66%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL S +YE+E+ F KYG + ++ + PP + FVEFE+ RDAEDA RG DG
Sbjct: 13 VYVGNLGSSASKYEIENAFSKYGPLRNVW--VARNPPGFAFVEFEDRRDAEDATRGLDGT 70
Query: 69 NFDGCRLRVELA 80
G R+RVE++
Sbjct: 71 RCCGTRIRVEMS 82
>WB|WBGene00004703 [details] [associations]
symbol:rsp-6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0008406 "gonad development"
evidence=IMP] [GO:0040026 "positive regulation of vulval
development" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0001703 "gastrulation with mouth forming first" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0048477
"oogenesis" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040027 "negative regulation of vulval development"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0031554
"regulation of DNA-dependent transcription, termination"
evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040011 GO:GO:0048477 GO:GO:0003723 GO:GO:0040035
GO:GO:0040027 GO:GO:0000398 GO:GO:0040026 EMBL:FO080768
GO:GO:0001703 GeneTree:ENSGT00700000104452 GO:GO:0031554
HOGENOM:HOG000276234 PIR:T34145 RefSeq:NP_741446.1
RefSeq:NP_741447.1 RefSeq:NP_741448.1 ProteinModelPortal:Q18409
SMR:Q18409 DIP:DIP-27100N IntAct:Q18409 MINT:MINT-1118164
STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409 EnsemblMetazoa:C33H5.12a.1
EnsemblMetazoa:C33H5.12a.2 GeneID:177566 KEGG:cel:CELE_C33H5.12
UCSC:C33H5.12a.1 CTD:177566 WormBase:C33H5.12a WormBase:C33H5.12b
WormBase:C33H5.12c eggNOG:NOG315521 InParanoid:Q18409 KO:K12896
OMA:VELSHGQ NextBio:897392 Uniprot:Q18409
Length = 179
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG LPSD E+E++F ++GRI + + RPP + FVE+++ RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVW--VARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 NFDGCRLRVELA 80
G R RVEL+
Sbjct: 63 RICGVRARVELS 74
>UNIPROTKB|Q18409 [details] [associations]
symbol:rsp-6 "Probable splicing factor,
arginine/serine-rich 6" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0008406 "gonad development" evidence=IGI] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0002009 GO:GO:0040007
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003723 GO:GO:0040035 GO:GO:0040027
GO:GO:0000398 GO:GO:0040026 EMBL:FO080768 GO:GO:0001703
GeneTree:ENSGT00700000104452 GO:GO:0031554 HOGENOM:HOG000276234
PIR:T34145 RefSeq:NP_741446.1 RefSeq:NP_741447.1 RefSeq:NP_741448.1
ProteinModelPortal:Q18409 SMR:Q18409 DIP:DIP-27100N IntAct:Q18409
MINT:MINT-1118164 STRING:Q18409 PaxDb:Q18409 PRIDE:Q18409
EnsemblMetazoa:C33H5.12a.1 EnsemblMetazoa:C33H5.12a.2 GeneID:177566
KEGG:cel:CELE_C33H5.12 UCSC:C33H5.12a.1 CTD:177566
WormBase:C33H5.12a WormBase:C33H5.12b WormBase:C33H5.12c
eggNOG:NOG315521 InParanoid:Q18409 KO:K12896 OMA:VELSHGQ
NextBio:897392 Uniprot:Q18409
Length = 179
Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
Identities = 34/72 (47%), Positives = 48/72 (66%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG LPSD E+E++F ++GRI + + RPP + FVE+++ RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVW--VARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 NFDGCRLRVELA 80
G R RVEL+
Sbjct: 63 RICGVRARVELS 74
>UNIPROTKB|E9PM61 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00977800
ProteinModelPortal:E9PM61 SMR:E9PM61 Ensembl:ENST00000524637
ArrayExpress:E9PM61 Bgee:E9PM61 Uniprot:E9PM61
Length = 147
Score = 116 (45.9 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 69 (29.3 bits), Expect = 4.2e-13, Sum P(2) = 4.2e-13
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+ W+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQGWWS 141
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 115 (45.5 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IY+G L S + E ++E F YG+I D+ LK + FVEF++ RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNG-----FGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 NFDGCRL 75
G R+
Sbjct: 60 ELGGERV 66
Score = 102 (41.0 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEV-SRDSEGTYGVVDYTNPEDMKYAIR 180
+ +RV+V L S SWQDLKD +R+ G + +AE R +E ++ + P D+K I
Sbjct: 127 TRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEA---LLCFATPSDLKRCIE 183
Query: 181 KLD 183
K D
Sbjct: 184 KCD 186
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 115 (45.5 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 27/67 (40%), Positives = 39/67 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IY+G L S + E ++E F YG+I D+ LK + FVEF++ RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKNG-----FGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 NFDGCRL 75
G R+
Sbjct: 60 ELGGERV 66
Score = 102 (41.0 bits), Expect = 4.5e-13, Sum P(2) = 4.5e-13
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEV-SRDSEGTYGVVDYTNPEDMKYAIR 180
+ +RV+V L S SWQDLKD +R+ G + +AE R +E ++ + P D+K I
Sbjct: 127 TRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHKRPNEA---LLCFATPSDLKRCIE 183
Query: 181 KLD 183
K D
Sbjct: 184 KCD 186
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 151 (58.2 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 35/78 (44%), Positives = 49/78 (62%)
Query: 4 RFSRT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62
R+ T +YVG L S R ++E LF +YGR+ D+++K R Y FVEF + RDA+DA
Sbjct: 7 RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMK---RD--YAFVEFGDPRDADDAR 61
Query: 63 RGRDGYNFDGCRLRVELA 80
DG +FDG R+ VE +
Sbjct: 62 HYLDGRDFDGSRITVEFS 79
Score = 38 (18.4 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 11/40 (27%), Positives = 18/40 (45%)
Query: 159 DSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198
D EG+ ++D + P K D + +P GR +V
Sbjct: 215 DDEGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSV 254
>UNIPROTKB|E9PLB0 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:28842 ChiTaRS:RBM4B IPI:IPI00979194
ProteinModelPortal:E9PLB0 SMR:E9PLB0 Ensembl:ENST00000531969
ArrayExpress:E9PLB0 Bgee:E9PLB0 Uniprot:E9PLB0
Length = 143
Score = 116 (45.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 61 (26.5 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>RGD|1306891 [details] [associations]
symbol:Rbm4 "RNA binding motif protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0002190 "cap-independent
translational initiation" evidence=ISO] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003729 "mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494
"cytoplasmic stress granule" evidence=ISO] [GO:0016607 "nuclear
speck" evidence=ISO] [GO:0017148 "negative regulation of
translation" evidence=ISO] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO] [GO:0033554
"cellular response to stress" evidence=ISO] [GO:0035198 "miRNA
binding" evidence=ISO] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=ISO]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISO] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISO] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISO] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISO] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISO] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1306891 RGD:1359343
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:CH473953 UniGene:Rn.203522 HOGENOM:HOG000089965 EMBL:BC086338
IPI:IPI00950131 SMR:Q5U212 STRING:Q5U212 Ensembl:ENSRNOT00000067093
InParanoid:Q5U212 Genevestigator:Q5U212 Uniprot:Q5U212
Length = 143
Score = 116 (45.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 61 (26.5 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|D6R9K7 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 HOGENOM:HOG000089965 IPI:IPI00965408
ProteinModelPortal:D6R9K7 SMR:D6R9K7 Ensembl:ENST00000506523
ArrayExpress:D6R9K7 Bgee:D6R9K7 Uniprot:D6R9K7
Length = 150
Score = 116 (45.9 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 58 (25.5 bits), Expect = 5.8e-12, Sum P(2) = 5.8e-12
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 189
++L+ + G V ++ +D Y V ED AIR LD+TEF++
Sbjct: 92 KELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQD 138
>UNIPROTKB|J3QRR5 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 ProteinModelPortal:J3QRR5
Ensembl:ENST00000578778 Uniprot:J3QRR5
Length = 155
Score = 116 (45.9 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 57 (25.1 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
++L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 KELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>FB|FBgn0260944 [details] [associations]
symbol:Rbp1 "RNA-binding protein 1" species:7227 "Drosophila
melanogaster" [GO:0035327 "transcriptionally active chromatin"
evidence=IDA] [GO:0005634 "nucleus" evidence=NAS;IDA] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS;NAS] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0006376 "mRNA splice site
selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0035327 GO:GO:0045292 GO:GO:0006376 EMBL:L04929 EMBL:AY069252
EMBL:S51691 EMBL:S51740 PIR:A46398 PIR:A47752 PIR:A48110
RefSeq:NP_524307.1 RefSeq:NP_731510.1 UniGene:Dm.2213
ProteinModelPortal:Q02427 SMR:Q02427 IntAct:Q02427 MINT:MINT-277307
STRING:Q02427 PaxDb:Q02427 EnsemblMetazoa:FBtr0082277 GeneID:41294
KEGG:dme:Dmel_CG17136 CTD:5947 FlyBase:FBgn0260944 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 InParanoid:Q02427 OMA:ARECRRG
OrthoDB:EOG4CNP7N PhylomeDB:Q02427 GenomeRNAi:41294 NextBio:823159
Bgee:Q02427 GermOnline:CG17136 Uniprot:Q02427
Length = 144
Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 33/72 (45%), Positives = 46/72 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL S ++E+E F KYG + ++ + PP + FVEFE+ RDAEDA R DG
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNVW--VARNPPGFAFVEFEDRRDAEDATRALDGT 70
Query: 69 NFDGCRLRVELA 80
G R+RVE++
Sbjct: 71 RCCGTRIRVEMS 82
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 123 (48.4 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
Score = 44 (20.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 123 SEYRVIVRGLPSSASWQ 139
+E R+IV L S SWQ
Sbjct: 105 TENRLIVENLSSRVSWQ 121
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 123 (48.4 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
Score = 44 (20.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 123 SEYRVIVRGLPSSASWQ 139
+E R+IV L S SWQ
Sbjct: 106 TENRLIVENLSSRVSWQ 122
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 123 (48.4 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
Score = 44 (20.5 bits), Expect = 3.1e-11, Sum P(2) = 3.1e-11
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 123 SEYRVIVRGLPSSASWQ 139
+E R+IV L S SWQ
Sbjct: 106 TENRLIVENLSSRVSWQ 122
>WB|WBGene00004699 [details] [associations]
symbol:rsp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 105 (42.0 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G LP+ + +VE F YG++ D+ +K + FV+F++ RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNG-----FGFVDFQDQRDADDAVHDLNGK 58
Query: 69 NFDGCRLRVE 78
G R+ +E
Sbjct: 59 ELCGERVILE 68
Score = 99 (39.9 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 19/61 (31%), Positives = 39/61 (63%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181
+ +R+++ L + SWQD+KDH+RK G + ++E + + +V +T+ +D++ A+ K
Sbjct: 110 TRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQ-AIVCFTSHDDLRDAMNK 168
Query: 182 L 182
L
Sbjct: 169 L 169
>UNIPROTKB|Q23120 [details] [associations]
symbol:rsp-2 "Probable splicing factor,
arginine/serine-rich 2" species:6239 "Caenorhabditis elegans"
[GO:0002119 "nematode larval development" evidence=IGI] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] [GO:0008406 "gonad development"
evidence=IGI] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 105 (42.0 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 23/70 (32%), Positives = 41/70 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G LP+ + +VE F YG++ D+ +K + FV+F++ RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMKNG-----FGFVDFQDQRDADDAVHDLNGK 58
Query: 69 NFDGCRLRVE 78
G R+ +E
Sbjct: 59 ELCGERVILE 68
Score = 99 (39.9 bits), Expect = 3.6e-11, Sum P(2) = 3.6e-11
Identities = 19/61 (31%), Positives = 39/61 (63%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181
+ +R+++ L + SWQD+KDH+RK G + ++E + + +V +T+ +D++ A+ K
Sbjct: 110 TRFRLVIDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQ-AIVCFTSHDDLRDAMNK 168
Query: 182 L 182
L
Sbjct: 169 L 169
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 155 (59.6 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 34/74 (45%), Positives = 48/74 (64%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
R +YVG+L ++ R+ ++E +F YG + + I PP + FVEFE+ARDA DA+RG D
Sbjct: 8 RKVYVGDLGNNARKNDLEYVFGAYGSLRSVW--IARNPPGFAFVEFESARDAADAVRGLD 65
Query: 67 GYNFDGCRLRVELA 80
G G R RVEL+
Sbjct: 66 GRTVCGRRARVELS 79
>UNIPROTKB|Q5ZMI0 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
Uniprot:Q5ZMI0
Length = 223
Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 34/78 (43%), Positives = 47/78 (60%)
Query: 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62
GR+ +YVGNL + + E+E F YG + + I PP + FVEFE+ RDAEDA+
Sbjct: 5 GRYETKVYVGNLGTGAGKGELERAFSYYGPLRTVW--IARNPPGFAFVEFEDPRDAEDAV 62
Query: 63 RGRDGYNFDGCRLRVELA 80
G DG G R+RVE++
Sbjct: 63 LGLDGKIICGSRVRVEVS 80
>SGD|S000002840 [details] [associations]
symbol:NPL3 "RNA-binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006406 "mRNA export from nucleus" evidence=IGI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IGI;IMP]
[GO:0005737 "cytoplasm" evidence=IMP] [GO:0005634 "nucleus"
evidence=IEA;IDA;IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006415 "translational termination" evidence=IGI;IMP]
[GO:0008143 "poly(A) RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:2000805 "negative regulation of termination of
RNA polymerase II transcription, poly(A)-coupled" evidence=IMP;IDA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0032968 "positive
regulation of transcription elongation from RNA polymerase II
promoter" evidence=IMP;IDA] [GO:0000993 "RNA polymerase II core
binding" evidence=IPI] [GO:0017148 "negative regulation of
translation" evidence=IDA] [GO:0031370 "eukaryotic initiation
factor 4G binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000002840 EMBL:U33007 GO:GO:0005634 GO:GO:0005737
GO:GO:0005730 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BK006938 GO:GO:0030529 GO:GO:0006406 GO:GO:0000398
GO:GO:0006364 GO:GO:0032968 eggNOG:COG0724 GO:GO:0008143
EMBL:X70951 GO:GO:0006415 GeneTree:ENSGT00570000079107
GO:GO:0031370 RefSeq:NP_010725.3 GeneID:852047 KEGG:sce:YDR437W
KO:K03861 EMBL:X66019 EMBL:M86731 PIR:JN0866 RefSeq:NP_010720.3
PDB:2JVO PDB:2JVR PDB:2OSQ PDB:2OSR PDBsum:2JVO PDBsum:2JVR
PDBsum:2OSQ PDBsum:2OSR ProteinModelPortal:Q01560 SMR:Q01560
DIP:DIP-6464N IntAct:Q01560 MINT:MINT-600838 STRING:Q01560
PaxDb:Q01560 PeptideAtlas:Q01560 EnsemblFungi:YDR432W GeneID:852042
KEGG:sce:YDR432W CYGD:YDR432w OMA:ANQPLEV OrthoDB:EOG4BP4N7
EvolutionaryTrace:Q01560 NextBio:970290 Genevestigator:Q01560
GermOnline:YDR432W GO:GO:2000805 Uniprot:Q01560
Length = 414
Score = 117 (46.2 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 25/66 (37%), Positives = 42/66 (63%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVS-RDSEGTYGVVDYTNPEDMKYAIRKL 182
YR+ ++ LP SWQDLKD R+ + F+ V+ RD +GT G +++ + E + A+ +L
Sbjct: 200 YRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGT-GALEFPSEEILVEALERL 258
Query: 183 DDTEFR 188
++ EFR
Sbjct: 259 NNIEFR 264
Score = 80 (33.2 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 23/76 (30%), Positives = 38/76 (50%)
Query: 3 GRFSRT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDA 61
G S T ++V P D++E E+ ++F +G + ++++ + FVEFE A A A
Sbjct: 120 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKILNG-----FAFVEFEEAESAAKA 174
Query: 62 IRGRDGYNFDGCRLRV 77
I G +F L V
Sbjct: 175 IEEVHGKSFANQPLEV 190
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 70 TLCGCRVRVELSN 82
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 70 TLCGCRVRVELSN 82
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 3 GRFS-RT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
GR+ T +YVGNL + + E+E F YG + + I PP + FVEFE+ RDAED
Sbjct: 5 GRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVW--IARNPPGFAFVEFEDPRDAED 62
Query: 61 AIRGRDGYNFDGCRLRVELA 80
A+RG DG G R+RVEL+
Sbjct: 63 AVRGLDGKVICGSRVRVELS 82
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 70 TLCGCRVRVELSN 82
>UNIPROTKB|C9JAB2 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
Uniprot:C9JAB2
Length = 235
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 3 GRFS-RT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
GR+ T +YVGNL + + E+E F YG + + I PP + FVEFE+ RDAED
Sbjct: 5 GRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVW--IARNPPGFAFVEFEDPRDAED 62
Query: 61 AIRGRDGYNFDGCRLRVELA 80
A+RG DG G R+RVEL+
Sbjct: 63 AVRGLDGKVICGSRVRVELS 82
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 70 TLCGCRVRVELSN 82
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 70 TLCGCRVRVELSN 82
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 70 TLCGCRVRVELSN 82
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 3 GRFS-RT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
GR+ T +YVGNL + + E+E F YG + + I PP + FVEFE+ RDAED
Sbjct: 5 GRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVW--IARNPPGFAFVEFEDPRDAED 62
Query: 61 AIRGRDGYNFDGCRLRVELA 80
A+RG DG G R+RVEL+
Sbjct: 63 AVRGLDGKVICGSRVRVELS 82
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 70 TLCGCRVRVELSN 82
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 11 VYVGNLGNNGNKSELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDATDAVRELDGR 68
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 69 TLCGCRVRVELSN 81
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 150 (57.9 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 3 GRFS-RT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
GR+ T +YVGNL + + E+E F YG + + I PP + FVEFE+ RDAED
Sbjct: 5 GRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVW--IARNPPGFAFVEFEDPRDAED 62
Query: 61 AIRGRDGYNFDGCRLRVELA 80
A+RG DG G R+RVEL+
Sbjct: 63 AVRGLDGKVICGSRVRVELS 82
>UNIPROTKB|Q16629 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
Ensembl:ENST00000431066 Ensembl:ENST00000443213
Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
Length = 238
Score = 150 (57.9 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 3 GRFS-RT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
GR+ T +YVGNL + + E+E F YG + + I PP + FVEFE+ RDAED
Sbjct: 5 GRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVW--IARNPPGFAFVEFEDPRDAED 62
Query: 61 AIRGRDGYNFDGCRLRVELA 80
A+RG DG G R+RVEL+
Sbjct: 63 AVRGLDGKVICGSRVRVELS 82
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 150 (57.9 bits), Expect = 9.6e-11, P = 9.6e-11
Identities = 37/80 (46%), Positives = 49/80 (61%)
Query: 3 GRFS-RT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
GR+ T +YVGNL + + E+E F YG + + I PP + FVEFE+ RDAED
Sbjct: 5 GRYGGETKVYVGNLGTGAGKGELERAFSYYGPLRTVW--IARNPPGFAFVEFEDPRDAED 62
Query: 61 AIRGRDGYNFDGCRLRVELA 80
A+RG DG G R+RVEL+
Sbjct: 63 AVRGLDGKVICGSRVRVELS 82
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/73 (43%), Positives = 46/73 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDAADAVRELDGG 69
Query: 69 NFDGCRLRVELAH 81
GCR+RVEL++
Sbjct: 70 TLCGCRVRVELSN 82
>UNIPROTKB|F1S4R5 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
Length = 268
Score = 151 (58.2 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 36/76 (47%), Positives = 48/76 (63%)
Query: 6 SRT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRG 64
S+T +YVGNL + + E+E F YG + + I PP + FVEFE+ RDAEDA+RG
Sbjct: 36 SKTKVYVGNLGTGAGKGELERAFSYYGPLRTVW--IARNPPGFAFVEFEDPRDAEDAVRG 93
Query: 65 RDGYNFDGCRLRVELA 80
DG G R+RVEL+
Sbjct: 94 LDGKVICGSRVRVELS 109
>MGI|MGI:1926232 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
Length = 267
Score = 150 (57.9 bits), Expect = 1.8e-10, P = 1.8e-10
Identities = 37/79 (46%), Positives = 48/79 (60%)
Query: 3 GRFSRT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDA 61
G S T +YVGNL + + E+E F YG + + I PP + FVEFE+ RDAEDA
Sbjct: 35 GGDSETKVYVGNLGTGAGKGELERAFSYYGPLRTVW--IARNPPGFAFVEFEDPRDAEDA 92
Query: 62 IRGRDGYNFDGCRLRVELA 80
+RG DG G R+RVEL+
Sbjct: 93 VRGLDGKVICGSRVRVELS 111
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
Identities = 31/73 (42%), Positives = 45/73 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 16 VYVGNLGNSGNKTELERAFGYYGPLRSVW--VARNPPGFAFVEFEDPRDATDAVRELDGR 73
Query: 69 NFDGCRLRVELAH 81
GCR+RVE+++
Sbjct: 74 TLCGCRVRVEMSN 86
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 150 (57.9 bits), Expect = 2.3e-10, P = 2.3e-10
Identities = 35/76 (46%), Positives = 48/76 (63%)
Query: 4 RFSRT-IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62
R+ T +YVG L S R ++E LF +YGR+ D+++K R Y FVEF + RDA+DA
Sbjct: 7 RYGNTRLYVGRLSSRTRTRDLERLFSRYGRVRDVDMK---RD--YAFVEFSDPRDADDAR 61
Query: 63 RGRDGYNFDGCRLRVE 78
DG +FDG R+ VE
Sbjct: 62 YYLDGRDFDGSRITVE 77
>UNIPROTKB|J3QQV5 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001701 "in utero embryonic development" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471109
UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1 EMBL:AC015813
ProteinModelPortal:J3QQV5 Ensembl:ENST00000583741 Uniprot:J3QQV5
Length = 65
Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 29/48 (60%), Positives = 35/48 (72%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENAR 56
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ R
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPR 65
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 147 (56.8 bits), Expect = 3.4e-10, P = 3.4e-10
Identities = 31/73 (42%), Positives = 47/73 (64%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG+L + + E+E F YG + + + PP + FVE+E+ARDAEDA++G DG
Sbjct: 16 VYVGDLGNGAAKGELERAFSYYGPLRSVW--VARNPPGFAFVEYEDARDAEDAVKGMDGK 73
Query: 69 NFDGCRLRVELAH 81
G R+RVEL++
Sbjct: 74 VLCGARVRVELSN 86
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 34/73 (46%), Positives = 45/73 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + E E+ED F +G I + + RPP Y F++FE++RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRSFGVIRSVW--VARRPPGYAFLDFEDSRDARDAIREVDGK 61
Query: 69 NFDGCRLRVELAH 81
N G R VE +H
Sbjct: 62 N--GWR--VEQSH 70
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 33/73 (45%), Positives = 44/73 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + E E+ED F +G + + + RPP Y F++FE+ RDA DAIR DG
Sbjct: 4 VYVGNLDPRVTERELEDEFRAFGVVRSVW--VARRPPGYAFLDFEDPRDARDAIRALDGK 61
Query: 69 NFDGCRLRVELAH 81
N G R VE +H
Sbjct: 62 N--GWR--VEQSH 70
>ZFIN|ZDB-GENE-050913-95 [details] [associations]
symbol:srsf7 "serine/arginine-rich splicing factor
7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
Uniprot:A3KNI1
Length = 210
Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/72 (44%), Positives = 44/72 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + + E+E F YG + + I P + FVEFE+ RDAED++RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFGYYGPLRSVW--IARNPAGFAFVEFEDPRDAEDSVRGLDGK 70
Query: 69 NFDGCRLRVELA 80
G R+RVEL+
Sbjct: 71 VICGSRVRVELS 82
>UNIPROTKB|E9PB51 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AP001157
HGNC:HGNC:9901 ChiTaRS:RBM4 IPI:IPI00974578
ProteinModelPortal:E9PB51 SMR:E9PB51 Ensembl:ENST00000510173
ArrayExpress:E9PB51 Bgee:E9PB51 Uniprot:E9PB51
Length = 240
Score = 116 (45.9 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 106 (42.4 bits), Expect = 0.00029, P = 0.00029
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 57 (25.1 bits), Expect = 3.1e-09, Sum P(2) = 3.1e-09
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
++L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 KELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 28/81 (34%), Positives = 40/81 (49%)
Query: 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAED 60
G S IYVGNLP + + DLF G ++ + P R + V+FEN DA
Sbjct: 306 GPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAAS 365
Query: 61 AIRGRDGYNFDGCRLRVELAH 81
+I +GY + G L++ AH
Sbjct: 366 SIEKLNGYRYGGRPLQLSYAH 386
Score = 105 (42.0 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YGVVDYTNPEDMKYAIRKL 182
++ V LP + WQDLKD R+AG V A++ + EG G+V ++ ++ +AI+ L
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQML 239
Query: 183 DDTEF 187
+T+F
Sbjct: 240 HNTDF 244
Score = 87 (35.7 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 21/68 (30%), Positives = 35/68 (51%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYC-FVEFENARDAEDAIRG 64
R +YVGNL +R +E+++ + G +L+ E L +P C +E+ A +A AI+
Sbjct: 77 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKT 136
Query: 65 RDGYNFDG 72
F G
Sbjct: 137 LSNQKFMG 144
Score = 84 (34.6 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRIL--DIELKIPPRPPCYCFVEFENARDAEDAIRG 64
R ++VGNLP ++R +++DLF + G ++ DI++ R V + ++A AI+
Sbjct: 179 RQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQM 238
Query: 65 RDGYNFDGCRLRVEL 79
+F G L V L
Sbjct: 239 LHNTDFMGRTLEVRL 253
Score = 62 (26.9 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 18/60 (30%), Positives = 29/60 (48%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YGVVDYTNPEDMKYAIRKLD 183
+ V LP + S ++L D G V A ++ + G +GVV + N D +I KL+
Sbjct: 312 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLN 371
>MGI|MGI:1913954 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IDA] [GO:0007623 "circadian rhythm" evidence=IDA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010628 "positive regulation of gene
expression" evidence=IDA] [GO:0032922 "circadian regulation of gene
expression" evidence=IDA] [GO:0043153 "entrainment of circadian
clock by photoperiod" evidence=IDA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 MGI:MGI:1913954
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:BC019488 IPI:IPI00177224
RefSeq:NP_079993.2 UniGene:Mm.396734 ProteinModelPortal:Q8VE92
SMR:Q8VE92 PhosphoSite:Q8VE92 PaxDb:Q8VE92 PRIDE:Q8VE92
Ensembl:ENSMUST00000036744 GeneID:66704 KEGG:mmu:66704
UCSC:uc008gar.1 InParanoid:Q8VE92 NextBio:322415 Bgee:Q8VE92
CleanEx:MM_RBM4B Genevestigator:Q8VE92
GermOnline:ENSMUSG00000033760 Uniprot:Q8VE92
Length = 357
Score = 116 (45.9 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 0.00045, P = 0.00045
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 61 (26.5 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>RGD|1359343 [details] [associations]
symbol:Rbm4b "RNA binding motif protein 4B" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006417 "regulation
of translation" evidence=ISO;ISS] [GO:0007623 "circadian rhythm"
evidence=ISO;ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA;ISO] [GO:0032922
"circadian regulation of gene expression" evidence=ISO;ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1359343
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747
RefSeq:NP_001007015.2 UniGene:Rn.203522 ProteinModelPortal:Q64LC9
SMR:Q64LC9 IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 116 (45.9 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 0.00045, P = 0.00045
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 61 (26.5 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q64LC9 [details] [associations]
symbol:Rbm4b "RNA-binding protein 4B" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1359343 GO:GO:0006417 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0032922
GO:GO:0010628 Gene3D:4.10.60.10 GO:GO:0043153 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:83759 OMA:VYYNDAY
EMBL:AY303541 EMBL:BC086416 IPI:IPI00471747 RefSeq:NP_001007015.2
UniGene:Rn.203522 ProteinModelPortal:Q64LC9 SMR:Q64LC9
IntAct:Q64LC9 STRING:Q64LC9 Ensembl:ENSRNOT00000026605
GeneID:474154 KEGG:rno:474154 UCSC:RGD:1359343 InParanoid:Q64LC9
NextBio:697196 Genevestigator:Q64LC9 GermOnline:ENSRNOG00000019650
Uniprot:Q64LC9
Length = 357
Score = 116 (45.9 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 0.00045, P = 0.00045
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 61 (26.5 bits), Expect = 6.7e-09, Sum P(2) = 6.7e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q2KIV3 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 GeneTree:ENSGT00390000020883
KO:K13187 HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 OMA:VYYNDAY EMBL:DAAA02063594 EMBL:BC112497
IPI:IPI00711574 RefSeq:NP_001039393.1 UniGene:Bt.88781 SMR:Q2KIV3
Ensembl:ENSBTAT00000007153 GeneID:505756 KEGG:bta:505756
InParanoid:Q2KIV3 NextBio:20867298 Uniprot:Q2KIV3
Length = 359
Score = 116 (45.9 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 0.00045, P = 0.00045
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 61 (26.5 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|E2RSD7 [details] [associations]
symbol:RBM4B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=IEA] [GO:0032922 "circadian regulation of
gene expression" evidence=IEA] [GO:0010628 "positive regulation of
gene expression" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0032922 GO:GO:0010628
Gene3D:4.10.60.10 GO:GO:0043153 GeneTree:ENSGT00390000020883
KO:K13187 CTD:83759 OMA:VYYNDAY EMBL:AAEX03011624
RefSeq:XP_533216.1 ProteinModelPortal:E2RSD7
Ensembl:ENSCAFT00000019655 GeneID:476008 KEGG:cfa:476008
NextBio:20851739 Uniprot:E2RSD7
Length = 359
Score = 116 (45.9 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 0.00045, P = 0.00045
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 61 (26.5 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q9BQ04 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010628 "positive
regulation of gene expression" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=ISS] [GO:0007623 "circadian rhythm" evidence=ISS]
[GO:0032922 "circadian regulation of gene expression" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 EMBL:CH471076 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W EMBL:AK095158 EMBL:BC003503
EMBL:BC004951 IPI:IPI00027838 RefSeq:NP_113680.1 UniGene:Hs.618713
PDB:2DGT PDBsum:2DGT ProteinModelPortal:Q9BQ04 SMR:Q9BQ04
IntAct:Q9BQ04 MINT:MINT-1379498 STRING:Q9BQ04 PhosphoSite:Q9BQ04
DMDM:62511129 SWISS-2DPAGE:Q9BQ04 PaxDb:Q9BQ04 PeptideAtlas:Q9BQ04
PRIDE:Q9BQ04 DNASU:83759 Ensembl:ENST00000310046
Ensembl:ENST00000525754 GeneID:83759 KEGG:hsa:83759 UCSC:uc001oja.3
CTD:83759 GeneCards:GC11M066432 HGNC:HGNC:28842 neXtProt:NX_Q9BQ04
PharmGKB:PA134977404 InParanoid:Q9BQ04 OMA:VYYNDAY PhylomeDB:Q9BQ04
ChiTaRS:RBM4B EvolutionaryTrace:Q9BQ04 GenomeRNAi:83759
NextBio:72795 ArrayExpress:Q9BQ04 Bgee:Q9BQ04 CleanEx:HS_RBM4B
Genevestigator:Q9BQ04 GermOnline:ENSG00000173914 Uniprot:Q9BQ04
Length = 359
Score = 116 (45.9 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 0.00045, P = 0.00045
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 61 (26.5 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q06AT9 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0007623 "circadian rhythm" evidence=ISS] [GO:0006417
"regulation of translation" evidence=ISS] [GO:0043153 "entrainment
of circadian clock by photoperiod" evidence=ISS] [GO:0032922
"circadian regulation of gene expression" evidence=ISS] [GO:0005730
"nucleolus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0006417 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0032922 Gene3D:4.10.60.10 GO:GO:0043153
eggNOG:NOG294108 KO:K13187 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
CTD:83759 EMBL:DQ917636 RefSeq:NP_001116660.1 UniGene:Ssc.53769
ProteinModelPortal:Q06AT9 SMR:Q06AT9 GeneID:100144418
KEGG:ssc:100144418 Uniprot:Q06AT9
Length = 359
Score = 116 (45.9 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 0.00045, P = 0.00045
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 61 (26.5 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q9BDY9 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9986
"Oryctolagus cuniculus" [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=ISS] [GO:0002190
"cap-independent translational initiation" evidence=ISS]
[GO:0002192 "IRES-dependent translational initiation" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0017148
"negative regulation of translation" evidence=ISS] [GO:0032055
"negative regulation of translation in response to stress"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS] [GO:0035278
"negative regulation of translation involved in gene silencing by
miRNA" evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0045947 "negative regulation of translational
initiation" evidence=ISS] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=ISS] [GO:0051149 "positive
regulation of muscle cell differentiation" evidence=ISS]
[GO:0051403 "stress-activated MAPK cascade" evidence=ISS]
[GO:0097157 "pre-mRNA intronic binding" evidence=ISS] [GO:0097158
"pre-mRNA intronic pyrimidine-rich binding" evidence=ISS]
[GO:0097167 "circadian regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0030154 GO:GO:0005730
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0045947
GO:GO:0016607 GO:GO:0008270 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0046822 GO:GO:0051149 GO:GO:0003730 GO:GO:0032922
GO:GO:0010628 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 CTD:38811
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W OMA:VYYNDAY GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:AF233063
RefSeq:NP_001075548.1 UniGene:Ocu.2534 ProteinModelPortal:Q9BDY9
SMR:Q9BDY9 PRIDE:Q9BDY9 Ensembl:ENSOCUT00000006692 GeneID:100008755
Uniprot:Q9BDY9
Length = 359
Score = 116 (45.9 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 0.00045, P = 0.00045
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 61 (26.5 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|D4A1W5 [details] [associations]
symbol:Rbm4 "Protein Rbm4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 RGD:1306891
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00371612
ProteinModelPortal:D4A1W5 Ensembl:ENSRNOT00000026611
ArrayExpress:D4A1W5 Uniprot:D4A1W5
Length = 361
Score = 116 (45.9 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 107 (42.7 bits), Expect = 0.00046, P = 0.00046
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 61 (26.5 bits), Expect = 7.0e-09, Sum P(2) = 7.0e-09
Identities = 17/50 (34%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 QELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 30/72 (41%), Positives = 46/72 (63%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L+I+LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEIDLKNG-----YGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELA 80
G R+ VE A
Sbjct: 59 ELCGERVIVEHA 70
>TAIR|locus:2039975 [details] [associations]
symbol:RS31a "arginine/serine-rich splicing factor 31a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC006418 UniGene:At.13832 UniGene:At.28553
HSSP:P52298 HOGENOM:HOG000276234 KO:K12893 EMBL:AY065237
EMBL:BT000995 EMBL:AK317202 IPI:IPI00520334 PIR:A84905
RefSeq:NP_182184.1 ProteinModelPortal:Q9ZPX8 SMR:Q9ZPX8
IntAct:Q9ZPX8 PaxDb:Q9ZPX8 PRIDE:Q9ZPX8 EnsemblPlants:AT2G46610.1
GeneID:819273 KEGG:ath:AT2G46610 TAIR:At2g46610 eggNOG:NOG254972
InParanoid:Q9ZPX8 OMA:TRERDME PhylomeDB:Q9ZPX8
ProtClustDB:CLSN2683469 ArrayExpress:Q9ZPX8 Genevestigator:Q9ZPX8
Uniprot:Q9ZPX8
Length = 250
Score = 132 (51.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 35/76 (46%), Positives = 44/76 (57%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
R +YVGN D R ++E LF K+GR+ +++K Y FV FE+ RDAEDAIR D
Sbjct: 2 RHVYVGNFDYDTRHSDLERLFSKFGRVKRVDMKSG-----YAFVYFEDERDAEDAIRRTD 56
Query: 67 GYNFD-GCR-LRVELA 80
F G R L VE A
Sbjct: 57 NTTFGYGRRKLSVEWA 72
>UNIPROTKB|Q3MHX3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9913 "Bos
taurus" [GO:0097167 "circadian regulation of translation"
evidence=ISS] [GO:0002192 "IRES-dependent translational initiation"
evidence=ISS] [GO:0002190 "cap-independent translational
initiation" evidence=ISS] [GO:0035198 "miRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS] [GO:0046822
"regulation of nucleocytoplasmic transport" evidence=ISS]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0036002 "pre-mRNA binding" evidence=ISS]
[GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0051403 "stress-activated MAPK cascade"
evidence=ISS] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=ISS] [GO:0045947 "negative regulation of
translational initiation" evidence=ISS] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=ISS] [GO:0033554 "cellular response to stress"
evidence=ISS] [GO:0032055 "negative regulation of translation in
response to stress" evidence=ISS] [GO:0017148 "negative regulation
of translation" evidence=ISS] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0030154 "cell differentiation" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0030154 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0046872 GO:GO:0045947 GO:GO:0016607 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 GO:GO:0000381
eggNOG:NOG294108 GeneTree:ENSGT00390000020883 KO:K13187
HOGENOM:HOG000026790 HOVERGEN:HBG062217 OrthoDB:EOG4NP74W
EMBL:BT030489 EMBL:BC104570 IPI:IPI00689636 RefSeq:NP_001070478.1
UniGene:Bt.20177 ProteinModelPortal:Q3MHX3 SMR:Q3MHX3
Ensembl:ENSBTAT00000000541 GeneID:767937 KEGG:bta:767937 CTD:5936
InParanoid:Q3MHX3 OMA:IPTIDTC NextBio:20918294 GO:GO:0097158
GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 Uniprot:Q3MHX3
Length = 362
Score = 116 (45.9 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 106 (42.4 bits), Expect = 0.00065, P = 0.00065
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 57 (25.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
++L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 KELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q9BWF3 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030154
"cell differentiation" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0051149 "positive regulation of muscle cell
differentiation" evidence=IDA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0046822 "regulation of
nucleocytoplasmic transport" evidence=IDA] [GO:0005654
"nucleoplasm" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043153 "entrainment of circadian clock by
photoperiod" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0097157 "pre-mRNA intronic binding" evidence=IDA]
[GO:0097158 "pre-mRNA intronic pyrimidine-rich binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0032055
"negative regulation of translation in response to stress"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0033554 "cellular response to stress"
evidence=IDA] [GO:0051403 "stress-activated MAPK cascade"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0045947
"negative regulation of translational initiation" evidence=IDA]
[GO:0035198 "miRNA binding" evidence=IDA] [GO:0035278 "negative
regulation of translation involved in gene silencing by miRNA"
evidence=IDA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0002192 "IRES-dependent translational initiation" evidence=IDA]
[GO:0002190 "cap-independent translational initiation"
evidence=IDA] [GO:0097167 "circadian regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0006396 GO:GO:0051149
GO:GO:0003730 GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10
GO:GO:0051403 GO:GO:0010494 GO:GO:0043153 EMBL:AP001157
GO:GO:0000381 eggNOG:NOG294108 KO:K13187 HOGENOM:HOG000026790
HOVERGEN:HBG062217 OrthoDB:EOG4NP74W CTD:5936 OMA:IPTIDTC
GO:GO:0097158 GO:GO:0097167 GO:GO:0002192 GO:GO:0032055 EMBL:U89505
EMBL:AK097592 EMBL:AK303984 EMBL:AL832566 EMBL:BC000307
EMBL:BC021120 EMBL:BC032735 EMBL:BC064960 IPI:IPI00003704
IPI:IPI00556034 IPI:IPI00908491 IPI:IPI00940890
RefSeq:NP_001185772.1 RefSeq:NP_001185773.1 RefSeq:NP_002887.2
UniGene:Hs.523822 UniGene:Hs.728823 PDB:2DNQ PDBsum:2DNQ
ProteinModelPortal:Q9BWF3 SMR:Q9BWF3 DIP:DIP-44199N IntAct:Q9BWF3
MINT:MINT-1187795 STRING:Q9BWF3 PhosphoSite:Q9BWF3 DMDM:62511089
PaxDb:Q9BWF3 PRIDE:Q9BWF3 DNASU:5936 Ensembl:ENST00000310092
Ensembl:ENST00000396053 Ensembl:ENST00000398692
Ensembl:ENST00000408993 Ensembl:ENST00000409406
Ensembl:ENST00000483858 Ensembl:ENST00000530235
Ensembl:ENST00000532968 GeneID:5936 KEGG:hsa:5936 UCSC:uc001oiv.3
UCSC:uc001oiw.2 UCSC:uc001oix.2 GeneCards:GC11P066406
HGNC:HGNC:9901 MIM:602571 neXtProt:NX_Q9BWF3 PharmGKB:PA34266
ChiTaRS:RBM4 EvolutionaryTrace:Q9BWF3 GenomeRNAi:5936 NextBio:23140
ArrayExpress:Q9BWF3 Bgee:Q9BWF3 CleanEx:HS_RBM4
Genevestigator:Q9BWF3 GermOnline:ENSG00000173933 Uniprot:Q9BWF3
Length = 364
Score = 116 (45.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 106 (42.4 bits), Expect = 0.00066, P = 0.00066
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 57 (25.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
++L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 KELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|Q4R979 [details] [associations]
symbol:RBM4 "RNA-binding protein 4" species:9541 "Macaca
fascicularis" [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0002190 "cap-independent
translational initiation" evidence=ISS] [GO:0002192 "IRES-dependent
translational initiation" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016607
"nuclear speck" evidence=ISS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0032055 "negative regulation of
translation in response to stress" evidence=ISS] [GO:0033554
"cellular response to stress" evidence=ISS] [GO:0035198 "miRNA
binding" evidence=ISS] [GO:0035278 "negative regulation of
translation involved in gene silencing by miRNA" evidence=ISS]
[GO:0036002 "pre-mRNA binding" evidence=ISS] [GO:0043153
"entrainment of circadian clock by photoperiod" evidence=ISS]
[GO:0045947 "negative regulation of translational initiation"
evidence=ISS] [GO:0046822 "regulation of nucleocytoplasmic
transport" evidence=ISS] [GO:0051149 "positive regulation of muscle
cell differentiation" evidence=ISS] [GO:0051403 "stress-activated
MAPK cascade" evidence=ISS] [GO:0097157 "pre-mRNA intronic binding"
evidence=ISS] [GO:0097158 "pre-mRNA intronic pyrimidine-rich
binding" evidence=ISS] [GO:0097167 "circadian regulation of
translation" evidence=ISS] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0030154
GO:GO:0005730 GO:GO:0008380 GO:GO:0000166 GO:GO:0046872
GO:GO:0045947 GO:GO:0016607 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0046822 GO:GO:0051149 GO:GO:0003730
GO:GO:0035198 GO:GO:0035278 Gene3D:4.10.60.10 GO:GO:0051403
GO:GO:0010494 GO:GO:0043153 GO:GO:0000381 HSSP:Q99K48
HOVERGEN:HBG062217 GO:GO:0097158 GO:GO:0097167 GO:GO:0002192
GO:GO:0032055 EMBL:AB168217 ProteinModelPortal:Q4R979 SMR:Q4R979
PRIDE:Q4R979 Uniprot:Q4R979
Length = 364
Score = 116 (45.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 106 (42.4 bits), Expect = 0.00066, P = 0.00066
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 57 (25.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
++L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 KELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|E2RS70 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
KO:K13187 CTD:5936 OMA:IPTIDTC EMBL:AAEX03011624 RefSeq:XP_852303.1
ProteinModelPortal:E2RS70 Ensembl:ENSCAFT00000019680 GeneID:610648
KEGG:cfa:610648 NextBio:20896200 Uniprot:E2RS70
Length = 365
Score = 116 (45.9 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
Score = 106 (42.4 bits), Expect = 0.00066, P = 0.00066
Identities = 25/75 (33%), Positives = 39/75 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+ V+L+
Sbjct: 132 DNTEFQGKRMHVQLS 146
Score = 57 (25.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
++L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 92 KELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
>UNIPROTKB|F1LZA3 [details] [associations]
symbol:F1LZA3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00776911
Ensembl:ENSRNOT00000038472 Uniprot:F1LZA3
Length = 262
Score = 132 (51.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 31/72 (43%), Positives = 42/72 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + + E+E YG + + I PP + FVEFE+ RDAED +RG DG
Sbjct: 16 VYVGNLGTGAGKGELERALSYYGSLRTVW--IARNPPGFAFVEFEDPRDAEDLVRGLDGK 73
Query: 69 NFDGCRLRVELA 80
G +RVEL+
Sbjct: 74 VICGSGVRVELS 85
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 132 (51.5 bits), Expect = 1.9e-08, P = 1.9e-08
Identities = 33/76 (43%), Positives = 46/76 (60%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
R ++VGN + R+ ++E LF KYGR+ +++K Y FV FE+ RDAEDAIR D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKSG-----YAFVYFEDERDAEDAIRKLD 56
Query: 67 GYNF--DGCRLRVELA 80
+ F + RL VE A
Sbjct: 57 NFPFGYEKRRLSVEWA 72
>SGD|S000004949 [details] [associations]
symbol:HRB1 "Poly(A+) RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0016021 "integral to membrane"
evidence=ISM] [GO:0016973 "poly(A)+ mRNA export from nucleus"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004949 GO:GO:0016021 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BK006947 GO:GO:0003723
eggNOG:COG0724 EMBL:X77114 GO:GO:0016973
GeneTree:ENSGT00410000025635 HOGENOM:HOG000111155 OrthoDB:EOG4F21C2
EMBL:U02536 EMBL:Z71280 EMBL:DQ881449 EMBL:EF123128 PIR:S45459
RefSeq:NP_014394.2 ProteinModelPortal:P38922 SMR:P38922
DIP:DIP-4959N IntAct:P38922 MINT:MINT-475842 STRING:P38922
PaxDb:P38922 PeptideAtlas:P38922 EnsemblFungi:YNL004W GeneID:855728
KEGG:sce:YNL004W CYGD:YNL004w OMA:KTHEVIV NextBio:980105
Genevestigator:P38922 GermOnline:YNL004W Uniprot:P38922
Length = 454
Score = 115 (45.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 26/80 (32%), Positives = 41/80 (51%)
Query: 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPR--PPCYCFVEFENARDAED 60
G +R IY NLP + ++ DLF G++ + EL+ + P VE++N DA+
Sbjct: 372 GERNRLIYCSNLPFSTAKSDLYDLFETIGKVNNAELRYDSKGAPTGIAVVEYDNVDDADV 431
Query: 61 AIRGRDGYNFDGCRLRVELA 80
I + YN+ GC L + A
Sbjct: 432 CIERLNNYNYGGCDLDISYA 451
Score = 107 (42.7 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY---GVVDYTNPEDMKYAIRK 181
+ VIV+ LP+S +WQ LKD ++ G+V A+V D +G G V + + +D+ AI K
Sbjct: 261 HEVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGVSTGSGTVSFYDIKDLHRAIEK 320
Score = 75 (31.5 bits), Expect = 2.5e-08, Sum P(2) = 2.5e-08
Identities = 22/68 (32%), Positives = 36/68 (52%)
Query: 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCF--VEFENARDAEDAI 62
+S +I+VGNL D ++ + F + G+++ ++ I R VEF N+ D + AI
Sbjct: 159 YSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADI-ITSRGHHRGMGTVEFTNSDDVDRAI 217
Query: 63 RGRDGYNF 70
R DG F
Sbjct: 218 RQYDGAFF 225
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 127 (49.8 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 32/73 (43%), Positives = 44/73 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + E E+ED F +G + ++ + RPP Y F+EF++ RDA DAI D
Sbjct: 4 VYVGNLDPRVTERELEDEFKAFGVLRNVW--VARRPPGYAFLEFDDERDALDAISALDRK 61
Query: 69 NFDGCRLRVELAH 81
N G R VEL+H
Sbjct: 62 N--GWR--VELSH 70
>UNIPROTKB|F1M582 [details] [associations]
symbol:F1M582 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR012677 GO:GO:0000166 Gene3D:3.30.70.330
GeneTree:ENSGT00700000104103 IPI:IPI00557396
Ensembl:ENSRNOT00000034162 Uniprot:F1M582
Length = 284
Score = 112 (44.5 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 128 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183
++R L S +SWQDLKD MR+ G+ +A+ ++ GV+++++ DMK A+ KLD
Sbjct: 76 LLRNLSSRSSWQDLKDFMRQ-GEGTYADAHKERTDE-GVIEFSSYSDMKCALNKLD 129
Score = 60 (26.2 bits), Expect = 2.7e-08, Sum P(2) = 2.7e-08
Identities = 11/16 (68%), Positives = 15/16 (93%)
Query: 47 YCFVEFENARDAEDAI 62
Y F+EFE++RDA+DAI
Sbjct: 7 YDFMEFEDSRDADDAI 22
>DICTYBASE|DDB_G0286007 [details] [associations]
symbol:rbm8A "RNA-binding motif protein 8A"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0286007
GenomeReviews:CM000153_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12876 EMBL:AAFI02000084 eggNOG:NOG246776
RefSeq:XP_637941.1 ProteinModelPortal:Q54ME8 SMR:Q54ME8
STRING:Q54ME8 EnsemblProtists:DDB0233616 GeneID:8625394
KEGG:ddi:DDB_G0286007 InParanoid:Q54ME8 OMA:SERYSGK Uniprot:Q54ME8
Length = 187
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPC---YCFVEFENARDAEDAIRGR 65
I+V N+ +++E ++ D+F +YG+I +I L I R Y +E+E +AEDAI+
Sbjct: 73 IFVRNIQEEVQEPDLMDIFAEYGQIKNIHLNIDRRTGFTKGYALIEYEKRSEAEDAIKNG 132
Query: 66 DGYNFDGCRLRVELA 80
GY G +L V+ A
Sbjct: 133 SGYELAGLKLSVDWA 147
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + E+ED F +G + + + +PP + F++F++ RDAEDAIR DG
Sbjct: 4 VYVGNLDPRVTAREIEDEFRVFGVLRSVW--VARKPPGFAFIDFDDRRDAEDAIRDLDGK 61
Query: 69 NFDGCRLRVELA 80
N G R VEL+
Sbjct: 62 N--GWR--VELS 69
>TAIR|locus:2147625 [details] [associations]
symbol:AT5G19960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HSSP:P33240 EMBL:AY093121 EMBL:BT003382 IPI:IPI00545520
RefSeq:NP_568388.1 UniGene:At.31237 ProteinModelPortal:Q8RWF8
SMR:Q8RWF8 IntAct:Q8RWF8 STRING:Q8RWF8 PRIDE:Q8RWF8
EnsemblPlants:AT5G19960.1 GeneID:832118 KEGG:ath:AT5G19960
TAIR:At5g19960 InParanoid:Q8RWF8 OMA:GKCYGFV PhylomeDB:Q8RWF8
ProtClustDB:CLSN2689809 ArrayExpress:Q8RWF8 Genevestigator:Q8RWF8
Uniprot:Q8RWF8
Length = 337
Score = 131 (51.2 bits), Expect = 4.6e-08, P = 4.6e-08
Identities = 30/72 (41%), Positives = 40/72 (55%)
Query: 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGR 65
++YVG LP DI E V +F YG +L +++ R CY FV F N R A+DAI
Sbjct: 8 SVYVGGLPYDITEEAVRRVFSIYGSVLTVKIVNDRSVRGKCYGFVTFSNRRSADDAIEDM 67
Query: 66 DGYNFDGCRLRV 77
DG + G +RV
Sbjct: 68 DGKSIGGRAVRV 79
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 125 (49.1 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G +P + RE +VE YG+I +I +K + FV+FE++RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYG-----FAFVDFEDSRDAEDACHDLDGK 58
Query: 69 NFDGCRLR--VELA 80
+G +R VE+A
Sbjct: 59 TMEGSSMRLVVEMA 72
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 125 (49.1 bits), Expect = 4.8e-08, P = 4.8e-08
Identities = 29/74 (39%), Positives = 44/74 (59%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G +P + RE +VE YG+I +I +K + FV+FE++RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKYG-----FAFVDFEDSRDAEDACHDLDGK 58
Query: 69 NFDGCRLR--VELA 80
+G +R VE+A
Sbjct: 59 TMEGSSMRLVVEMA 72
>TAIR|locus:2131864 [details] [associations]
symbol:RS40 "arginine/serine-rich splicing factor 40"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS;RCA] [GO:0005681
"spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AL022197 GO:GO:0003723
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12893 EMBL:X99437
EMBL:U76607 IPI:IPI00520315 PIR:T05797 RefSeq:NP_001190837.1
RefSeq:NP_194280.1 UniGene:At.10187 ProteinModelPortal:P92965
SMR:P92965 IntAct:P92965 STRING:P92965 PaxDb:P92965 PRIDE:P92965
EnsemblPlants:AT4G25500.1 EnsemblPlants:AT4G25500.4 GeneID:828654
KEGG:ath:AT4G25500 TAIR:At4g25500 eggNOG:NOG298768
InParanoid:P92965 OMA:KRERMSP PhylomeDB:P92965
ProtClustDB:CLSN2685694 Genevestigator:P92965 Uniprot:P92965
Length = 350
Score = 131 (51.2 bits), Expect = 5.0e-08, P = 5.0e-08
Identities = 31/74 (41%), Positives = 44/74 (59%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
+ ++ GN D RE ++E LF KYG++ +++K + FV E+ RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDAREGDLERLFRKYGKVERVDMKAG-----FAFVYMEDERDAEDAIRALD 56
Query: 67 GYNFD--GCRLRVE 78
+ F G RLRVE
Sbjct: 57 RFEFGRKGRRLRVE 70
>WB|WBGene00000774 [details] [associations]
symbol:cpf-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0006898 "receptor-mediated
endocytosis" evidence=IMP] [GO:0040027 "negative regulation of
vulval development" evidence=IMP] [GO:0016607 "nuclear speck"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0006898
GO:GO:0016246 GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330
GO:GO:0000003 GO:GO:0003676 GO:GO:0040027 eggNOG:COG0724 KO:K14407
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
GeneTree:ENSGT00550000074641 HSSP:P33240 EMBL:Z83230 PIR:T22767
RefSeq:NP_499734.1 ProteinModelPortal:O45577 SMR:O45577
DIP:DIP-27144N IntAct:O45577 MINT:MINT-1049050 STRING:O45577
PaxDb:O45577 EnsemblMetazoa:F56A8.6.1 EnsemblMetazoa:F56A8.6.2
GeneID:176742 KEGG:cel:CELE_F56A8.6 UCSC:F56A8.6.1 CTD:176742
WormBase:F56A8.6 HOGENOM:HOG000214372 InParanoid:O45577 OMA:VENPYGE
NextBio:893824 Uniprot:O45577
Length = 336
Score = 130 (50.8 bits), Expect = 5.9e-08, P = 5.9e-08
Identities = 29/80 (36%), Positives = 46/80 (57%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAED 60
R R+++VGN+ D+ E + +F K G +L I++ + +P Y F+EF + + AE
Sbjct: 15 RSQRSVFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEV 74
Query: 61 AIRGRDGYNFDGCRLRVELA 80
AIR +GY G LRV+ A
Sbjct: 75 AIRNLNGYELSGRILRVDSA 94
>FB|FBgn0011305 [details] [associations]
symbol:Rsf1 "Repressor splicing factor 1" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;TAS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=TAS]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:AE014134 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0048025 CTD:51773 EMBL:L34935 EMBL:L23835
RefSeq:NP_477001.2 UniGene:Dm.4180 ProteinModelPortal:Q24491
SMR:Q24491 IntAct:Q24491 MINT:MINT-277287 STRING:Q24491
PaxDb:Q24491 PRIDE:Q24491 GeneID:34370 KEGG:dme:Dmel_CG5655
FlyBase:FBgn0011305 eggNOG:NOG255799 InParanoid:Q24491
OrthoDB:EOG4QJQ4W GenomeRNAi:34370 NextBio:788156 Bgee:Q24491
GermOnline:CG5655 Uniprot:Q24491
Length = 197
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL +++ ++E F KYG++ + + PP + FVEFE+ DAE A +G
Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAF--NPPGFAFVEFEHRDDAEKACDILNGS 66
Query: 69 NFDGCRLRVELA 80
G +LRVE++
Sbjct: 67 ELLGSQLRVEIS 78
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 32/73 (43%), Positives = 42/73 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK R + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK---RG--FGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAH 81
C RV + H
Sbjct: 61 EL--CSERVTIEH 71
>FB|FBgn0038345 [details] [associations]
symbol:CG5213 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GeneTree:ENSGT00560000077064 EMBL:AY089405 RefSeq:NP_650473.1
UniGene:Dm.5039 SMR:Q9VF55 STRING:Q9VF55 EnsemblMetazoa:FBtr0083148
GeneID:41892 KEGG:dme:Dmel_CG5213 UCSC:CG5213-RA
FlyBase:FBgn0038345 eggNOG:NOG294033 InParanoid:Q9VF55 OMA:RRERTND
OrthoDB:EOG4DNCM8 GenomeRNAi:41892 NextBio:826136 Uniprot:Q9VF55
Length = 251
Score = 126 (49.4 bits), Expect = 7.9e-08, P = 7.9e-08
Identities = 30/70 (42%), Positives = 41/70 (58%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAI 62
S ++YVGNLP+ + E +V +LF YG I+D+ L K R F++FE RDAE A
Sbjct: 126 SSSLYVGNLPTYMDEKKVRELFATYGNIVDVNLLRHKFNNRSRGVAFLQFELVRDAEVAK 185
Query: 63 RGRDGYNFDG 72
G D Y +G
Sbjct: 186 YGMDRYMIEG 195
Score = 112 (44.5 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 28/80 (35%), Positives = 40/80 (50%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPP---CYCFVEFENARDAED 60
R + + LP D+ E E+ LF K+G I ++ R CY FV++ + R A
Sbjct: 38 RMKTNLILNYLPQDMTESELHRLFSKFGEIRKAKIIRHRRTGISCCYGFVDYVSERQAAA 97
Query: 61 AIRGRDGYNFDGCRLRVELA 80
A+ G DGY G RL+V A
Sbjct: 98 AVNGMDGYETRGKRLKVAFA 117
>TAIR|locus:2173088 [details] [associations]
symbol:RS41 "arginine/serine-rich splicing factor 41"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS;RCA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=RCA] [GO:0005681 "spliceosomal complex" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 GO:GO:0000398 KO:K12893 IPI:IPI00527125
RefSeq:NP_200017.2 UniGene:At.22278 ProteinModelPortal:F4KES0
SMR:F4KES0 PRIDE:F4KES0 EnsemblPlants:AT5G52040.2 GeneID:835279
KEGG:ath:AT5G52040 OMA:PYEKRRE Uniprot:F4KES0
Length = 357
Score = 129 (50.5 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
+ ++ GN D RE ++E LF KYG++ +++K + FV E+ RDAEDAIR D
Sbjct: 2 KPVFCGNFEYDARESDLERLFRKYGKVERVDMKAG-----FAFVYMEDERDAEDAIRALD 56
Query: 67 GYNFD--GCRLRVE 78
+ + G RLRVE
Sbjct: 57 RFEYGRTGRRLRVE 70
>UNIPROTKB|F1M8R2 [details] [associations]
symbol:F1M8R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00343
SMART:SM00360 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00564263 Ensembl:ENSRNOT00000047994
Uniprot:F1M8R2
Length = 212
Score = 122 (48.0 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 31/71 (43%), Positives = 42/71 (59%)
Query: 10 YVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69
YVGNL + + + E+E F YG + + I PP + FV FE+ RDAEDA+ G G
Sbjct: 9 YVGNLGTGVGKGELERAFSYYGPLRTVW--IARNPPGFAFV-FEDPRDAEDAVGGLGGKV 65
Query: 70 FDGCRLRVELA 80
G R+RVEL+
Sbjct: 66 ICGSRVRVELS 76
>ZFIN|ZDB-GENE-050417-329 [details] [associations]
symbol:zgc:112425 "zgc:112425" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050417-329 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG107480 KO:K13195
HOGENOM:HOG000276232 OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309
OMA:GNNSGGY EMBL:CABZ01088879 EMBL:CABZ01088880 EMBL:BC093299
EMBL:BC095030 IPI:IPI00570286 RefSeq:NP_001017797.1
UniGene:Dr.75965 SMR:Q566W6 STRING:Q566W6
Ensembl:ENSDART00000093068 Ensembl:ENSDART00000113350 GeneID:550495
KEGG:dre:550495 NextBio:20879737 Uniprot:Q566W6
Length = 185
Score = 121 (47.7 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 28/75 (37%), Positives = 43/75 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L D E +ED F KYG I ++ + + R + FV FEN DA+DA+ G
Sbjct: 7 LFIGGLSFDTTEQSLEDAFSKYGVITNVHVARNRETNRSRGFGFVTFENPDDAKDALEGM 66
Query: 66 DGYNFDGCRLRVELA 80
+G + DG +RV+ A
Sbjct: 67 NGKSVDGRTIRVDEA 81
>UNIPROTKB|Q9PTX2 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8400 "Rana catesbeiana" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS] [GO:0009409
"response to cold" evidence=ISS] [GO:0009790 "embryo development"
evidence=ISS] [GO:0016477 "cell migration" evidence=ISS]
[GO:0019899 "enzyme binding" evidence=ISS] [GO:0022008
"neurogenesis" evidence=ISS] [GO:0042750 "hibernation"
evidence=IEP] [GO:0045727 "positive regulation of translation"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0048793 "pronephros development" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] [GO:0005840 "ribosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0019899 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 HSSP:P09651 EMBL:AB025351 ProteinModelPortal:Q9PTX2
SMR:Q9PTX2 GO:GO:0042750 Uniprot:Q9PTX2
Length = 164
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 28/75 (37%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+ G
Sbjct: 8 LFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDAKDAMAGM 67
Query: 66 DGYNFDGCRLRVELA 80
+G DG ++RV+ A
Sbjct: 68 NGKTVDGRQIRVDQA 82
>CGD|CAL0003843 [details] [associations]
symbol:NPL3 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0032968
"positive regulation of transcription elongation from RNA
polymerase II promoter" evidence=IEA] [GO:0006415 "translational
termination" evidence=IEA] [GO:2000805 "negative regulation of
termination of RNA polymerase II transcription, poly(A)-coupled"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0031370 "eukaryotic initiation factor 4G binding" evidence=IEA]
[GO:0000993 "RNA polymerase II core binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 90 (36.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
++ ++V L +D+ EV+D F + ++++ L Y FV FEN DA+ A+
Sbjct: 8 TKQLFVRPLRNDVTREEVQDHFSRAAPVVEVRLM-----EGYAFVTFENEDDAKQALELL 62
Query: 66 DGYNFDGCRLRVELA 80
+ F+G +L++E A
Sbjct: 63 NDAEFNGEKLQIEFA 77
Score = 83 (34.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 124 EYRVIVRGLPSSASWQDLKDHMRKAGDV--CFAEV--SRDSEGTYGVVDYTNPEDMKYAI 179
+YR+++ L +WQD+KD +R+ D + +V + D+ T + + + ED+ AI
Sbjct: 87 KYRLLITNLAEGTAWQDIKDFVREKTDSQPSYVKVFTNFDNGETTCSMQFQSREDLDRAI 146
Query: 180 RKLDDTEFRN 189
LD FR+
Sbjct: 147 PLLDKAVFRD 156
>UNIPROTKB|Q59ZV3 [details] [associations]
symbol:NPL3 "Putative uncharacterized protein NPL3"
species:237561 "Candida albicans SC5314" [GO:0005634 "nucleus"
evidence=IDA] [GO:0006406 "mRNA export from nucleus" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0003843 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006406 eggNOG:COG0724
EMBL:AACQ01000092 RefSeq:XP_715038.1 ProteinModelPortal:Q59ZV3
STRING:Q59ZV3 GeneID:3643310 KEGG:cal:CaO19.7238 Uniprot:Q59ZV3
Length = 286
Score = 90 (36.7 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
++ ++V L +D+ EV+D F + ++++ L Y FV FEN DA+ A+
Sbjct: 8 TKQLFVRPLRNDVTREEVQDHFSRAAPVVEVRLM-----EGYAFVTFENEDDAKQALELL 62
Query: 66 DGYNFDGCRLRVELA 80
+ F+G +L++E A
Sbjct: 63 NDAEFNGEKLQIEFA 77
Score = 83 (34.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 21/70 (30%), Positives = 38/70 (54%)
Query: 124 EYRVIVRGLPSSASWQDLKDHMRKAGDV--CFAEV--SRDSEGTYGVVDYTNPEDMKYAI 179
+YR+++ L +WQD+KD +R+ D + +V + D+ T + + + ED+ AI
Sbjct: 87 KYRLLITNLAEGTAWQDIKDFVREKTDSQPSYVKVFTNFDNGETTCSMQFQSREDLDRAI 146
Query: 180 RKLDDTEFRN 189
LD FR+
Sbjct: 147 PLLDKAVFRD 156
>UNIPROTKB|K7EJV5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588411 Uniprot:K7EJV5
Length = 105
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|K7EMY9 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000586548 Uniprot:K7EMY9
Length = 159
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L1A3 [details] [associations]
symbol:LOC100859076 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883 EMBL:AADN02074654
Ensembl:ENSGALT00000029963 OMA:EAYNEQY Uniprot:H9L1A3
Length = 306
Score = 112 (44.5 bits), Expect = 6.9e-05, P = 6.9e-05
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNLELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELA 80
D F G R+RV+L+
Sbjct: 132 DNTEFQGKRMRVQLS 146
Score = 108 (43.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 25/70 (35%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR +
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHH 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVCINVE 68
Score = 57 (25.1 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 140 DLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197
+L+ + G V ++ +D Y V ED AIR LD+TEF+ R +++
Sbjct: 93 ELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQGKRMRVQLS 146
>WB|WBGene00011155 [details] [associations]
symbol:R09B3.2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24067 RefSeq:NP_493022.1 ProteinModelPortal:O45712
SMR:O45712 DIP:DIP-25840N MINT:MINT-1057569 STRING:O45712
PaxDb:O45712 EnsemblMetazoa:R09B3.2 GeneID:173070
KEGG:cel:CELE_R09B3.2 UCSC:R09B3.2 CTD:173070 WormBase:R09B3.2
InParanoid:O45712 OMA:NINEARP NextBio:878155 Uniprot:O45712
Length = 83
Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 30/84 (35%), Positives = 45/84 (53%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARD 57
MSG FS +YVGN P E E+ + F G+I ++ + + RP + F+EF
Sbjct: 1 MSGIFS--VYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGS 58
Query: 58 AEDAIRGRDGYNFDGCRLRVELAH 81
A+ A+ +G F+G LRV LA+
Sbjct: 59 AQRAVEQMNGAEFNGRPLRVNLAN 82
>ZFIN|ZDB-GENE-050522-496 [details] [associations]
symbol:rbm14a "RNA binding motif protein 14a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-050522-496 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
GeneTree:ENSGT00390000020883 EMBL:BX511175 EMBL:BC095368
EMBL:BC157376 IPI:IPI00487638 RefSeq:NP_001108616.1
UniGene:Dr.77963 STRING:Q503D7 Ensembl:ENSDART00000009234
Ensembl:ENSDART00000122073 GeneID:323721 KEGG:dre:323721 CTD:323721
HOGENOM:HOG000063724 HOVERGEN:HBG062132 InParanoid:Q503D7
OMA:HMERKEE OrthoDB:EOG4Q2DFQ NextBio:20808405 Uniprot:Q503D7
Length = 471
Score = 125 (49.1 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 31/78 (39%), Positives = 43/78 (55%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPC---YCFVEFENARDAEDAI 62
S ++VGNL + ++ DLF YG++LD + K+ +P Y FV E+ DAE AI
Sbjct: 82 STKVFVGNLCASCSVEDLYDLFSPYGKVLDCD-KVKTKPSSLTGYAFVYMEHKEDAEQAI 140
Query: 63 RGRDGYNFDGCRLRVELA 80
G G F G L VEL+
Sbjct: 141 EGLHGTTFMGRPLAVELS 158
>UNIPROTKB|K7ENX8 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000589266 Uniprot:K7ENX8
Length = 89
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/73 (35%), Positives = 43/73 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVE 78
+G + DG ++RV+
Sbjct: 68 NGKSVDGRQIRVD 80
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|K7EPM4 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585913 Ensembl:ENST00000586636
Ensembl:ENST00000586773 Ensembl:ENST00000589235
Ensembl:ENST00000589686 Ensembl:ENST00000591935 Uniprot:K7EPM4
Length = 168
Score = 117 (46.2 bits), Expect = 6.4e-07, P = 6.4e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>POMBASE|SPBC29A3.07c [details] [associations]
symbol:sab14 "U2 snRNP-associated protein SF3B14
ortholog (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000384 "first spliceosomal transesterification activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISM] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC29A3.07c GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0005686 eggNOG:COG0724 GO:GO:0045292 HOGENOM:HOG000276232
PIR:T40078 HSSP:Q9Y3B4 ProteinModelPortal:O59670 IntAct:O59670
STRING:O59670 OrthoDB:EOG4HB1W3 NextBio:20801589 GO:GO:0000384
Uniprot:O59670
Length = 115
Score = 91 (37.1 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 22/62 (35%), Positives = 31/62 (50%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++ NL I E+ DLF +YG + I L + FV +EN +DA A GY
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRACEKLSGY 73
Query: 69 NF 70
NF
Sbjct: 74 NF 75
Score = 35 (17.4 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 8/13 (61%), Positives = 8/13 (61%)
Query: 164 YGVVDYTNPEDMK 176
Y VV Y NPE K
Sbjct: 79 YLVVHYYNPERAK 91
>UNIPROTKB|E2R6G2 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:E2R6G2 Ensembl:ENSCAFT00000031013 Uniprot:E2R6G2
Length = 172
Score = 117 (46.2 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q14011 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISS;IDA] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0070181 "SSU rRNA binding" evidence=IDA]
[GO:0030371 "translation repressor activity" evidence=ISS]
[GO:0034063 "stress granule assembly" evidence=ISS] [GO:0009411
"response to UV" evidence=IDA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=IDA] [GO:0009409 "response to cold"
evidence=TAS] [GO:0017148 "negative regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:D78134 EMBL:AF021336
EMBL:AC004258 EMBL:BC000403 EMBL:BC000901 IPI:IPI00641579
RefSeq:NP_001271.1 UniGene:Hs.618145 UniGene:Hs.634522 PDB:1X5S
PDBsum:1X5S ProteinModelPortal:Q14011 SMR:Q14011 IntAct:Q14011
MINT:MINT-5004534 STRING:Q14011 PhosphoSite:Q14011 DMDM:5921786
REPRODUCTION-2DPAGE:IPI00180954 PaxDb:Q14011 PRIDE:Q14011
DNASU:1153 Ensembl:ENST00000320936 GeneID:1153 KEGG:hsa:1153
UCSC:uc002lrr.4 GeneCards:GC19P001269 HGNC:HGNC:1982 MIM:602649
neXtProt:NX_Q14011 PharmGKB:PA26519 HOGENOM:HOG000276232
InParanoid:Q14011 OMA:ENRSRGY OrthoDB:EOG4HHP40 PhylomeDB:Q14011
ChiTaRS:CIRBP EvolutionaryTrace:Q14011 GenomeRNAi:1153 NextBio:4788
ArrayExpress:Q14011 Bgee:Q14011 CleanEx:HS_CIRBP
Genevestigator:Q14011 GermOnline:ENSG00000099622 Uniprot:Q14011
Length = 172
Score = 117 (46.2 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|F1S6R1 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 GO:GO:0070181 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:CU929580
Ensembl:ENSSSCT00000014671 Uniprot:F1S6R1
Length = 172
Score = 117 (46.2 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q5RF83 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 EMBL:CR857278
RefSeq:NP_001124692.1 UniGene:Pab.19491 ProteinModelPortal:Q5RF83
SMR:Q5RF83 PRIDE:Q5RF83 GeneID:100171539 KEGG:pon:100171539
Uniprot:Q5RF83
Length = 172
Score = 117 (46.2 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|K7ER40 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000591659 Uniprot:K7ER40
Length = 174
Score = 117 (46.2 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|P60826 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:10029 "Cricetulus griseus" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0009411 "response to UV"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0017148 "negative regulation of translation"
evidence=ISS] [GO:0030371 "translation repressor activity"
evidence=ISS] [GO:0034063 "stress granule assembly" evidence=ISS]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0070181 "SSU
rRNA binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0006950 GO:GO:0000166
GO:GO:0030371 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 HOVERGEN:HBG107480
GO:GO:0070181 EMBL:AY359860 RefSeq:NP_001231002.1
ProteinModelPortal:P60826 SMR:P60826 PRIDE:P60826 GeneID:100689075
CTD:1153 Uniprot:P60826
Length = 172
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>MGI|MGI:893588 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0006950 "response to
stress" evidence=IEA] [GO:0009411 "response to UV" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017148
"negative regulation of translation" evidence=IDA] [GO:0030371
"translation repressor activity" evidence=IDA] [GO:0034063 "stress
granule assembly" evidence=IDA] [GO:0045727 "positive regulation of
translation" evidence=ISO] [GO:0048255 "mRNA stabilization"
evidence=ISO] [GO:0070181 "SSU rRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:893588 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0000166 GO:GO:0030371 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724 HOVERGEN:HBG107480
GO:GO:0070181 KO:K13195 CTD:1153 HOGENOM:HOG000276232 OMA:ENRSRGY
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:D78135 EMBL:AK014655
EMBL:AK132584 EMBL:BC075699 IPI:IPI00121073 RefSeq:NP_031731.1
UniGene:Mm.17898 ProteinModelPortal:P60824 SMR:P60824 STRING:P60824
PhosphoSite:P60824 PaxDb:P60824 PRIDE:P60824
Ensembl:ENSMUST00000105365 GeneID:12696 KEGG:mmu:12696
UCSC:uc007gce.1 GeneTree:ENSGT00700000104309 InParanoid:P60824
NextBio:281950 Bgee:P60824 CleanEx:MM_CIRBP Genevestigator:P60824
GermOnline:ENSMUSG00000045193 Uniprot:P60824
Length = 172
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>RGD|620756 [details] [associations]
symbol:Cirbp "cold inducible RNA binding protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO;ISS] [GO:0005634
"nucleus" evidence=ISO;ISS] [GO:0005654 "nucleoplasm" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO;ISS] [GO:0009409 "response to
cold" evidence=IEP] [GO:0009411 "response to UV" evidence=ISO;ISS]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO;ISS]
[GO:0017148 "negative regulation of translation" evidence=ISO]
[GO:0030371 "translation repressor activity" evidence=ISO;ISS]
[GO:0034063 "stress granule assembly" evidence=ISO;ISS] [GO:0045727
"positive regulation of translation" evidence=ISO;ISS] [GO:0048255
"mRNA stabilization" evidence=ISO;ISS] [GO:0070181 "SSU rRNA
binding" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:620756 GO:GO:0005634
GO:GO:0009411 GO:GO:0005654 GO:GO:0000166 GO:GO:0030371
GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0045727 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
HOVERGEN:HBG107480 GO:GO:0070181 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 GeneTree:ENSGT00700000104309 EMBL:AB000362
IPI:IPI00201031 UniGene:Rn.28931 ProteinModelPortal:P60825
SMR:P60825 IntAct:P60825 STRING:P60825 PRIDE:P60825
Ensembl:ENSRNOT00000021648 UCSC:RGD:620756 InParanoid:P60825
Genevestigator:P60825 GermOnline:ENSRNOG00000015999 Uniprot:P60825
Length = 172
Score = 116 (45.9 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 90 (36.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 24/83 (28%), Positives = 41/83 (49%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARD 57
M+ R S ++V L + + + LF +G+I + L RP + F+ F++ D
Sbjct: 1 MAKRISAQLFVSRLSAYTTDQSLRQLFSPFGQIKEARLIRDSETQRPKGFGFITFDSEDD 60
Query: 58 AEDAIRGRDGYNFDGCRLRVELA 80
A A++ DG DG + VE+A
Sbjct: 61 ARKALKSLDGKIVDGRLIFVEVA 83
Score = 34 (17.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 7/26 (26%), Positives = 14/26 (53%)
Query: 149 GDVCFAEVSRDSEGTYGVVDYTNPED 174
G + F EV++++E ++ ED
Sbjct: 75 GRLIFVEVAKNAEEVRAGINSNKAED 100
>UNIPROTKB|F6XHA7 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13195 CTD:1153
OMA:ENRSRGY GeneTree:ENSGT00700000104309 Ensembl:ENSCAFT00000031013
EMBL:AAEX03012655 RefSeq:XP_868600.1 GeneID:476755 KEGG:cfa:476755
Uniprot:F6XHA7
Length = 185
Score = 117 (46.2 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>FB|FBgn0260010 [details] [associations]
symbol:rump "rumpelstiltskin" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;IDA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008298
"intracellular mRNA localization" evidence=IMP] [GO:0008595
"anterior/posterior axis specification, embryo" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0035282 "segmentation"
evidence=IGI] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0007277 "pole cell development" evidence=IGI] [GO:0009952
"anterior/posterior pattern specification" evidence=IGI]
[GO:0045451 "pole plasm oskar mRNA localization" evidence=IGI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0005634 GO:GO:0005737
GO:GO:0007067 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003730
GO:GO:0030529 GO:GO:0045451 GO:GO:0007277
GeneTree:ENSGT00410000025635 FlyBase:FBgn0260010 ChiTaRS:rump
RefSeq:NP_649899.1 ProteinModelPortal:Q9VHC7 SMR:Q9VHC7
IntAct:Q9VHC7 MINT:MINT-319320 STRING:Q9VHC7 PRIDE:Q9VHC7
EnsemblMetazoa:FBtr0082123 GeneID:41138 KEGG:dme:Dmel_CG9373
UCSC:CG9373-RA CTD:41138 OMA:DYRWQDL PhylomeDB:Q9VHC7
GenomeRNAi:41138 NextBio:822366 ArrayExpress:Q9VHC7 Bgee:Q9VHC7
Uniprot:Q9VHC7
Length = 632
Score = 98 (39.6 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183
+I++ +P + +WQ L+D R+ GDV FAE+ R ++ GVV + D + AI +D
Sbjct: 565 IIIKNVPITCTWQTLRDKFREIGDVKFAEI-RGND--VGVVRFFKERDAELAIALMD 618
Score = 73 (30.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 21/76 (27%), Positives = 38/76 (50%)
Query: 9 IYVGNLPSDIREYEVEDLFYKY-GRILDIELKIPPRPPCY-C-FVEFENARDAEDAIRGR 65
+Y+ N+P D R +++DLF + G I ++L C VEF++ + + A+
Sbjct: 59 VYISNIPYDYRWQDLKDLFRRIVGSIEYVQLFFDESGKARGCGIVEFKDPENVQKALEKM 118
Query: 66 DGYNFDGCRLRVELAH 81
+ Y +G L V+ H
Sbjct: 119 NRYEVNGRELVVKEDH 134
Score = 54 (24.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/81 (19%), Positives = 36/81 (44%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPC--YCFVEFENARDA 58
+SG ++V NL + +++ +F G++ ++L + + +E+++ +A
Sbjct: 226 ISGPLHNKVFVANLDYKVDNKKLKQVFKLAGKVQSVDLSLDKEGNSRGFAVIEYDHPVEA 285
Query: 59 EDAIRGRDGYNFDGCRLRVEL 79
AI D R+ V L
Sbjct: 286 VQAISMLDRQMLFDRRMTVRL 306
>UNIPROTKB|G4NC92 [details] [associations]
symbol:MGG_01109 "Nuclear cap-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CM001235
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:XP_003717825.1
ProteinModelPortal:G4NC92 EnsemblFungi:MGG_01109T0 GeneID:2674842
KEGG:mgr:MGG_01109 Uniprot:G4NC92
Length = 155
Score = 111 (44.1 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPC------YCFVEFENA 55
+ R+ T+YVG LP+ E + D F +G I D+++ P + +VE+E+A
Sbjct: 4 ASRWKATLYVGGLPAAATEASLHDAFIPFGEIADVKMPKNDNPKSAETHRGFAYVEYEDA 63
Query: 56 RDAEDAIRGRDGYNFDGCRLRVELA 80
DA++A+ D F G ++V A
Sbjct: 64 DDAKEAMDNMDQSEFFGRIIKVHAA 88
>WB|WBGene00013293 [details] [associations]
symbol:Y57G11A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z99279
RefSeq:NP_502757.2 ProteinModelPortal:O18219 SMR:O18219
EnsemblMetazoa:Y57G11A.5 GeneID:190364 KEGG:cel:CELE_Y57G11A.5
UCSC:Y57G11A.5 CTD:190364 WormBase:Y57G11A.5 eggNOG:NOG301947
HOGENOM:HOG000020379 InParanoid:O18219 OMA:KKICDLE Uniprot:O18219
Length = 110
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/74 (35%), Positives = 39/74 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+R +YVGN+P D E E+E +F G I I + RPP + FV F+ A DA++
Sbjct: 16 NRQVYVGNMPFDATEKEIEAVFSVMGPIKSIWMA--KRPPGFAFVTFKRTVHAFDAVKYL 73
Query: 66 DGYNFDGCRLRVEL 79
+G +VE+
Sbjct: 74 NGKKICDLEAKVEM 87
>UNIPROTKB|K7EQR7 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000585914 Uniprot:K7EQR7
Length = 202
Score = 117 (46.2 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q3SZN4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070181 "SSU rRNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IEA] [GO:0045727 "positive regulation
of translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009411 GO:GO:0000166 GO:GO:0030371 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0010494
GO:GO:0034063 eggNOG:COG0724 GO:GO:0070181 KO:K13195 CTD:1153
HOGENOM:HOG000276232 OMA:ENRSRGY OrthoDB:EOG4HHP40
GeneTree:ENSGT00700000104309 EMBL:DAAA02020258 EMBL:BC102773
IPI:IPI00702406 RefSeq:NP_001029450.1 UniGene:Bt.23273 SMR:Q3SZN4
Ensembl:ENSBTAT00000004477 GeneID:507120 KEGG:bta:507120
InParanoid:Q3SZN4 NextBio:20867909 Uniprot:Q3SZN4
Length = 213
Score = 117 (46.2 bits), Expect = 3.8e-06, P = 3.8e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|H9L0U4 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000029134 Uniprot:H9L0U4
Length = 167
Score = 113 (44.8 bits), Expect = 4.0e-06, P = 4.0e-06
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+ VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|B5G279 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:59729 "Taeniopygia guttata" [GO:0000340 "RNA
7-methylguanosine cap binding" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000184 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047
GO:GO:0000340 GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370
GO:GO:0045292 HOGENOM:HOG000217589 OrthoDB:EOG470TJG
PANTHER:PTHR18847 KO:K12883 EMBL:DQ215986 RefSeq:NP_001232044.1
UniGene:Tgu.10927 ProteinModelPortal:B5G279 STRING:B5G279
GeneID:100190722 KEGG:tgu:100190722 Uniprot:B5G279
Length = 168
Score = 113 (44.8 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPC-YCFVEFENARDAED 60
+ S T+YVGNL E ++++LF K G + I + + + PC +CFVE+ DAE
Sbjct: 40 KISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEH 99
Query: 61 AIRGRDGYNFDGCRLRVE 78
A+R +G D +R +
Sbjct: 100 AMRFINGTRLDDRIIRTD 117
>UNIPROTKB|H9L3B3 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000036191 Uniprot:H9L3B3
Length = 172
Score = 113 (44.8 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+ VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q28IQ9 [details] [associations]
symbol:cirbp "Cold-inducible RNA-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0007369 "gastrulation" evidence=ISS]
[GO:0009409 "response to cold" evidence=ISS] [GO:0009790 "embryo
development" evidence=ISS] [GO:0016477 "cell migration"
evidence=ISS] [GO:0019899 "enzyme binding" evidence=ISS]
[GO:0022008 "neurogenesis" evidence=ISS] [GO:0045727 "positive
regulation of translation" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0048793 "pronephros development"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0005840 "ribosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0005654 GO:GO:0016477
GO:GO:0022008 GO:GO:0000166 GO:GO:0009409 Gene3D:3.30.70.330
GO:GO:0019899 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 eggNOG:COG0724 GO:GO:0048793 HOVERGEN:HBG107480
GO:GO:0060212 KO:K13195 CTD:1153 HOGENOM:HOG000276232 EMBL:CR760272
RefSeq:NP_001017228.1 UniGene:Str.47654 ProteinModelPortal:Q28IQ9
SMR:Q28IQ9 STRING:Q28IQ9 GeneID:549982 KEGG:xtr:549982
Xenbase:XB-GENE-492781 Uniprot:Q28IQ9
Length = 166
Score = 112 (44.5 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 25/75 (33%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L + E +E +F KYG++ ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLNFETTEESLEQVFSKYGQVAEVVVVKDRESKRSRGFGFVTFENPEDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q5ZKR5 [details] [associations]
symbol:NCBP2 "Nuclear cap-binding protein subunit 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005846 "nuclear cap binding complex"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0006370
"7-methylguanosine mRNA capping" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0000340 "RNA 7-methylguanosine cap
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR027157 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0031047 GO:GO:0000340
GO:GO:0051028 eggNOG:COG0724 GO:GO:0006370 GO:GO:0045292
HOGENOM:HOG000217589 OrthoDB:EOG470TJG PANTHER:PTHR18847
HSSP:P52298 KO:K12883 CTD:22916 GeneTree:ENSGT00390000003197
OMA:YRTDYDV EMBL:AJ720019 IPI:IPI00603887 RefSeq:NP_001006430.1
UniGene:Gga.6356 ProteinModelPortal:Q5ZKR5 SMR:Q5ZKR5
Ensembl:ENSGALT00000009239 GeneID:422214 KEGG:gga:422214
InParanoid:Q5ZKR5 NextBio:20824880 Uniprot:Q5ZKR5
Length = 168
Score = 112 (44.5 bits), Expect = 7.2e-06, P = 7.2e-06
Identities = 27/78 (34%), Positives = 43/78 (55%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPC-YCFVEFENARDAED 60
+ S T+YVGNL E ++++LF K G + I + + + PC +CFVE+ DAE
Sbjct: 40 KISSTLYVGNLSFYTTEEQIQELFSKCGDVKRIVMGLDKIKKTPCGFCFVEYYTRADAEH 99
Query: 61 AIRGRDGYNFDGCRLRVE 78
A+R +G D +R +
Sbjct: 100 AMRFINGTRLDDRIVRTD 117
>ASPGD|ASPL0000011897 [details] [associations]
symbol:AN3739 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001302
ProteinModelPortal:C8V7B0 EnsemblFungi:CADANIAT00004984
HOGENOM:HOG000217892 OMA:ERAEIQY Uniprot:C8V7B0
Length = 484
Score = 95 (38.5 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 126 RVIVRGLPSSASWQDLKDHMRKA---GDVCFAEVSRDSEGT---YGVVDYTNPEDMKYAI 179
++ V LP + WQDLKD R+A G V A+V D+ G G+V + +P+D + AI
Sbjct: 223 QLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDDARNAI 282
Query: 180 RKLDDTEFR 188
++ + +++
Sbjct: 283 QQFNGYDWQ 291
Score = 94 (38.1 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 26/80 (32%), Positives = 42/80 (52%)
Query: 3 GRFSRTIYVGNLPSDIREYEVEDLFYK---YGRIL--DIELKIPPRPPCYCFVEFENARD 57
G R +YV NLP ++ +++DLF + G ++ D+ RP V FE+ D
Sbjct: 218 GGGGRQLYVSNLPFNVGWQDLKDLFRQAAQQGTVIRADVHTDASGRPKGSGIVAFESPDD 277
Query: 58 AEDAIRGRDGYNFDGCRLRV 77
A +AI+ +GY++ G L V
Sbjct: 278 ARNAIQQFNGYDWQGRTLEV 297
Score = 69 (29.3 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
Identities = 17/70 (24%), Positives = 34/70 (48%)
Query: 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-C-FVEFENARDAE 59
S + R +YVGNL D++ + ++D + G ++ ++ + P C VE+ A+
Sbjct: 106 SSQQDRRVYVGNLSYDVKWHHLKDFMRQAGDVIFADVLLLPNGMSKGCGIVEYATREQAQ 165
Query: 60 DAIRGRDGYN 69
+A+ N
Sbjct: 166 NAVNTLSNQN 175
Score = 61 (26.5 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD----SEGTYGVVDYTNPEDMKYAIRKL 182
+ VR LP S DL D G V AE+ + S GT GVV + N + + +I K
Sbjct: 383 IYVRNLPWSTCNDDLVDLFSTIGKVERAEIQYEPNGRSRGT-GVVQFDNADTAETSIAKF 441
Query: 183 DDTEF 187
++
Sbjct: 442 TGYQY 446
>UNIPROTKB|B4E2X2 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC004221 HOVERGEN:HBG107480 EMBL:AC004258 UniGene:Hs.618145
UniGene:Hs.634522 HGNC:HGNC:1982 HOGENOM:HOG000276232
OrthoDB:EOG4HHP40 ChiTaRS:CIRBP EMBL:AK304470 IPI:IPI00909097
SMR:B4E2X2 STRING:B4E2X2 Ensembl:ENST00000413636 UCSC:uc010xgl.1
Uniprot:B4E2X2
Length = 263
Score = 117 (46.2 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 97 (39.2 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDA 58
M +T+YVGNL D+ E + LF + G + ++ + P YCFVEF R A
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHA 59
Query: 59 EDAIRGRDGYNFDGCRLRVELA 80
A+ +G G ++V A
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA 81
Score = 54 (24.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKYAI 179
+ V V L + +D+K G + A V +D S+G YG V + N D + AI
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG-YGFVSFFNKWDAENAI 164
Query: 180 RK-----LDDTEFRNPWA 192
++ L + R WA
Sbjct: 165 QQMGGQWLGGRQIRTNWA 182
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+R +YV NLP +I E+ D+F KYG I I + FV +E+ DA++A+
Sbjct: 18 NRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIYDAKNAVDHL 77
Query: 66 DGYN 69
G+N
Sbjct: 78 SGFN 81
>UNIPROTKB|Q9DED4 [details] [associations]
symbol:cirbp-b "Cold-inducible RNA-binding protein B"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007369
"gastrulation" evidence=IMP] [GO:0009409 "response to cold"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0016477 "cell migration" evidence=IMP] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=IGI;IMP] [GO:0048793
"pronephros development" evidence=ISS] [GO:0060212 "negative
regulation of nuclear-transcribed mRNA poly(A) tail shortening"
evidence=IMP] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0005654
GO:GO:0016477 GO:GO:0022008 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0045727
GO:GO:0007369 GO:GO:0048793 HOVERGEN:HBG107480 GO:GO:0060212
EMBL:AB044535 EMBL:BC054250 RefSeq:NP_001079794.1 UniGene:Xl.8151
HSSP:P09651 ProteinModelPortal:Q9DED4 SMR:Q9DED4 MINT:MINT-274223
PRIDE:Q9DED4 GeneID:379484 KEGG:xla:379484 CTD:379484
Xenbase:XB-GENE-492785 KO:K13195 Uniprot:Q9DED4
Length = 166
Score = 111 (44.1 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 7 LFIGGLNFDTNEESLEQVFSKYGQISEVVVVKDRETKRSRGFGFVTFENPDDAKDAMMAM 66
Query: 66 DGYNFDGCRLRVELA 80
+G DG ++RV+ A
Sbjct: 67 NGKAVDGRQIRVDQA 81
>TAIR|locus:2135605 [details] [associations]
symbol:AT4G12640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
InterPro:IPR012921 Pfam:PF07744 IPI:IPI00546459 RefSeq:NP_193001.2
UniGene:At.46444 ProteinModelPortal:F4JRD9 SMR:F4JRD9 PRIDE:F4JRD9
EnsemblPlants:AT4G12640.1 GeneID:826877 KEGG:ath:AT4G12640
OMA:ERNYEAG Uniprot:F4JRD9
Length = 823
Score = 118 (46.6 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 29/75 (38%), Positives = 40/75 (53%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
SR ++VGNLP I E E+ D F ++G + + + P R Y FV F + DA AI
Sbjct: 22 SRHLWVGNLPHGILERELADRFLRFGELESLAFQ-PGRS--YAFVNFNHDEDAFAAIESL 78
Query: 66 DGYNFDGCRLRVELA 80
G+ G LR+E A
Sbjct: 79 QGFPLSGNPLRIEFA 93
Score = 36 (17.7 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 173 EDMKYAIRKLDDT 185
E + A+ KLDDT
Sbjct: 548 EKQRAAVSKLDDT 560
>UNIPROTKB|D6W5Y5 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471139 EMBL:AC004221 EMBL:AC004258 IPI:IPI00641579
UniGene:Hs.618145 UniGene:Hs.634522 HGNC:HGNC:1982
HOGENOM:HOG000276232 ChiTaRS:CIRBP ProteinModelPortal:D6W5Y5
PRIDE:D6W5Y5 Ensembl:ENST00000587323 Ensembl:ENST00000587896
Ensembl:ENST00000588230 Ensembl:ENST00000589710 ArrayExpress:D6W5Y5
Bgee:D6W5Y5 Uniprot:D6W5Y5
Length = 297
Score = 117 (46.2 bits), Expect = 9.8e-06, P = 9.8e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>UNIPROTKB|H9KZV5 [details] [associations]
symbol:CIRBP "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=IEA] [GO:0009411 "response to UV"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0030371 "translation repressor activity"
evidence=IEA] [GO:0034063 "stress granule assembly" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0048255 "mRNA stabilization" evidence=IEA] [GO:0070181 "SSU
rRNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 OMA:ENRSRGY
GeneTree:ENSGT00700000104309 EMBL:AADN02030141 EMBL:AADN02030142
Ensembl:ENSGALT00000019966 Uniprot:H9KZV5
Length = 190
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+ VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LLVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 68 NGKSVDGRQIRVDQA 82
>WB|WBGene00011156 [details] [associations]
symbol:R09B3.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232
GeneTree:ENSGT00550000074641 EMBL:Z81108 HSSP:P33240 PIR:T24068
RefSeq:NP_493023.1 ProteinModelPortal:O45713 SMR:O45713
IntAct:O45713 STRING:O45713 PaxDb:O45713 EnsemblMetazoa:R09B3.3
GeneID:173071 KEGG:cel:CELE_R09B3.3 UCSC:R09B3.3 CTD:173071
WormBase:R09B3.3 InParanoid:O45713 OMA:KRVHIPT NextBio:878159
Uniprot:O45713
Length = 85
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARD 57
MSG FS +YVGN P E ++ + F + G + ++ + + RP + FVEF
Sbjct: 1 MSG-FS--VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAA 57
Query: 58 AEDAIRGRDGYNFDGCRLRVELA 80
A+ A+ +G +F+G LRV LA
Sbjct: 58 AQRAVDQFNGVDFNGRALRVNLA 80
>UNIPROTKB|O45713 [details] [associations]
symbol:R09B3.3 "Protein R09B3.3" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 EMBL:Z81108
HSSP:P33240 PIR:T24068 RefSeq:NP_493023.1 ProteinModelPortal:O45713
SMR:O45713 IntAct:O45713 STRING:O45713 PaxDb:O45713
EnsemblMetazoa:R09B3.3 GeneID:173071 KEGG:cel:CELE_R09B3.3
UCSC:R09B3.3 CTD:173071 WormBase:R09B3.3 InParanoid:O45713
OMA:KRVHIPT NextBio:878159 Uniprot:O45713
Length = 85
Score = 102 (41.0 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 29/83 (34%), Positives = 45/83 (54%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARD 57
MSG FS +YVGN P E ++ + F + G + ++ + + RP + FVEF
Sbjct: 1 MSG-FS--VYVGNAPFQTTEDDLGNYFSQAGNVSNVRIVCDRETGRPRGFAFVEFTEEAA 57
Query: 58 AEDAIRGRDGYNFDGCRLRVELA 80
A+ A+ +G +F+G LRV LA
Sbjct: 58 AQRAVDQFNGVDFNGRALRVNLA 80
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRG 64
RT+YVGNL D+ E + LF + G ++ + P YCFVEF RDA A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAA 67
Query: 65 RDGYNFDGCRLRVELA 80
+G G ++V A
Sbjct: 68 MNGRKILGKEVKVNWA 83
>UNIPROTKB|J3KP15 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000358156
Uniprot:J3KP15
Length = 134
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRG 64
++ V NL + +F KYGR+ D+ + + + FV F + RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGCRLRVELA 80
DG DG LRV++A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRG 64
++ V NL + +F KYGR+ D+ + + + FV F + RDAEDA+
Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74
Query: 65 RDGYNFDGCRLRVELA 80
DG DG LRV++A
Sbjct: 75 MDGAVLDGRELRVQMA 90
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 101 (40.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRG 64
RT+YVGNL D+ E + LF + G ++ + P YCFVEF RDA A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAA 67
Query: 65 RDGYNFDGCRLRVELA 80
+G G ++V A
Sbjct: 68 MNGRKILGKEVKVNWA 83
Score = 54 (24.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKY 177
+ + V V L + +D+K G + A V +D S+G YG V + N D +
Sbjct: 95 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKG-YGFVSFYNKLDAEN 153
Query: 178 AI-----RKLDDTEFRNPWA 192
AI + L + R WA
Sbjct: 154 AIVHMGGQWLGGRQIRTNWA 173
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 101 (40.6 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 27/76 (35%), Positives = 38/76 (50%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRG 64
RT+YVGNL D+ E + LF + G ++ + P YCFVEF RDA A+
Sbjct: 9 RTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP-YCFVEFYEHRDAAAALAA 67
Query: 65 RDGYNFDGCRLRVELA 80
+G G ++V A
Sbjct: 68 MNGRKILGKEVKVNWA 83
Score = 54 (24.1 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 22/80 (27%), Positives = 34/80 (42%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKY 177
+ + V V L + +D+K G + A V +D S+G YG V + N D +
Sbjct: 95 NHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKG-YGFVSFYNKLDAEN 153
Query: 178 AI-----RKLDDTEFRNPWA 192
AI + L + R WA
Sbjct: 154 AIVHMGGQWLGGRQIRTNWA 173
>WB|WBGene00011059 [details] [associations]
symbol:R06C1.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GeneTree:ENSGT00550000074641 HSSP:P33240
EMBL:Z81106 PIR:T23960 RefSeq:NP_493029.1 ProteinModelPortal:O62337
SMR:O62337 STRING:O62337 PaxDb:O62337 EnsemblMetazoa:R06C1.4
GeneID:173076 KEGG:cel:CELE_R06C1.4 UCSC:R06C1.4 CTD:173076
WormBase:R06C1.4 InParanoid:O62337 OMA:RVYLPVD NextBio:878179
Uniprot:O62337
Length = 84
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 24/77 (31%), Positives = 40/77 (51%)
Query: 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRG 64
++YVGN+P E E+ + F G + ++ + + RP + FVEF A+ A+
Sbjct: 7 SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66
Query: 65 RDGYNFDGCRLRVELAH 81
+G F+G LRV A+
Sbjct: 67 LNGVAFNGRNLRVNYAN 83
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 112 (44.5 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI++I L + + + FV FE+ DA+D R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
Score = 37 (18.1 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 13/46 (28%), Positives = 20/46 (43%)
Query: 133 PSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYG----VVDYTNPED 174
PS S+ +D G+ C A +R +YG DY++ D
Sbjct: 273 PSGGSY---RDSYESYGNSCSAPPTRGPPPSYGGSSRYDDYSSSRD 315
>UNIPROTKB|F1RUT1 [details] [associations]
symbol:RBM4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 GeneTree:ENSGT00390000020883
Ensembl:ENSSSCT00000014143 OMA:NTAMANH Uniprot:F1RUT1
Length = 356
Score = 116 (45.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
>UNIPROTKB|F1RUT8 [details] [associations]
symbol:RBM4B "RNA-binding protein 4B" species:9823 "Sus
scrofa" [GO:0043153 "entrainment of circadian clock by photoperiod"
evidence=IEA] [GO:0032922 "circadian regulation of gene expression"
evidence=IEA] [GO:0010628 "positive regulation of gene expression"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0006417
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0032922 GO:GO:0010628 Gene3D:4.10.60.10
GO:GO:0043153 GeneTree:ENSGT00390000020883 OMA:VYYNDAY
Ensembl:ENSSSCT00000014136 Uniprot:F1RUT8
Length = 359
Score = 116 (45.9 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 26/70 (37%), Positives = 39/70 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ I Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-IKN----YGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVE 78
G + VE
Sbjct: 59 KLHGVNINVE 68
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 97 (39.2 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDA 58
M +T+YVGNL D+ E + LF + G + ++ + P YCFVEF R A
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHA 59
Query: 59 EDAIRGRDGYNFDGCRLRVELA 80
A+ +G G ++V A
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA 81
Score = 55 (24.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKY 177
+ + V V L + +D+K G + A V +D S+G YG V + N D +
Sbjct: 93 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG-YGFVSFFNKWDAEN 151
Query: 178 AIRK-----LDDTEFRNPWA 192
AI++ L + R WA
Sbjct: 152 AIQQMGGQWLGGRQIRTNWA 171
>ZFIN|ZDB-GENE-030131-5841 [details] [associations]
symbol:cirbp "cold inducible RNA binding protein"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0009409 "response
to cold" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-5841 GO:GO:0000166 GO:GO:0009409
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104309
EMBL:BX649404 IPI:IPI00758644 PRIDE:F1R6L3
Ensembl:ENSDART00000105405 ArrayExpress:F1R6L3 Bgee:F1R6L3
Uniprot:F1R6L3
Length = 224
Score = 113 (44.8 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L D E +E+ F KYG I +++ + R + FV FEN DA+DA+
Sbjct: 25 LFIGGLSYDTTEQSLEEAFSKYGTIAKVDVIRDRETDRSRGFGFVTFENPEDAKDAMAAM 84
Query: 66 DGYNFDGCRLRVELA 80
+G DG +RV+ A
Sbjct: 85 NGKQVDGRMIRVDEA 99
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 12 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 71
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 72 NGKSLDGKAIKVEQA 86
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 115 (45.5 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 116 (45.9 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI++I L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 116 (45.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 115 (45.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|F1P336 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074656
EMBL:AADN02020638 EMBL:AADN02020639 IPI:IPI00680028
Ensembl:ENSGALT00000033265 ArrayExpress:F1P336 Uniprot:F1P336
Length = 689
Score = 94 (38.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63
R S+T+ V NL E +++LF K I + RP Y FVEF A DA++A+
Sbjct: 456 RESKTLIVNNLSYAASEETLQELFKKATSI-KMPQNNQGRPKGYAFVEFPTAEDAKEALN 514
Query: 64 GRDGYNFDGCRLRVELA 80
+ +G +R+E +
Sbjct: 515 SCNNTEIEGRAIRLEFS 531
Score = 68 (29.0 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVS-RDSEGT--YGVVDYTNPEDMKYAIRKLD 183
+ VRGL + + L++ G + V+ RD+ + +G VD+++PED K A ++
Sbjct: 553 LFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAME 610
Query: 184 DTE 186
D E
Sbjct: 611 DGE 613
>UNIPROTKB|F1NU40 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0005938 "cell cortex" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0042162 "telomeric
DNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005938
GO:GO:0005654 GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0042162
GeneTree:ENSGT00550000074656 IPI:IPI00577202 OMA:ENAMEIR
EMBL:AADN02020638 EMBL:AADN02020639 Ensembl:ENSGALT00000012486
ArrayExpress:F1NU40 Uniprot:F1NU40
Length = 691
Score = 94 (38.1 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63
R S+T+ V NL E +++LF K I + RP Y FVEF A DA++A+
Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKKATSI-KMPQNNQGRPKGYAFVEFPTAEDAKEALN 516
Query: 64 GRDGYNFDGCRLRVELA 80
+ +G +R+E +
Sbjct: 517 SCNNTEIEGRAIRLEFS 533
Score = 68 (29.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVS-RDSEGT--YGVVDYTNPEDMKYAIRKLD 183
+ VRGL + + L++ G + V+ RD+ + +G VD+++PED K A ++
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAME 612
Query: 184 DTE 186
D E
Sbjct: 613 DGE 615
>FB|FBgn0022943 [details] [associations]
symbol:Cbp20 "cap binding protein 20" species:7227
"Drosophila melanogaster" [GO:0000339 "RNA cap binding"
evidence=ISS] [GO:0005846 "nuclear cap binding complex"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=IEA]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0045071 "negative
regulation of viral genome replication" evidence=IMP] [GO:0035195
"gene silencing by miRNA" evidence=IMP] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR027157
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005875 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045071 GO:GO:0030422 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006370 GO:GO:0031053
GO:GO:0000339 PANTHER:PTHR18847 HSSP:P52298 KO:K12883
GeneTree:ENSGT00390000003197 OMA:RQDYDPA EMBL:AJ238969
EMBL:AY070578 RefSeq:NP_524396.1 UniGene:Dm.2405
ProteinModelPortal:Q9V3L6 SMR:Q9V3L6 IntAct:Q9V3L6 MINT:MINT-987792
STRING:Q9V3L6 PaxDb:Q9V3L6 PRIDE:Q9V3L6 EnsemblMetazoa:FBtr0083551
GeneID:42166 KEGG:dme:Dmel_CG12357 UCSC:CG12357-RA CTD:42166
FlyBase:FBgn0022943 InParanoid:Q9V3L6 OrthoDB:EOG4K0P4N
PhylomeDB:Q9V3L6 GenomeRNAi:42166 NextBio:827474 Bgee:Q9V3L6
Uniprot:Q9V3L6
Length = 154
Score = 106 (42.4 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 28/78 (35%), Positives = 44/78 (56%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKIPPRPPC-YCFVEFENARDAED 60
R S T+YVGNL E ++ +LF + G R++ + L + PC +CFVE+ +AE
Sbjct: 27 RDSCTLYVGNLSFYTTEEQIHELFSRCGDVRVIVMGLDKYKKTPCGFCFVEYYVRSEAEA 86
Query: 61 AIRGRDGYNFDGCRLRVE 78
A+R +G D +RV+
Sbjct: 87 AMRFVNGTRLDDRLIRVD 104
>UNIPROTKB|P15771 [details] [associations]
symbol:NCL "Nucleolin" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 Gene3D:1.25.10.10 InterPro:IPR011989 GO:GO:0000166
GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K11294 EMBL:X17199 EMBL:M21791
IPI:IPI00577202 PIR:S08414 RefSeq:NP_990596.1 UniGene:Gga.3663
ProteinModelPortal:P15771 SMR:P15771 STRING:P15771 PRIDE:P15771
GeneID:396201 KEGG:gga:396201 CTD:4691 HOGENOM:HOG000113885
InParanoid:P15771 NextBio:20816253 Uniprot:P15771
Length = 694
Score = 94 (38.1 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 25/77 (32%), Positives = 39/77 (50%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63
R S+T+ V NL E +++LF K I + RP Y FVEF A DA++A+
Sbjct: 458 RESKTLIVNNLSYAASEETLQELFKKATSI-KMPQNNQGRPKGYAFVEFPTAEDAKEALN 516
Query: 64 GRDGYNFDGCRLRVELA 80
+ +G +R+E +
Sbjct: 517 SCNNTEIEGRAIRLEFS 533
Score = 68 (29.0 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVS-RDSEGT--YGVVDYTNPEDMKYAIRKLD 183
+ VRGL + + L++ G + V+ RD+ + +G VD+++PED K A ++
Sbjct: 555 LFVRGLSEDTTEETLRESFE--GSISARIVTDRDTGSSKGFGFVDFSSPEDAKAAKEAME 612
Query: 184 DTE 186
D E
Sbjct: 613 DGE 615
>UNIPROTKB|O93235 [details] [associations]
symbol:cirbp-a "Cold-inducible RNA-binding protein A"
species:8355 "Xenopus laevis" [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISS] [GO:0007369 "gastrulation" evidence=IMP] [GO:0009409
"response to cold" evidence=IEP] [GO:0009411 "response to UV"
evidence=ISS] [GO:0009790 "embryo development" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=ISS] [GO:0016477
"cell migration" evidence=IMP] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0019899 "enzyme binding"
evidence=ISS] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030371
"translation repressor activity" evidence=ISS] [GO:0034063 "stress
granule assembly" evidence=ISS] [GO:0045727 "positive regulation of
translation" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0048793 "pronephros development"
evidence=IEP;IMP] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
[GO:0070181 "SSU rRNA binding" evidence=ISS] [GO:0072004 "kidney
field specification" evidence=IMP] [GO:0005840 "ribosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009411
GO:GO:0005654 GO:GO:0016477 GO:GO:0022008 GO:GO:0000166
GO:GO:0030371 GO:GO:0009409 Gene3D:3.30.70.330 GO:GO:0019899
GO:GO:0048255 GO:GO:0003730 GO:GO:0045727 GO:GO:0007369
GO:GO:0010494 GO:GO:0034063 GO:GO:0048793 EMBL:AB007597
EMBL:AF278702 EMBL:BC041204 RefSeq:NP_001080069.1 UniGene:Xl.4515
ProteinModelPortal:O93235 SMR:O93235 GeneID:379761 KEGG:xla:379761
CTD:379761 Xenbase:XB-GENE-6256647 HOVERGEN:HBG107480 GO:GO:0070181
GO:GO:0072004 GO:GO:0060212 Uniprot:O93235
Length = 166
Score = 108 (43.1 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 26/75 (34%), Positives = 43/75 (57%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L + E +E F KYGRI ++ + + R + FV FEN DA+DA+
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++RV+ A
Sbjct: 67 NGKSVDGRQIRVDQA 81
>GENEDB_PFALCIPARUM|MAL8P1.40 [details] [associations]
symbol:MAL8P1.40 "RNA-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0006417 "regulation of translation"
evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:2.20.70.10 SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051
RefSeq:XP_001349292.1 ProteinModelPortal:Q8IB66 IntAct:Q8IB66
MINT:MINT-1560303 EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381
KEGG:pfa:MAL8P1.40 EuPathDB:PlasmoDB:PF3D7_0823200
HOGENOM:HOG000282627 OMA:QHFQHFG ProtClustDB:CLSZ2431748
Uniprot:Q8IB66
Length = 286
Score = 78 (32.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YGVVDYTNPEDMKYAIR 180
V V LPS + +L H + G V A + RD+ G YG V + NPE AI+
Sbjct: 152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIK 208
Score = 78 (32.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPR---PPCYCFVEFENARD 57
MS S I++G++P D+ E E++ KYG I + +P P + F+ +E +
Sbjct: 1 MSLTNSSKIFIGSIPKDVTEEELKTEAAKYGTITQVYY-VPATAQSPRGWAFITYEQRSE 59
Query: 58 AEDAIRGRD 66
A AI D
Sbjct: 60 AYKAIEALD 68
>UNIPROTKB|Q8IB66 [details] [associations]
symbol:MAL8P1.40 "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006417 "regulation of translation" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00397 PROSITE:PS01159 PROSITE:PS50020
PROSITE:PS50102 SMART:SM00360 SMART:SM00456 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:2.20.70.10
SUPFAM:SSF51045 EMBL:AL844507 HSSP:Q61051 RefSeq:XP_001349292.1
ProteinModelPortal:Q8IB66 IntAct:Q8IB66 MINT:MINT-1560303
EnsemblProtists:MAL8P1.40:mRNA GeneID:2655381 KEGG:pfa:MAL8P1.40
EuPathDB:PlasmoDB:PF3D7_0823200 HOGENOM:HOG000282627 OMA:QHFQHFG
ProtClustDB:CLSZ2431748 Uniprot:Q8IB66
Length = 286
Score = 78 (32.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YGVVDYTNPEDMKYAIR 180
V V LPS + +L H + G V A + RD+ G YG V + NPE AI+
Sbjct: 152 VFVFHLPSHWTDMELYQHFQHFGYVVSARIQRDANGRNKGYGFVSFNNPESALNAIK 208
Score = 78 (32.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/69 (30%), Positives = 34/69 (49%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPR---PPCYCFVEFENARD 57
MS S I++G++P D+ E E++ KYG I + +P P + F+ +E +
Sbjct: 1 MSLTNSSKIFIGSIPKDVTEEELKTEAAKYGTITQVYY-VPATAQSPRGWAFITYEQRSE 59
Query: 58 AEDAIRGRD 66
A AI D
Sbjct: 60 AYKAIEALD 68
>ZFIN|ZDB-GENE-030131-6986 [details] [associations]
symbol:ncl "nucleolin" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-6986 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 InterPro:IPR017859 PRINTS:PR01503
EMBL:BC162643 IPI:IPI00485582 UniGene:Dr.75207
ProteinModelPortal:B3DH54 STRING:B3DH54 ArrayExpress:B3DH54
Uniprot:B3DH54
Length = 708
Score = 93 (37.8 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 23/76 (30%), Positives = 40/76 (52%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP---RPPCYCFVEFENARDAEDAI 62
S+ + V NL E ++ +F K + ++IP RP Y FVEFEN D+++A+
Sbjct: 467 SKVLVVNNLAFSASEDSLQSVFEKA-----VSIRIPQNNGRPKGYAFVEFENVEDSKEAL 521
Query: 63 RGRDGYNFDGCRLRVE 78
+ + +G +R+E
Sbjct: 522 ENCNNTDIEGRSIRLE 537
Score = 69 (29.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDD 184
+ V+GL + Q LKD A A RD+ + +G VD+ N +D K A +DD
Sbjct: 559 LFVKGLSDDTTDQTLKDSFDGAIAARIA-TDRDTGSSKGFGFVDFDNEQDCKAAKEAMDD 617
Query: 185 TE 186
E
Sbjct: 618 GE 619
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 118 (46.6 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 27/70 (38%), Positives = 40/70 (57%)
Query: 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67
T++VG L SD+ E + LF +G I + KIPP C FV++ N +AE+AI G
Sbjct: 522 TVFVGGLSSDVSEPTLHTLFKPFGLIQQV--KIPPGKNCG-FVKYSNREEAEEAIAAMQG 578
Query: 68 YNFDGCRLRV 77
+ G R+R+
Sbjct: 579 FVIGGNRVRL 588
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 115 (45.5 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 10 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 69
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 70 NGKSLDGKAIKVEQA 84
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 115 (45.5 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 26/75 (34%), Positives = 45/75 (60%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
+++G L ++ E +E +F KYGRI+++ L + + + FV FE+ DA+DA R
Sbjct: 11 LFIGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDM 70
Query: 66 DGYNFDGCRLRVELA 80
+G + DG ++VE A
Sbjct: 71 NGKSLDGKAIKVEQA 85
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 113 (44.8 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 28/76 (36%), Positives = 39/76 (51%)
Query: 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPR---PPCYCFVEFENARDAEDAIRG 64
T+ V NL + +F KYGR+ D+ + P P + FV F + RDA+DA
Sbjct: 15 TLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAA 74
Query: 65 RDGYNFDGCRLRVELA 80
DG DG LRV++A
Sbjct: 75 MDGAELDGRELRVQVA 90
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 113 (44.8 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 24/73 (32%), Positives = 40/73 (54%)
Query: 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67
++Y+G L + + + D F KYG I ++K CY FVE++ RDA+DA++ +G
Sbjct: 2 SLYIGRLSVETTQKNLNDHFSKYGTITRNDVK-KTNGRCYAFVEYKERRDADDALKALNG 60
Query: 68 YNFDGCRLRVELA 80
++ VE A
Sbjct: 61 TTLLNSKISVEWA 73
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 97 (39.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDA 58
M +T+YVGNL D+ E + LF + G + ++ + P YCFVEF R A
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFYEHRHA 59
Query: 59 EDAIRGRDGYNFDGCRLRVELA 80
A+ +G G ++V A
Sbjct: 60 ASALAAMNGRKIMGKEVKVNWA 81
Score = 55 (24.4 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKY 177
+ + V V L + +D+K G + A V +D S+G YG V + N D +
Sbjct: 93 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG-YGFVSFFNKWDAEN 151
Query: 178 AIRK-----LDDTEFRNPWA 192
AI++ L + R WA
Sbjct: 152 AIQQMGGQWLGGRQIRTNWA 171
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 97 (39.2 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDA 58
M +T+YVGNL D+ E + LF + G + ++ + P YCFVEF R A
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHA 59
Query: 59 EDAIRGRDGYNFDGCRLRVELA 80
A+ +G G ++V A
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA 81
Score = 55 (24.4 bits), Expect = 5.0e-05, Sum P(2) = 5.0e-05
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKY 177
+ + V V L + +D+K G + A V +D S+G YG V + N D +
Sbjct: 93 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG-YGFVSFFNKWDAEN 151
Query: 178 AIRK-----LDDTEFRNPWA 192
AI++ L + R WA
Sbjct: 152 AIQQMGGQWLGGRQIRTNWA 171
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 94 (38.1 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRG 64
+T+YVGNL D+ E + LF + G + ++ + P YCFVEF R A A+
Sbjct: 3 KTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHAAAALAA 61
Query: 65 RDGYNFDGCRLRVELA 80
+G G ++V A
Sbjct: 62 MNGRKIMGKEVKVNWA 77
Score = 55 (24.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 22/80 (27%), Positives = 35/80 (43%)
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKY 177
+ + V V L + +D+K G + A V +D S+G YG V + N D +
Sbjct: 89 NHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG-YGFVSFFNKWDAEN 147
Query: 178 AIRK-----LDDTEFRNPWA 192
AI++ L + R WA
Sbjct: 148 AIQQMGGQWLGGRQIRTNWA 167
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 114 (45.2 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
R +YVG + + +ED F K+G++L ++K Y FVEF+N + A DAI
Sbjct: 175 RRVYVGRISNKTTRESLEDSFLKFGKVLSCDVKNG-----YAFVEFDNEKSARDAIEEMH 229
Query: 67 GYNFDGCRLRVELAH 81
DG ++ VE +H
Sbjct: 230 DSIVDGEKILVEKSH 244
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 81 (33.6 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63
RT+YVGNL S + E + LF + G + ++ Y FVEF + A A++
Sbjct: 46 RTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQ 102
Score = 76 (31.8 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 25/79 (31%), Positives = 38/79 (48%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNPEDMKYAIR 180
+ V V L S Q L++ + GDV A+V RD+ T YG V Y E+ + AI
Sbjct: 135 FHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIE 194
Query: 181 KLDDTEFRNPWARGRITVK 199
+++ W GR T++
Sbjct: 195 QMN-----GQWL-GRRTIR 207
>ASPGD|ASPL0000005213 [details] [associations]
symbol:AN6074 species:162425 "Emericella nidulans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006379 "mRNA cleavage" evidence=IEA] [GO:0006378
"mRNA polyadenylation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301
InterPro:IPR025742 InterPro:IPR026896 Pfam:PF14327 Pfam:PF14304
OMA:QLAYAIF ProteinModelPortal:C8V2S8 EnsemblFungi:CADANIAT00006943
Uniprot:C8V2S8
Length = 293
Score = 112 (44.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP---RPPCYCFVEFENARDAED 60
R +++++GN+P ++ E +V+D+ G + L + P +P Y F +F +A A
Sbjct: 5 RAGKSVFLGNIPYNLTEEQVKDILSTAGTVTKFRLMMNPETGKPKGYGFADFADADAAAS 64
Query: 61 AIRGRDGYNFDGCRLRVELAH 81
A+R + Y G ++RV+ H
Sbjct: 65 AVRNLNDYEIMGRKIRVDWPH 85
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 87 (35.7 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 21/65 (32%), Positives = 36/65 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILD-IELKIPP-RPPCYCFVEFENARDAEDAIRGRD 66
+YV NL + ++++ F +YG+I + +K + + FV FENA DA A+ +
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 67 GYNFD 71
G+ FD
Sbjct: 277 GHKFD 281
Score = 86 (35.3 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 24/77 (31%), Positives = 38/77 (49%)
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YGVVDYTNPEDMKYAIRKLD 183
V V+ L S + DLK+ + G + A V +D EG +G V++ N +D A+ L+
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 184 DTEFRNP-WARGRITVK 199
+F + W GR K
Sbjct: 277 GHKFDDKEWYVGRAQKK 293
Score = 74 (31.1 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 22/82 (26%), Positives = 42/82 (51%)
Query: 4 RFSRT-IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAE 59
+F T +YVG+L ++ + ++ D F + G ++ + + + R Y +V F N +DA
Sbjct: 32 QFGNTSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAA 91
Query: 60 DAIRGRDGYNFDGCRLRVELAH 81
AI+ + G +RV +H
Sbjct: 92 RAIQELNYIPLYGKPIRVMYSH 113
Score = 65 (27.9 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 16/61 (26%), Positives = 29/61 (47%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRD 66
I++ NL I + D F +G I+ ++ + + Y FV++ N A+ AI +
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 67 G 67
G
Sbjct: 186 G 186
Score = 62 (26.9 bits), Expect = 0.00080, Sum P(2) = 0.00080
Identities = 19/57 (33%), Positives = 28/57 (49%)
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY---GVVDYTNPEDMKYAIRKL 182
V+ L S S + LK+ G V ++V RD GT G V + PE+ A+ +L
Sbjct: 322 VKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSKGSGFVAFATPEEATEAMSQL 378
>UNIPROTKB|Q7ZTJ8 [details] [associations]
symbol:srsf10 "MGC53149 protein" species:8355 "Xenopus
laevis" [GO:0006376 "mRNA splice site selection" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0006376 HOVERGEN:HBG107480 HSSP:P11940 CTD:10772 KO:K12900
EMBL:BC046695 RefSeq:NP_001079656.1 UniGene:Xl.6570
ProteinModelPortal:Q7ZTJ8 GeneID:379343 KEGG:xla:379343
Xenbase:XB-GENE-866220 Uniprot:Q7ZTJ8
Length = 258
Score = 111 (44.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 24/76 (31%), Positives = 44/76 (57%)
Query: 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRG 64
+++V N+ DIR ++ F +YG I+D+ + + RP + +V+FE+ RDAEDA+
Sbjct: 11 SLFVRNIADDIRSEDLRREFGRYGPIVDVYVPLDYYNRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGCRLRVELA 80
D G ++ ++ A
Sbjct: 71 LDKKWICGRQIEIQFA 86
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 89 (36.4 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 23/67 (34%), Positives = 35/67 (52%)
Query: 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV--SRDSEGTYGV--VDYTNPEDMKYAIRK 181
R+ V GLP S + ++L +H K GD+ + +D+ G+ V Y PE K A+ K
Sbjct: 228 RLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDK 287
Query: 182 LDDTEFR 188
LD F+
Sbjct: 288 LDKLPFQ 294
Score = 71 (30.1 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELK--IPPRPPCYCFVEFENARDAEDAI 62
I V N+P + E ++ +F + G I D++LK R + ++ F + + A+DAI
Sbjct: 6 IIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSDGRSRQFAYIGFRSEQKAQDAI 61
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 97 (39.2 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDA 58
M +T+YVGNL D+ E + LF + G + ++ + P YCFVEF R A
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHA 59
Query: 59 EDAIRGRDGYNFDGCRLRVELA 80
A+ +G G ++V A
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA 81
Score = 54 (24.1 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKYAI 179
+ V V L + +D+K G + A V +D S+G YG V + N D + AI
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG-YGFVSFFNKWDAENAI 164
Query: 180 RK-----LDDTEFRNPWA 192
++ L + R WA
Sbjct: 165 QQMGGQWLGGRQIRTNWA 182
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 97 (39.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDA 58
M +T+YVGNL D+ E + LF + G + ++ + P YCFVEF R A
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHA 59
Query: 59 EDAIRGRDGYNFDGCRLRVELA 80
A+ +G G ++V A
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA 81
Score = 54 (24.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKYAI 179
+ V V L + +D+K G + A V +D S+G YG V + N D + AI
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG-YGFVSFFNKWDAENAI 164
Query: 180 RK-----LDDTEFRNPWA 192
++ L + R WA
Sbjct: 165 QQMGGQWLGGRQIRTNWA 182
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 97 (39.2 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 26/82 (31%), Positives = 39/82 (47%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDA 58
M +T+YVGNL D+ E + LF + G + ++ + P YCFVEF R A
Sbjct: 1 MEDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDP-YCFVEFHEHRHA 59
Query: 59 EDAIRGRDGYNFDGCRLRVELA 80
A+ +G G ++V A
Sbjct: 60 AAALAAMNGRKIMGKEVKVNWA 81
Score = 54 (24.1 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 22/78 (28%), Positives = 34/78 (43%)
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-----SEGTYGVVDYTNPEDMKYAI 179
+ V V L + +D+K G + A V +D S+G YG V + N D + AI
Sbjct: 106 FHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG-YGFVSFFNKWDAENAI 164
Query: 180 RK-----LDDTEFRNPWA 192
++ L + R WA
Sbjct: 165 QQMGGQWLGGRQIRTNWA 182
>FB|FBgn0035692 [details] [associations]
symbol:CG13298 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0048812 "neuron projection morphogenesis"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005686 "U2 snRNP"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 KO:K12833
OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:AY089603
RefSeq:NP_648037.1 UniGene:Dm.1519 ProteinModelPortal:Q9VRV7
SMR:Q9VRV7 DIP:DIP-21174N IntAct:Q9VRV7 MINT:MINT-921416
STRING:Q9VRV7 PaxDb:Q9VRV7 PRIDE:Q9VRV7 EnsemblMetazoa:FBtr0077015
GeneID:38720 KEGG:dme:Dmel_CG13298 UCSC:CG13298-RA
FlyBase:FBgn0035692 InParanoid:Q9VRV7 OrthoDB:EOG4DV43Q
PhylomeDB:Q9VRV7 GenomeRNAi:38720 NextBio:810039 Bgee:Q9VRV7
GermOnline:CG13298 Uniprot:Q9VRV7
Length = 121
Score = 95 (38.5 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 23/64 (35%), Positives = 34/64 (53%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+R +YV NLP I E+ D+F K+G I I + P FV +E+ DA++A
Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73
Query: 66 DGYN 69
G+N
Sbjct: 74 SGFN 77
>UNIPROTKB|G4MTV6 [details] [associations]
symbol:MGG_01579 "Pre-mRNA branch site protein p14"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K12833 RefSeq:XP_003714557.1
ProteinModelPortal:G4MTV6 SMR:G4MTV6 EnsemblFungi:MGG_01579T0
GeneID:2679525 KEGG:mgr:MGG_01579 Uniprot:G4MTV6
Length = 115
Score = 95 (38.5 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 25/76 (32%), Positives = 38/76 (50%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+R ++V NL ++ E+ DLF K+G I + I FV +E+ DA+ A
Sbjct: 12 NRALFVKNLSYNVTPEELFDLFGKFGPIRQVRQGIASNTKGTAFVVYEDVMDAKQACDKL 71
Query: 66 DGYNFDGCRLRVELAH 81
+G+NF R V L H
Sbjct: 72 NGFNFQN-RYLVVLYH 86
>WB|WBGene00017929 [details] [associations]
symbol:grld-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR012921
Pfam:PF07744 EMBL:FO080227 PROSITE:PS50917 Gene3D:2.40.290.10
InterPro:IPR016194 SUPFAM:SSF100939 InterPro:IPR010912
GeneTree:ENSGT00530000063730 RefSeq:NP_741283.1
ProteinModelPortal:H2KYB8 SMR:H2KYB8 PRIDE:H2KYB8
EnsemblMetazoa:F29C4.7a.1 EnsemblMetazoa:F29C4.7a.2 GeneID:176827
KEGG:cel:CELE_F29C4.7 CTD:176827 WormBase:F29C4.7a OMA:ERNDCAR
Uniprot:H2KYB8
Length = 520
Score = 114 (45.2 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPC-YCFVEFENARDAEDA 61
+RT++VGN+PSD++E E+ +F ++G++ ++++K P Y FV F+ A A
Sbjct: 168 TRTLFVGNMPSDVKEREIRHVFEEHGKVEEVDIKTPINTDAAYAFVMFQTVDQAIQA 224
>RGD|1311067 [details] [associations]
symbol:Srsf10 "serine/arginine-rich splicing factor 10"
species:10116 "Rattus norvegicus" [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=ISO] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0016482 "cytoplasmic transport" evidence=ISO]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311067 GO:GO:0005654
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0016482
GO:GO:0048025 HOVERGEN:HBG107480 GO:GO:0000375 HOGENOM:HOG000276233
CTD:10772 eggNOG:NOG312850 KO:K12900 IPI:IPI00195918 EMBL:BC098831
RefSeq:NP_001020909.1 UniGene:Rn.162118 ProteinModelPortal:Q4KM38
PhosphoSite:Q4KM38 GeneID:362630 KEGG:rno:362630 UCSC:RGD:1311067
InParanoid:Q4KM38 NextBio:680679 ArrayExpress:Q4KM38
Genevestigator:Q4KM38 Uniprot:Q4KM38
Length = 164
Score = 105 (42.0 bits), Expect = 8.3e-05, P = 8.3e-05
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRG 64
+++V N+ D R ++ F +YG I+D+ + + RP + +V+FE+ RDAEDA+
Sbjct: 11 SLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAEDALHN 70
Query: 65 RDGYNFDGCRLRVELA 80
D G ++ ++ A
Sbjct: 71 LDRKWICGRQIEIQFA 86
>UNIPROTKB|E1BW94 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AADN02018477 IPI:IPI00572573 RefSeq:XP_419986.1
UniGene:Gga.2001 ProteinModelPortal:E1BW94 SMR:E1BW94 PRIDE:E1BW94
Ensembl:ENSGALT00000026618 GeneID:421976 KEGG:gga:421976
NextBio:20824670 Uniprot:E1BW94
Length = 125
Score = 94 (38.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+R +Y+ NLP I E+ D+F KYG I I + P +V +E+ DA++A
Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77
Query: 66 DGYN 69
G+N
Sbjct: 78 SGFN 81
>UNIPROTKB|Q2KIQ7 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
GeneTree:ENSGT00390000005908 CTD:51639 HOVERGEN:HBG039634
OrthoDB:EOG4X0MTT EMBL:DAAA02031677 EMBL:BC112548 IPI:IPI00698072
RefSeq:NP_001039482.1 UniGene:Bt.45988 SMR:Q2KIQ7 STRING:Q2KIQ7
Ensembl:ENSBTAT00000004418 GeneID:508876 KEGG:bta:508876
InParanoid:Q2KIQ7 NextBio:20868714 Uniprot:Q2KIQ7
Length = 125
Score = 94 (38.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+R +Y+ NLP I E+ D+F KYG I I + P +V +E+ DA++A
Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77
Query: 66 DGYN 69
G+N
Sbjct: 78 SGFN 81
>UNIPROTKB|E2RRA3 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AAEX03010780 RefSeq:XP_532889.1 ProteinModelPortal:E2RRA3
SMR:E2RRA3 PRIDE:E2RRA3 Ensembl:ENSCAFT00000006355 GeneID:475682
KEGG:cfa:475682 NextBio:20851470 Uniprot:E2RRA3
Length = 125
Score = 94 (38.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+R +Y+ NLP I E+ D+F KYG I I + P +V +E+ DA++A
Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77
Query: 66 DGYN 69
G+N
Sbjct: 78 SGFN 81
>UNIPROTKB|K7ELV6 [details] [associations]
symbol:CIRBP "Cold-inducible RNA-binding protein"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 Gene3D:3.30.70.330 EMBL:AC004221 EMBL:AC004258
HGNC:HGNC:1982 Ensembl:ENST00000588344 Uniprot:K7ELV6
Length = 70
Score = 94 (38.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 22/62 (35%), Positives = 35/62 (56%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DG 67
+G
Sbjct: 68 NG 69
>UNIPROTKB|Q9Y3B4 [details] [associations]
symbol:SF3B14 "Pre-mRNA branch site protein p14"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
EMBL:AF401310 EMBL:AF151868 EMBL:AF161523 EMBL:AF184213
EMBL:BC015463 IPI:IPI00032827 RefSeq:NP_057131.1 UniGene:Hs.177861
PDB:2F9D PDB:2F9J PDB:2FHO PDB:3LQV PDBsum:2F9D PDBsum:2F9J
PDBsum:2FHO PDBsum:3LQV ProteinModelPortal:Q9Y3B4 SMR:Q9Y3B4
IntAct:Q9Y3B4 MINT:MINT-3085643 STRING:Q9Y3B4 PhosphoSite:Q9Y3B4
DMDM:12585536 PaxDb:Q9Y3B4 PeptideAtlas:Q9Y3B4 PRIDE:Q9Y3B4
DNASU:51639 GeneID:51639 KEGG:hsa:51639 UCSC:uc002rev.3 CTD:51639
GeneCards:GC02M024290 HPA:HPA034829 HPA:HPA034830 MIM:607835
neXtProt:NX_Q9Y3B4 HOVERGEN:HBG039634 InParanoid:Q9Y3B4
OrthoDB:EOG4X0MTT PhylomeDB:Q9Y3B4 EvolutionaryTrace:Q9Y3B4
GenomeRNAi:51639 NextBio:55577 ArrayExpress:Q9Y3B4 Bgee:Q9Y3B4
Genevestigator:Q9Y3B4 GermOnline:ENSG00000115128 Uniprot:Q9Y3B4
Length = 125
Score = 94 (38.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+R +Y+ NLP I E+ D+F KYG I I + P +V +E+ DA++A
Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77
Query: 66 DGYN 69
G+N
Sbjct: 78 SGFN 81
>UNIPROTKB|F2Z5F1 [details] [associations]
symbol:LOC100521960 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:CU928810
RefSeq:XP_003125412.1 ProteinModelPortal:F2Z5F1 SMR:F2Z5F1
PRIDE:F2Z5F1 Ensembl:ENSSSCT00000009397 GeneID:100521960
KEGG:ssc:100521960 Uniprot:F2Z5F1
Length = 125
Score = 94 (38.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 22/64 (34%), Positives = 34/64 (53%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+R +Y+ NLP I E+ D+F KYG I I + P +V +E+ DA++A
Sbjct: 18 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 77
Query: 66 DGYN 69
G+N
Sbjct: 78 SGFN 81
WARNING: HSPs involving 136 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.140 0.435 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 270 167 0.00075 108 3 11 22 0.39 32
30 0.46 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 386
No. of states in DFA: 597 (63 KB)
Total size of DFA: 163 KB (2096 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 13.83u 0.11s 13.94t Elapsed: 00:00:01
Total cpu time: 13.85u 0.11s 13.96t Elapsed: 00:00:01
Start: Thu May 9 21:10:24 2013 End: Thu May 9 21:10:25 2013
WARNINGS ISSUED: 2