BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024267
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/212 (65%), Positives = 157/212 (74%), Gaps = 9/212 (4%)
Query: 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAED 60
MS R SRT+YVGNLP DIRE EVEDLF KYG ++ I+LK+PPRPP Y FVEF++ARDAED
Sbjct: 1 MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60
Query: 61 AIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGIS 120
AI GRDGY+FDG RLRVELAHGG SSD G GG GG G G S
Sbjct: 61 AIHGRDGYDFDGHRLRVELAHGGR----RSSD--DTRGSFNGGGRGGGRGRGDGGSRGPS 114
Query: 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIR 180
R SE+RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT GVVDYT EDMKYA++
Sbjct: 115 RRSEFRVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALK 174
Query: 181 KLDDTEFRNPWARGRITVKRYDRSPSRSRSRS 212
KLDDTEFRN ++ G + V+ YD SR SRS
Sbjct: 175 KLDDTEFRNAFSNGYVRVREYD---SRKDSRS 203
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 174 bits (441), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 113/240 (47%), Positives = 143/240 (59%), Gaps = 18/240 (7%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SEYRVI
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSEYRVI 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFR 181
Query: 189 NPWARGRITVKRYD--RSPSRSRSRSRSRSRSRSRIVRRNRSKSLERSVSRSVSRSMSAS 246
+ + D RSPS RSRSRS + + + + + + + + ++ A+
Sbjct: 182 SHEGETAYIRVKVDGPRSPSYGRSRSRSVVVAEAVVGATAEAAVIPQEEAEDLHATLPAT 241
>sp|Q9D0B0|SRSF9_MOUSE Serine/arginine-rich splicing factor 9 OS=Mus musculus GN=Srsf9
PE=1 SV=1
Length = 222
Score = 172 bits (436), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 95/181 (52%), Positives = 120/181 (66%), Gaps = 24/181 (13%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLPSD+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 17 IYVGNLPSDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 76
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++ CRLRVE P + RGG+ G G +R S++RV+
Sbjct: 77 DYGQCRLRVEF--------PRTYGGRGGWPRGARNGP-------------PTRRSDFRVL 115
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKLDDT+FR
Sbjct: 116 VSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTKFR 172
Query: 189 N 189
+
Sbjct: 173 S 173
>sp|Q5PPI1|SRSF9_RAT Serine/arginine-rich splicing factor 9 OS=Rattus norvegicus
GN=Srsf9 PE=1 SV=1
Length = 221
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 96/183 (52%), Positives = 122/183 (66%), Gaps = 28/183 (15%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGCRLRVEL--AHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYR 126
++ CRLRVE A+GG G P +S R G +R S++R
Sbjct: 76 DYGQCRLRVEFPRAYGGRGGWPRAS--RNG---------------------PPTRRSDFR 112
Query: 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186
V+V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKLDDT+
Sbjct: 113 VLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---MGMVEYLRKEDMEYALRKLDDTK 169
Query: 187 FRN 189
FR+
Sbjct: 170 FRS 172
>sp|Q9NEW6|RSP3_CAEEL Probable splicing factor, arginine/serine-rich 3 OS=Caenorhabditis
elegans GN=rsp-3 PE=1 SV=2
Length = 258
Score = 169 bits (429), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 102/184 (55%), Positives = 126/184 (68%), Gaps = 7/184 (3%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
+ +YVGNLP D+RE EVED+F+KYGRI +++K R P + FVEFE+ RDAEDA+R R
Sbjct: 8 DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK-SGRGPAFAFVEFEDHRDAEDAVRAR 66
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125
DGY FDG R+RVE G RGP + G G G G G G R + Y
Sbjct: 67 DGYEFDGRRIRVEFTRGVGPRGPGGRPLQDG---GDHRGGDFRGGRGGGRGGGPQRRTGY 123
Query: 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185
RVIV GLP + SWQDLKDHMR AGDVC+A+V+RD GT GVV++T ED+KYA+RKLDDT
Sbjct: 124 RVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD--GT-GVVEFTRYEDVKYAVRKLDDT 180
Query: 186 EFRN 189
+FR+
Sbjct: 181 KFRS 184
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 167 bits (423), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 102/181 (56%), Positives = 119/181 (65%), Gaps = 16/181 (8%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 76
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G G G G SR SEYRVI
Sbjct: 77 DYDGYRLRVEFPRSGRGGGRGGGGGGGVGAPRGRYGPP-------------SRRSEYRVI 123
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR
Sbjct: 124 VSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFR 180
Query: 189 N 189
+
Sbjct: 181 S 181
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 166 bits (420), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 113/187 (60%), Positives = 133/187 (71%), Gaps = 9/187 (4%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGA-----GRFG-ISRH 122
++DG RLRVE G G G GG GGGG GG GG G G G GR+G SR
Sbjct: 78 DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137
Query: 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
SEYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKL
Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKL 194
Query: 183 DDTEFRN 189
D+T+FR+
Sbjct: 195 DNTKFRS 201
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 164 bits (415), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 108/181 (59%), Positives = 125/181 (69%), Gaps = 6/181 (3%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR +VED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ RDGY
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYARDGY 76
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G GG GGGG GG GG G SR SEYRVI
Sbjct: 77 DYDGYRLRVEFPRSGRG---MGRGGFGGGGGGGGGGGGGGGGAPRGRYGPPSRRSEYRVI 133
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR
Sbjct: 134 VSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKLDNTKFR 190
Query: 189 N 189
+
Sbjct: 191 S 191
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 117/180 (65%), Gaps = 16/180 (8%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFR 181
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1 PE=2
SV=3
Length = 248
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 117/180 (65%), Gaps = 16/180 (8%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFR 181
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 117/180 (65%), Gaps = 16/180 (8%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFR 181
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 117/180 (65%), Gaps = 16/180 (8%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFR 181
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1 PE=2
SV=1
Length = 248
Score = 162 bits (409), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 99/180 (55%), Positives = 117/180 (65%), Gaps = 16/180 (8%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP DIR ++ED+FYKYG I DI+LK P + FVEFE+ RDAEDA+ GRDGY
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++DG RLRVE G G G GG G SR SE RV+
Sbjct: 78 DYDGYRLRVEFPRSGRGTGRGGG-------------GGGGGGAPRGRYGPPSRRSENRVV 124
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V RD GT GVV++ EDM YA+RKLD+T+FR
Sbjct: 125 VSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GT-GVVEFVRKEDMTYAVRKLDNTKFR 181
>sp|Q13242|SRSF9_HUMAN Serine/arginine-rich splicing factor 9 OS=Homo sapiens GN=SRSF9
PE=1 SV=1
Length = 221
Score = 160 bits (404), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/181 (50%), Positives = 117/181 (64%), Gaps = 24/181 (13%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IYVGNLP+D+RE ++EDLFYKYGRI +IELK + FV FE+ RDAEDAI GR+GY
Sbjct: 16 IYVGNLPTDVREKDLEDLFYKYGRIREIELKNRHGLVPFAFVRFEDPRDAEDAIYGRNGY 75
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
++ CRLRVE P + G G G +R S++RV+
Sbjct: 76 DYGQCRLRVEF--------PRTY-------------GGRGGWPRGGRNGPPTRRSDFRVL 114
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V GLP S SWQDLKDHMR+AGDVC+A+V +D G+V+Y EDM+YA+RKLDDT+FR
Sbjct: 115 VSGLPPSGSWQDLKDHMREAGDVCYADVQKDG---VGMVEYLRKEDMEYALRKLDDTKFR 171
Query: 189 N 189
+
Sbjct: 172 S 172
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 115 bits (289), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 104/179 (58%), Gaps = 17/179 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLKN-----GYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
+ G R+ VE A RGP RR G G G G G +G ++G +EYR+I
Sbjct: 59 DLCGERVIVEHA-----RGP----RRDGSYGSGRSGYGYRRSGRD--KYGPPTRTEYRLI 107
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187
V L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KLD TE
Sbjct: 108 VENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKLDGTEV 165
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 114 bits (284), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 72/179 (40%), Positives = 105/179 (58%), Gaps = 17/179 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L RE +VE F YG+IL+++LK Y FVEF++ RDA+DA+ +G
Sbjct: 4 VYIGRLSYQARERDVERFFKGYGKILEVDLK-----NGYGFVEFDDLRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
+ G R+ VE A RGP R G YG +G +G +G ++G +EYR+I
Sbjct: 59 DLCGERVIVEHA-----RGPR---RDGSYG---SGRSGYGYRRSGRDKYGPPTRTEYRLI 107
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187
V L S SWQDLKD+MR+AG+V +A+ + + GV+++ + DMK A+ KLD TE
Sbjct: 108 VENLSSRCSWQDLKDYMRQAGEVTYADAHKGRKNE-GVIEFVSYSDMKRALEKLDGTEV 165
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 77/182 (42%), Positives = 100/182 (54%), Gaps = 9/182 (4%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG LP +RE ++E F YGR DI +K Y FVEFE+ RDA+DA+ +G
Sbjct: 6 VYVGGLPYGVRERDLERFFKGYGRTRDILIK-----NGYGFVEFEDYRDADDAVYELNGK 60
Query: 69 NFDGCRLRVELAHG---GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125
G R+ VE A G GS R G GGGG + R+G +EY
Sbjct: 61 ELLGERVVVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNEKNKNSRSSSRYGPPLRTEY 120
Query: 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185
R+IV L S SWQDLKD+MR+AG+V +A+ + GVV++ + DMK AI KLDDT
Sbjct: 121 RLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQRRNE-GVVEFASLSDMKTAIEKLDDT 179
Query: 186 EF 187
E
Sbjct: 180 EL 181
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 103/179 (57%), Gaps = 11/179 (6%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L+++LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLEVDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G R+ VE A RGP YG GG + +G ++G +EYR+I
Sbjct: 59 ELCGERVIVEHA-----RGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEYRLI 113
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187
V L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KLD TE
Sbjct: 114 VENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKLDGTEI 171
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6 PE=2
SV=1
Length = 345
Score = 103 bits (257), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 102/179 (56%), Gaps = 11/179 (6%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G L ++RE +++ F YGR+L I+LK Y FVEFE++RDA+DA+ +G
Sbjct: 4 VYIGRLSYNVREKDIQRFFSGYGRLLGIDLK-----NGYGFVEFEDSRDADDAVYELNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G R+ VE A RGP YG GG + +G ++G +E+R+I
Sbjct: 59 ELCGERVIVEHA-----RGPRRDRDGYSYGSRSGGGGYSSRRTSGRDKYGPPVRTEFRLI 113
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187
V L S SWQDLKD MR+AG+V +A+ ++ GV+++ + DMK A+ KLD TE
Sbjct: 114 VENLSSRCSWQDLKDFMRQAGEVTYADAHKERTNE-GVIEFRSYSDMKRALDKLDGTEI 171
>sp|P78814|SRP2_SCHPO Pre-mRNA-splicing factor srp2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=srp2 PE=1 SV=2
Length = 365
Score = 84.7 bits (208), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/175 (32%), Positives = 84/175 (48%), Gaps = 25/175 (14%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
++VG +P ++ D F YG+ILD +L + FVE E+ARDA D + G
Sbjct: 6 LFVGRIPPQATREDMMDFFKGYGQILDCKLMN-----GFGFVEVEDARDARDIVNDFQGK 60
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
F G R+ VE A G + A ++ R + +R+I
Sbjct: 61 EFMGSRIVVEPARGERR-------------------RRENFRESAASKYPRPRRTGFRLI 101
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183
V L SWQDLKD MRKAG+ F + R++ G GVV+++ EDM+ A+ L+
Sbjct: 102 VENLSEDVSWQDLKDVMRKAGEPTFTDAHRENPGA-GVVEFSTEEDMRNALTSLN 155
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 89/195 (45%), Gaps = 47/195 (24%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAHGG----------------SGRGPSSSDRRGGYGGGGAGGAGGAGAGA 112
C RV + H S R P + DRR
Sbjct: 61 EL--CSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN-DRRNAP--------------- 102
Query: 113 GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNP 172
+E R+IV L S SWQDLKD MR+AG+V FA+ R + GVV++ +
Sbjct: 103 -------PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR-PKLNEGVVEFASY 154
Query: 173 EDMKYAIRKLDDTEF 187
D+K AI KL E
Sbjct: 155 GDLKNAIEKLSGKEI 169
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 89/195 (45%), Gaps = 47/195 (24%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAHGG----------------SGRGPSSSDRRGGYGGGGAGGAGGAGAGA 112
C RV + H S R P + DRR
Sbjct: 61 EL--CSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN-DRRNAP--------------- 102
Query: 113 GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNP 172
+E R+IV L S SWQDLKD MR+AG+V FA+ R + GVV++ +
Sbjct: 103 -------PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR-PKLNEGVVEFASY 154
Query: 173 EDMKYAIRKLDDTEF 187
D+K AI KL E
Sbjct: 155 GDLKNAIEKLSGKEI 169
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 82.8 bits (203), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 68/195 (34%), Positives = 89/195 (45%), Gaps = 47/195 (24%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++G L RE +VE F YGRI DI+LK + FVEFE+ RDA+DA+ DG
Sbjct: 6 VFIGRLNPAAREKDVERFFKGYGRIRDIDLK-----RGFGFVEFEDPRDADDAVYELDGK 60
Query: 69 NFDGCRLRVELAHGG----------------SGRGPSSSDRRGGYGGGGAGGAGGAGAGA 112
C RV + H S R P + DRR
Sbjct: 61 EL--CSERVTIEHARARSRGGRGRGRYSDRFSSRRPRN-DRRNAP--------------- 102
Query: 113 GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNP 172
+E R+IV L S SWQDLKD MR+AG+V FA+ R + GVV++ +
Sbjct: 103 -------PVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHR-PKLNEGVVEFASY 154
Query: 173 EDMKYAIRKLDDTEF 187
D+K AI KL E
Sbjct: 155 GDLKNAIEKLSGKEI 169
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 90/175 (51%), Gaps = 10/175 (5%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G LP+ + +VE F YG++ D+ +K + FV+F++ RDA+DA+ +G
Sbjct: 4 VYIGRLPNRASDRDVEHFFRGYGKLSDVIMK-----NGFGFVDFQDQRDADDAVHDLNGK 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G R+ +E G + +R G G G + R+ + +R++
Sbjct: 59 ELCGERVILEFPRRKVG---YNEERSGSGFRGREPTFRKGGERQFSNRYSRPCSTRFRLV 115
Query: 129 VRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182
+ L + SWQD+KDH+RK G + ++E + + +V +T+ +D++ A+ KL
Sbjct: 116 IDNLSTRYSWQDIKDHIRKLGIEPTYSEAHKRNVNQ-AIVCFTSHDDLRDAMNKL 169
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1 OS=Caenorhabditis
elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 88/193 (45%), Gaps = 21/193 (10%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
IY+G L S + E ++E F YG+I D+ LK + FVEF++ RDAEDA+ +G
Sbjct: 5 IYIGRLTSRVSEKDIEHFFRGYGQIRDVLLKN-----GFGFVEFDDKRDAEDAVHDLNGK 59
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGA-------------GAGAGAG 115
G R+ ++ + G G GG GG G G
Sbjct: 60 ELGGERVILDYSKPRGGGGDRGGFGGGGRGGARVSSYSGGGGGGRDRFDRYDRGPPRRES 119
Query: 116 RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPED 174
R+G + +RV+V L S SWQDLKD +R+ G + +AE + ++ + P D
Sbjct: 120 RYGRPYSTRHRVVVENLSSRISWQDLKDQVRRQGVEPTYAEAHK--RPNEALLCFATPSD 177
Query: 175 MKYAIRKLDDTEF 187
+K I K D +
Sbjct: 178 LKRCIEKCDGMDL 190
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6
OS=Caenorhabditis elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 67.0 bits (162), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 2/72 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG LPSD E+E++F ++GRI ++ + RPP + FVE+++ RDAEDA+R DG
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIR--KVWVARRPPGFAFVEYDDVRDAEDAVRALDGS 62
Query: 69 NFDGCRLRVELA 80
G R RVEL+
Sbjct: 63 RICGVRARVELS 74
Score = 31.2 bits (69), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183
+V V GLPS A+ Q+L++ + G + V+R G + V+Y + D + A+R LD
Sbjct: 4 KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPG-FAFVEYDDVRDAEDAVRALD 60
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 63.5 bits (153), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG L S R ++E LF +YGR+ D+++K Y FVEF + RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFGDPRDADDARHYLDGR 67
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGG 101
+FDG R+ VE + G RG D RG G G
Sbjct: 68 DFDGSRITVEFSRGAP-RGSRDFDSRGPPPGAG 99
>sp|Q02427|RBP1_DROME RNA-binding protein 1 OS=Drosophila melanogaster GN=Rbp1 PE=2
SV=3
Length = 144
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/71 (46%), Positives = 45/71 (63%), Gaps = 2/71 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL S ++E+E F KYG + ++ + PP + FVEFE+ RDAEDA R DG
Sbjct: 13 VYVGNLGSSASKHEIEGAFAKYGPLRNV--WVARNPPGFAFVEFEDRRDAEDATRALDGT 70
Query: 69 NFDGCRLRVEL 79
G R+RVE+
Sbjct: 71 RCCGTRIRVEM 81
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVAR--NPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAHGGS---GRGPSSS 91
GCR+RVEL++G RGP S
Sbjct: 70 TLCGCRVRVELSNGEKRSRNRGPPPS 95
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVAR--NPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAHGGS---GRGPSSS 91
GCR+RVEL++G RGP S
Sbjct: 70 TLCGCRVRVELSNGEKRSRNRGPPPS 95
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 5/86 (5%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL ++ + E+E F YG + + + PP + FVEFE+ RDA DA+R DG
Sbjct: 12 VYVGNLGNNGNKTELERAFGYYGPLRSVWVAR--NPPGFAFVEFEDPRDAADAVRELDGR 69
Query: 69 NFDGCRLRVELAHGGS---GRGPSSS 91
GCR+RVEL++G RGP S
Sbjct: 70 TLCGCRVRVELSNGEKRSRNRGPPPS 95
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis
thaliana GN=RSP31 PE=1 SV=2
Length = 264
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66
R ++VGN + R+ ++E LF KYGR+ +++K Y FV FE+ RDAEDAIR D
Sbjct: 2 RPVFVGNFEYETRQSDLERLFDKYGRVDRVDMKS-----GYAFVYFEDERDAEDAIRKLD 56
Query: 67 GYNF--DGCRLRVELAHGGSGR 86
+ F + RL VE A G GR
Sbjct: 57 NFPFGYEKRRLSVEWAKGERGR 78
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis
thaliana GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 61.6 bits (148), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 5/74 (6%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVG L S R ++E LF +YGR+ D+++K Y FVEF + RDA+DA DG
Sbjct: 13 LYVGRLSSRTRTRDLERLFSRYGRVRDVDMKRD-----YAFVEFSDPRDADDARYYLDGR 67
Query: 69 NFDGCRLRVELAHG 82
+FDG R+ VE + G
Sbjct: 68 DFDGSRITVEASRG 81
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + + E+E F YG + + I PP + FVEFE+ RDAEDA+RG DG
Sbjct: 42 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 99
Query: 69 NFDGCRLRVELAHG 82
G R+RVEL+ G
Sbjct: 100 VICGSRVRVELSTG 113
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 60.5 bits (145), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/89 (39%), Positives = 50/89 (56%), Gaps = 11/89 (12%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+Y+G +P + RE +VE YG+I +I +K + FV+FE++RDAEDA DG
Sbjct: 4 LYLGKIPYNARERDVERFLKGYGKINNISMKY-----GFAFVDFEDSRDAEDACHDLDGK 58
Query: 69 NFDG--CRLRVELAHGGSGRGPSSSDRRG 95
+G RL VE+A G P +DR G
Sbjct: 59 TMEGSSMRLVVEMARG----KPRGNDRHG 83
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + + E+E F YG + + I PP + FVEFE+ RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGCRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7
PE=2 SV=1
Length = 235
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/74 (47%), Positives = 46/74 (62%), Gaps = 2/74 (2%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+YVGNL + + E+E F YG + + I PP + FVEFE+ RDAEDA+RG DG
Sbjct: 13 VYVGNLGTGAGKGELERAFSYYGPLRTV--WIARNPPGFAFVEFEDPRDAEDAVRGLDGK 70
Query: 69 NFDGCRLRVELAHG 82
G R+RVEL+ G
Sbjct: 71 VICGSRVRVELSTG 84
>sp|Q9P3U1|YKX5_SCHPO Uncharacterized RNA-binding protein C328.05 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPAC328.05 PE=4 SV=3
Length = 464
Score = 59.7 bits (143), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/202 (26%), Positives = 88/202 (43%), Gaps = 28/202 (13%)
Query: 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYC-FVEFENARDAEDAIRG 64
R +YVGNL +R +E+++ + G +L+ E L +P C +E+ A +A AI+
Sbjct: 77 RRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKT 136
Query: 65 RDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSE 124
F G + + DR G + A G +
Sbjct: 137 LSNQKFMGRLVYIR------------EDREQN------ARFGSSSVSPSASSNGKDSEPD 178
Query: 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRK 181
++ V LP + WQDLKD R+AG V A++ + EG G+V ++ ++ +AI+
Sbjct: 179 RQLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQM 238
Query: 182 LDDTEFRNPWARGRITVKRYDR 203
L +T+F GR R DR
Sbjct: 239 LHNTDF-----MGRTLEVRLDR 255
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)
Query: 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAED 60
G S IYVGNLP + + DLF G ++ + P R + V+FEN DA
Sbjct: 306 GPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAAS 365
Query: 61 AIRGRDGYNFDGCRLRVELAH 81
+I +GY + G L++ AH
Sbjct: 366 SIEKLNGYRYGGRPLQLSYAH 386
Score = 37.7 bits (86), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YGVVDYTNPEDMKYA 178
E RV V L W +LK+ M + G+V E+ G +++Y+ E+ + A
Sbjct: 74 QQERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTA 133
Query: 179 IRKLDDTEFRNPWARGRITVKRYDR 203
I+ L + +F GR+ R DR
Sbjct: 134 IKTLSNQKF-----MGRLVYIREDR 153
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|Q8C7Q4|RBM4_MOUSE RNA-binding protein 4 OS=Mus musculus GN=Rbm4 PE=1 SV=1
Length = 361
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 46/197 (23%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G + VE + S + ++
Sbjct: 59 KLHGVNINVEASKNKSK-------------------------------------ASTKLH 81
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V + + + Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 82 VGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 189 NPWARGRITVKRYDRSP 205
+++ R +P
Sbjct: 138 GKRMHVQLSTSRLRTAP 154
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAG 103
D F G R+ V+L+ P D+ G Y G G
Sbjct: 132 DNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEG 169
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 46/197 (23%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G + VE + +S+ ++
Sbjct: 59 KLHGVNINVE---ASKNKSKAST----------------------------------KLH 81
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V + + + Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 82 VGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 189 NPWARGRITVKRYDRSP 205
+++ R +P
Sbjct: 138 GKRMHVQLSTSRLRTAP 154
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAG 103
D F G R+ V+L+ P D+ G Y G G
Sbjct: 132 DNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEG 169
>sp|Q9BQ04|RBM4B_HUMAN RNA-binding protein 4B OS=Homo sapiens GN=RBM4B PE=1 SV=1
Length = 359
Score = 58.5 bits (140), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 46/197 (23%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G + VE + +S+ ++
Sbjct: 59 KLHGVNINVE---ASKNKSKAST----------------------------------KLH 81
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V + + + Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 82 VGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 189 NPWARGRITVKRYDRSP 205
+++ R +P
Sbjct: 138 GKRMHVQLSTSRLRTAP 154
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAG 103
D F G R+ V+L+ P D+ G Y G G
Sbjct: 132 DNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEG 169
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 9/97 (9%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGR 65
++VG L D E +E +F KYG+I ++ + + R + FV FEN DA+DA+
Sbjct: 8 LFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGA 102
+G + DG ++RV+ A G SS +R GY GG A
Sbjct: 68 NGKSVDGRQIRVDQA------GKSSDNRSRGYRGGSA 98
>sp|Q06AT9|RBM4B_PIG RNA-binding protein 4B OS=Sus scrofa GN=RBM4B PE=2 SV=1
Length = 359
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 78/197 (39%), Gaps = 46/197 (23%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G + VE + S + ++
Sbjct: 59 KLHGVNINVEASKNKSK-------------------------------------ASTKLH 81
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V + + + Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 82 VGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 189 NPWARGRITVKRYDRSP 205
+++ R +P
Sbjct: 138 GKRMHVQLSTSRLRTAP 154
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAG 103
D F G R+ V+L+ P D+ G Y G G
Sbjct: 132 DNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEG 169
>sp|Q64LC9|RBM4B_RAT RNA-binding protein 4B OS=Rattus norvegicus GN=Rbm4b PE=2 SV=2
Length = 357
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 46/197 (23%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G + VE + +S+ ++
Sbjct: 59 KLHGVNINVE---ASKNKSKAST----------------------------------KLH 81
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V + + + Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 82 VGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 189 NPWARGRITVKRYDRSP 205
+++ R +P
Sbjct: 138 GKRMHVQLSTSRLRTAP 154
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAG 103
D F G R+ V+L+ P D+ G Y G G
Sbjct: 132 DNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEG 169
>sp|Q8VE92|RBM4B_MOUSE RNA-binding protein 4B OS=Mus musculus GN=Rbm4b PE=1 SV=1
Length = 357
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 79/197 (40%), Gaps = 46/197 (23%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G + VE + +S+ ++
Sbjct: 59 KLHGVNINVE---ASKNKSKAST----------------------------------KLH 81
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V + + + Q+L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 82 VGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 189 NPWARGRITVKRYDRSP 205
+++ R +P
Sbjct: 138 GKRMHVQLSTSRLRTAP 154
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 5/98 (5%)
Query: 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65
S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIRG
Sbjct: 77 STKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIRGL 131
Query: 66 DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAG 103
D F G R+ V+L+ P D+ G Y G G
Sbjct: 132 DNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEG 169
>sp|Q3MHX3|RBM4_BOVIN RNA-binding protein 4 OS=Bos taurus GN=RBM4 PE=2 SV=1
Length = 362
Score = 57.8 bits (138), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 78/197 (39%), Gaps = 46/197 (23%)
Query: 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68
+++GNLP + E E+ LF +YG++L+ ++ Y FV E+ AEDAIR Y
Sbjct: 4 LFIGNLPREATEQEIRSLFEQYGKVLECDI-----IKNYGFVHIEDKTAAEDAIRNLHHY 58
Query: 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI 128
G + VE + S + ++
Sbjct: 59 KLHGVNINVEASKNKSK-------------------------------------TSTKLH 81
Query: 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188
V + + + ++L+ + G V ++ +D Y V ED AIR LD+TEF+
Sbjct: 82 VGNISPTCTNKELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ 137
Query: 189 NPWARGRITVKRYDRSP 205
+++ R +P
Sbjct: 138 GKRMHVQLSTSRLRTAP 154
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63
+ S ++VGN+ E+ F +YG +++ ++ Y FV E A DA +AIR
Sbjct: 75 KTSTKLHVGNISPTCTNKELRAKFEEYGPVIECDIVKD-----YAFVHMERAEDAVEAIR 129
Query: 64 GRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAG 103
G D F G R+ V+L+ P D+ G Y G G
Sbjct: 130 GLDNTEFQGKRMHVQLSTSRLRTAPGMGDQSGCYRCGKEG 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 108,807,221
Number of Sequences: 539616
Number of extensions: 5378933
Number of successful extensions: 104505
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1509
Number of HSP's successfully gapped in prelim test: 937
Number of HSP's that attempted gapping in prelim test: 42690
Number of HSP's gapped (non-prelim): 31540
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)