Query 024267
Match_columns 270
No_of_seqs 292 out of 2534
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:19:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 2.7E-33 5.8E-38 230.6 20.2 163 4-203 105-274 (346)
2 KOG0105 Alternative splicing f 100.0 2.4E-31 5.3E-36 190.4 21.3 194 1-206 1-194 (241)
3 TIGR01645 half-pint poly-U bin 100.0 2.5E-31 5.5E-36 229.9 20.7 174 4-205 105-285 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 2.6E-30 5.5E-35 217.7 20.2 163 4-203 1-170 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 8.7E-30 1.9E-34 221.4 20.8 172 4-203 87-265 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.5E-28 3.2E-33 207.0 24.0 196 5-204 88-349 (352)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 9.6E-29 2.1E-33 214.6 21.5 170 5-202 1-172 (481)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 6.4E-28 1.4E-32 209.5 24.3 196 4-202 273-478 (481)
9 KOG0148 Apoptosis-promoting RN 100.0 8.1E-29 1.8E-33 187.7 14.5 170 7-201 63-235 (321)
10 TIGR01628 PABP-1234 polyadenyl 100.0 3E-28 6.6E-33 216.5 19.6 158 8-202 2-165 (562)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 9.8E-28 2.1E-32 207.4 20.2 191 5-203 57-306 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 7.1E-27 1.5E-31 205.9 22.0 185 4-202 173-373 (509)
13 TIGR01628 PABP-1234 polyadenyl 100.0 1.9E-27 4.1E-32 211.4 17.9 178 5-203 177-363 (562)
14 KOG0144 RNA-binding protein CU 100.0 6.1E-28 1.3E-32 193.9 13.1 169 4-207 32-209 (510)
15 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.1E-26 2.3E-31 204.7 21.5 188 4-202 293-500 (509)
16 KOG0117 Heterogeneous nuclear 100.0 3.1E-27 6.8E-32 190.6 16.3 189 6-202 83-329 (506)
17 KOG0109 RNA-binding protein LA 100.0 6.2E-28 1.3E-32 184.7 10.9 146 7-202 3-148 (346)
18 KOG0145 RNA-binding protein EL 100.0 3.9E-27 8.5E-32 177.7 14.5 164 4-204 39-209 (360)
19 KOG0131 Splicing factor 3b, su 99.9 3.4E-27 7.3E-32 168.9 12.3 165 4-206 7-179 (203)
20 TIGR01622 SF-CC1 splicing fact 99.9 1.2E-25 2.6E-30 195.5 22.6 193 6-202 186-446 (457)
21 KOG0127 Nucleolar protein fibr 99.9 8.1E-26 1.8E-30 186.6 15.7 181 7-202 6-194 (678)
22 KOG0127 Nucleolar protein fibr 99.9 5.5E-24 1.2E-28 175.9 19.3 178 5-182 116-354 (678)
23 KOG0145 RNA-binding protein EL 99.9 2.5E-24 5.3E-29 162.7 15.1 192 7-202 128-356 (360)
24 KOG0124 Polypyrimidine tract-b 99.9 2E-25 4.3E-30 176.1 8.0 168 7-202 114-288 (544)
25 KOG0106 Alternative splicing f 99.9 1.9E-24 4.1E-29 162.7 11.2 164 7-198 2-165 (216)
26 KOG4206 Spliceosomal protein s 99.9 4.3E-22 9.4E-27 148.4 18.5 196 2-201 5-219 (221)
27 KOG0123 Polyadenylate-binding 99.9 1.4E-22 3E-27 168.1 16.7 150 7-204 2-153 (369)
28 KOG0107 Alternative splicing f 99.9 3.3E-22 7.1E-27 142.6 14.0 78 124-206 10-87 (195)
29 KOG0110 RNA-binding protein (R 99.9 1.8E-22 4E-27 171.8 13.5 166 8-203 517-692 (725)
30 KOG0123 Polyadenylate-binding 99.9 4.6E-21 9.9E-26 159.1 14.8 168 4-203 74-245 (369)
31 TIGR01645 half-pint poly-U bin 99.9 7.3E-20 1.6E-24 159.1 22.6 79 5-83 203-284 (612)
32 PLN03134 glycine-rich RNA-bind 99.9 2.8E-20 6E-25 135.0 14.7 82 4-85 32-116 (144)
33 KOG0107 Alternative splicing f 99.9 8.3E-20 1.8E-24 130.3 16.0 78 4-83 8-85 (195)
34 KOG1457 RNA binding protein (c 99.9 4.1E-20 9E-25 136.8 15.0 184 5-188 33-274 (284)
35 KOG0148 Apoptosis-promoting RN 99.8 1.4E-20 3E-25 143.2 10.6 139 1-205 1-143 (321)
36 KOG4205 RNA-binding protein mu 99.8 1.3E-20 2.8E-25 151.1 11.0 167 1-202 1-174 (311)
37 KOG0146 RNA-binding protein ET 99.8 5.7E-20 1.2E-24 139.7 13.7 193 5-201 18-362 (371)
38 KOG0147 Transcriptional coacti 99.8 3.7E-20 8.1E-25 153.8 13.7 189 8-201 280-525 (549)
39 KOG0144 RNA-binding protein CU 99.8 4E-20 8.6E-25 149.2 12.9 81 5-85 123-208 (510)
40 KOG4207 Predicted splicing fac 99.8 1.9E-19 4E-24 131.9 13.6 80 4-83 11-93 (256)
41 KOG0147 Transcriptional coacti 99.8 4.2E-21 9E-26 159.4 5.1 173 4-202 177-356 (549)
42 KOG4676 Splicing factor, argin 99.8 1.1E-20 2.4E-25 150.5 5.5 182 5-188 6-214 (479)
43 KOG1190 Polypyrimidine tract-b 99.8 6.6E-18 1.4E-22 135.6 17.6 192 6-202 297-489 (492)
44 KOG4207 Predicted splicing fac 99.8 2.1E-18 4.6E-23 126.4 12.5 77 122-202 11-91 (256)
45 KOG0121 Nuclear cap-binding pr 99.8 2.8E-19 6.1E-24 120.9 6.9 80 4-83 34-116 (153)
46 KOG4211 Splicing factor hnRNP- 99.8 1.9E-17 4E-22 136.2 16.1 167 4-201 8-179 (510)
47 KOG0113 U1 small nuclear ribon 99.8 5E-17 1.1E-21 125.6 15.6 81 3-83 98-181 (335)
48 KOG4212 RNA-binding protein hn 99.8 1.2E-16 2.5E-21 129.6 17.9 183 5-187 43-281 (608)
49 PLN03120 nucleic acid binding 99.7 1.2E-17 2.6E-22 129.4 10.5 77 6-83 4-80 (260)
50 PF00076 RRM_1: RNA recognitio 99.7 6.3E-18 1.4E-22 108.2 7.5 68 9-76 1-70 (70)
51 KOG1548 Transcription elongati 99.7 9E-17 1.9E-21 126.6 15.1 194 4-203 132-351 (382)
52 TIGR01648 hnRNP-R-Q heterogene 99.7 3.7E-17 8.1E-22 142.1 12.8 136 5-152 232-369 (578)
53 KOG0110 RNA-binding protein (R 99.7 1.5E-16 3.2E-21 136.2 14.8 191 5-202 384-596 (725)
54 TIGR01659 sex-lethal sex-letha 99.7 1.7E-16 3.7E-21 131.3 14.5 81 5-85 192-277 (346)
55 PLN03121 nucleic acid binding 99.7 8.7E-17 1.9E-21 122.6 11.5 79 4-83 3-81 (243)
56 KOG0114 Predicted RNA-binding 99.7 7.1E-17 1.5E-21 105.2 9.0 80 4-83 16-95 (124)
57 KOG0122 Translation initiation 99.7 1.5E-16 3.2E-21 119.8 9.2 80 4-83 187-269 (270)
58 PF14259 RRM_6: RNA recognitio 99.7 3E-16 6.6E-21 100.3 8.1 68 9-76 1-70 (70)
59 KOG0126 Predicted RNA-binding 99.7 1.3E-17 2.9E-22 119.8 0.8 81 4-84 33-116 (219)
60 KOG0120 Splicing factor U2AF, 99.6 5.2E-16 1.1E-20 130.8 9.2 184 4-202 287-490 (500)
61 PLN03134 glycine-rich RNA-bind 99.6 1.3E-14 2.8E-19 105.4 14.6 82 120-205 30-115 (144)
62 KOG0125 Ataxin 2-binding prote 99.6 1.1E-15 2.4E-20 119.7 7.8 79 5-83 95-174 (376)
63 COG0724 RNA-binding proteins ( 99.6 1.3E-14 2.9E-19 118.3 14.5 145 6-162 115-263 (306)
64 KOG0149 Predicted RNA-binding 99.6 1E-15 2.2E-20 114.8 7.0 75 7-82 13-90 (247)
65 smart00362 RRM_2 RNA recogniti 99.6 4.8E-15 1E-19 94.9 9.1 71 8-78 1-72 (72)
66 PLN03213 repressor of silencin 99.6 3.9E-15 8.6E-20 122.7 9.3 78 4-82 8-87 (759)
67 KOG0124 Polypyrimidine tract-b 99.6 1.3E-13 2.8E-18 109.8 17.0 77 7-83 211-290 (544)
68 KOG0130 RNA-binding protein RB 99.6 3.2E-15 7E-20 102.3 6.4 78 6-83 72-152 (170)
69 KOG0415 Predicted peptidyl pro 99.6 1.9E-15 4.1E-20 119.6 5.1 82 4-85 237-321 (479)
70 KOG0113 U1 small nuclear ribon 99.6 4.8E-14 1E-18 109.3 12.7 77 122-202 99-179 (335)
71 KOG1456 Heterogeneous nuclear 99.6 4.4E-13 9.4E-18 107.1 17.9 189 4-195 285-480 (494)
72 KOG0111 Cyclophilin-type pepti 99.6 5.4E-15 1.2E-19 109.7 5.7 82 4-85 8-92 (298)
73 KOG4212 RNA-binding protein hn 99.6 5.6E-13 1.2E-17 108.5 17.4 74 122-200 534-607 (608)
74 KOG1190 Polypyrimidine tract-b 99.6 3.6E-13 7.9E-18 108.7 16.1 189 8-203 152-372 (492)
75 PF13893 RRM_5: RNA recognitio 99.5 5.2E-14 1.1E-18 85.5 8.1 56 23-80 1-56 (56)
76 cd00590 RRM RRM (RNA recogniti 99.5 8.7E-14 1.9E-18 89.5 9.4 72 8-79 1-74 (74)
77 smart00360 RRM RNA recognition 99.5 4.9E-14 1.1E-18 89.8 7.8 68 11-78 1-71 (71)
78 PF00076 RRM_1: RNA recognitio 99.5 6.9E-14 1.5E-18 89.3 8.1 66 127-196 1-69 (70)
79 KOG0130 RNA-binding protein RB 99.5 1.7E-13 3.6E-18 94.0 8.3 80 119-202 67-150 (170)
80 KOG1456 Heterogeneous nuclear 99.5 1.4E-11 3E-16 98.6 19.8 192 4-202 118-361 (494)
81 KOG0108 mRNA cleavage and poly 99.5 1.4E-13 3E-18 115.7 8.9 79 7-85 19-100 (435)
82 KOG0105 Alternative splicing f 99.5 4.6E-13 1E-17 96.9 10.1 78 124-205 6-84 (241)
83 KOG1365 RNA-binding protein Fu 99.5 5.4E-14 1.2E-18 112.5 5.7 189 4-201 159-359 (508)
84 KOG0109 RNA-binding protein LA 99.5 8.1E-14 1.7E-18 107.7 6.5 95 4-103 76-170 (346)
85 KOG0125 Ataxin 2-binding prote 99.5 2.4E-13 5.2E-18 106.8 8.2 77 122-202 94-172 (376)
86 PLN03120 nucleic acid binding 99.4 8.3E-13 1.8E-17 102.7 9.8 74 124-202 4-78 (260)
87 KOG0117 Heterogeneous nuclear 99.4 2.9E-13 6.3E-18 110.5 7.5 76 7-87 260-335 (506)
88 smart00361 RRM_1 RNA recogniti 99.4 1.6E-12 3.4E-17 82.7 7.4 58 20-77 2-69 (70)
89 KOG0114 Predicted RNA-binding 99.4 3.8E-12 8.3E-17 83.3 9.1 80 119-202 13-93 (124)
90 KOG0121 Nuclear cap-binding pr 99.4 1.5E-12 3.2E-17 88.6 7.4 78 122-203 34-115 (153)
91 KOG0122 Translation initiation 99.4 6.8E-12 1.5E-16 94.9 11.2 81 119-203 184-268 (270)
92 PF14259 RRM_6: RNA recognitio 99.4 2.9E-12 6.4E-17 81.7 7.6 66 127-196 1-69 (70)
93 PLN03121 nucleic acid binding 99.4 5.7E-12 1.2E-16 96.5 10.0 75 123-202 4-79 (243)
94 KOG0129 Predicted RNA-binding 99.4 3.6E-11 7.7E-16 100.3 15.1 157 5-181 258-432 (520)
95 KOG0146 RNA-binding protein ET 99.4 1.1E-12 2.4E-17 100.3 5.6 81 3-83 282-365 (371)
96 KOG0132 RNA polymerase II C-te 99.3 2.7E-12 5.8E-17 111.4 8.1 77 4-83 419-495 (894)
97 PLN03213 repressor of silencin 99.3 6.6E-12 1.4E-16 104.0 10.0 76 123-202 9-86 (759)
98 KOG4454 RNA binding protein (R 99.3 1.1E-12 2.3E-17 97.6 4.5 140 4-188 7-151 (267)
99 KOG0112 Large RNA-binding prot 99.3 1.5E-12 3.2E-17 114.7 5.0 158 4-202 370-529 (975)
100 KOG0120 Splicing factor U2AF, 99.3 1.2E-11 2.7E-16 104.7 10.0 179 4-202 173-367 (500)
101 smart00362 RRM_2 RNA recogniti 99.3 2.6E-11 5.6E-16 77.3 8.7 69 126-198 1-71 (72)
102 KOG0116 RasGAP SH3 binding pro 99.2 1.1E-10 2.4E-15 97.7 11.1 78 6-84 288-368 (419)
103 KOG4208 Nucleolar RNA-binding 99.2 4.8E-11 1E-15 88.3 7.8 80 4-83 47-130 (214)
104 KOG4211 Splicing factor hnRNP- 99.2 2.9E-10 6.2E-15 94.4 13.1 182 4-188 101-346 (510)
105 KOG0533 RRM motif-containing p 99.2 6.5E-10 1.4E-14 86.3 13.6 79 6-84 83-163 (243)
106 KOG0415 Predicted peptidyl pro 99.2 5.1E-11 1.1E-15 94.8 7.1 81 118-202 233-317 (479)
107 cd00590 RRM RRM (RNA recogniti 99.2 2.5E-10 5.3E-15 73.1 9.2 70 126-199 1-73 (74)
108 smart00360 RRM RNA recognition 99.2 1.9E-10 4E-15 73.0 8.2 66 129-198 1-70 (71)
109 KOG0131 Splicing factor 3b, su 99.2 4.9E-11 1.1E-15 86.4 5.8 79 120-202 5-87 (203)
110 KOG0153 Predicted RNA-binding 99.2 1.5E-10 3.3E-15 92.0 8.7 77 4-83 226-303 (377)
111 PF13893 RRM_5: RNA recognitio 99.1 1.6E-10 3.5E-15 70.0 6.4 56 141-201 1-56 (56)
112 KOG2193 IGF-II mRNA-binding pr 99.1 1.9E-11 4E-16 99.4 1.5 148 7-200 2-153 (584)
113 KOG4661 Hsp27-ERE-TATA-binding 99.1 3.6E-10 7.7E-15 95.4 8.5 80 5-84 404-486 (940)
114 KOG0126 Predicted RNA-binding 99.1 1.1E-11 2.5E-16 89.5 -0.6 74 125-202 36-113 (219)
115 KOG4660 Protein Mei2, essentia 99.1 1.3E-10 2.9E-15 97.8 5.3 166 4-188 73-238 (549)
116 KOG0149 Predicted RNA-binding 99.1 3.6E-10 7.7E-15 85.4 7.1 58 125-182 13-74 (247)
117 KOG0111 Cyclophilin-type pepti 99.0 1.7E-10 3.7E-15 86.0 4.0 78 124-205 10-91 (298)
118 KOG0108 mRNA cleavage and poly 99.0 8E-10 1.7E-14 93.3 7.4 81 125-209 19-103 (435)
119 KOG0128 RNA-binding protein SA 99.0 4.8E-11 1E-15 104.9 -0.7 132 5-188 666-803 (881)
120 COG0724 RNA-binding proteins ( 99.0 3.3E-09 7.1E-14 86.4 9.5 75 124-202 115-193 (306)
121 PF04059 RRM_2: RNA recognitio 99.0 5.4E-09 1.2E-13 69.6 8.6 77 7-83 2-87 (97)
122 KOG4205 RNA-binding protein mu 99.0 9.2E-10 2E-14 89.0 5.8 82 6-88 97-181 (311)
123 KOG1365 RNA-binding protein Fu 98.9 1.8E-08 3.8E-13 81.4 11.8 158 4-181 58-225 (508)
124 KOG0151 Predicted splicing reg 98.9 2.4E-08 5.2E-13 86.6 11.4 80 4-83 172-257 (877)
125 smart00361 RRM_1 RNA recogniti 98.9 1.4E-08 3.1E-13 64.4 7.3 57 138-198 2-69 (70)
126 KOG4210 Nuclear localization s 98.8 9.3E-09 2E-13 82.9 6.9 172 5-207 87-267 (285)
127 KOG4661 Hsp27-ERE-TATA-binding 98.8 3.5E-08 7.5E-13 83.7 10.5 79 121-203 402-484 (940)
128 KOG4209 Splicing factor RNPS1, 98.8 9.6E-09 2.1E-13 80.1 5.7 79 4-83 99-180 (231)
129 KOG0106 Alternative splicing f 98.8 3.5E-08 7.6E-13 75.1 8.2 70 125-202 2-71 (216)
130 PF11608 Limkain-b1: Limkain b 98.8 6.4E-08 1.4E-12 61.3 7.6 70 7-83 3-77 (90)
131 KOG4206 Spliceosomal protein s 98.8 5.3E-08 1.1E-12 73.5 8.5 75 125-203 10-89 (221)
132 KOG4307 RNA binding protein RB 98.7 1.8E-07 3.9E-12 81.2 10.4 188 5-200 310-510 (944)
133 KOG0226 RNA-binding proteins [ 98.6 8E-08 1.7E-12 73.6 5.5 159 9-200 99-266 (290)
134 KOG1457 RNA binding protein (c 98.6 6E-08 1.3E-12 72.8 4.1 63 7-70 211-273 (284)
135 KOG0132 RNA polymerase II C-te 98.5 3.3E-07 7.2E-12 80.5 7.8 76 124-205 421-496 (894)
136 KOG0533 RRM motif-containing p 98.5 4.4E-07 9.5E-12 70.8 7.7 75 124-202 83-160 (243)
137 PF08777 RRM_3: RNA binding mo 98.5 4.5E-07 9.8E-12 61.9 6.1 70 7-79 2-76 (105)
138 KOG0226 RNA-binding proteins [ 98.5 1.9E-07 4.2E-12 71.5 4.6 78 4-81 188-268 (290)
139 KOG0153 Predicted RNA-binding 98.4 1E-06 2.2E-11 70.6 7.6 79 120-203 224-302 (377)
140 KOG4454 RNA binding protein (R 98.4 2.5E-07 5.4E-12 69.4 2.9 68 121-188 6-75 (267)
141 PF04059 RRM_2: RNA recognitio 98.4 5.9E-06 1.3E-10 55.2 8.9 77 125-201 2-84 (97)
142 KOG4208 Nucleolar RNA-binding 98.4 2.1E-06 4.6E-11 64.0 7.5 66 123-188 48-118 (214)
143 KOG2202 U2 snRNP splicing fact 98.3 5E-07 1.1E-11 69.6 4.0 63 21-83 83-148 (260)
144 KOG0116 RasGAP SH3 binding pro 98.3 1.7E-05 3.7E-10 67.1 13.4 76 123-203 287-366 (419)
145 KOG4660 Protein Mei2, essentia 98.3 7.4E-07 1.6E-11 75.7 5.1 71 122-197 73-143 (549)
146 KOG4676 Splicing factor, argin 98.3 3.4E-08 7.5E-13 79.9 -2.7 63 7-71 152-214 (479)
147 KOG0151 Predicted splicing reg 98.3 1.8E-06 3.8E-11 75.4 7.1 83 115-201 165-254 (877)
148 PF11608 Limkain-b1: Limkain b 98.3 7.1E-06 1.5E-10 52.2 7.8 69 125-203 3-76 (90)
149 KOG1995 Conserved Zn-finger pr 98.3 9.4E-07 2E-11 71.3 4.4 81 4-84 64-155 (351)
150 KOG1548 Transcription elongati 98.3 5.8E-06 1.3E-10 66.3 8.4 76 123-202 133-219 (382)
151 PF14605 Nup35_RRM_2: Nup53/35 98.2 5.4E-06 1.2E-10 49.0 5.1 53 6-62 1-53 (53)
152 KOG3152 TBP-binding protein, a 98.2 1.4E-06 3E-11 67.0 2.8 69 6-74 74-157 (278)
153 KOG4210 Nuclear localization s 98.1 3.3E-06 7.1E-11 68.3 5.1 79 4-83 182-264 (285)
154 PF08777 RRM_3: RNA binding mo 98.1 5.4E-06 1.2E-10 56.7 5.4 59 125-185 2-60 (105)
155 COG5175 MOT2 Transcriptional r 98.1 9.2E-06 2E-10 65.0 6.7 76 7-82 115-202 (480)
156 KOG4307 RNA binding protein RB 98.1 1.8E-05 3.9E-10 69.2 8.2 75 5-79 865-943 (944)
157 KOG4209 Splicing factor RNPS1, 98.0 4.5E-05 9.7E-10 59.8 8.7 76 122-202 99-178 (231)
158 KOG1855 Predicted RNA-binding 98.0 2E-05 4.4E-10 65.1 6.4 73 5-77 230-318 (484)
159 KOG2416 Acinus (induces apopto 98.0 1.1E-05 2.3E-10 69.3 4.7 77 4-83 442-522 (718)
160 KOG2314 Translation initiation 97.9 2.5E-05 5.4E-10 66.7 6.5 75 6-80 58-141 (698)
161 PF05172 Nup35_RRM: Nup53/35/4 97.9 9.2E-05 2E-09 49.8 7.6 76 4-81 4-90 (100)
162 KOG2202 U2 snRNP splicing fact 97.9 6E-05 1.3E-09 58.3 7.2 59 139-201 83-145 (260)
163 PF08952 DUF1866: Domain of un 97.9 9.8E-05 2.1E-09 52.7 7.8 74 4-83 25-107 (146)
164 KOG4849 mRNA cleavage factor I 97.8 1.9E-05 4.1E-10 63.5 3.8 74 7-80 81-159 (498)
165 KOG0115 RNA-binding protein p5 97.7 0.00014 3E-09 56.3 7.1 101 57-199 6-109 (275)
166 KOG0129 Predicted RNA-binding 97.7 0.00015 3.2E-09 61.6 7.5 61 4-64 368-432 (520)
167 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00015 3.2E-09 42.8 5.2 52 125-179 2-53 (53)
168 KOG0112 Large RNA-binding prot 97.5 0.00012 2.7E-09 65.9 5.2 79 3-84 452-532 (975)
169 KOG0128 RNA-binding protein SA 97.5 0.00023 5E-09 64.0 6.3 77 6-82 736-814 (881)
170 KOG1995 Conserved Zn-finger pr 97.5 0.00065 1.4E-08 55.3 7.7 78 121-202 63-152 (351)
171 KOG1996 mRNA splicing factor [ 97.5 0.00041 8.8E-09 54.8 6.3 62 20-81 300-365 (378)
172 KOG2314 Translation initiation 97.4 0.00052 1.1E-08 59.0 7.0 66 123-188 57-131 (698)
173 COG5175 MOT2 Transcriptional r 97.4 0.0007 1.5E-08 54.5 6.8 75 123-201 113-200 (480)
174 KOG2253 U1 snRNP complex, subu 97.3 2.7E-05 5.8E-10 67.9 -2.0 72 4-81 38-109 (668)
175 KOG1855 Predicted RNA-binding 97.3 0.0006 1.3E-08 56.7 5.7 64 122-185 229-309 (484)
176 PF08675 RNA_bind: RNA binding 97.2 0.0021 4.6E-08 41.1 6.7 54 7-66 10-63 (87)
177 KOG3152 TBP-binding protein, a 97.1 0.0003 6.5E-09 54.5 2.5 64 125-188 75-154 (278)
178 PF10309 DUF2414: Protein of u 97.1 0.005 1.1E-07 37.3 7.1 54 125-182 6-62 (62)
179 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0024 5.2E-08 43.0 5.7 62 125-188 7-79 (100)
180 KOG1996 mRNA splicing factor [ 97.0 0.0029 6.4E-08 50.1 6.6 61 138-202 300-365 (378)
181 PF07576 BRAP2: BRCA1-associat 97.0 0.0099 2.1E-07 40.9 8.4 66 6-71 13-80 (110)
182 KOG2591 c-Mpl binding protein, 96.8 0.006 1.3E-07 52.6 7.9 91 54-188 146-245 (684)
183 PF10309 DUF2414: Protein of u 96.8 0.0091 2E-07 36.2 6.5 54 7-65 6-62 (62)
184 PF15023 DUF4523: Protein of u 96.8 0.013 2.7E-07 41.6 7.8 74 4-82 84-161 (166)
185 KOG2068 MOT2 transcription fac 96.6 0.00094 2E-08 54.0 1.4 77 7-83 78-163 (327)
186 PF04847 Calcipressin: Calcipr 96.6 0.0097 2.1E-07 45.0 6.7 63 18-83 7-71 (184)
187 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.002 4.4E-08 48.5 3.0 79 4-82 5-97 (176)
188 KOG0115 RNA-binding protein p5 96.6 0.0026 5.5E-08 49.5 3.4 75 7-81 32-112 (275)
189 KOG2416 Acinus (induces apopto 96.5 0.0015 3.3E-08 56.6 2.3 78 121-201 441-519 (718)
190 PF03880 DbpA: DbpA RNA bindin 96.5 0.02 4.3E-07 36.4 6.9 58 17-80 12-74 (74)
191 KOG0835 Cyclin L [General func 96.5 0.0052 1.1E-07 49.6 4.9 17 44-60 172-188 (367)
192 PF08952 DUF1866: Domain of un 96.5 0.015 3.3E-07 41.7 6.7 52 140-200 52-103 (146)
193 KOG4285 Mitotic phosphoprotein 96.3 0.015 3.3E-07 46.4 6.3 72 7-83 198-270 (350)
194 KOG2591 c-Mpl binding protein, 96.0 0.013 2.8E-07 50.6 5.1 69 5-77 174-246 (684)
195 KOG2135 Proteins containing th 95.9 0.0046 1E-07 52.3 2.1 76 4-83 370-446 (526)
196 KOG0804 Cytoplasmic Zn-finger 95.9 0.028 6.1E-07 47.5 6.5 67 6-72 74-142 (493)
197 PF08675 RNA_bind: RNA binding 95.9 0.044 9.6E-07 35.2 5.8 55 125-184 10-64 (87)
198 KOG2193 IGF-II mRNA-binding pr 95.8 0.0011 2.4E-08 55.1 -1.9 79 5-83 79-157 (584)
199 PF07576 BRAP2: BRCA1-associat 95.7 0.16 3.5E-06 34.9 8.6 64 125-188 14-80 (110)
200 KOG0835 Cyclin L [General func 95.3 0.045 9.7E-07 44.4 5.5 13 134-146 211-223 (367)
201 PF11767 SET_assoc: Histone ly 94.6 0.25 5.3E-06 30.5 6.3 55 17-77 11-65 (66)
202 PF07292 NID: Nmi/IFP 35 domai 94.3 0.54 1.2E-05 30.8 7.6 70 48-144 1-72 (88)
203 KOG0804 Cytoplasmic Zn-finger 94.2 0.28 6E-06 41.7 7.6 65 124-188 74-141 (493)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 94.2 0.092 2E-06 39.6 4.5 67 123-189 6-82 (176)
205 KOG4574 RNA-binding protein (c 94.1 0.036 7.7E-07 50.5 2.4 72 10-84 302-375 (1007)
206 KOG4849 mRNA cleavage factor I 93.7 0.15 3.2E-06 41.8 5.1 66 123-188 79-150 (498)
207 KOG2318 Uncharacterized conser 93.1 0.44 9.6E-06 41.9 7.2 79 3-81 171-306 (650)
208 PF15023 DUF4523: Protein of u 92.9 0.31 6.7E-06 34.8 5.0 61 123-186 85-149 (166)
209 KOG2068 MOT2 transcription fac 92.6 0.06 1.3E-06 43.9 1.3 65 124-188 77-151 (327)
210 KOG2253 U1 snRNP complex, subu 92.1 0.23 4.9E-06 44.3 4.3 66 118-188 34-99 (668)
211 PF14111 DUF4283: Domain of un 91.3 0.29 6.3E-06 35.8 3.8 120 9-160 18-141 (153)
212 PF04847 Calcipressin: Calcipr 91.3 0.98 2.1E-05 34.3 6.5 60 137-202 8-69 (184)
213 KOG4285 Mitotic phosphoprotein 91.2 0.47 1E-05 38.3 4.9 58 127-188 200-257 (350)
214 KOG2135 Proteins containing th 91.0 0.26 5.6E-06 42.2 3.4 73 124-203 372-445 (526)
215 KOG4574 RNA-binding protein (c 90.2 0.23 4.9E-06 45.6 2.6 73 126-202 300-372 (1007)
216 KOG4019 Calcineurin-mediated s 90.1 0.3 6.5E-06 36.3 2.7 77 4-83 8-90 (193)
217 PF11767 SET_assoc: Histone ly 90.0 1.9 4.1E-05 26.6 5.8 50 134-188 10-59 (66)
218 PF10567 Nab6_mRNP_bdg: RNA-re 88.4 1.1 2.3E-05 36.2 4.8 171 5-185 14-214 (309)
219 KOG4410 5-formyltetrahydrofola 87.0 2 4.2E-05 34.5 5.5 46 7-55 331-377 (396)
220 PF03468 XS: XS domain; Inter 86.4 0.7 1.5E-05 32.2 2.5 59 8-67 10-78 (116)
221 KOG2888 Putative RNA binding p 86.2 0.38 8.1E-06 39.2 1.2 7 141-147 229-235 (453)
222 PF03880 DbpA: DbpA RNA bindin 85.2 3.7 8E-05 25.9 5.3 59 133-200 10-73 (74)
223 KOG2891 Surface glycoprotein [ 84.2 0.48 1E-05 37.7 1.0 67 4-70 147-247 (445)
224 KOG4483 Uncharacterized conser 83.8 3 6.5E-05 35.2 5.4 57 4-63 389-445 (528)
225 PRK14548 50S ribosomal protein 82.1 5.9 0.00013 25.8 5.3 57 9-65 23-81 (84)
226 KOG4246 Predicted DNA-binding 81.2 0.76 1.7E-05 42.3 1.2 8 125-132 146-153 (1194)
227 TIGR03636 L23_arch archaeal ri 80.9 7.6 0.00016 24.8 5.4 55 9-63 16-72 (77)
228 KOG3580 Tight junction protein 79.4 18 0.0004 32.6 8.8 38 123-160 60-98 (1027)
229 PF15513 DUF4651: Domain of un 78.8 5.1 0.00011 24.3 3.8 18 21-38 9-26 (62)
230 KOG1295 Nonsense-mediated deca 76.2 3.1 6.8E-05 34.9 3.2 65 6-70 7-77 (376)
231 PF14893 PNMA: PNMA 75.8 3.5 7.5E-05 34.5 3.5 55 1-55 13-72 (331)
232 PF09707 Cas_Cas2CT1978: CRISP 73.8 9.3 0.0002 25.0 4.4 49 4-52 23-71 (86)
233 KOG4483 Uncharacterized conser 71.5 13 0.00027 31.7 5.6 55 124-181 391-446 (528)
234 PRK14548 50S ribosomal protein 70.4 27 0.00058 22.8 6.6 57 126-182 22-81 (84)
235 KOG2295 C2H2 Zn-finger protein 69.8 0.57 1.2E-05 41.0 -2.4 67 6-72 231-300 (648)
236 KOG4410 5-formyltetrahydrofola 69.7 17 0.00037 29.4 5.7 49 124-173 330-378 (396)
237 cd04908 ACT_Bt0572_1 N-termina 68.4 24 0.00051 21.4 6.3 44 19-63 14-58 (66)
238 PRK11634 ATP-dependent RNA hel 68.0 29 0.00063 32.1 7.8 62 16-83 497-563 (629)
239 cd04889 ACT_PDH-BS-like C-term 66.8 23 0.00049 20.5 5.4 42 21-62 13-55 (56)
240 KOG2812 Uncharacterized conser 65.8 8.6 0.00019 32.0 3.5 8 258-265 87-94 (426)
241 KOG4008 rRNA processing protei 64.4 5.8 0.00013 31.0 2.3 35 4-38 38-72 (261)
242 TIGR03636 L23_arch archaeal ri 63.7 36 0.00078 21.7 6.6 57 126-182 15-74 (77)
243 KOG2318 Uncharacterized conser 63.5 33 0.00071 30.8 6.8 67 122-188 172-294 (650)
244 PF02714 DUF221: Domain of unk 62.9 16 0.00036 30.4 5.0 34 48-83 1-34 (325)
245 KOG2146 Splicing coactivator S 59.7 26 0.00057 28.4 5.1 29 50-78 57-86 (354)
246 PF03468 XS: XS domain; Inter 59.2 23 0.0005 24.6 4.4 48 125-173 9-67 (116)
247 PTZ00191 60S ribosomal protein 59.0 36 0.00078 24.7 5.3 54 10-63 85-140 (145)
248 PF12091 DUF3567: Protein of u 58.8 11 0.00023 24.5 2.4 17 134-150 60-76 (85)
249 KOG2891 Surface glycoprotein [ 58.8 7.6 0.00017 31.1 2.1 77 125-201 150-265 (445)
250 PRK11558 putative ssRNA endonu 58.7 22 0.00048 23.8 3.9 52 4-55 25-76 (97)
251 PF07292 NID: Nmi/IFP 35 domai 57.7 6.5 0.00014 25.8 1.3 24 4-27 50-73 (88)
252 KOG4213 RNA-binding protein La 57.6 16 0.00036 27.4 3.5 50 18-70 118-174 (205)
253 KOG4246 Predicted DNA-binding 57.2 4.9 0.00011 37.4 0.9 6 134-139 197-202 (1194)
254 PF03439 Spt5-NGN: Early trans 56.9 28 0.00061 22.5 4.2 29 41-69 40-68 (84)
255 KOG3869 Uncharacterized conser 55.1 4.7 0.0001 34.3 0.4 8 257-264 293-300 (450)
256 COG0150 PurM Phosphoribosylami 54.7 3.2 6.9E-05 34.5 -0.6 48 20-68 275-322 (345)
257 PF14026 DUF4242: Protein of u 53.1 57 0.0012 20.7 7.5 62 8-70 2-71 (77)
258 KOG4365 Uncharacterized conser 51.4 2.5 5.5E-05 36.1 -1.7 75 6-81 3-80 (572)
259 KOG1295 Nonsense-mediated deca 50.8 19 0.0004 30.5 3.2 64 125-188 8-78 (376)
260 TIGR01873 cas_CT1978 CRISPR-as 50.3 34 0.00074 22.4 3.7 51 4-54 23-74 (87)
261 PF09902 DUF2129: Uncharacteri 50.1 44 0.00096 21.0 4.1 43 21-70 12-54 (71)
262 PF11823 DUF3343: Protein of u 46.9 30 0.00065 21.6 3.1 27 46-72 2-28 (73)
263 PTZ00191 60S ribosomal protein 46.8 1.1E+02 0.0024 22.2 6.5 57 125-181 82-141 (145)
264 PF00403 HMA: Heavy-metal-asso 46.1 62 0.0013 19.1 6.2 54 8-64 1-58 (62)
265 PF11411 DNA_ligase_IV: DNA li 45.3 18 0.00038 19.3 1.5 17 16-32 19-35 (36)
266 PF10567 Nab6_mRNP_bdg: RNA-re 43.9 74 0.0016 26.1 5.4 54 124-177 15-79 (309)
267 PF01071 GARS_A: Phosphoribosy 42.6 77 0.0017 24.4 5.2 48 18-66 24-71 (194)
268 PRK02302 hypothetical protein; 42.5 62 0.0014 21.3 4.0 37 27-69 23-59 (89)
269 PF08544 GHMP_kinases_C: GHMP 42.1 87 0.0019 19.7 6.1 43 139-182 37-79 (85)
270 PRK02886 hypothetical protein; 41.7 65 0.0014 21.1 4.0 38 27-70 21-58 (87)
271 COG0445 GidA Flavin-dependent 41.6 1.2E+02 0.0025 27.7 6.7 38 122-159 299-336 (621)
272 PF07530 PRE_C2HC: Associated 40.8 78 0.0017 19.6 4.2 60 21-83 2-65 (68)
273 KOG0156 Cytochrome P450 CYP2 s 40.2 59 0.0013 29.1 4.9 59 10-75 36-97 (489)
274 COG0018 ArgS Arginyl-tRNA synt 40.1 2.6E+02 0.0056 25.8 8.9 99 19-160 59-166 (577)
275 smart00596 PRE_C2HC PRE_C2HC d 39.7 92 0.002 19.4 4.2 58 139-203 2-64 (69)
276 PF15063 TC1: Thyroid cancer p 39.0 18 0.0004 22.8 1.1 24 10-33 29-52 (79)
277 PF08734 GYD: GYD domain; Int 38.6 1.1E+02 0.0025 20.0 6.0 46 138-183 22-68 (91)
278 KOG2295 C2H2 Zn-finger protein 37.7 7.1 0.00015 34.6 -1.1 66 123-188 230-299 (648)
279 PF08442 ATP-grasp_2: ATP-gras 37.5 78 0.0017 24.5 4.6 54 18-71 25-81 (202)
280 PRK11230 glycolate oxidase sub 37.1 1.2E+02 0.0026 27.3 6.4 48 19-66 202-255 (499)
281 COG0030 KsgA Dimethyladenosine 37.0 53 0.0011 26.6 3.7 30 7-36 96-125 (259)
282 PRK10629 EnvZ/OmpR regulon mod 36.5 1.6E+02 0.0034 21.0 7.6 72 5-81 34-109 (127)
283 KOG4019 Calcineurin-mediated s 36.0 29 0.00063 26.2 1.9 62 125-188 11-77 (193)
284 CHL00123 rps6 ribosomal protei 33.6 1.4E+02 0.0031 19.9 4.9 50 14-63 14-80 (97)
285 PRK15464 cold shock-like prote 33.4 36 0.00079 21.2 1.9 19 31-54 7-25 (70)
286 PF08156 NOP5NT: NOP5NT (NUC12 33.1 17 0.00036 22.5 0.3 39 21-66 27-65 (67)
287 PF02714 DUF221: Domain of unk 32.2 60 0.0013 27.0 3.6 22 165-186 1-22 (325)
288 PF14111 DUF4283: Domain of un 32.1 27 0.00059 25.2 1.4 34 8-41 106-140 (153)
289 PF02829 3H: 3H domain; Inter 31.9 1.6E+02 0.0035 19.8 5.1 51 17-67 8-58 (98)
290 PF11061 DUF2862: Protein of u 31.8 1.2E+02 0.0027 18.6 3.8 39 12-54 10-51 (64)
291 cd04909 ACT_PDH-BS C-terminal 31.0 1.2E+02 0.0027 18.1 5.4 47 19-65 14-62 (69)
292 PRK08559 nusG transcription an 30.8 2.1E+02 0.0046 20.9 5.9 33 33-67 36-68 (153)
293 cd04879 ACT_3PGDH-like ACT_3PG 30.6 1.2E+02 0.0026 17.8 4.6 37 18-54 11-49 (71)
294 PF00398 RrnaAD: Ribosomal RNA 30.2 56 0.0012 26.4 3.0 23 6-28 97-119 (262)
295 PF15407 Spo7_2_N: Sporulation 30.1 19 0.0004 22.3 0.1 24 4-27 25-48 (67)
296 PF06014 DUF910: Bacterial pro 30.0 33 0.00071 20.8 1.2 17 20-36 4-20 (62)
297 COG3254 Uncharacterized conser 30.0 1.8E+02 0.004 19.8 5.3 42 21-63 27-69 (105)
298 COG0150 PurM Phosphoribosylami 29.8 21 0.00046 29.8 0.5 48 138-185 275-322 (345)
299 COG5227 SMT3 Ubiquitin-like pr 29.7 1.4E+02 0.0031 19.6 4.1 64 3-67 31-100 (103)
300 PRK09631 DNA topoisomerase IV 29.7 4.4E+02 0.0096 24.7 8.7 59 6-65 220-282 (635)
301 cd04882 ACT_Bt0572_2 C-termina 29.5 1.2E+02 0.0027 17.6 5.1 43 21-63 14-58 (65)
302 PRK15463 cold shock-like prote 29.5 47 0.001 20.7 1.9 19 31-54 7-25 (70)
303 PRK09937 stationary phase/star 29.2 50 0.0011 20.9 2.0 9 45-53 13-21 (74)
304 TIGR02381 cspD cold shock doma 29.1 51 0.0011 20.3 2.0 19 31-54 4-22 (68)
305 PRK14998 cold shock-like prote 29.0 51 0.0011 20.8 2.0 19 31-54 4-22 (73)
306 PHA01632 hypothetical protein 29.0 74 0.0016 18.7 2.4 22 126-147 18-39 (64)
307 PRK11901 hypothetical protein; 29.0 1.7E+02 0.0037 24.5 5.4 60 5-68 244-307 (327)
308 PRK05738 rplW 50S ribosomal pr 28.6 1.8E+02 0.0039 19.3 5.0 30 9-38 22-53 (92)
309 PRK10943 cold shock-like prote 28.5 48 0.001 20.5 1.8 10 45-54 15-24 (69)
310 KOG2187 tRNA uracil-5-methyltr 28.5 51 0.0011 29.4 2.5 40 44-83 62-101 (534)
311 PRK09507 cspE cold shock prote 28.4 50 0.0011 20.5 1.9 10 45-54 15-24 (69)
312 PF12829 Mhr1: Transcriptional 28.1 64 0.0014 21.4 2.4 52 14-66 20-72 (91)
313 PF00313 CSD: 'Cold-shock' DNA 28.0 61 0.0013 19.6 2.2 11 45-55 12-22 (66)
314 KOG4008 rRNA processing protei 27.9 42 0.00091 26.5 1.7 31 125-155 41-71 (261)
315 cd04883 ACT_AcuB C-terminal AC 27.5 1.5E+02 0.0032 17.9 6.1 45 19-63 14-62 (72)
316 COG5193 LHP1 La protein, small 27.5 33 0.00072 29.3 1.2 57 7-63 175-244 (438)
317 PF10915 DUF2709: Protein of u 27.5 2.9E+02 0.0062 21.2 6.0 33 50-83 47-79 (238)
318 PF05189 RTC_insert: RNA 3'-te 27.2 1.7E+02 0.0036 19.6 4.5 46 8-53 12-65 (103)
319 smart00195 DSPc Dual specifici 27.1 2.2E+02 0.0048 19.9 5.7 71 7-79 6-85 (138)
320 TIGR02542 B_forsyth_147 Bacter 26.7 2.2E+02 0.0049 19.7 5.8 23 14-38 11-33 (145)
321 COG4747 ACT domain-containing 26.7 2.1E+02 0.0045 20.1 4.6 48 22-70 85-133 (142)
322 PRK11901 hypothetical protein; 26.3 1.5E+02 0.0032 24.9 4.6 61 122-186 243-308 (327)
323 PRK09890 cold shock protein Cs 25.7 59 0.0013 20.2 1.8 19 30-53 6-24 (70)
324 TIGR00387 glcD glycolate oxida 24.6 1.9E+02 0.004 25.2 5.4 49 17-65 143-197 (413)
325 KOG3580 Tight junction protein 24.5 1.4E+02 0.003 27.4 4.4 8 168-175 70-77 (1027)
326 KOG0862 Synaptobrevin/VAMP-lik 24.5 60 0.0013 25.3 2.0 13 43-55 107-119 (216)
327 cd00027 BRCT Breast Cancer Sup 24.4 1.1E+02 0.0023 17.8 3.0 26 7-32 2-27 (72)
328 PRK10354 RNA chaperone/anti-te 24.3 64 0.0014 20.0 1.8 9 45-53 16-24 (70)
329 PF00276 Ribosomal_L23: Riboso 24.0 1.6E+02 0.0035 19.4 3.8 30 9-38 22-53 (91)
330 KOG1999 RNA polymerase II tran 23.8 2.3E+02 0.0049 27.7 5.8 33 39-71 204-236 (1024)
331 TIGR00755 ksgA dimethyladenosi 23.3 1E+02 0.0022 24.6 3.3 24 8-31 96-119 (253)
332 PF01842 ACT: ACT domain; Int 22.9 1.7E+02 0.0036 17.0 4.6 46 20-65 14-61 (66)
333 KOG3424 40S ribosomal protein 22.9 2.1E+02 0.0045 20.0 4.1 44 16-60 33-84 (132)
334 PF09383 NIL: NIL domain; Int 22.5 2E+02 0.0044 17.8 4.0 51 16-66 12-67 (76)
335 KOG1205 Predicted dehydrogenas 22.5 1.3E+02 0.0027 24.8 3.6 44 18-63 73-120 (282)
336 PF03389 MobA_MobL: MobA/MobL 22.4 1.8E+02 0.0039 22.8 4.4 45 10-54 71-123 (216)
337 cd04458 CSP_CDS Cold-Shock Pro 22.4 83 0.0018 18.9 2.1 10 45-54 12-21 (65)
338 PRK00274 ksgA 16S ribosomal RN 22.2 1.1E+02 0.0023 24.9 3.2 22 8-29 107-128 (272)
339 PF08206 OB_RNB: Ribonuclease 22.0 71 0.0015 18.9 1.6 11 44-54 7-17 (58)
340 KOG1888 Putative phosphoinosit 21.7 2E+02 0.0043 27.4 5.0 69 8-80 311-384 (868)
341 PF01782 RimM: RimM N-terminal 21.3 1.9E+02 0.0041 18.3 3.7 23 45-68 54-76 (84)
342 PLN02805 D-lactate dehydrogena 21.3 1.9E+02 0.004 26.5 4.8 48 18-65 278-331 (555)
343 PTZ00338 dimethyladenosine tra 21.2 1.1E+02 0.0023 25.3 3.1 22 8-29 103-124 (294)
344 KOG0291 WD40-repeat-containing 21.0 23 0.00051 32.8 -0.8 21 44-64 380-400 (893)
345 COG0090 RplB Ribosomal protein 20.9 1.1E+02 0.0025 24.6 3.0 30 120-149 123-152 (275)
346 COG0045 SucC Succinyl-CoA synt 20.7 5.4E+02 0.012 22.3 7.0 65 18-82 26-97 (387)
347 PRK06737 acetolactate synthase 20.1 2.5E+02 0.0054 17.9 6.0 59 8-68 6-67 (76)
348 COG0002 ArgC Acetylglutamate s 20.1 2.6E+02 0.0057 23.7 5.0 44 13-56 252-304 (349)
349 PF12993 DUF3877: Domain of un 20.1 1.9E+02 0.0042 21.7 3.8 17 16-32 107-123 (175)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=2.7e-33 Score=230.62 Aligned_cols=163 Identities=23% Similarity=0.328 Sum_probs=142.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||+++|+++|+++|+.||+|++|+|+. ++.++|||||+|.++++|++||+.||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4568999999999999999999999999999999954 5678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... .....+|||.|||..+++++|+++|++||.|..+.++.+.
T Consensus 185 ~p~~~-----------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 185 RPGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred ccccc-----------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 64310 1123589999999999999999999999999999999876
Q ss_pred CC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ ++|||+|.+.++|++|++.||+..+.+. ...|.|..++.
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~--~~~l~V~~a~~ 274 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGG--SQPLTVRLAEE 274 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECCc
Confidence 43 5999999999999999999999988621 36777777663
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.4e-31 Score=190.44 Aligned_cols=194 Identities=66% Similarity=1.109 Sum_probs=162.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|+++.+++|||+|||.++-+.+|+.||-+||.|.+|.|+....+..||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78899999999999999999999999999999999999887778899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
+... ......+.+.+++.+ +.+.+....++.......|.|.+||+...|+||++++.+.|.|+...+.++.
T Consensus 81 rggr----~s~~~~G~y~gggrg-----Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg 151 (241)
T KOG0105|consen 81 RGGR----SSSDRRGSYSGGGRG-----GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG 151 (241)
T ss_pred cCCC----cccccccccCCCCCC-----CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc
Confidence 8653 222223333333322 2222233446677788999999999999999999999999999999999885
Q ss_pred CCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCCCCC
Q 024267 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 161 ~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
++.|+|...++++.|+.+|+...+........|.|.......+
T Consensus 152 ---~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~~ 194 (241)
T KOG0105|consen 152 ---VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRDQ 194 (241)
T ss_pred ---ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCcc
Confidence 8999999999999999999999888655667777776654433
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.5e-31 Score=229.87 Aligned_cols=174 Identities=20% Similarity=0.338 Sum_probs=145.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||+.+++++|+++|..||.|.+|.|.. +++++|||||+|.+.++|..|++.|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3468999999999999999999999999999999954 5789999999999999999999999999999999999854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
......... ............+|||+||+..+++++|+++|+.||.|..+.+..+.
T Consensus 185 ~~~p~a~~~------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 185 SNMPQAQPI------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred ccccccccc------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence 332110000 00001111234689999999999999999999999999999999875
Q ss_pred CC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCCCC
Q 024267 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+ |||||+|.+.++|.+|+..||+..+. |..|+|..+..++
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elg----Gr~LrV~kAi~pP 285 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTPP 285 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC----CeEEEEEecCCCc
Confidence 43 69999999999999999999999998 9999998877543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=2.6e-30 Score=217.67 Aligned_cols=163 Identities=22% Similarity=0.341 Sum_probs=141.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.++|||+|||..+++++|+++|+.||+|.+|.|+. ++.++|||||+|.++++|.+||+.|||..|.|+.|.|.++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 4578999999999999999999999999999999964 5678999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... .....+|||+|||..+++++|.++|..||.|..+.++.+.
T Consensus 81 ~~~~~-----------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 125 (352)
T TIGR01661 81 RPSSD-----------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN 125 (352)
T ss_pred ccccc-----------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence 65411 1123689999999999999999999999999999888764
Q ss_pred C----CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
. .|||||+|.+.++|+.|++.|||..+.+. ...+.+.++..
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~--~~~i~v~~a~~ 170 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC--TEPITVKFANN 170 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECCC
Confidence 3 36999999999999999999999987622 34567776653
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=8.7e-30 Score=221.41 Aligned_cols=172 Identities=21% Similarity=0.307 Sum_probs=145.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|.++|++||.|.+|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4678999999999999999999999999999999965 46789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.............. ........+|||+|||..+++++|+++|+.||.|..+.++.+.
T Consensus 166 ~~~~~~~~~~~~~~-----------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 166 QAEKNRAAKAATHQ-----------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred chhhhhhhhccccc-----------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 54322211100000 0001125799999999999999999999999999999999876
Q ss_pred CC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ |||||+|.+.++|..|++.|+|..+. ++.|.|.++..
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~----g~~i~v~~a~~ 265 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELA----GRPIKVGYAQD 265 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEEC----CEEEEEEEccC
Confidence 54 69999999999999999999999988 89999999763
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.5e-28 Score=206.96 Aligned_cols=196 Identities=21% Similarity=0.295 Sum_probs=144.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--eeEEEEe
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
..++|||+|||..+++++|.++|..||.|..+.+.. ++.++|||||+|.+.++|..|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 457899999999999999999999999999999855 35789999999999999999999999999877 6788888
Q ss_pred cCCCCCCCCCC-CC----------CCCCCCC----CC--CC-------CCC------------------------CCCCC
Q 024267 80 AHGGSGRGPSS-SD----------RRGGYGG----GG--AG-------GAG------------------------GAGAG 111 (270)
Q Consensus 80 ~~~~~~~~~~~-~~----------~~~~~~~----~~--~~-------~~~------------------------~~~~~ 111 (270)
+.......... .. ....... .. .. ... .....
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 86543111000 00 0000000 00 00 000 00000
Q ss_pred --------CCCC-CCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHH
Q 024267 112 --------AGAG-RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYA 178 (270)
Q Consensus 112 --------~~~~-~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a 178 (270)
...+ ........+.+|||+|||..+++++|.++|++||.|..++++.+.. .|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0000 0001123345799999999999999999999999999999998863 36999999999999999
Q ss_pred HHHcCCccccCcccccceeeecCCCC
Q 024267 179 IRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 179 ~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
+..|||..+. ++.|.|.+....
T Consensus 328 i~~lnG~~~~----gr~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGYTLG----NRVLQVSFKTNK 349 (352)
T ss_pred HHHhCCCEEC----CeEEEEEEccCC
Confidence 9999999998 999999987643
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=9.6e-29 Score=214.64 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=139.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc--CCcccCCeeEEEEecCC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~~~~~ 82 (270)
|+++|||+|||..+++++|.++|+.||.|..|.++.+ ++||||+|.++++|..|+..| ++..|.|++|.|+++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 6899999999999999999999999999999999753 789999999999999999864 77999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 024267 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
........ ... .........+|+|.||+..+++++|.++|+.||.|..+.++.+...
T Consensus 78 ~~~~~~~~----~~~-------------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~ 134 (481)
T TIGR01649 78 QEIKRDGN----SDF-------------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV 134 (481)
T ss_pred cccccCCC----Ccc-------------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc
Confidence 42111100 000 0001112357999999999999999999999999999999887766
Q ss_pred cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
++|||+|.+.++|.+|++.|||..+.+. .+.++|.+++
T Consensus 135 ~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~l~v~~sk 172 (481)
T TIGR01649 135 FQALVEFESVNSAQHAKAALNGADIYNG--CCTLKIEYAK 172 (481)
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCC--ceEEEEEEec
Confidence 7999999999999999999999998631 3467777665
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=6.4e-28 Score=209.49 Aligned_cols=196 Identities=17% Similarity=0.197 Sum_probs=142.0
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+||++ .+|+++|+++|+.||.|..|+++.+ .+|||||+|.+.++|..|+..|||..|.|++|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4778999999998 6999999999999999999999765 369999999999999999999999999999999999876
Q ss_pred CCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCC--eeEEEEe
Q 024267 83 GSGRGPSSS---DRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVS 157 (270)
Q Consensus 83 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--v~~~~~~ 157 (270)
......... .....+.............. ..........+..+|||.|||..+++++|+++|+.||. |..+++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~-~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~ 429 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNHRFKKP-GSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFF 429 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccccCCCc-ccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence 432111100 00000000000000000000 00011111245679999999999999999999999998 7778776
Q ss_pred eCC--CCcEEEEEecChhhHHHHHHHcCCccccCcc--cccceeeecCC
Q 024267 158 RDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW--ARGRITVKRYD 202 (270)
Q Consensus 158 ~~~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~--~~~~i~v~~~~ 202 (270)
... ..++|||+|.+.++|.+|+..|||..+.+.. ..-.++|.+++
T Consensus 430 ~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 430 PKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred cCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 543 2369999999999999999999999998211 11147777764
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=8.1e-29 Score=187.69 Aligned_cols=170 Identities=20% Similarity=0.279 Sum_probs=144.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.-|||+.|.+.++-++|++.|.+||+|.+++|+. +++++||+||-|.+.++|+.||..|||..|+++.|+..|+.-+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 3599999999999999999999999999999955 6799999999999999999999999999999999999999866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc
Q 024267 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g 163 (270)
....... .......+......+++||++|++..+++++|++.|+.||.|..|.+.++. |
T Consensus 143 p~e~n~~-------------------~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--G 201 (321)
T KOG0148|consen 143 PSEMNGK-------------------PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--G 201 (321)
T ss_pred ccccCCC-------------------CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--c
Confidence 3111000 011122334455677999999999999999999999999999999999987 6
Q ss_pred EEEEEecChhhHHHHHHHcCCccccCcccccceeeecC
Q 024267 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 164 ~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
|+||.|++.|.|..||..||+.++. +..++-.+.
T Consensus 202 YaFVrF~tkEaAahAIv~mNntei~----G~~VkCsWG 235 (321)
T KOG0148|consen 202 YAFVRFETKEAAAHAIVQMNNTEIG----GQLVRCSWG 235 (321)
T ss_pred eEEEEecchhhHHHHHHHhcCceeC----ceEEEEecc
Confidence 9999999999999999999999998 555554443
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=3e-28 Score=216.46 Aligned_cols=158 Identities=27% Similarity=0.452 Sum_probs=138.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCCC
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+|||+|||+++|+++|.++|+.||.|.+|.|.. ++.++|||||+|.+.++|++|++.||+..|.|++|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999955 46788999999999999999999999999999999999975331
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--
Q 024267 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-- 162 (270)
.. ......+|||+|||.++++++|.++|+.||.|..|++..+..+
T Consensus 82 ~~---------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~s 128 (562)
T TIGR01628 82 SL---------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKS 128 (562)
T ss_pred cc---------------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCc
Confidence 10 0011257999999999999999999999999999999887543
Q ss_pred -cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 163 -TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 -g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|||||+|.+.++|.+|+++++|..+. ++.+.+....
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~~----~~~i~v~~~~ 165 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLLN----DKEVYVGRFI 165 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEec----CceEEEeccc
Confidence 79999999999999999999999988 7888776544
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=9.8e-28 Score=207.42 Aligned_cols=191 Identities=22% Similarity=0.305 Sum_probs=140.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccC-CeeEEEEecC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
..++|||+|||.++++++|.++|++||.|.+|+|+. ++.++|||||+|.+.++|++||+.||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 358999999999999999999999999999999965 4789999999999999999999999998885 7877776553
Q ss_pred CCCCC-----CCCCC-----C---CCC-------CCCC----CCCCCCC-------------------CC----CC----
Q 024267 82 GGSGR-----GPSSS-----D---RRG-------GYGG----GGAGGAG-------------------GA----GA---- 110 (270)
Q Consensus 82 ~~~~~-----~~~~~-----~---~~~-------~~~~----~~~~~~~-------------------~~----~~---- 110 (270)
..... ..... . ... -+.. ....+.+ +. +.
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 21100 00000 0 000 0000 0000000 00 00
Q ss_pred ---CCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCc
Q 024267 111 ---GAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 111 ---~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 185 (270)
...............+|||+||+..+++++|+++|+.| |.|..|.++.+ ||||+|++.++|++|++.|||.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~ 292 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGK 292 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCC
Confidence 00000001112335689999999999999999999999 99999988764 9999999999999999999999
Q ss_pred cccCcccccceeeecCCC
Q 024267 186 EFRNPWARGRITVKRYDR 203 (270)
Q Consensus 186 ~~~~~~~~~~i~v~~~~~ 203 (270)
.|. ++.|.|.+++.
T Consensus 293 ~i~----Gr~I~V~~Akp 306 (578)
T TIGR01648 293 ELE----GSEIEVTLAKP 306 (578)
T ss_pred EEC----CEEEEEEEccC
Confidence 998 99999998864
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=7.1e-27 Score=205.87 Aligned_cols=185 Identities=19% Similarity=0.296 Sum_probs=136.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc------------cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKY------------GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~------------G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
...++|||+|||+.+|+++|.++|.+| +.|..+.+ ...+|||||+|.+.++|..||. |+|+.|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 567899999999999999999999975 23444444 3458999999999999999996 9999999
Q ss_pred CeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCe
Q 024267 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (270)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v 151 (270)
|..|.|.................. .. ........ ..............+|||+|||..+++++|+++|+.||.|
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~-~~--~~~~~~~~---~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQ-KN--PDDNAKNV---EKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CceeEecCccccCCccccCCCCCC-CC--Cccccccc---ccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 999999765543211100000000 00 00000000 0000111122345799999999999999999999999999
Q ss_pred eEEEEeeCCC----CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 152 CFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+.++.+.. .|||||+|.+.++|..|++.|+|..+. +..|.|..+.
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~----~~~l~v~~a~ 373 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG----DNKLHVQRAC 373 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEECc
Confidence 9999887653 369999999999999999999999998 8889888875
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=1.9e-27 Score=211.40 Aligned_cols=178 Identities=22% Similarity=0.361 Sum_probs=146.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCcccC----CeeEEEE
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRVE 78 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l~v~ 78 (270)
..++|||+|||.++|+++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|++.|+|..|. |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 4578999999999999999999999999999999654 577899999999999999999999999999 9999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEee
Q 024267 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 158 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 158 (270)
++.....+........... ...........+|||+||+..+++++|+++|+.||.|..++++.
T Consensus 257 ~a~~k~er~~~~~~~~~~~-----------------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 257 RAQKRAEREAELRRKFEEL-----------------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred cccChhhhHHHHHhhHHhh-----------------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 8876533211100000000 00011123457899999999999999999999999999999998
Q ss_pred CCCC---cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 159 DSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 159 ~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+..+ |||||+|.+.++|.+|+..|||..+. ++.|.|..+.+
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~----gk~l~V~~a~~ 363 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG----GKPLYVALAQR 363 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC----CceeEEEeccC
Confidence 7533 79999999999999999999999998 89999988774
No 14
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=6.1e-28 Score=193.89 Aligned_cols=169 Identities=22% Similarity=0.369 Sum_probs=144.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcc-cC--CeeEEE
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYN-FD--GCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~--g~~l~v 77 (270)
.+.-.||||.||..++|.||+++|++||.|.+|.|+. ++.++|||||.|.+.++|.+|+..|++.. |- ..+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 4556799999999999999999999999999999955 57899999999999999999999999854 43 468899
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 024267 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~ 157 (270)
+++.....+. ....+|||+-|+..+++.+++++|++||.|++|.|+
T Consensus 112 k~Ad~E~er~----------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 112 KYADGERERI----------------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred cccchhhhcc----------------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 9887552221 234799999999999999999999999999999999
Q ss_pred eCCCC---cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCCCCCC
Q 024267 158 RDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSR 207 (270)
Q Consensus 158 ~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~r 207 (270)
++..+ |+|||.|.+.+-|..|++.|||..-. ......+.|++++..+++
T Consensus 158 rd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm-eGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 158 RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM-EGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ecccccccceeEEEEehHHHHHHHHHhhccceee-ccCCCceEEEecccCCCc
Confidence 98765 79999999999999999999998764 223677889998865444
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.1e-26 Score=204.74 Aligned_cols=188 Identities=18% Similarity=0.263 Sum_probs=140.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+..++|||+|||..+|+++|.++|+.||.|..+.|+. ++.++|||||+|.+.++|..|+..|||+.|+|++|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3458999999999999999999999999999999854 5778999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCC----------CHHHHHHHHHhcCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA----------SWQDLKDHMRKAGD 150 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~ 150 (270)
.............. .... ..... ............+...|+|.|+.... ..++|+++|.+||.
T Consensus 373 ~~~~~~~~~~~~~~--~~~~-~~~~~----~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~ 445 (509)
T TIGR01642 373 CVGANQATIDTSNG--MAPV-TLLAK----ALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP 445 (509)
T ss_pred ccCCCCCCcccccc--cccc-ccccc----cchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC
Confidence 75422211110000 0000 00000 00000001122346789999986321 23678999999999
Q ss_pred eeEEEEeeCCC-------CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 151 VCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 151 v~~~~~~~~~~-------~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|..|.|+.+.. .|++||+|++.++|++|+..|||..|. |+.|.+.+..
T Consensus 446 v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~----gr~v~~~~~~ 500 (509)
T TIGR01642 446 LINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN----DRVVVAAFYG 500 (509)
T ss_pred eeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEeC
Confidence 99999987521 269999999999999999999999998 8999887764
No 16
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.1e-27 Score=190.61 Aligned_cols=189 Identities=24% Similarity=0.305 Sum_probs=141.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCccc-CCeeEEEEecC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNF-DGCRLRVELAH 81 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g~~l~v~~~~ 81 (270)
.|-||||.||.++.+++|.-||+..|+|-+++|+.+ |.++|||||.|.+.++|+.|++.||+.+| -|+.|.|..+.
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 478999999999999999999999999999999654 78999999999999999999999999999 59999988775
Q ss_pred CCCCCC-----CCC------------------------CCCCCCCCC------------------CCCCCCCCCCCCC--
Q 024267 82 GGSGRG-----PSS------------------------SDRRGGYGG------------------GGAGGAGGAGAGA-- 112 (270)
Q Consensus 82 ~~~~~~-----~~~------------------------~~~~~~~~~------------------~~~~~~~~~~~~~-- 112 (270)
.+.... ..+ .......++ ..++.-.-.+...
T Consensus 163 an~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~tV 242 (506)
T KOG0117|consen 163 ANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAITV 242 (506)
T ss_pred ecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCccee
Confidence 432100 000 000000000 0000000000000
Q ss_pred -----CCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccc
Q 024267 113 -----GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 113 -----~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
..............|||.||+.++|++.|+++|..||.|..|+.++| ||||.|.+.++|.+|++.+||+++
T Consensus 243 dWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngkel 318 (506)
T KOG0117|consen 243 DWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKEL 318 (506)
T ss_pred eccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCcee
Confidence 00001112233468999999999999999999999999999999887 999999999999999999999999
Q ss_pred cCcccccceeeecCC
Q 024267 188 RNPWARGRITVKRYD 202 (270)
Q Consensus 188 ~~~~~~~~i~v~~~~ 202 (270)
. |..|.+..++
T Consensus 319 d----G~~iEvtLAK 329 (506)
T KOG0117|consen 319 D----GSPIEVTLAK 329 (506)
T ss_pred c----CceEEEEecC
Confidence 8 8888877665
No 17
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=6.2e-28 Score=184.69 Aligned_cols=146 Identities=33% Similarity=0.595 Sum_probs=135.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCCCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
-.|||||||..+++.+|+.||++||+|.+|.|+ +.||||..++...|..|+..|+|..|+|..|.|+.++++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs-- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS-- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccC--
Confidence 369999999999999999999999999999998 7899999999999999999999999999999999988761
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEE
Q 024267 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGV 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~f 166 (270)
....+|+|+|+.+.++.++|+..|++||+|+.++|.++ |+|
T Consensus 76 -----------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~f 116 (346)
T KOG0109|consen 76 -----------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAF 116 (346)
T ss_pred -----------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeE
Confidence 12368999999999999999999999999999999997 999
Q ss_pred EEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 167 VDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 167 v~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|.|+-.++|..|+..|++.++. |..+.|..+.
T Consensus 117 vh~d~~eda~~air~l~~~~~~----gk~m~vq~st 148 (346)
T KOG0109|consen 117 VHFDRAEDAVEAIRGLDNTEFQ----GKRMHVQLST 148 (346)
T ss_pred EEEeeccchHHHHhcccccccc----cceeeeeeec
Confidence 9999999999999999999998 7877776654
No 18
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=3.9e-27 Score=177.70 Aligned_cols=164 Identities=22% Similarity=0.333 Sum_probs=144.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+..+.|.|.-||..+|+|+|+.||..+|+|++|+++. +|.+.||+||.|-++++|++|+..|||..|..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4457799999999999999999999999999999954 5889999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... ...+..|||.+||..++..+|+++|+.||.|+.-.+..+.
T Consensus 119 RPSs~-----------------------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 119 RPSSD-----------------------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred cCChh-----------------------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 87522 2234689999999999999999999999999887777665
Q ss_pred CC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCCC
Q 024267 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
.+ |.+||.|+...+|++|++.|||..-.+ ....|.|+++..+
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g--~tepItVKFannP 209 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG--CTEPITVKFANNP 209 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCCC--CCCCeEEEecCCc
Confidence 44 599999999999999999999987653 3567889988754
No 19
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=3.4e-27 Score=168.93 Aligned_cols=165 Identities=22% Similarity=0.309 Sum_probs=142.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+...||||+||+..++++.|++||-+.|+|.++++.. +...+|||||+|.++|+|+-|++.||...|.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5568999999999999999999999999999999955 4678999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~ 159 (270)
... ......+.+|||+||.+.+++..|-+.|+.||.+.. -+++.+
T Consensus 87 s~~----------------------------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 87 SAH----------------------------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred ccc----------------------------------cccccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 621 111223478999999999999999999999998876 366666
Q ss_pred CCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCCCCC
Q 024267 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 160 ~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
..+ +++||.|++.+.+.+|+..|+|..+. .+.|.|.++.+...
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLC----NRPITVSYAFKKDT 179 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhc----CCceEEEEEEecCC
Confidence 653 59999999999999999999999998 88898888765433
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.2e-25 Score=195.49 Aligned_cols=193 Identities=23% Similarity=0.329 Sum_probs=140.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+++|||+|||..+|+++|.++|++||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999964 357799999999999999999999999999999999999764
Q ss_pred CCCCCCCCCCCC-------CC-----------------CCCCCCCCCCCCCC------------------------CCC-
Q 024267 83 GSGRGPSSSDRR-------GG-----------------YGGGGAGGAGGAGA------------------------GAG- 113 (270)
Q Consensus 83 ~~~~~~~~~~~~-------~~-----------------~~~~~~~~~~~~~~------------------------~~~- 113 (270)
............ .+ ....+....++... ...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 321111000000 00 00000000000000 000
Q ss_pred --C-CCCCC---CCCCcceEEEcCCCCCCC----------HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHH
Q 024267 114 --A-GRFGI---SRHSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKY 177 (270)
Q Consensus 114 --~-~~~~~---~~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~ 177 (270)
. ..... ......+|+|.||....+ .++|++.|.+||.|+.+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 00000 124557899999854444 3679999999999999999866666899999999999999
Q ss_pred HHHHcCCccccCcccccceeeecCC
Q 024267 178 AIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 178 a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|++.|||..+. |+.|.+.+..
T Consensus 426 A~~~lnGr~f~----gr~i~~~~~~ 446 (457)
T TIGR01622 426 AFQALNGRYFG----GKMITAAFVV 446 (457)
T ss_pred HHHHhcCcccC----CeEEEEEEEc
Confidence 99999999999 8999887654
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=8.1e-26 Score=186.63 Aligned_cols=181 Identities=19% Similarity=0.286 Sum_probs=146.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.||||++||+.++.++|.++|+.+|+|..+.+... +.++||+||.|.=.++++.|+..+++..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 79999999999999999999999999999999543 467999999999999999999999999999999999999866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024267 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAG--RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
................. .... .......+.+.|+|.|||..+...+|+.+|+.||.|..+.|+....
T Consensus 86 ~r~e~~~~~e~~~veK~-----------~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d 154 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKP-----------IEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD 154 (678)
T ss_pred ccchhcccccchhhhcc-----------cccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC
Confidence 43321111000000000 0000 0011123468999999999999999999999999999999997766
Q ss_pred C---cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 162 G---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 162 ~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+ |||||+|....+|..|++.+|+.+|. |+.|.|+++-
T Consensus 155 gklcGFaFV~fk~~~dA~~Al~~~N~~~i~----gR~VAVDWAV 194 (678)
T KOG0127|consen 155 GKLCGFAFVQFKEKKDAEKALEFFNGNKID----GRPVAVDWAV 194 (678)
T ss_pred CCccceEEEEEeeHHHHHHHHHhccCceec----CceeEEeeec
Confidence 5 69999999999999999999999999 9999988864
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=5.5e-24 Score=175.88 Aligned_cols=178 Identities=21% Similarity=0.361 Sum_probs=132.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEe--cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+--.|+|.|||+.+.+.+|..+|+.||.|.+|.|. .+++.+|||||+|.+..+|..||+.||+..|+|++|.|.|+-.
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 35689999999999999999999999999999994 3567789999999999999999999999999999999999976
Q ss_pred CCCCCCCC-------------C-----CCCCCC---------CCC--C--CC--CC---C------------CC-CCCCC
Q 024267 83 GSGRGPSS-------------S-----DRRGGY---------GGG--G--AG--GA---G------------GA-GAGAG 113 (270)
Q Consensus 83 ~~~~~~~~-------------~-----~~~~~~---------~~~--~--~~--~~---~------------~~-~~~~~ 113 (270)
+..-.... . ....+. ... . .+ .. + .. ++...
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence 53211100 0 000000 000 0 00 00 0 00 00000
Q ss_pred CCCC------CCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHc
Q 024267 114 AGRF------GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 114 ~~~~------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l 182 (270)
.... ......+.+|||.|||+++++++|.++|++||+|.++.+..++.+ |.|||.|.+..+|+.||...
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0000 111233579999999999999999999999999999999888766 69999999999999999866
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.5e-24 Score=162.66 Aligned_cols=192 Identities=21% Similarity=0.285 Sum_probs=144.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--eeEEEEecC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAH 81 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~ 81 (270)
..|||.+||+.+|..+|+++|++||.|..-+|.. ++.++|.+||.|...++|+.|+..|||..--| .+|.|+++.
T Consensus 128 aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFan 207 (360)
T KOG0145|consen 128 ANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFAN 207 (360)
T ss_pred cceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecC
Confidence 4799999999999999999999999998877743 57899999999999999999999999987754 689999998
Q ss_pred CCCCCCCCCC-CCC-CCCCCCCCCCCC------------------------CCCCCCC--CCCCCCCCCCcceEEEcCCC
Q 024267 82 GGSGRGPSSS-DRR-GGYGGGGAGGAG------------------------GAGAGAG--AGRFGISRHSEYRVIVRGLP 133 (270)
Q Consensus 82 ~~~~~~~~~~-~~~-~~~~~~~~~~~~------------------------~~~~~~~--~~~~~~~~~~~~~l~v~~l~ 133 (270)
.......... ... ........|... ......+ +.........+++|||-||.
T Consensus 208 nPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNLs 287 (360)
T KOG0145|consen 208 NPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNLS 287 (360)
T ss_pred CcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEecC
Confidence 7633211100 000 000000000000 0000000 00112233457999999999
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+++++.-|-++|..||.|..|++++|..+ ||+||.+.+.++|.-|+..|||..+. ++.+.|.+..
T Consensus 288 pd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg----~rvLQVsFKt 356 (360)
T KOG0145|consen 288 PDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG----DRVLQVSFKT 356 (360)
T ss_pred CCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc----ceEEEEEEec
Confidence 99999999999999999999999998764 79999999999999999999999998 8888887653
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2e-25 Score=176.12 Aligned_cols=168 Identities=20% Similarity=0.333 Sum_probs=141.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
|.||||.|.+.+.++.|+..|..||+|++|.|. .+++++|||||+|+-+|.|+.|++.|||..++|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 689999999999999999999999999999994 46789999999999999999999999999999999999854332
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-
Q 024267 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
..-.+ ..+........-+.|||..+.+++.++||+..|+-||+|..|.+.+++.+
T Consensus 194 pQAQp------------------------iID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 194 PQAQP------------------------IIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 249 (544)
T ss_pred cccch------------------------HHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC
Confidence 11000 00000112233479999999999999999999999999999999988755
Q ss_pred ---cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 ---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
||+|++|.+.....+|+..||-..++ |.+++|...-
T Consensus 250 ~HkGyGfiEy~n~qs~~eAiasMNlFDLG----GQyLRVGk~v 288 (544)
T KOG0124|consen 250 GHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCV 288 (544)
T ss_pred CccceeeEEeccccchHHHhhhcchhhcc----cceEeccccc
Confidence 69999999999999999999999998 8888876654
No 25
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.9e-24 Score=162.70 Aligned_cols=164 Identities=40% Similarity=0.700 Sum_probs=134.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCCCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||++||+.+.+.+|+.||..||.|.++.|+ .||+||+|.++.+|..|+..||+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 369999999999999999999999999999998 689999999999999999999999999999888888754111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEE
Q 024267 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGV 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~f 166 (270)
. +..+++...........+....+.++|.+++..+.+.+|.++|..+|.+....+.. +++|
T Consensus 77 ~---------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~~ 137 (216)
T KOG0106|consen 77 R---------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFAF 137 (216)
T ss_pred c---------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----cccc
Confidence 1 00000000001233455567788999999999999999999999999995554432 4899
Q ss_pred EEecChhhHHHHHHHcCCccccCcccccceee
Q 024267 167 VDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 167 v~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
|+|.+.++|..|+..|++..+. ++.|.+
T Consensus 138 v~Fs~~~da~ra~~~l~~~~~~----~~~l~~ 165 (216)
T KOG0106|consen 138 VEFSEQEDAKRALEKLDGKKLN----GRRISV 165 (216)
T ss_pred eeehhhhhhhhcchhccchhhc----Cceeee
Confidence 9999999999999999999998 888888
No 26
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.90 E-value=4.3e-22 Score=148.42 Aligned_cols=196 Identities=17% Similarity=0.227 Sum_probs=146.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHH----HhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEE
Q 024267 2 SGRFSRTIYVGNLPSDIREYEVED----LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 2 ~~~~~~~l~v~nl~~~~t~~~L~~----~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+..++.||||.||+..+..++|.. ||++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|+.+.|++|+|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 446778999999999999999888 9999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCC----CCCCCCC--------CCCCCCCCCC--CCCCCCCC-CCCCCCCcceEEEcCCCCCCCHHHHH
Q 024267 78 ELAHGGSGRGPSSS----DRRGGYG--------GGGAGGAGGA--GAGAGAGR-FGISRHSEYRVIVRGLPSSASWQDLK 142 (270)
Q Consensus 78 ~~~~~~~~~~~~~~----~~~~~~~--------~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~l~v~~l~~~~~~~~l~ 142 (270)
+|++.......... ....... ......+... ....-+.. ......+...+++.|||..++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99987643221110 0000000 0000000000 00000011 13345677899999999999999999
Q ss_pred HHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecC
Q 024267 143 DHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 143 ~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+|..|.....+.++.... +.|||+|.+...|..|...++|..+.. ...+.+.++
T Consensus 165 ~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it~---~~~m~i~~a 219 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKITK---KNTMQITFA 219 (221)
T ss_pred HHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceecc---CceEEeccc
Confidence 9999999888887776554 499999999999999999999988863 444444443
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.4e-22 Score=168.08 Aligned_cols=150 Identities=26% Similarity=0.407 Sum_probs=134.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCCCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||| +++|+.+|.++|+.+|+|.++++..+-.+.|||||.|.++++|.+||..||...|.|++|.|-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 478999 999999999999999999999994332399999999999999999999999999999999999987441
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--cE
Q 024267 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TY 164 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~ 164 (270)
..+||.||+++++..+|.++|+.||.|+.|++..+..+ ||
T Consensus 77 --------------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~ 118 (369)
T KOG0123|consen 77 --------------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY 118 (369)
T ss_pred --------------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee
Confidence 12999999999999999999999999999999999876 68
Q ss_pred EEEEecChhhHHHHHHHcCCccccCcccccceeeecCCCC
Q 024267 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 165 ~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
||+|++++.|.+|++.|||..+. +..|-+....+.
T Consensus 119 -FV~f~~e~~a~~ai~~~ng~ll~----~kki~vg~~~~~ 153 (369)
T KOG0123|consen 119 -FVQFESEESAKKAIEKLNGMLLN----GKKIYVGLFERK 153 (369)
T ss_pred -EEEeCCHHHHHHHHHHhcCcccC----CCeeEEeeccch
Confidence 99999999999999999999998 788877666543
No 28
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=3.3e-22 Score=142.56 Aligned_cols=78 Identities=27% Similarity=0.403 Sum_probs=71.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.++|||+||+..+++.||+.+|..||+|..|.|...++ |||||+|+++.+|+.|+..|+|+.|. +..|+|+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPP-GfAFVEFed~RDA~DAvr~LDG~~~c----G~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPP-GFAFVEFEDPRDAEDAVRYLDGKDIC----GSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCC-CceEEeccCcccHHHHHhhcCCcccc----CceEEEEeecC
Confidence 57999999999999999999999999999999988554 69999999999999999999999999 99999999885
Q ss_pred CCC
Q 024267 204 SPS 206 (270)
Q Consensus 204 ~~~ 206 (270)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 443
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.8e-22 Score=171.85 Aligned_cols=166 Identities=23% Similarity=0.418 Sum_probs=140.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CC----CCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+|||.||++.+|.++|..+|...|.|..+.|.. ++ .+.|||||+|.++++|+.|+..|+|+.|+|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998843 22 245999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024267 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
........ ...........|+|.|||...+..+++++|..||.|..|.++....
T Consensus 597 ~k~~~~~g--------------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~ 650 (725)
T KOG0110|consen 597 NKPASTVG--------------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIG 650 (725)
T ss_pred Cccccccc--------------------------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhc
Confidence 43221111 1122223357999999999999999999999999999999887622
Q ss_pred ----CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 162 ----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 162 ----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.|||||+|-++.+|..|++.|.++.+- |+++.+.++..
T Consensus 651 k~a~rGF~Fv~f~t~~ea~nA~~al~STHly----GRrLVLEwA~~ 692 (725)
T KOG0110|consen 651 KGAHRGFGFVDFLTPREAKNAFDALGSTHLY----GRRLVLEWAKS 692 (725)
T ss_pred chhhccceeeeccCcHHHHHHHHhhccccee----chhhheehhcc
Confidence 269999999999999999999999998 99998888763
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.6e-21 Score=159.11 Aligned_cols=168 Identities=27% Similarity=0.437 Sum_probs=143.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++...|||.||+++++..+|..+|+.||+|.+|++..+ ..++|| ||+|+++++|.+|++.|||..+.|++|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 45555999999999999999999999999999999654 348999 9999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC
Q 024267 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
...+...... ....-..++|.+++.+++++.|.++|..+|.|..+.++.+..+
T Consensus 153 ~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g 205 (369)
T KOG0123|consen 153 KEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG 205 (369)
T ss_pred hhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC
Confidence 6443322211 1223368999999999999999999999999999999987654
Q ss_pred ---cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+|+||.|++.++|..|++.|++..+. +..+.|..+..
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~----~~~~~V~~aqk 245 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFG----DKELYVGRAQK 245 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCC----ccceeeccccc
Confidence 69999999999999999999999987 66666666654
No 31
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=7.3e-20 Score=159.08 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||+||++++++++|+++|+.||.|.++.|.. ++.++|||||+|.+.++|.+|+..||++.|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 45789999999999999999999999999999999999987
Q ss_pred CC
Q 024267 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 54
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.86 E-value=2.8e-20 Score=135.01 Aligned_cols=82 Identities=24% Similarity=0.479 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..+++|||+|||+.+++++|+++|.+||.|.+|.|+. ++.++|||||+|.++++|+.|++.||+..|+|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999964 5678999999999999999999999999999999999998
Q ss_pred CCCCC
Q 024267 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 112 ~~~~~ 116 (144)
T PLN03134 112 NDRPS 116 (144)
T ss_pred CcCCC
Confidence 76533
No 33
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=8.3e-20 Score=130.35 Aligned_cols=78 Identities=45% Similarity=0.715 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
...+.||||||+..+++.||+.+|..||.|..|.|.. .+.|||||+|+++.+|+.|+..|+|..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4578999999999999999999999999999998854 56899999999999999999999999999999999998765
No 34
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.85 E-value=4.1e-20 Score=136.85 Aligned_cols=184 Identities=19% Similarity=0.272 Sum_probs=131.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCC----CcEEEEEEcCHHHHHHHHHhcCCcccC---CeeEEE
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRP----PCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRV 77 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v 77 (270)
.-+||||.+||.++.+-+|..||..|-..+...|+.+++. +-+|||.|.+..+|..|+..|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 3589999999999999999999999887888888766543 489999999999999999999999995 889999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCC---------C---------C-CCCCCCCC---CC----------------------
Q 024267 78 ELAHGGSGRGPSSSDRRGGYGGGG---------A---------G-GAGGAGAG---AG---------------------- 113 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~---------~---------~-~~~~~~~~---~~---------------------- 113 (270)
++++.....+........+....- . + ..+..-.. ..
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 999876543322211100000000 0 0 00000000 00
Q ss_pred -------CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCcc
Q 024267 114 -------AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 114 -------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 186 (270)
............+|||.||...+++++|+++|+.|.....+++........||++|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0000011122348999999999999999999999987766666544333499999999999999999999998
Q ss_pred cc
Q 024267 187 FR 188 (270)
Q Consensus 187 ~~ 188 (270)
+.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 86
No 35
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=1.4e-20 Score=143.17 Aligned_cols=139 Identities=27% Similarity=0.417 Sum_probs=117.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|.+++.+||||+||...+|++-|..||+++|.|..++|+.+ .|+|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 56788999999999999999999999999999999998743 4556555
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
....... .+....-..+||+.|...++-++|++.|.+||+|.++++++|.
T Consensus 49 ~~p~nQs------------------------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 49 TAPGNQS------------------------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred cCcccCC------------------------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 4431111 1111123579999999999999999999999999999999997
Q ss_pred CC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCCCC
Q 024267 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+ ||+||.|...++|+.||..|||..|. .+.|+..++.+.+
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG----~R~IRTNWATRKp 143 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG----RRTIRTNWATRKP 143 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeec----cceeeccccccCc
Confidence 76 69999999999999999999999999 9999999998876
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=1.3e-20 Score=151.14 Aligned_cols=167 Identities=18% Similarity=0.313 Sum_probs=137.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEE
Q 024267 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
|+..+.++|||++|+++++++.|+..|.+||+|.+|.++. ++.+++|+||+|++++.+..+|. ...+.|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 3446889999999999999999999999999999999966 47889999999999999999998 6678999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEe
Q 024267 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~ 157 (270)
+.+.+......... ......|||++||.++++++++++|.+||.|..+.++
T Consensus 80 k~av~r~~~~~~~~-----------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~ 130 (311)
T KOG4205|consen 80 KRAVSREDQTKVGR-----------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIM 130 (311)
T ss_pred eeccCccccccccc-----------------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEe
Confidence 98876633221110 1134699999999999999999999999999999988
Q ss_pred eCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 158 RDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 158 ~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+... +|+||.|.+.+.+.+++. .+-..+. +..+.|+.+.
T Consensus 131 ~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~----gk~vevkrA~ 174 (311)
T KOG4205|consen 131 YDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN----GKKVEVKRAI 174 (311)
T ss_pred ecccccccccceeeEeccccccceecc-cceeeec----CceeeEeecc
Confidence 88655 699999999999888876 4444454 5555555544
No 37
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=5.7e-20 Score=139.69 Aligned_cols=193 Identities=21% Similarity=0.281 Sum_probs=141.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCc-ccCC--eeEEEEe
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGY-NFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~-~~~g--~~l~v~~ 79 (270)
+.+.||||.|.+.-.+||++.+|..||.|++|.+.. ++.++|+|||.|.+..+|..||..|+|. .+-| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568899999999999999999999999999999954 6789999999999999999999999993 4444 5788888
Q ss_pred cCCCCCCCC-----------------------------------------------------------------------
Q 024267 80 AHGGSGRGP----------------------------------------------------------------------- 88 (270)
Q Consensus 80 ~~~~~~~~~----------------------------------------------------------------------- 88 (270)
+....++.-
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 864322000
Q ss_pred CCCCC----------------------CCCCCCCCCCCCC-----------CCCCCCC----------------------
Q 024267 89 SSSDR----------------------RGGYGGGGAGGAG-----------GAGAGAG---------------------- 113 (270)
Q Consensus 89 ~~~~~----------------------~~~~~~~~~~~~~-----------~~~~~~~---------------------- 113 (270)
..... .+++.+......+ -..+..+
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00000 0000000000000 0000000
Q ss_pred C-----------------CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc----EEEEEecCh
Q 024267 114 A-----------------GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNP 172 (270)
Q Consensus 114 ~-----------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g----~~fv~f~~~ 172 (270)
+ ......-.++|+|||-.||....+.+|.+.|-.||.|+..++..|..++ |+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 0 0001122568999999999999999999999999999999999887664 999999999
Q ss_pred hhHHHHHHHcCCccccCcccccceeeecC
Q 024267 173 EDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 173 ~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..|+.||..|||.+|+ -++++|...
T Consensus 338 ~SaQaAIqAMNGFQIG----MKRLKVQLK 362 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIG----MKRLKVQLK 362 (371)
T ss_pred hhHHHHHHHhcchhhh----hhhhhhhhc
Confidence 9999999999999998 677766554
No 38
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=3.7e-20 Score=153.82 Aligned_cols=189 Identities=23% Similarity=0.332 Sum_probs=133.7
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCCC
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
.|||+||-+++++++|+.+|+.||.|..|.+.. +|.++|||||+|.+.++|..|+..|||+.|.|+.|+|.......
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~ 359 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERV 359 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeec
Confidence 399999999999999999999999999999954 68999999999999999999999999999999999998876543
Q ss_pred CCCCC---CCCCCCCCCCCC---CCCC--------CCCC---------------CCCC----C----CCCCCCC------
Q 024267 85 GRGPS---SSDRRGGYGGGG---AGGA--------GGAG---------------AGAG----A----GRFGISR------ 121 (270)
Q Consensus 85 ~~~~~---~~~~~~~~~~~~---~~~~--------~~~~---------------~~~~----~----~~~~~~~------ 121 (270)
..... .......-.++. .++. .+.+ .... . .....+.
T Consensus 360 ~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~ 439 (549)
T KOG0147|consen 360 DTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAF 439 (549)
T ss_pred ccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCcccccccc
Confidence 32211 111110000000 0000 0000 0000 0 0011111
Q ss_pred -CCcceEEEcCCCC--CCC--------HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCc
Q 024267 122 -HSEYRVIVRGLPS--SAS--------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 122 -~~~~~l~v~~l~~--~~~--------~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
.+..++.+.|+-. ..| .+++.+.|.++|+|+.|.+..+.. |+.||.|.+.+.|..|+..|||..|.
T Consensus 440 ~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~-- 516 (549)
T KOG0147|consen 440 DIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFA-- 516 (549)
T ss_pred CCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhc--
Confidence 4455677777632 222 257888999999998777766655 79999999999999999999999998
Q ss_pred ccccceeeecC
Q 024267 191 WARGRITVKRY 201 (270)
Q Consensus 191 ~~~~~i~v~~~ 201 (270)
++.|...+-
T Consensus 517 --gr~Ita~~~ 525 (549)
T KOG0147|consen 517 --GRMITAKYL 525 (549)
T ss_pred --cceeEEEEe
Confidence 888876553
No 39
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=4e-20 Score=149.21 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=72.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCcc-cC--CeeEEEEe
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYN-FD--GCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~--g~~l~v~~ 79 (270)
+.+.|||+.|++.+|+.+|+++|++||.|++|.|..+ +.++|||||.|.+.|.|..||+.|||.. +. ..+|.|+|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 3678999999999999999999999999999999764 6899999999999999999999999943 44 57999999
Q ss_pred cCCCCC
Q 024267 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 203 ADtqkd 208 (510)
T KOG0144|consen 203 ADTQKD 208 (510)
T ss_pred cccCCC
Confidence 976543
No 40
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.83 E-value=1.9e-19 Score=131.86 Aligned_cols=80 Identities=34% Similarity=0.524 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.-++|.|.||.+.+++++|..+|++||.|-+|.|.. +..++|||||.|.+..+|+.|++.|+|.+|+|+.|.|+++
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 3457899999999999999999999999999999954 6789999999999999999999999999999999999998
Q ss_pred CCC
Q 024267 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.-.
T Consensus 91 ryg 93 (256)
T KOG4207|consen 91 RYG 93 (256)
T ss_pred hcC
Confidence 754
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=4.2e-21 Score=159.44 Aligned_cols=173 Identities=22% Similarity=0.298 Sum_probs=141.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.+|||+-.|+..+++-+|.+||+.+|+|.+|.++.+ ..++|.|||+|.+.+++-.||. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 45678899999999999999999999999999999654 5789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
................ +.-..+-..|||+||..++++++|+.+|+.||.|..|.++.+.
T Consensus 256 Eaeknr~a~~s~a~~~---------------------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 256 EAEKNRAANASPALQG---------------------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS 314 (549)
T ss_pred HHHHHHHHhccccccc---------------------cccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence 6543332211111100 0001112339999999999999999999999999999999886
Q ss_pred CC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 161 ~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+ ||+||+|.+.++|..|+..|||.++. |+.|+|....
T Consensus 315 ~tG~skgfGfi~f~~~~~ar~a~e~lngfelA----Gr~ikV~~v~ 356 (549)
T KOG0147|consen 315 ETGRSKGFGFITFVNKEDARKALEQLNGFELA----GRLIKVSVVT 356 (549)
T ss_pred ccccccCcceEEEecHHHHHHHHHHhccceec----CceEEEEEee
Confidence 33 69999999999999999999998888 8888876543
No 42
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.82 E-value=1.1e-20 Score=150.51 Aligned_cols=182 Identities=17% Similarity=0.137 Sum_probs=120.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEE
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.-..|.|.||.+++|.++|+.||..+|+|.++.|+.+ +.....|||.|.+...+..|.. |.++.|-|+.|.|-
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 3458999999999999999999999999999999653 2345789999999999999999 66666666666665
Q ss_pred ecCCC-CCCCCCC---CCCCCCCCC-CCCCCCCCCCCCCCCC------CCCCCC----------CCcceEEEcCCCCCCC
Q 024267 79 LAHGG-SGRGPSS---SDRRGGYGG-GGAGGAGGAGAGAGAG------RFGISR----------HSEYRVIVRGLPSSAS 137 (270)
Q Consensus 79 ~~~~~-~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~------~~~~~~----------~~~~~l~v~~l~~~~~ 137 (270)
+.... ....... .......+. .++|-.++.......+ ...++. .-..+++|++|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 54332 1111000 000000000 0111111111110000 000110 1124799999999999
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCcccc
Q 024267 138 WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..++.+.|..+|.|...++......-+|.+.|........|+. ++|..+.
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999999999888777666688899988877777776 5555553
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.80 E-value=6.6e-18 Score=135.62 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=142.7
Q ss_pred CceEEEcCCCCC-CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCCC
Q 024267 6 SRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 ~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++.|.|.||... +|++-|..+|.-||+|..|+|.... +-.|+|+|.+...|+.|++.|+|..|.|++|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 688999999665 9999999999999999999996543 3679999999999999999999999999999999998764
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcE
Q 024267 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~ 164 (270)
-..+.......++........-..-...+...+..-..+..+|.+.|+|.++++++|+.+|..-|..........+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 33333222211111110000000000011112222334567999999999999999999999998776666555555569
Q ss_pred EEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 165 ~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+++.+++.++|..|+..++...+. ++..++|.+++
T Consensus 455 al~q~~sveeA~~ali~~hnh~lg---en~hlRvSFSk 489 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLG---ENHHLRVSFSK 489 (492)
T ss_pred eecccCChhHhhhhccccccccCC---CCceEEEEeec
Confidence 999999999999999999999887 35688888764
No 44
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.79 E-value=2.1e-18 Score=126.37 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=71.0
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCccccccee
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....|.|.||.+.++.++|..+|++||.|-+|.|+.+..+ |||||.|....+|+.|++.|+|..++ ++.|+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld----gRelr 86 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD----GRELR 86 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec----cceee
Confidence 34478999999999999999999999999999999999765 69999999999999999999999999 99998
Q ss_pred eecCC
Q 024267 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..++
T Consensus 87 Vq~ar 91 (256)
T KOG4207|consen 87 VQMAR 91 (256)
T ss_pred ehhhh
Confidence 87765
No 45
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.8e-19 Score=120.93 Aligned_cols=80 Identities=38% Similarity=0.562 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..++||||+||+.-+++|+|.+||+.+|+|..|.| ..+..+.|||||+|.+.++|..||..++|+.|+.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999988 334567999999999999999999999999999999999998
Q ss_pred CCC
Q 024267 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 754
No 46
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.77 E-value=1.9e-17 Score=136.24 Aligned_cols=167 Identities=23% Similarity=0.265 Sum_probs=128.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.....|.+.+||+++|++||.+||+.|+ |.++.+.. ++++.|-|||+|.++|++++|++ .+...+..+.|.|-.+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 3456788999999999999999999996 78887755 48999999999999999999999 899999999999988765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeE-EEEeeC--
Q 024267 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD-- 159 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~~-- 159 (270)
.+...... .... ........|.+.+||..++++||.++|+-.--|.. +.+..+
T Consensus 86 ~e~d~~~~---~~g~---------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r 141 (510)
T KOG4211|consen 86 AEADWVMR---PGGP---------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR 141 (510)
T ss_pred cccccccc---CCCC---------------------CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC
Confidence 53311111 0000 00023468999999999999999999998765544 333333
Q ss_pred -CCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecC
Q 024267 160 -SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 160 -~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
+.+|-|||.|++.+.|++|+. -|...|. .++|.|-.+
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~-rhre~iG----hRYIEvF~S 179 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALG-RHRENIG----HRYIEVFRS 179 (510)
T ss_pred CCcccceEEEecCHHHHHHHHH-HHHHhhc----cceEEeehh
Confidence 345799999999999999998 4555665 777776543
No 47
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=5e-17 Score=125.60 Aligned_cols=81 Identities=33% Similarity=0.588 Sum_probs=76.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEe
Q 024267 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
++|-+||||+-|+.++++..|+..|+.||+|+.|.|+ .+++++|||||+|.++.+...|.+..+|..|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 4788999999999999999999999999999999994 4689999999999999999999999999999999999998
Q ss_pred cCCC
Q 024267 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
-...
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 7765
No 48
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.75 E-value=1.2e-16 Score=129.60 Aligned_cols=183 Identities=26% Similarity=0.395 Sum_probs=133.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhh-cccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~-~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.+||+|||+++...+|+.||. +.|+|..|.+..+ ++++|+|.|+|+++|.+++|++.||.+.+.|++|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999997 5789999999664 7899999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCC--C----------CCCCCCCCC--CCCCC----------------CCCCC---------------C-
Q 024267 82 GGSGRGPSSSDRR--G----------GYGGGGAGG--AGGAG----------------AGAGA---------------G- 115 (270)
Q Consensus 82 ~~~~~~~~~~~~~--~----------~~~~~~~~~--~~~~~----------------~~~~~---------------~- 115 (270)
..........-+. + ++.....+. ++... +.... .
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 5322111110000 0 000000000 00000 00000 0
Q ss_pred ----CCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHHcCCccc
Q 024267 116 ----RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 116 ----~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
......+...++||.||.+.+....|.+.|.-.|.|..+.+-.++.+ |++.++|..+-+|-+||..+++.-+
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~ 281 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGL 281 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCC
Confidence 00011233468999999999999999999999999999888777654 6999999999999999999987543
No 49
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.74 E-value=1.2e-17 Score=129.37 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=72.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|..||. |||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 6899999999999999999999999999999998877778999999999999999997 9999999999999998754
No 50
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=6.3e-18 Score=108.23 Aligned_cols=68 Identities=40% Similarity=0.764 Sum_probs=64.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEE
Q 024267 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|||+|||.++|+++|.++|++||.|..+.+.. .+..+++|||+|.+.++|+.|++.|+|..|.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 467889999999999999999999999999999885
No 51
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.74 E-value=9e-17 Score=126.63 Aligned_cols=194 Identities=20% Similarity=0.198 Sum_probs=138.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEE--------EEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCe
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
.-++.|||.|||.++|.+++.++|++||.|.. |+|.. .|..+|-|+|.|-..+++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 34677999999999999999999999997743 55543 478899999999999999999999999999999
Q ss_pred eEEEEecCCCCCCCCCCCCCCC--C--CCCCCCCCCCCCCCCCCCCC-CCCCCCCcceEEEcCCCC----CCC-------
Q 024267 74 RLRVELAHGGSGRGPSSSDRRG--G--YGGGGAGGAGGAGAGAGAGR-FGISRHSEYRVIVRGLPS----SAS------- 137 (270)
Q Consensus 74 ~l~v~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~~l~~----~~~------- 137 (270)
.|+|+.++-............. + ....... ..-.-.-.+.. .........+|.+.|+-. ..+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~--q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQ--QQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHH--HHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 9999988643211110000000 0 0000000 00000000000 011223457888988742 222
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 138 WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.++|.+.+.+||.|..|.+....+.|.+.|.|.+.++|..||+.|+|+.+. ++.|.....++
T Consensus 290 kedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd----gRql~A~i~DG 351 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD----GRQLTASIWDG 351 (382)
T ss_pred HHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeec----ceEEEEEEeCC
Confidence 356788899999999999998888899999999999999999999999999 88888776654
No 52
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=3.7e-17 Score=142.10 Aligned_cols=136 Identities=21% Similarity=0.294 Sum_probs=100.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++|||+||+..+++++|+++|+.| |.|..|.+. ++||||+|.+.++|.+|++.||+..|.|+.|+|.++.+
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 67999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCee
Q 024267 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~ 152 (270)
....... .+..+.++ .+...................++++.|++...+++.+.++|...|.|.
T Consensus 307 ~~~~~~~------~~~rg~gg-~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYV------RYTRGTGG-RGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCccccc------ccccccCC-CcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 5322110 00000000 000000000001112233567899999999999999999999988764
No 53
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=1.5e-16 Score=136.17 Aligned_cols=191 Identities=22% Similarity=0.289 Sum_probs=138.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCCC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
..+.|+|+|||..+..++|..+|..||.|..+.|... -.-|+|+|.++.+|.+|+..|....+...+|.+.|+....
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 3578999999999999999999999999999966422 2249999999999999999999999999999998886442
Q ss_pred CCCCCCCCCCC--CCCC----------CCCCCCCCCCC--CCCCCCCCCCC-CCcceEEEcCCCCCCCHHHHHHHHHhcC
Q 024267 85 GRGPSSSDRRG--GYGG----------GGAGGAGGAGA--GAGAGRFGISR-HSEYRVIVRGLPSSASWQDLKDHMRKAG 149 (270)
Q Consensus 85 ~~~~~~~~~~~--~~~~----------~~~~~~~~~~~--~~~~~~~~~~~-~~~~~l~v~~l~~~~~~~~l~~~f~~~g 149 (270)
-.......... .... ...+....... ........... ...+.|||.||+..++.++|..+|...|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 22111100000 0000 00000000000 00000000111 1223399999999999999999999999
Q ss_pred CeeEEEEeeCCCC-------cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 150 DVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 150 ~v~~~~~~~~~~~-------g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.|..+.|..-... |||||+|.++++|+.|++.|+|+.+. |+.|.+..+.
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld----GH~l~lk~S~ 596 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD----GHKLELKISE 596 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec----CceEEEEecc
Confidence 9999988766544 89999999999999999999999999 9999998887
No 54
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=1.7e-16 Score=131.28 Aligned_cols=81 Identities=28% Similarity=0.463 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--eeEEEEe
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
..++|||+|||..+|+++|+++|++||.|..+.|+. ++.+++||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 56788999999999999999999999998866 7899999
Q ss_pred cCCCCC
Q 024267 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 272 a~~~~~ 277 (346)
T TIGR01659 272 AEEHGK 277 (346)
T ss_pred CCcccc
Confidence 886533
No 55
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.72 E-value=8.7e-17 Score=122.60 Aligned_cols=79 Identities=24% Similarity=0.241 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
....+|||+||++.+|+++|+++|+.||+|.+|.|..++...+||||+|.++++|..|+. |+|..|.|++|.|......
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 456899999999999999999999999999999999888888999999999999999997 9999999999999987754
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=7.1e-17 Score=105.21 Aligned_cols=80 Identities=34% Similarity=0.445 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.++.|||.|||+.+|.|++.++|..||.|..|.|-.+...+|.|||.|++..+|.+|+..|+|..+.++.|.|-+..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 56788999999999999999999999999999999777777999999999999999999999999999999999987754
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.5e-16 Score=119.75 Aligned_cols=80 Identities=36% Similarity=0.540 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++++|.|.||+.++++++|++||..||.|..+.| +.+|.++|||||.|.+.++|.+||..|||+=++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 57889999999999999999999999999999999 457899999999999999999999999999999999999999
Q ss_pred CCC
Q 024267 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 865
No 58
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=3e-16 Score=100.31 Aligned_cols=68 Identities=29% Similarity=0.605 Sum_probs=61.1
Q ss_pred EEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEE
Q 024267 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999654 55789999999999999999999999999999884
No 59
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=1.3e-17 Score=119.79 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++..|||||||+.+|+.||.-+|++||+|.+|.++. ||+++||||+.|++..+...|+..|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 4678899999999999999999999999999999954 7899999999999999999999999999999999999998
Q ss_pred CCCC
Q 024267 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 7663
No 60
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.65 E-value=5.2e-16 Score=130.79 Aligned_cols=184 Identities=19% Similarity=0.279 Sum_probs=132.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...+.|+|++||..+++.++.++...||.+..+.+.. ++.++||||.+|.++.-...|+..|||+.+++++|.|+.+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3457899999999999999999999999999988854 4689999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCC--CCCCC-H-------HHHHHHHHhcCC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGL--PSSAS-W-------QDLKDHMRKAGD 150 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l--~~~~~-~-------~~l~~~f~~~g~ 150 (270)
-........+...... +-.+. ..-+......+...|.+.|+ |..+. + ++++..|.+||.
T Consensus 367 ~~g~~~~~~~~~~~~~--~~~~i---------~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~ 435 (500)
T KOG0120|consen 367 IVGASNANVNFNISQS--QVPGI---------PLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA 435 (500)
T ss_pred hccchhccccCCcccc--ccccc---------hhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc
Confidence 7654333322220000 00000 00000111222333444442 11111 1 346777889999
Q ss_pred eeEEEEeeC-CC------CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 151 VCFAEVSRD-SE------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 151 v~~~~~~~~-~~------~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|..|++..+ .. .|..||+|.+.++++.|+++|+|.++. ++.+...+..
T Consensus 436 v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~----nRtVvtsYyd 490 (500)
T KOG0120|consen 436 VRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA----NRTVVASYYD 490 (500)
T ss_pred eeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC----CcEEEEEecC
Confidence 999999888 22 268999999999999999999999998 7777666544
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.64 E-value=1.3e-14 Score=105.38 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=73.2
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccc
Q 024267 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|+.|++.|++..+. ++.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~----Gr~ 105 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN----GRH 105 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 3445679999999999999999999999999999999987643 69999999999999999999999998 899
Q ss_pred eeeecCCCCC
Q 024267 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|+.+...+
T Consensus 106 l~V~~a~~~~ 115 (144)
T PLN03134 106 IRVNPANDRP 115 (144)
T ss_pred EEEEeCCcCC
Confidence 9999886543
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.1e-15 Score=119.71 Aligned_cols=79 Identities=27% Similarity=0.477 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.-+.|+|.|||+..-+-||..+|.+||.|.+|.|+.. ..+||||||+|++++||++|-+.|||..+.|++|.|..+...
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 3478999999999999999999999999999999664 578999999999999999999999999999999999988654
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=118.35 Aligned_cols=145 Identities=27% Similarity=0.454 Sum_probs=109.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++|||+|||..+|+++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..+++..|.|++|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999998854 478999999999999999999999999999999999999754
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024267 83 -GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
................. ...............+++.+++..++..++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAK------------KLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhc------------cccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 11111100000000000 00011122334567899999999999999999999999997766655544
Q ss_pred C
Q 024267 162 G 162 (270)
Q Consensus 162 ~ 162 (270)
.
T Consensus 263 ~ 263 (306)
T COG0724 263 G 263 (306)
T ss_pred C
Confidence 3
No 64
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1e-15 Score=114.85 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=68.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++||||+|++.+..|.|++.|++||+|++..++ .+++++|||||+|.+.++|..|++ -.+-.|+|++..|..+.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 689999999999999999999999999999884 468999999999999999999999 566889999999988764
No 65
>smart00362 RRM_2 RNA recognition motif.
Probab=99.62 E-value=4.8e-15 Score=94.93 Aligned_cols=71 Identities=41% Similarity=0.739 Sum_probs=65.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEE
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+|+|+|||..+++++|.++|.+||.|..+.+..+ +.++++|||+|.+.++|..|+..+++..|.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999988654 5678999999999999999999999999999999873
No 66
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=3.9e-15 Score=122.70 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCH--HHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA--RDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~--~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
....+||||||++.++++||..+|..||.|..|.|+.... +|||||+|.+. .++.+||..|||..|.|+.|+|..++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 3457899999999999999999999999999999975433 99999999987 78999999999999999999999987
Q ss_pred C
Q 024267 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 67
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=1.3e-13 Score=109.78 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=70.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..|||..+-++.+++||+.+|+.||+|..|.+.. ...++||+||+|.+..+-..|+..||=+.|+|+.|+|..+...
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 5799999999999999999999999999999944 3578999999999999999999999999999999999877644
No 68
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=3.2e-15 Score=102.30 Aligned_cols=78 Identities=26% Similarity=0.418 Sum_probs=72.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...|||+++-..+|+++|...|..||+|++|++. .+|-.+|||+|+|++.++|++|+..|||..|.|++|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 4579999999999999999999999999999994 4677899999999999999999999999999999999999976
Q ss_pred C
Q 024267 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 5
No 69
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.9e-15 Score=119.59 Aligned_cols=82 Identities=24% Similarity=0.383 Sum_probs=76.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.|.+.|||..|++-+|++||.-+|+.||.|..|.++. ++.+..||||+|.+.++|++|.-.|++..|+++.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 5788999999999999999999999999999999954 6889999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024267 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
+....
T Consensus 317 QSVsk 321 (479)
T KOG0415|consen 317 QSVSK 321 (479)
T ss_pred hhhhh
Confidence 87643
No 70
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=4.8e-14 Score=109.29 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=70.4
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCccccccee
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+-++|||.-|++++++..|+..|+.||+|..+.++.+..+ |||||+|++..++..|.+..+|.+|+ ++.|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id----grri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID----GRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec----CcEEE
Confidence 34589999999999999999999999999999999988554 69999999999999999999999998 88888
Q ss_pred eecCC
Q 024267 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|+...
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 87765
No 71
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.57 E-value=4.4e-13 Score=107.07 Aligned_cols=189 Identities=14% Similarity=0.116 Sum_probs=136.9
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.+.++|-+|... ++.+.|..+|..||.|..|+++.+. .|.|.|++.++.+.+.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 56789999999775 8899999999999999999998764 58899999999999999999999999999999999876
Q ss_pred CCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEee
Q 024267 83 GSGRGPS---SSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSR 158 (270)
Q Consensus 83 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~ 158 (270)
.--.... ..+....+..........-..+.++.++. -..+.+.|..-|.|..+||+.|.++|..-+ ....+++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNr-Iq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNR-IQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred cccccCCceecCCCCcchhhcccccccccCChhHhhccc-ccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 5222111 11111112111111111111122222222 224567899999999999999999998766 345566665
Q ss_pred CCCC--cEEEEEecChhhHHHHHHHcCCccccCcccccc
Q 024267 159 DSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 159 ~~~~--g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.+.. -.+.++|++.++|.+|+..+|...+.+....-.
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~P 480 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFP 480 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCCCCC
Confidence 5433 389999999999999999999999985444333
No 72
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.4e-15 Score=109.68 Aligned_cols=82 Identities=33% Similarity=0.517 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++||||+|...+++..|...|-+||.|.+|.+.. +++.+|||||+|...|+|..||..||+..|.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4568999999999999999999999999999999954 5789999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024267 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.+...
T Consensus 88 kP~ki 92 (298)
T KOG0111|consen 88 KPEKI 92 (298)
T ss_pred CCccc
Confidence 98643
No 73
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.55 E-value=5.6e-13 Score=108.53 Aligned_cols=74 Identities=28% Similarity=0.561 Sum_probs=65.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeec
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...++|+|.|||.+.||+.|++-|..||.|.++.|+..... .+.|.|.++++|+.|+..|+|..+. ++.|.|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks-kGVVrF~s~edAEra~a~Mngs~l~----Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS-KGVVRFFSPEDAERACALMNGSRLD----GRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc-cceEEecCHHHHHHHHHHhccCccc----Cceeeeee
Confidence 44578999999999999999999999999999998554332 5689999999999999999999998 99998875
No 74
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.55 E-value=3.6e-13 Score=108.68 Aligned_cols=189 Identities=18% Similarity=0.259 Sum_probs=130.0
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--eeEEEEecCCCCC
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGGSG 85 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~~~~~ 85 (270)
.++|+|+-+.++-|-|.++|+.||.|..|.-.. ....-.|+|+|.+++.|..|...|+|..|.. ..|+|.+++-...
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEEe-cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 478899999999999999999999998886542 2223348999999999999999999988743 4566666643211
Q ss_pred CCCCCCCCCCCCCC--CCCC---------------------CCC----CCCCC--CCCCCCCCCCCCcceEEEcCC-CCC
Q 024267 86 RGPSSSDRRGGYGG--GGAG---------------------GAG----GAGAG--AGAGRFGISRHSEYRVIVRGL-PSS 135 (270)
Q Consensus 86 ~~~~~~~~~~~~~~--~~~~---------------------~~~----~~~~~--~~~~~~~~~~~~~~~l~v~~l-~~~ 135 (270)
--.-...+..++.. .+.| +.+ ..... ...+.-..+. ....|.|.|| ++.
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~-~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS-ANVVLLVSNLNEEA 309 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCC-CceEEEEecCchhc
Confidence 00000000000000 0000 000 00000 0001111111 2567777777 578
Q ss_pred CCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+|.+.|..+|.-||.|..|+|..++.. -|+|+|.+...|+-|+..|+|..+- ++.|+|..++.
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkkd-~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrvt~SKH 372 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKKD-NALIQMSDGQQAQLAMEHLEGHKLY----GKKLRVTLSKH 372 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCCc-ceeeeecchhHHHHHHHHhhcceec----CceEEEeeccC
Confidence 899999999999999999999988763 8999999999999999999999988 89999988863
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=5.2e-14 Score=85.54 Aligned_cols=56 Identities=34% Similarity=0.584 Sum_probs=51.0
Q ss_pred HHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 23 VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 23 L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..|.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999997654 699999999999999999999999999999999985
No 76
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=8.7e-14 Score=89.50 Aligned_cols=72 Identities=38% Similarity=0.741 Sum_probs=66.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCC--CCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEe
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+|+|+|||..+++++|.++|..||.|..+.+.... .+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996543 4689999999999999999999999999999999864
No 77
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=4.9e-14 Score=89.84 Aligned_cols=68 Identities=41% Similarity=0.732 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEE
Q 024267 11 VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 11 v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
|+|||..+++++|.++|.+||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 679999999999999999999999999855 35678999999999999999999999999999999873
No 78
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.52 E-value=6.9e-14 Score=89.29 Aligned_cols=66 Identities=24% Similarity=0.460 Sum_probs=59.8
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHHcCCccccCcccccce
Q 024267 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
|||+|||.++++++|.++|+.||.|..+.+..+.. .++|||+|.+.++|++|++.|+|..+. ++.|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~----~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN----GRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC----ccCc
Confidence 79999999999999999999999999999988622 269999999999999999999999988 6555
No 79
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.49 E-value=1.7e-13 Score=94.00 Aligned_cols=80 Identities=19% Similarity=0.318 Sum_probs=73.3
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCccccc
Q 024267 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.....++.|||+++...+++++|.+.|..||+|..+++..+..+ |||+|+|++.++|+.|+..+||..+. +.
T Consensus 67 qrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll----~q 142 (170)
T KOG0130|consen 67 QRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL----GQ 142 (170)
T ss_pred ccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh----CC
Confidence 34457899999999999999999999999999999999999877 49999999999999999999999999 88
Q ss_pred ceeeecCC
Q 024267 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|++.-
T Consensus 143 ~v~VDw~F 150 (170)
T KOG0130|consen 143 NVSVDWCF 150 (170)
T ss_pred ceeEEEEE
Confidence 88888765
No 80
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.48 E-value=1.4e-11 Score=98.60 Aligned_cols=192 Identities=17% Similarity=0.159 Sum_probs=135.6
Q ss_pred CCCceEEEcCCCC--CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC--CeeEEEEe
Q 024267 4 RFSRTIYVGNLPS--DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~--~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~ 79 (270)
.++..|.++=|.+ .+|.+-|.++....|+|..|.|... +--.|+|||++.+.|++|.+.|||..|. =..|+|+|
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 4566677766654 5999999999999999999998543 2346999999999999999999998773 36899999
Q ss_pred cCCCCC-----CCCCCCCCCCC-------------------CCCCC----CCCCCCCCCC-----C--CC----------
Q 024267 80 AHGGSG-----RGPSSSDRRGG-------------------YGGGG----AGGAGGAGAG-----A--GA---------- 114 (270)
Q Consensus 80 ~~~~~~-----~~~~~~~~~~~-------------------~~~~~----~~~~~~~~~~-----~--~~---------- 114 (270)
+++... ....|.-.... +.+.. .|+..++..+ . .+
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 986531 11111000000 00000 0000000000 0 00
Q ss_pred --CCCCCCCCCcceEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcc
Q 024267 115 --GRFGISRHSEYRVIVRGLP-SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 115 --~~~~~~~~~~~~l~v~~l~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
........+++.+.|.+|. ..++-+.|..+|..||.|..|++++.+.+ .|.|++.+....+.|+..||+..+-
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g-tamVemgd~~aver~v~hLnn~~lf--- 351 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG-TAMVEMGDAYAVERAVTHLNNIPLF--- 351 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc-eeEEEcCcHHHHHHHHHHhccCccc---
Confidence 0001223456789999997 55677889999999999999999998764 9999999999999999999999887
Q ss_pred cccceeeecCC
Q 024267 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|.+|.+..++
T Consensus 352 -G~kl~v~~Sk 361 (494)
T KOG1456|consen 352 -GGKLNVCVSK 361 (494)
T ss_pred -cceEEEeecc
Confidence 8888888776
No 81
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=1.4e-13 Score=115.69 Aligned_cols=79 Identities=32% Similarity=0.579 Sum_probs=74.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.|||||||+++++++|..+|+..|.|.++++.. +|+++||||++|.++++|..|+..|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999954 5799999999999999999999999999999999999998765
Q ss_pred CC
Q 024267 84 SG 85 (270)
Q Consensus 84 ~~ 85 (270)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 82
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=4.6e-13 Score=96.91 Aligned_cols=78 Identities=21% Similarity=0.323 Sum_probs=71.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+.|||+|||.++.+.+|+++|.+||.|..|++...+. ..||||+|+++.+|+.||..-+|..++ ++.++|++.+
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd----g~rLRVEfpr 81 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD----GCRLRVEFPR 81 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC----cceEEEEecc
Confidence 47999999999999999999999999999998876554 359999999999999999999999998 9999999998
Q ss_pred CCC
Q 024267 203 RSP 205 (270)
Q Consensus 203 ~~~ 205 (270)
.-+
T Consensus 82 ggr 84 (241)
T KOG0105|consen 82 GGR 84 (241)
T ss_pred CCC
Confidence 543
No 83
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=5.4e-14 Score=112.52 Aligned_cols=189 Identities=19% Similarity=0.181 Sum_probs=126.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc-----cceEEEEEec-CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEE
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----GRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~-----G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
++.-.|.+.+||+++++.|+.++|.+- |...-+.+.. +++..|-|||.|..+++|+.||. -|...|+-+.|.+
T Consensus 159 ~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIEl 237 (508)
T KOG1365|consen 159 ENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIEL 237 (508)
T ss_pred ccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHH
Confidence 344568889999999999999999732 3333333444 78899999999999999999998 6767777776665
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcC-CeeE--E
Q 024267 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCF--A 154 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~--~ 154 (270)
..+...+-...-...... +..++. .....+.++....++.....+|.+.+||+..+.++|.++|..|. .|.. |
T Consensus 238 FRSTaaEvqqvlnr~~s~---pLi~~~-~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gV 313 (508)
T KOG1365|consen 238 FRSTAAEVQQVLNREVSE---PLIPGL-TSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGV 313 (508)
T ss_pred HHHhHHHHHHHHHhhccc---cccCCC-CCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhccccee
Confidence 433211000000000000 000000 00011111333444555578999999999999999999999886 3444 6
Q ss_pred EEeeCCC---CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecC
Q 024267 155 EVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 155 ~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
++..+.. +|-|||+|.+.++|..|..+.+++... .++|.|-..
T Consensus 314 Hmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk----~RYiEvfp~ 359 (508)
T KOG1365|consen 314 HMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMK----SRYIEVFPC 359 (508)
T ss_pred EEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc----cceEEEeec
Confidence 6666544 479999999999999999988888776 788876543
No 84
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=8.1e-14 Score=107.70 Aligned_cols=95 Identities=34% Similarity=0.599 Sum_probs=84.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..+++|+|+||.+.++.++|+..|.+||+|++|.|. ++|+||.|...++|..|+..|++.+|.|++|+|+.+...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 478999999999999999999999999999999998 789999999999999999999999999999999999888
Q ss_pred CCCCCCCCCCCCCCCCCCCC
Q 024267 84 SGRGPSSSDRRGGYGGGGAG 103 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~ 103 (270)
...++..-+..+++..+..+
T Consensus 151 lrtapgmgDq~~cyrcGkeg 170 (346)
T KOG0109|consen 151 LRTAPGMGDQSGCYRCGKEG 170 (346)
T ss_pred cccCCCCCCHHHheeccccc
Confidence 77776666666666555443
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.46 E-value=2.4e-13 Score=106.78 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=71.7
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--cEEEEEecChhhHHHHHHHcCCccccCcccccceeee
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
....+|+|.|||...-+.||+.+|.+||+|.+|+|+.+..+ ||+||+|++++||++|-++|||..+. |++|.|.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE----GRkIEVn 169 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE----GRKIEVN 169 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee----ceEEEEe
Confidence 44579999999999999999999999999999999988765 79999999999999999999999998 9999998
Q ss_pred cCC
Q 024267 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
.+.
T Consensus 170 ~AT 172 (376)
T KOG0125|consen 170 NAT 172 (376)
T ss_pred ccc
Confidence 765
No 86
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.44 E-value=8.3e-13 Score=102.69 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=68.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+|||+|||+.+++++|+++|+.||.|..+.++.+.. .|||||+|.++++|+.|+. |+|..+. ++.|.|....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~----gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV----DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC----CceEEEEecc
Confidence 36999999999999999999999999999999998864 4799999999999999995 9999998 9999998875
No 87
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.9e-13 Score=110.46 Aligned_cols=76 Identities=28% Similarity=0.513 Sum_probs=70.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCCCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||.||+.++|+|.|+++|++||.|..|+.. +-||||.|.+.++|.+||+.+||..|+|..|.|.++++....
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~ 334 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKK 334 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhh
Confidence 579999999999999999999999999999887 559999999999999999999999999999999999987544
Q ss_pred C
Q 024267 87 G 87 (270)
Q Consensus 87 ~ 87 (270)
.
T Consensus 335 k 335 (506)
T KOG0117|consen 335 K 335 (506)
T ss_pred c
Confidence 3
No 88
>smart00361 RRM_1 RNA recognition motif.
Probab=99.39 E-value=1.6e-12 Score=82.67 Aligned_cols=58 Identities=26% Similarity=0.438 Sum_probs=51.4
Q ss_pred HHHHHHHhh----cccceEEEE-Eec---C--CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEE
Q 024267 20 EYEVEDLFY----KYGRILDIE-LKI---P--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 20 ~~~L~~~F~----~~G~v~~~~-~~~---~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+++|.++|. .||.|..|. +.. + +.++|||||+|.+.++|.+|+..|||..|+|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999985 422 3 678999999999999999999999999999999986
No 89
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.39 E-value=3.8e-12 Score=83.29 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=71.5
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-cEEEEEecChhhHHHHHHHcCCccccCccccccee
Q 024267 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+...+..|||.|||..+|.+++-++|.+||.|..+.+-..+.+ |.|||.|++..+|.+|+++|.|..+. ++++.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~----~ryl~ 88 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD----NRYLV 88 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC----CceEE
Confidence 34455689999999999999999999999999999998877766 79999999999999999999999998 88888
Q ss_pred eecCC
Q 024267 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|-+..
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 87654
No 90
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=1.5e-12 Score=88.60 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=70.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCccccccee
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...++|||+||+.-+++++|-++|+++|+|..|-+-.+..+ |||||+|.+.++|+.|++-++|..+. .+.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd----dr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD----DRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc----cccee
Confidence 34589999999999999999999999999998877666554 79999999999999999999999998 99999
Q ss_pred eecCCC
Q 024267 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
++++.+
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 998874
No 91
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.38 E-value=6.8e-12 Score=94.92 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=73.7
Q ss_pred CCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCccccc
Q 024267 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
......++|.|.||+.++++.+|+++|.+||.|..+.+..+..+ |||||.|.+.++|++||..|||.-+. .-
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd----~L 259 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD----NL 259 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc----eE
Confidence 34556789999999999999999999999999999999999877 59999999999999999999999888 78
Q ss_pred ceeeecCCC
Q 024267 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.++|++++.
T Consensus 260 ILrvEwskP 268 (270)
T KOG0122|consen 260 ILRVEWSKP 268 (270)
T ss_pred EEEEEecCC
Confidence 888888764
No 92
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.37 E-value=2.9e-12 Score=81.68 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=58.3
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHHcCCccccCcccccce
Q 024267 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
|||+|||..+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|++.+++..+. ++.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~----g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID----GRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC----CEEc
Confidence 79999999999999999999999999999998865 369999999999999999999988887 6654
No 93
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=5.7e-12 Score=96.50 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=68.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecC
Q 024267 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+++|||+||++.+++++|+++|+.||+|..|+++.+... ++|||+|++++.|+.|+. |+|..|. +..|.+...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~----d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIV----DQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeC----CceEEEEeC
Confidence 3589999999999999999999999999999999988654 599999999999999995 9999998 888888776
Q ss_pred C
Q 024267 202 D 202 (270)
Q Consensus 202 ~ 202 (270)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 94
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=3.6e-11 Score=100.34 Aligned_cols=157 Identities=20% Similarity=0.336 Sum_probs=109.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEe--c--C--CCCCc---EEEEEEcCHHHHHHHHHhcCCcccCCeeE
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--I--P--PRPPC---YCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~--~--~--~~~~g---~afV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (270)
-++.||||+||+++++++|...|..||.+ .+... . . ..++| |+|+.|+++.++...|..+.- ....+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 46889999999999999999999999965 22222 1 1 12455 999999999999988776543 33333
Q ss_pred EEEecCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHH-hcCC
Q 024267 76 RVELAHGGSGRGP----SSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMR-KAGD 150 (270)
Q Consensus 76 ~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~ 150 (270)
.++.+.+...... .|......+ ......+-++..+|||++||..++.++|..+|+ .||.
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~f----------------v~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg 397 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDF----------------VLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG 397 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchh----------------hhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCc
Confidence 4433332211110 010000000 000123345668999999999999999999998 6999
Q ss_pred eeEEEEeeCCC----CcEEEEEecChhhHHHHHHH
Q 024267 151 VCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 151 v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~ 181 (270)
|..+-|-.|+. .|-|-|+|.+...-.+||.+
T Consensus 398 V~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 398 VLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred eEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 99999988843 36899999999999999874
No 95
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.35 E-value=1.1e-12 Score=100.30 Aligned_cols=81 Identities=25% Similarity=0.554 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEe
Q 024267 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+.+.|+|||-.||.+..+.+|.++|-.||.|++.++.. ++.+++|+||.|.++.+|+.||..|||+.|+=++|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 46789999999999999999999999999999998854 578999999999999999999999999999999999998
Q ss_pred cCCC
Q 024267 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
.+++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 8766
No 96
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.35 E-value=2.7e-12 Score=111.40 Aligned_cols=77 Identities=27% Similarity=0.503 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
-.++|||||+|+.++++.||.++|+.||+|.+|.++.. +++|||.+..-++|.+|+..|++..+.++.|+|.|+..+
T Consensus 419 V~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 419 VCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred EeeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 35799999999999999999999999999999999754 899999999999999999999999999999999999876
No 97
>PLN03213 repressor of silencing 3; Provisional
Probab=99.35 E-value=6.6e-12 Score=103.98 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=70.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecCh--hhHHHHHHHcCCccccCcccccceeeec
Q 024267 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNP--EDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~--~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+.+|||+||++.+++++|..+|..||.|..++|++....|||||+|.+. .++.+|+..|||..+. |+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK----GR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK----GGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec----CceeEEee
Confidence 45799999999999999999999999999999999776668999999987 6899999999999988 99999988
Q ss_pred CC
Q 024267 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
++
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 86
No 98
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.1e-12 Score=97.59 Aligned_cols=140 Identities=20% Similarity=0.311 Sum_probs=111.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+..+||||+|+...++++-|.++|-+-|+|..+.|.. +++.+ ||||.|.++.++.-|++.+||..+.+..|+|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 5678999999999999999999999999999999954 45656 99999999999999999999999999999987643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024267 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.... .-|...++++.+...|+..|++..+.+..+.+
T Consensus 86 G~sh--------------------------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 86 GNSH--------------------------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDND 121 (267)
T ss_pred CCCc--------------------------------------------chhhhhcchhhheeeecccCCCCCcccccccc
Confidence 2200 01445566777777888888888877776655
Q ss_pred C---cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 162 G---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 ~---g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
+ +++|+.+.-......++..+.+....
T Consensus 122 ~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 122 GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 3 48888887777777777777666554
No 99
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=1.5e-12 Score=114.70 Aligned_cols=158 Identities=21% Similarity=0.364 Sum_probs=133.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||+|||...+++.+|+..|..+|.|.+|.|..+ +....||||.|.+.+.+-.|...+.+..|....+++.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46789999999999999999999999999999999543 4456799999999999999999999988876666665543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024267 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.. ......+++++|+..+....|...|..||.|..|.+-....
T Consensus 450 ~k-------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~ 492 (975)
T KOG0112|consen 450 PK-------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQP 492 (975)
T ss_pred cc-------------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCc
Confidence 21 12346899999999999999999999999998877655443
Q ss_pred CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 162 ~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|++|.|++...|+.|+..|.|..+++. .+.++|.++.
T Consensus 493 --yayi~yes~~~aq~a~~~~rgap~G~P--~~r~rvdla~ 529 (975)
T KOG0112|consen 493 --YAYIQYESPPAAQAATHDMRGAPLGGP--PRRLRVDLAS 529 (975)
T ss_pred --ceeeecccCccchhhHHHHhcCcCCCC--Cccccccccc
Confidence 999999999999999999999999854 4457777765
No 100
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.31 E-value=1.2e-11 Score=104.66 Aligned_cols=179 Identities=22% Similarity=0.337 Sum_probs=132.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc-----------c-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----------G-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~-----------G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
...+.++|++||+.++++.+..+|..- | .|..+.+. ..++||||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n---~~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLN---LEKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeec---ccccceeEEecCCCchhhhhc-ccchhhC
Confidence 456789999999999999999999753 2 35555553 347899999999999999999 9999999
Q ss_pred CeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCe
Q 024267 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (270)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v 151 (270)
|.++++.--............-. . .+...............+.+||++||..+++.++.++...||++
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~----~--------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPS----Q--------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred CCCceecccccccCCccchhhhc----c--------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 99998865443321111110000 0 00000001112233456899999999999999999999999999
Q ss_pred eEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 152 CFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
....+..+... ||||.+|.++.....|+..|||+.+. +..+.|..+-
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvvq~A~ 367 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVVQRAI 367 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc----CceeEeehhh
Confidence 98888777653 69999999999999999999999998 6777665543
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.29 E-value=2.6e-11 Score=77.30 Aligned_cols=69 Identities=25% Similarity=0.442 Sum_probs=61.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC--CCcEEEEEecChhhHHHHHHHcCCccccCcccccceee
Q 024267 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+|+|.|||..+++++|.++|..||.|..+.+..+. ..++|||+|.+.++|+.|+..+++..+. +..+.+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~----~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG----GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC----CEEEee
Confidence 48999999999999999999999999999888765 3369999999999999999999998887 666654
No 102
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.22 E-value=1.1e-10 Score=97.75 Aligned_cols=78 Identities=35% Similarity=0.609 Sum_probs=67.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+|||.|||.++++++|+++|..||.|+...|.. .++..+||||+|.+.+++..|++ -+-..|++++|.|+....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEeccc
Confidence 35699999999999999999999999999988732 24444999999999999999999 678999999999998876
Q ss_pred CC
Q 024267 83 GS 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 367 ~~ 368 (419)
T KOG0116|consen 367 GF 368 (419)
T ss_pred cc
Confidence 53
No 103
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.22 E-value=4.8e-11 Score=88.27 Aligned_cols=80 Identities=24% Similarity=0.374 Sum_probs=71.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcc-cceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEe
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~-G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.....++|..||.-+.+.+|..+|.+| |.|..+.+ ..||+++|||||+|++++.|.-|-+.||+..|.|+.|.|.+
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~v 126 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHV 126 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEE
Confidence 344568999999999999999999998 78888887 56899999999999999999999999999999999999988
Q ss_pred cCCC
Q 024267 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
..+.
T Consensus 127 mppe 130 (214)
T KOG4208|consen 127 MPPE 130 (214)
T ss_pred eCch
Confidence 6544
No 104
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.22 E-value=2.9e-10 Score=94.43 Aligned_cols=182 Identities=26% Similarity=0.345 Sum_probs=115.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEE-EEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+...|.+.+||+.||++||.+||+..-.|.. |.+.. -+.+.|-|||+|++.+.|+.||. -|...|+.+.|.|..+
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRS 179 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehh
Confidence 35568999999999999999999998765555 33322 35678999999999999999999 7888889999998665
Q ss_pred CCCC---------CCC--CCCCCCCCC------CCCCC-------------CCCCC--------------CCC-------
Q 024267 81 HGGS---------GRG--PSSSDRRGG------YGGGG-------------AGGAG--------------GAG------- 109 (270)
Q Consensus 81 ~~~~---------~~~--~~~~~~~~~------~~~~~-------------~~~~~--------------~~~------- 109 (270)
.-.. ... +........ +..+. .+..+ ...
T Consensus 180 s~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~ 259 (510)
T KOG4211|consen 180 SRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNY 259 (510)
T ss_pred HHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccccccccccccccccccc
Confidence 3110 000 000000000 00000 00000 000
Q ss_pred -C---CCC---CCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHH
Q 024267 110 -A---GAG---AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAI 179 (270)
Q Consensus 110 -~---~~~---~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~ 179 (270)
. ... .+....-...+..+...+||...++.++..+|+..-.+ .+++..... +|-|+|+|.+.++|..|+
T Consensus 260 ~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Am 338 (510)
T KOG4211|consen 260 PVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAM 338 (510)
T ss_pred CCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhh
Confidence 0 000 00000011123678889999999999999999887555 466655543 479999999999999998
Q ss_pred HHcCCcccc
Q 024267 180 RKLDDTEFR 188 (270)
Q Consensus 180 ~~l~g~~~~ 188 (270)
.+ ++..+.
T Consensus 339 sk-d~anm~ 346 (510)
T KOG4211|consen 339 GK-DGANMG 346 (510)
T ss_pred cc-CCcccC
Confidence 73 444444
No 105
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.20 E-value=6.5e-10 Score=86.34 Aligned_cols=79 Identities=25% Similarity=0.469 Sum_probs=71.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
...|+|.|||..++++||++||..||.+..+.++. .+.+.|.|-|.|...++|..|++.||++.|+|++|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 47899999999999999999999999888888855 5788999999999999999999999999999999999887655
Q ss_pred C
Q 024267 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 106
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=5.1e-11 Score=94.80 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=74.4
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc----EEEEEecChhhHHHHHHHcCCccccCcccc
Q 024267 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g----~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
+...++.+.|||..|.+-+++++|.-+|+.||.|..|.++++..+| ||||+|++.+++++|.-+|++..|. .
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID----D 308 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID----D 308 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec----c
Confidence 3445678999999999999999999999999999999999998886 9999999999999999999999998 8
Q ss_pred cceeeecCC
Q 024267 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|+++.
T Consensus 309 rRIHVDFSQ 317 (479)
T KOG0415|consen 309 RRIHVDFSQ 317 (479)
T ss_pred ceEEeehhh
Confidence 999887754
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=2.5e-10 Score=73.12 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=62.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHHcCCccccCcccccceeee
Q 024267 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
+|+|.|||..+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|++.+++..+. +..+.+.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~----~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG----GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEe
Confidence 489999999999999999999999999999988764 479999999999999999999999877 7776654
No 108
>smart00360 RRM RNA recognition motif.
Probab=99.18 E-value=1.9e-10 Score=73.00 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=58.6
Q ss_pred EcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHHcCCccccCcccccceee
Q 024267 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 129 v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
|.|||..+++++|+++|..||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+. +..+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~----~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD----GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC----CcEEEe
Confidence 578999999999999999999999999888765 369999999999999999999998887 666654
No 109
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.18 E-value=4.9e-11 Score=86.39 Aligned_cols=79 Identities=24% Similarity=0.354 Sum_probs=70.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHHcCCccccCcccccc
Q 024267 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
+...+.+|||+||+..++++.|.++|-+.|+|+.++++++.- .||||++|.+.++|+.|++-|+.-.+- ++.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY----grp 80 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY----GRP 80 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc----Cce
Confidence 344568999999999999999999999999999999998854 379999999999999999999987777 899
Q ss_pred eeeecCC
Q 024267 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|+|..+.
T Consensus 81 Irv~kas 87 (203)
T KOG0131|consen 81 IRVNKAS 87 (203)
T ss_pred eEEEecc
Confidence 9988775
No 110
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=91.97 Aligned_cols=77 Identities=27% Similarity=0.496 Sum_probs=68.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHh-cCCcccCCeeEEEEecCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRG-RDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~~~~~~g~~l~v~~~~~ 82 (270)
....+|||++|...+++.+|+..|.+||+|..|.+..- +++|||+|.+.++|+.|... ++...|+|.+|+|.|+.+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45689999999999999999999999999999999644 67999999999999998755 555788999999999987
Q ss_pred C
Q 024267 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 303 ~ 303 (377)
T KOG0153|consen 303 K 303 (377)
T ss_pred c
Confidence 3
No 111
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.15 E-value=1.6e-10 Score=70.04 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=49.5
Q ss_pred HHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecC
Q 024267 141 LKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 141 l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
|.++|++||.|..+.+.... .++|||+|.+.++|..|+..|||..+. ++.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 67899999999999998876 569999999999999999999999998 888988753
No 112
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.11 E-value=1.9e-11 Score=99.39 Aligned_cols=148 Identities=24% Similarity=0.387 Sum_probs=118.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC-cccCCeeEEEEecCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~~~~ 83 (270)
..+|++||.+.+++.||..+|... +--..+.+. .||+||.+.+...|.+|++.++| ..+.|+++.|.+..++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 368999999999999999999754 211223232 58999999999999999999999 6789999999988766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEE-eeCCCC
Q 024267 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV-SRDSEG 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~-~~~~~~ 162 (270)
..+ .+.+-|.|+|+...|+.|..+...||.+..|.. +.+..+
T Consensus 77 kqr-------------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et 119 (584)
T KOG2193|consen 77 KQR-------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET 119 (584)
T ss_pred HHH-------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH
Confidence 322 245789999999999999999999999988764 444444
Q ss_pred cEEEEEecChhhHHHHHHHcCCccccCcccccceeeec
Q 024267 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 163 g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
-..-|+|...+.+..|+.+++|..+. ...+.+.+
T Consensus 120 avvnvty~~~~~~~~ai~kl~g~Q~e----n~~~k~~Y 153 (584)
T KOG2193|consen 120 AVVNVTYSAQQQHRQAIHKLNGPQLE----NQHLKVGY 153 (584)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHhh----hhhhhccc
Confidence 45667888999999999999999987 44454444
No 113
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.10 E-value=3.6e-10 Score=95.40 Aligned_cols=80 Identities=26% Similarity=0.531 Sum_probs=72.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||.+|...+-..||..||++||+|+..+++. ++..++|+||++.+.++|.+||..|+.+.|+|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 357899999999999999999999999999998854 45668999999999999999999999999999999999987
Q ss_pred CCC
Q 024267 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 484 NEp 486 (940)
T KOG4661|consen 484 NEP 486 (940)
T ss_pred cCc
Confidence 653
No 114
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=1.1e-11 Score=89.51 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=69.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeec
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.-|||+|||+.+|+.||.-+|++||+|+.|.++++..+ ||||+-|++.....-|+..|||..+. ++.|+|+.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~----gRtirVDH 111 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL----GRTIRVDH 111 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec----ceeEEeee
Confidence 57999999999999999999999999999999999877 59999999999999999999999999 99999876
Q ss_pred CC
Q 024267 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 54
No 115
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.3e-10 Score=97.79 Aligned_cols=166 Identities=19% Similarity=0.167 Sum_probs=102.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
-++.+|+|-|||..++.++|.++|+.||+|..|.. +....+.+||+|.|..+|+.|++.|++..|.|+.|+......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~- 149 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGAR- 149 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCccc-
Confidence 46789999999999999999999999999999654 445589999999999999999999999999999998211110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc
Q 024267 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g 163 (270)
+.........-+..-. +........+.+ ...+++- |++.....-++.++..+|.+..-+...-. .
T Consensus 150 --~~~~~~~~~~~~~~~~-------~p~a~s~pgg~~---~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~~~~~~~~--h 214 (549)
T KOG4660|consen 150 --RAMGLQSGTSFLNHFG-------SPLANSPPGGWP---RGQLFGM-LSPTRSSILLEHISSVDGSSPGRETPLLN--H 214 (549)
T ss_pred --ccchhcccchhhhhcc-------chhhcCCCCCCc---CCcceee-eccchhhhhhhcchhccCccccccccchh--h
Confidence 1100000000000000 000000000000 1223332 77777776667777777776551111111 1
Q ss_pred EEEEEecChhhHHHHHHHcCCcccc
Q 024267 164 YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 164 ~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.-|++|.+..++..+...+ |..+.
T Consensus 215 q~~~~~~~~~s~a~~~~~~-G~~~s 238 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEPRG-GFLIS 238 (549)
T ss_pred hhhhhhccccchhhcccCC-ceecC
Confidence 5678888888885555433 44443
No 116
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.08 E-value=3.6e-10 Score=85.38 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=54.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHc
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l 182 (270)
.+|||+||+..+..+.|+.+|++||+|+.+.++.|+.+ ||+||+|.+.+.|.+|++.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC
Confidence 68999999999999999999999999999999999776 59999999999999999743
No 117
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.7e-10 Score=86.00 Aligned_cols=78 Identities=22% Similarity=0.314 Sum_probs=71.8
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeee
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.++|||++|...+++.-|...|-.||.|.++.++.+..+ ||+||+|+..++|..|++.||+.++- |+.|+|.
T Consensus 10 KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~----GrtirVN 85 (298)
T KOG0111|consen 10 KRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF----GRTIRVN 85 (298)
T ss_pred ceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc----ceeEEEe
Confidence 479999999999999999999999999999999888544 69999999999999999999999998 9999999
Q ss_pred cCCCCC
Q 024267 200 RYDRSP 205 (270)
Q Consensus 200 ~~~~~~ 205 (270)
++...+
T Consensus 86 ~AkP~k 91 (298)
T KOG0111|consen 86 LAKPEK 91 (298)
T ss_pred ecCCcc
Confidence 997543
No 118
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.02 E-value=8e-10 Score=93.26 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=74.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeec
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+.+||+|+|+++++++|.++|+..|.|..+++..|..+ ||+|++|.+.++|..|+..|||.++. ++.++|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~----gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN----GRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC----CceEEeec
Confidence 79999999999999999999999999999999999876 59999999999999999999999999 99999999
Q ss_pred CCCCCCCCC
Q 024267 201 YDRSPSRSR 209 (270)
Q Consensus 201 ~~~~~~r~r 209 (270)
+.....+.+
T Consensus 95 ~~~~~~~~~ 103 (435)
T KOG0108|consen 95 ASNRKNAER 103 (435)
T ss_pred ccccchhHH
Confidence 886555443
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.00 E-value=4.8e-11 Score=104.90 Aligned_cols=132 Identities=23% Similarity=0.278 Sum_probs=111.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.+++||.||++.+.+++|...|..+|.+..+.+. ..+..+|+|||+|..++++.+||....+++++
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g---------- 735 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG---------- 735 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh----------
Confidence 45789999999999999999999999977776663 35678999999999999999999955544444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC
Q 024267 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
+ ..++|.|+|...|.++++.+|.++|.+..+.++....
T Consensus 736 -K-----------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~ 773 (881)
T KOG0128|consen 736 -K-----------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA 773 (881)
T ss_pred -h-----------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhc
Confidence 1 3688999999999999999999999998876655544
Q ss_pred ---CcEEEEEecChhhHHHHHHHcCCcccc
Q 024267 162 ---GTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 ---~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.|.++|.|.+..+|..++..+++..+.
T Consensus 774 gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 774 GKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred cccccceeccCCCcchhhhhcccchhhhhh
Confidence 479999999999999999888887776
No 120
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.98 E-value=3.3e-09 Score=86.39 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=69.0
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC----CcEEEEEecChhhHHHHHHHcCCccccCcccccceeee
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|.++|..||.|..+.+..+.. .|+|||+|.+.++|..|+..++|..+. ++.+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~----~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE----GRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC----CceeEee
Confidence 58999999999999999999999999999998888752 369999999999999999999999998 9999998
Q ss_pred cCC
Q 024267 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 864
No 121
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.98 E-value=5.4e-09 Score=69.60 Aligned_cols=77 Identities=17% Similarity=0.204 Sum_probs=64.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhc--ccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCcccC----CeeEEE
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRV 77 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~--~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l~v 77 (270)
+||+|.|||...|.++|.+++.. .|...-+.++.+ .-+.|||||.|.+++.|....+.++|..+. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999999874 467777777543 567899999999999999999999998885 577788
Q ss_pred EecCCC
Q 024267 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.+|.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887643
No 122
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.97 E-value=9.2e-10 Score=88.97 Aligned_cols=82 Identities=24% Similarity=0.493 Sum_probs=73.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+..|||++||.++++++|++.|.+||.|..+.++.+ ..+++|+||.|.+++++.+++. +.-+.|.|+.+.|..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 568999999999999999999999999988888654 5789999999999999999999 888999999999999988
Q ss_pred CCCCCC
Q 024267 83 GSGRGP 88 (270)
Q Consensus 83 ~~~~~~ 88 (270)
+.....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 755443
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.94 E-value=1.8e-08 Score=81.44 Aligned_cols=158 Identities=19% Similarity=0.219 Sum_probs=110.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEE---EEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD---IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~---~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++..|...+||+..++.+|-.+|...-...- +-+...+.-.|.|.|.|-++|.-+.|++ -+.+.+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 56777888999999999999999975432211 1112234556899999999999999999 7889999999999766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHh-----cC--CeeE
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRK-----AG--DVCF 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~-----~g--~v~~ 153 (270)
.......-. + ++......-.+......|.+.+||+++++.++.++|.. -| .|..
T Consensus 137 ~ge~f~~ia---------g----------g~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF 197 (508)
T KOG1365|consen 137 TGEEFLKIA---------G----------GTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF 197 (508)
T ss_pred CchhheEec---------C----------CccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE
Confidence 543211100 0 00001111222233456778899999999999999962 22 3445
Q ss_pred EEEeeCCCCcEEEEEecChhhHHHHHHH
Q 024267 154 AEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 154 ~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 181 (270)
|+...++.+|.|||.|+.+++|+.|+.+
T Consensus 198 V~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 198 VTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EECCCCCcccceEEEecCHHHHHHHHHH
Confidence 5555666778999999999999999974
No 124
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.88 E-value=2.4e-08 Score=86.57 Aligned_cols=80 Identities=24% Similarity=0.380 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEE
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
..++.|||+||++.++++.|...|..||+|..++|+.. .....+|||.|-+-.+|+.|+..|+|..+.+..|++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 45688999999999999999999999999999999653 245688999999999999999999999999999999
Q ss_pred EecCCC
Q 024267 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.|++..
T Consensus 252 gWgk~V 257 (877)
T KOG0151|consen 252 GWGKAV 257 (877)
T ss_pred cccccc
Confidence 999654
No 125
>smart00361 RRM_1 RNA recognition motif.
Probab=98.86 E-value=1.4e-08 Score=64.39 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=46.9
Q ss_pred HHHHHHHHH----hcCCeeEEE-EeeCC------CCcEEEEEecChhhHHHHHHHcCCccccCcccccceee
Q 024267 138 WQDLKDHMR----KAGDVCFAE-VSRDS------EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 138 ~~~l~~~f~----~~g~v~~~~-~~~~~------~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+++|.++|. .||.|..+. +..+. ..|++||+|.+.++|..|+..|||..+. ++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~----gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD----GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEe
Confidence 567888888 999999885 44433 2379999999999999999999999998 777654
No 126
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.83 E-value=9.3e-09 Score=82.94 Aligned_cols=172 Identities=20% Similarity=0.262 Sum_probs=128.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCC-cccCCeeEEEEec
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~ 80 (270)
..+++|++++...+.+.++..+|..+|.+....+ .....+++++.|.|...+.+..|+. +.+ ..+.+..+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 3678999999999999989999999997766665 2345678999999999999999999 555 4666666655544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEE-EcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC
Q 024267 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI-VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
............ .....+..++| |.+|+..++.++|..+|..+|.|..+.+...
T Consensus 166 ~~~~~~~~n~~~-------------------------~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 166 TRRGLRPKNKLS-------------------------RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred ccccccccchhc-------------------------ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 433211110000 11112224555 9999999999999999999999999999888
Q ss_pred CCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCCCCCC
Q 024267 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSR 207 (270)
Q Consensus 160 ~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~r 207 (270)
..+ +++||.|.....+..++.. +...+. +..+.+.+....+..
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIG----GRPLRLEEDEPRPKS 267 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCccc----CcccccccCCCCccc
Confidence 776 4999999999999999886 666666 777878777654443
No 127
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.83 E-value=3.5e-08 Score=83.69 Aligned_cols=79 Identities=27% Similarity=0.361 Sum_probs=70.8
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccce
Q 024267 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+.+|+|.+|...+-..+|+.+|++||.|+-.+++.+... .|+||++.+.++|.++|..||.+++. ++.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH----GrmI 477 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH----GRMI 477 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc----ceee
Confidence 345679999999999999999999999999999999988655 39999999999999999999999998 8888
Q ss_pred eeecCCC
Q 024267 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..++.
T Consensus 478 SVEkaKN 484 (940)
T KOG4661|consen 478 SVEKAKN 484 (940)
T ss_pred eeeeccc
Confidence 8877663
No 128
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.79 E-value=9.6e-09 Score=80.13 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+...|||+|+...+|.+++...|+.||.|..+.|.. .+.++|||||+|.+.+.+..|+. |++..|.|+.+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4678999999999999999999999999998777743 45689999999999999999999 9999999999999987
Q ss_pred CCC
Q 024267 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 755
No 129
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.78 E-value=3.5e-08 Score=75.13 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=61.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+||++||+.+.+.+|..+|..||.+..+.+.. +|+||+|++..+|..|+..+|+..+. +-.+.++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~----~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELC----GERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceec----ceeeeeeccc
Confidence 4689999999999999999999999999988777 48999999999999999999999998 4445555555
No 130
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.76 E-value=6.4e-08 Score=61.32 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=49.2
Q ss_pred ceEEEcCCCCCCCHHH----HHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 7 RTIYVGNLPSDIREYE----VEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~----L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..|+|.|||.+..... |.+|+..|| .|..| . .+.|+|.|.+++.|..|++.|+|-.+.|.+|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4699999999987766 566777887 67666 2 4789999999999999999999999999999999975
Q ss_pred CC
Q 024267 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 131
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.76 E-value=5.3e-08 Score=73.55 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=67.1
Q ss_pred ceEEEcCCCCCCCHHHHHH----HHHhcCCeeEEEEeeC-CCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeee
Q 024267 125 YRVIVRGLPSSASWQDLKD----HMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~----~f~~~g~v~~~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.+|||.||+..+..++|+. +|++||.|..|..... +..|-|||.|.+.+.|..|+..|+|..+- |..+++.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy----gK~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY----GKPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc----Cchhhee
Confidence 4999999999999999887 9999999999887754 44589999999999999999999999998 8888888
Q ss_pred cCCC
Q 024267 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+++.
T Consensus 86 yA~s 89 (221)
T KOG4206|consen 86 YAKS 89 (221)
T ss_pred cccC
Confidence 8863
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.68 E-value=1.8e-07 Score=81.20 Aligned_cols=188 Identities=11% Similarity=-0.033 Sum_probs=121.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.+.+-+.+.+.++...|++++|... .|....|.+ .+...|.++|+|..+.++.+|++ -|.+.+-.+.+.|..+-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 45677888999999999999999653 244444422 23336889999999999999999 67777888888887664
Q ss_pred CCCCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeE-E
Q 024267 82 GGSGRGPSSSDRRG------GYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-A 154 (270)
Q Consensus 82 ~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~ 154 (270)
...-.......... ...+...+...+.. ........+...+.+|||..||..+++.++.+.|.....|++ |
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~--~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I 465 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMV--RPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFI 465 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCccccc--CCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhhee
Confidence 43211111100000 00000000000000 011112345566789999999999999999999998877766 6
Q ss_pred EEeeCCC---CcEEEEEecChhhHHHHHHHcCCccccCcccccceeeec
Q 024267 155 EVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 155 ~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+...+. .+.|||.|..++.+..|...-+...+. .+.|+|..
T Consensus 466 ~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G----~r~irv~s 510 (944)
T KOG4307|consen 466 ELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG----HRIIRVDS 510 (944)
T ss_pred EeccCCcccccchhhheeccccccchhhhcccccccC----ceEEEeec
Confidence 6554443 358999999998888887655555444 55566543
No 133
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.60 E-value=8e-08 Score=73.60 Aligned_cols=159 Identities=16% Similarity=0.242 Sum_probs=111.8
Q ss_pred EEEcCCCCCCCHHH-H--HHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 9 IYVGNLPSDIREYE-V--EDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 9 l~v~nl~~~~t~~~-L--~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+++++-..+.++- | ...|+.+-......+.. .+.-.+++|+.|.....-.++...-++..++-..|++.-...
T Consensus 99 p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts- 177 (290)
T KOG0226|consen 99 PFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS- 177 (290)
T ss_pred ccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc-
Confidence 44555555554444 3 56676665555444433 345678999999988888888776666666655544332211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-
Q 024267 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
|... ....-...+..||.+.|...++++.|...|.+|-.....+++++..+
T Consensus 178 ------wedP----------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTg 229 (290)
T KOG0226|consen 178 ------WEDP----------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTG 229 (290)
T ss_pred ------cCCc----------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhcccccccccc
Confidence 1100 11122334579999999999999999999999998888888888766
Q ss_pred ---cEEEEEecChhhHHHHHHHcCCccccCcccccceeeec
Q 024267 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 163 ---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
||+||.|.++.++..|+.+|+|+.++ .+.|.+..
T Consensus 230 KSkgygfVSf~~pad~~rAmrem~gkyVg----srpiklRk 266 (290)
T KOG0226|consen 230 KSKGYGFVSFRDPADYVRAMREMNGKYVG----SRPIKLRK 266 (290)
T ss_pred ccccceeeeecCHHHHHHHHHhhcccccc----cchhHhhh
Confidence 59999999999999999999999998 66665543
No 134
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.57 E-value=6e-08 Score=72.83 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=54.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
-||||.||.+++|+++|+++|+.|-....++|...+. ...|||+|.+.+.|..||..|+|..|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g-~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGG-MPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCC-cceEeecHHHHHHHHHHHHHhhccee
Confidence 5799999999999999999999998777777754332 56899999999999999999998776
No 135
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.52 E-value=3.3e-07 Score=80.50 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=68.3
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..+|||++|+..+++.||..+|+.||.|..|.++... ++|||.+....+|.+|+.+|.+..+. ...|++.++-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~----~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVA----DKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhccccc----ceeeEEeeecc
Confidence 4699999999999999999999999999998887765 59999999999999999999988887 88888888765
Q ss_pred CC
Q 024267 204 SP 205 (270)
Q Consensus 204 ~~ 205 (270)
..
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 43
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.52 E-value=4.4e-07 Score=70.78 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=66.5
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHHcCCccccCcccccceeeec
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...|+|.|||+.++++||+++|..||.+..+-+..+..+ |.|-|.|...++|..|++.++|..++ +..+.+..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld----G~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD----GRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC----CceeeeEE
Confidence 378999999999999999999999999988888888776 79999999999999999999997777 67776655
Q ss_pred CC
Q 024267 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 44
No 137
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.48 E-value=4.5e-07 Score=61.95 Aligned_cols=70 Identities=13% Similarity=0.296 Sum_probs=44.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC-----cccCCeeEEEEe
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-----YNFDGCRLRVEL 79 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-----~~~~g~~l~v~~ 79 (270)
+.|+|.+++..++-++|.++|+.||.|..|.+... -..|||.|.++++|+.|+..+.. ..|.+..+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~v 76 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEV 76 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEE
Confidence 57899999999999999999999999999988643 35799999999999999887643 356666666654
No 138
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.48 E-value=1.9e-07 Score=71.54 Aligned_cols=78 Identities=18% Similarity=0.322 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.-.||-|.|..+++++.|-..|.+|-.....++ ..+++++||+||-|.++.++..|+..|+|..++.++|++..+
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS 267 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKS 267 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhh
Confidence 34567999999999999999999999876655555 457899999999999999999999999999999999987644
Q ss_pred C
Q 024267 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 268 ~ 268 (290)
T KOG0226|consen 268 E 268 (290)
T ss_pred h
Confidence 3
No 139
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.42 E-value=1e-06 Score=70.64 Aligned_cols=79 Identities=19% Similarity=0.177 Sum_probs=65.4
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeee
Q 024267 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
....-.+|||++|...+++.+|+++|.+||+|..+.+.... ++|||+|.+.+.|+.|.++.-...+- .|.++.+.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI---~G~Rl~i~ 298 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVI---NGFRLKIK 298 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeee---cceEEEEE
Confidence 33445799999999999999999999999999999887765 49999999999999998776554332 38888888
Q ss_pred cCCC
Q 024267 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+...
T Consensus 299 Wg~~ 302 (377)
T KOG0153|consen 299 WGRP 302 (377)
T ss_pred eCCC
Confidence 7654
No 140
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=2.5e-07 Score=69.37 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=61.6
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC--cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.....+|||.|+...++++-|.++|-..|+|..+.|..+... .||||.|+++....-|++.+||-.+-
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 345689999999999999999999999999999999887665 49999999999999999999998876
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.36 E-value=5.9e-06 Score=55.16 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=62.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhc--CCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceee
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+|.|.|+|...+.++|.+++... |....+.++.|-.+ |||||.|.+++.|..-.+.++|..+..-...+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999988653 56777788777543 799999999999999999999999874444555555
Q ss_pred ecC
Q 024267 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
.++
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 554
No 142
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.36 E-value=2.1e-06 Score=64.03 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=58.0
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 123 SEYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...-+||..+|..+.+.++..+|.++ |.|..+.+.++..+ |||||+|++++.|.-|.+.||+..+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 34578999999999999999999998 67777777677665 49999999999999999999999987
No 143
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.34 E-value=5e-07 Score=69.58 Aligned_cols=63 Identities=22% Similarity=0.291 Sum_probs=52.4
Q ss_pred HHHHHHhh-cccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 21 YEVEDLFY-KYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~L~~~F~-~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+||...|+ +||+|+++.+-. .....|.+||.|..+++|++|++.||+..|.|++|..+++.-.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 45555566 899999997732 2356899999999999999999999999999999999987543
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.34 E-value=1.7e-05 Score=67.08 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=61.1
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCC----CCcEEEEEecChhhHHHHHHHcCCccccCcccccceee
Q 024267 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
....|||.|||.++++++|+++|..||.|....|..-. ...||||+|.+.+.++.|+.+- -..++ ++.+.|
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig----~~kl~V 361 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG----GRKLNV 361 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC----CeeEEE
Confidence 34459999999999999999999999999886665532 2259999999999999999865 33444 788888
Q ss_pred ecCCC
Q 024267 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
+..+.
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 77653
No 145
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.33 E-value=7.4e-07 Score=75.67 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=61.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCccccccee
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|+|.|||..++.++|..+|+.||+|..+..-.... +.+||+|.+..+|+.|+++|++.++. +..|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-~~~~v~FyDvR~A~~Alk~l~~~~~~----~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-GIVFVEFYDVRDAERALKALNRREIA----GKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-ceEEEEEeehHhHHHHHHHHHHHHhh----hhhhc
Confidence 3457999999999999999999999999999865544433 59999999999999999999999998 55554
No 146
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.33 E-value=3.4e-08 Score=79.95 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=54.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
++|+|++|+..+...+|.++|..+|+|....+.. +....+|.|+|....+...|+. ++|..+.
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 6899999999999999999999999998877743 2335688999999999999999 7777665
No 147
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.31 E-value=1.8e-06 Score=75.37 Aligned_cols=83 Identities=16% Similarity=0.166 Sum_probs=68.9
Q ss_pred CCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC-------cEEEEEecChhhHHHHHHHcCCccc
Q 024267 115 GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 115 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-------g~~fv~f~~~~~a~~a~~~l~g~~~ 187 (270)
+.+....+...+|||+||++.++++.|...|..||+|..++++..... .++||.|-+..+|+.|++.|+|..+
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv 244 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIV 244 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceee
Confidence 334444556789999999999999999999999999999999876432 4999999999999999999999988
Q ss_pred cCcccccceeeecC
Q 024267 188 RNPWARGRITVKRY 201 (270)
Q Consensus 188 ~~~~~~~~i~v~~~ 201 (270)
. ...+++.+.
T Consensus 245 ~----~~e~K~gWg 254 (877)
T KOG0151|consen 245 M----EYEMKLGWG 254 (877)
T ss_pred e----eeeeeeccc
Confidence 7 555555544
No 148
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.30 E-value=7.1e-06 Score=52.20 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=47.4
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHHhcC-CeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeee
Q 024267 125 YRVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..|+|.|||.+.+... |++++..+| .|..+ . ++.|+|.|.+.+.|..|++.|+|..+- |..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVf----G~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVF----GNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS----SS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhcccccc----cceEEEE
Confidence 4799999999999876 466777776 66554 2 248999999999999999999999998 9999998
Q ss_pred cCCC
Q 024267 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8753
No 149
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.27 E-value=9.4e-07 Score=71.28 Aligned_cols=81 Identities=28% Similarity=0.385 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEE--------EEE---ecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~--------~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
..+-+|||.+||..++.++|..+|.+||.|.. |.| +.|+.+++-|.|.|.++..|+.|+.-+++..+.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 45678999999999999999999999997732 333 4577899999999999999999999999999999
Q ss_pred eeEEEEecCCCC
Q 024267 73 CRLRVELAHGGS 84 (270)
Q Consensus 73 ~~l~v~~~~~~~ 84 (270)
.+|+|-.+....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998887654
No 150
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.26 E-value=5.8e-06 Score=66.34 Aligned_cols=76 Identities=28% Similarity=0.450 Sum_probs=67.2
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCC---cEEEEEecChhhHHHHHHHcCCccccCcc
Q 024267 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
.+..|||.|||.++|.+++.++|+++|-|.. |++..+..+ |-|++.|-..++..-|++.|++..+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r--- 209 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR--- 209 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc---
Confidence 3457999999999999999999999997643 777777665 68999999999999999999999999
Q ss_pred cccceeeecCC
Q 024267 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|..++|..++
T Consensus 210 -g~~~rVerAk 219 (382)
T KOG1548|consen 210 -GKKLRVERAK 219 (382)
T ss_pred -CcEEEEehhh
Confidence 9999998876
No 151
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.18 E-value=5.4e-06 Score=49.02 Aligned_cols=53 Identities=28% Similarity=0.534 Sum_probs=43.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHH
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
++.|-|.+.++...+.. ...|..||+|.++.+. ......||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~~~v-l~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEEV-LEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHHH-HHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 46789999998877554 5588889999998885 23678999999999999985
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.15 E-value=1.4e-06 Score=66.98 Aligned_cols=69 Identities=17% Similarity=0.294 Sum_probs=59.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-----------CCCC----cEEEEEEcCHHHHHHHHHhcCCccc
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----------PRPP----CYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-----------~~~~----g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
+-.||+++||+.+.+.-|+++|++||.|-.|.+... +.+. .-|+|+|.+...|......||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 457999999999999999999999999999999331 1222 2478999999999999999999999
Q ss_pred CCee
Q 024267 71 DGCR 74 (270)
Q Consensus 71 ~g~~ 74 (270)
+|++
T Consensus 154 ggkk 157 (278)
T KOG3152|consen 154 GGKK 157 (278)
T ss_pred CCCC
Confidence 9976
No 153
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.15 E-value=3.3e-06 Score=68.34 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=70.8
Q ss_pred CCCceEE-EcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEe
Q 024267 4 RFSRTIY-VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~-v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.++.++| |++|+.+++.++|...|..+|.|..+.+.. ++.++|||||.|.....+..|+.. +...+++.++.+.+
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 4566677 999999999999999999999999999943 578899999999999999999996 88999999999998
Q ss_pred cCCC
Q 024267 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
....
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 8765
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.15 E-value=5.4e-06 Score=56.65 Aligned_cols=59 Identities=27% Similarity=0.503 Sum_probs=40.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCc
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 185 (270)
+.|.|.+++..++.++|++.|+.||.|.+|.+..+.. .|||.|.+++.|+.|+.++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999998887654 8999999999999999877554
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.11 E-value=9.2e-06 Score=64.99 Aligned_cols=76 Identities=22% Similarity=0.424 Sum_probs=61.1
Q ss_pred ceEEEcCCCCCCCHHH------HHHHhhcccceEEEEEec-CC--C-CCc-E-EEEEEcCHHHHHHHHHhcCCcccCCee
Q 024267 7 RTIYVGNLPSDIREYE------VEDLFYKYGRILDIELKI-PP--R-PPC-Y-CFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~------L~~~F~~~G~v~~~~~~~-~~--~-~~g-~-afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.-|||-+||+.+..|+ =.++|.+||.|..|.+.. +. . ..+ + .||+|.+.|+|..||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999999887777 256999999999999832 21 1 111 1 499999999999999999999999999
Q ss_pred EEEEecCC
Q 024267 75 LRVELAHG 82 (270)
Q Consensus 75 l~v~~~~~ 82 (270)
|+..|...
T Consensus 195 lkatYGTT 202 (480)
T COG5175 195 LKATYGTT 202 (480)
T ss_pred EeeecCch
Confidence 99988753
No 156
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.07 E-value=1.8e-05 Score=69.16 Aligned_cols=75 Identities=20% Similarity=0.318 Sum_probs=64.4
Q ss_pred CCc-eEEEcCCCCCCCHHHHHHHhhcccce-EEEEE--ecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEe
Q 024267 5 FSR-TIYVGNLPSDIREYEVEDLFYKYGRI-LDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~~~-~l~v~nl~~~~t~~~L~~~F~~~G~v-~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+.+ .|-+.|+|++++-+||.+||..|-.+ .+|.+ ..++...|-|.|.|++.++|..|...|++..|..++|.+..
T Consensus 865 pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 865 PGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 444 78899999999999999999999744 34444 33578899999999999999999999999999999998864
No 157
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.00 E-value=4.5e-05 Score=59.76 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=66.3
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCccccccee
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+||+|+...++.++++.+|+.||.|..+.+..+... ||+||+|.+.+.++.|+. |+|..+. +..+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~----~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP----GPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc----cccce
Confidence 34578999999999999999999999999988888777655 599999999999999999 9999998 77777
Q ss_pred eecCC
Q 024267 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
+....
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 66554
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.97 E-value=2e-05 Score=65.09 Aligned_cols=73 Identities=27% Similarity=0.230 Sum_probs=58.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCC--------C--------CCcEEEEEEcCHHHHHHHHHhcCCc
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--------R--------PPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~--------~--------~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
++++|.+.|||.+-.-+.|.+||..+|.|..|.|...+ . .+-+|||+|...+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 78999999999998889999999999999999995431 1 1456999999999999999977654
Q ss_pred ccCCeeEEE
Q 024267 69 NFDGCRLRV 77 (270)
Q Consensus 69 ~~~g~~l~v 77 (270)
.-.-.-|+|
T Consensus 310 ~~wr~glkv 318 (484)
T KOG1855|consen 310 QNWRMGLKV 318 (484)
T ss_pred hhhhhcchh
Confidence 433333333
No 159
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.95 E-value=1.1e-05 Score=69.29 Aligned_cols=77 Identities=12% Similarity=0.228 Sum_probs=65.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhh-cccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc---CCeeEEEEe
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~ 79 (270)
..++.|+|.||-.-+|.-+|+.|+. .+|.|.++.| .+-+..|||.|.+.++|......|||..| +++.|.|.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm---DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM---DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHH---HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 6778877744 12266799999999999999999999888 678899998
Q ss_pred cCCC
Q 024267 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8643
No 160
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.93 E-value=2.5e-05 Score=66.71 Aligned_cols=75 Identities=25% Similarity=0.392 Sum_probs=59.6
Q ss_pred CceEEEcCCCCCCC------HHHHHHHhhcccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhcCCcccC-CeeEE
Q 024267 6 SRTIYVGNLPSDIR------EYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLR 76 (270)
Q Consensus 6 ~~~l~v~nl~~~~t------~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~ 76 (270)
...|+|.|+|.--. ..-|..+|+++|+|..+.+.. .+..+||.|++|++..+|+.|++.|||..|+ ...+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 35789999987522 223677999999999999864 3678999999999999999999999998885 56666
Q ss_pred EEec
Q 024267 77 VELA 80 (270)
Q Consensus 77 v~~~ 80 (270)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6443
No 161
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.90 E-value=9.2e-05 Score=49.82 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=53.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEe----------cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCe
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK----------IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~----------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
...+.|.|-+.|+.. ...|.+.|++||.|.+..-. ......+...|.|.++.+|.+||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 456789999999884 46778899999999887510 012335788999999999999999 999999886
Q ss_pred eE-EEEecC
Q 024267 74 RL-RVELAH 81 (270)
Q Consensus 74 ~l-~v~~~~ 81 (270)
.| -|.++.
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 54 466653
No 162
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.88 E-value=6e-05 Score=58.35 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=45.9
Q ss_pred HHHHHHHH-hcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecC
Q 024267 139 QDLKDHMR-KAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 139 ~~l~~~f~-~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
++|...|+ +||+|..+.+-.+... |-+||.|...++|+.|++.||+..+. +..|.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc----CCcceeeec
Confidence 45555565 8999988766554332 58999999999999999999999998 777765443
No 163
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.88 E-value=9.8e-05 Score=52.69 Aligned_cols=74 Identities=20% Similarity=0.277 Sum_probs=53.0
Q ss_pred CCCceEEEcCCC-----CCCCHH----HHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCee
Q 024267 4 RFSRTIYVGNLP-----SDIREY----EVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~~~~l~v~nl~-----~~~t~~----~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.+.-||.|.=+. ...-++ +|.+.|..||+|.=+++.. +.-+|+|.+-++|.+|+. |+|..+.|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 455667766554 123333 6788899999998887763 458999999999999999 9999999999
Q ss_pred EEEEecCCC
Q 024267 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|+|....+.
T Consensus 99 l~i~LKtpd 107 (146)
T PF08952_consen 99 LKIRLKTPD 107 (146)
T ss_dssp EEEEE----
T ss_pred EEEEeCCcc
Confidence 999886543
No 164
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.82 E-value=1.9e-05 Score=63.52 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=62.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhccc--ceEEEEEe---cCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G--~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++|||||-+.+|++||.+.+...| .|.++++. ..|.++|||+|...+..+.++.++.|....|+|+.-.|-..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4699999999999999999887666 44455443 35789999999999999999999999999999988777554
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.74 E-value=0.00014 Score=56.33 Aligned_cols=101 Identities=26% Similarity=0.263 Sum_probs=78.8
Q ss_pred HHHHHHHhcCCcccCCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCC
Q 024267 57 DAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA 136 (270)
Q Consensus 57 ~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~ 136 (270)
-|..|-..|++.+..|+.|.|.|+... .|||.||..-+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a------------------------------------------~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA------------------------------------------ELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc------------------------------------------eEEEEecchhh
Confidence 356666779999999999999998643 79999999999
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCC---CcEEEEEecChhhHHHHHHHcCCccccCcccccceeee
Q 024267 137 SWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+.+.+.|+.||+|....+..|.. ++-++|.|...-.|.+|+..+.-.-+.....+...-|.
T Consensus 44 sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 44 SNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 9999999999999998866555543 36899999999999999988754444433334444333
No 166
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00015 Score=61.60 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=54.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhh-cccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHh
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRG 64 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~-~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~ 64 (270)
++.+|||||+||.-++.++|-.+|. -||.|..+-|-.+ +-++|-|=|+|.+..+-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 7889999999999999999999999 7999999888544 34689999999999999999983
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.67 E-value=0.00015 Score=42.84 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=41.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHH
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAI 179 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~ 179 (270)
..|-|.|.+....+. +..+|..||+|..+.+.... ...+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~--~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPEST--NWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCC--cEEEEEECCHHHHHhhC
Confidence 357788888776644 55589999999988777333 49999999999999985
No 168
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.55 E-value=0.00012 Score=65.92 Aligned_cols=79 Identities=23% Similarity=0.330 Sum_probs=70.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--eeEEEEec
Q 024267 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~ 80 (270)
..+++.+||++|.+.+....|...|..||.|..|.+-.. .-||+|.|++...|+.|++.|-|..|+| +.|.|.++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla 528 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLA 528 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCcccccccc
Confidence 357889999999999999999999999999999888543 5799999999999999999999999975 77999988
Q ss_pred CCCC
Q 024267 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 529 ~~~~ 532 (975)
T KOG0112|consen 529 SPPG 532 (975)
T ss_pred cCCC
Confidence 7653
No 169
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.51 E-value=0.00023 Score=63.95 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=68.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...|+|.|+|+..|.++|+.+|..+|.+.++.+ ...|+++|.|||.|.++.+|..++...+...+.-..+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 356899999999999999999999999999887 44689999999999999999999998888888877788877665
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.46 E-value=0.00065 Score=55.28 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=63.2
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeE--------EEEeeCCCC----cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.....+|||-+||..+++.+|.++|.++|.|.. +++.++..+ +-|.|.|++...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445679999999999999999999999987643 444444433 59999999999999999999999998
Q ss_pred CcccccceeeecCC
Q 024267 189 NPWARGRITVKRYD 202 (270)
Q Consensus 189 ~~~~~~~i~v~~~~ 202 (270)
+..|+|..+.
T Consensus 143 ----gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 ----GNTIKVSLAE 152 (351)
T ss_pred ----CCCchhhhhh
Confidence 5666665544
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.45 E-value=0.00041 Score=54.78 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=49.9
Q ss_pred HHHHHHHhhcccceEEEEEecCC----CCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 20 EYEVEDLFYKYGRILDIELKIPP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++.+...+||.|..|.|+... .-.--.||+|...++|.+|+-.|||.+|+|+.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 34566778899999999885532 112347999999999999999999999999999987754
No 172
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.00052 Score=58.97 Aligned_cols=66 Identities=27% Similarity=0.383 Sum_probs=55.8
Q ss_pred CcceEEEcCCCCCCCH------HHHHHHHHhcCCeeEEEEeeCCCC---cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 123 SEYRVIVRGLPSSASW------QDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~------~~l~~~f~~~g~v~~~~~~~~~~~---g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
....|+|.|+|.-... ..|..+|+++|++..+.++.+..+ ||.|++|++..+|+.|++.|||..+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 4578999999854433 246789999999999999877665 59999999999999999999999997
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.37 E-value=0.0007 Score=54.54 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=60.2
Q ss_pred CcceEEEcCCCCCCCHHHH------HHHHHhcCCeeEEEEeeCCCC-----c--EEEEEecChhhHHHHHHHcCCccccC
Q 024267 123 SEYRVIVRGLPSSASWQDL------KDHMRKAGDVCFAEVSRDSEG-----T--YGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l------~~~f~~~g~v~~~~~~~~~~~-----g--~~fv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
..+-+||.+|++.+..+++ .++|.+||.|..+.+.+.... + -.||+|.+.++|..||.+++|..++
T Consensus 113 QKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D- 191 (480)
T COG5175 113 QKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD- 191 (480)
T ss_pred ecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc-
Confidence 3468999999998887762 579999999988877665422 1 3599999999999999999999988
Q ss_pred cccccceeeecC
Q 024267 190 PWARGRITVKRY 201 (270)
Q Consensus 190 ~~~~~~i~v~~~ 201 (270)
|+.|+..+.
T Consensus 192 ---Gr~lkatYG 200 (480)
T COG5175 192 ---GRVLKATYG 200 (480)
T ss_pred ---CceEeeecC
Confidence 777775543
No 174
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.29 E-value=2.7e-05 Score=67.86 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=64.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.-+|||+||...+..+-+..+...||-|..+.... |||+.|..+..+..|+..|+-..++|+.+.+....
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 4567999999999999999999999999998887753 99999999999999999999999999998887653
No 175
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.28 E-value=0.0006 Score=56.67 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=54.8
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC---CCC--------------cEEEEEecChhhHHHHHHHcCC
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEG--------------TYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~--------------g~~fv~f~~~~~a~~a~~~l~g 184 (270)
-+..+|.+.|||.+-..+.|.++|..+|.|..|.|... ... -+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45689999999999999999999999999999998876 211 1799999999999999998754
Q ss_pred c
Q 024267 185 T 185 (270)
Q Consensus 185 ~ 185 (270)
.
T Consensus 309 e 309 (484)
T KOG1855|consen 309 E 309 (484)
T ss_pred h
Confidence 3
No 176
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.24 E-value=0.0021 Score=41.06 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=40.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+..+|+ .|..+...||.++|+.||.|. |..+.+ .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT----TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC----CcEEEEeecHHHHHHHHHHhc
Confidence 456666 999999999999999999874 444432 469999999999999998775
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.14 E-value=0.0003 Score=54.48 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=57.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC---------c-------EEEEEecChhhHHHHHHHcCCcccc
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---------T-------YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---------g-------~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
-.||+.+||+.++..-|+++|..||.|-.|.+...... + -|+|+|.+...|......||+..|+
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~Ig 154 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPIG 154 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCccC
Confidence 58999999999999999999999999988888765432 1 5899999999999999999999998
No 178
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=97.12 E-value=0.005 Score=37.31 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=45.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhc---CCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHc
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKA---GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 182 (270)
..|+|.|+. .++.++|+.+|..| .....++++.+. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 579999985 47888999999998 245578888887 7999999999999999765
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.03 E-value=0.0024 Score=43.02 Aligned_cols=62 Identities=26% Similarity=0.330 Sum_probs=45.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEE-E----------eeCCCCcEEEEEecChhhHHHHHHHcCCcccc
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAE-V----------SRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~-~----------~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.-|.|-+.|+. ....|.++|++||.|.... + .....++...|+|.++.+|++|+. .||..+.
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 56888899888 5677889999999997764 0 112233599999999999999998 7888887
No 180
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.98 E-value=0.0029 Score=50.09 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=50.0
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCC-----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 138 WQDLKDHMRKAGDVCFAEVSRDSEG-----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~-----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
++++++.|.+||.|..|.|...+.. --.||+|...++|.+|+-.|||..|+ |+.+...+..
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG----Gr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG----GRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec----ceeeeheecc
Confidence 3467889999999998887766543 27899999999999999999999998 7777665543
No 181
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.97 E-value=0.0099 Score=40.87 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=48.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEecCCCCCc-EEEEEEcCHHHHHHHHHhcCCcccC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPC-YCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+..+.+...|..++.++|..+.+.+- .|..++|..++.+.. -+.++|.+.++|......+||..|.
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 34445555555566667776666554 677888888876444 4778999999999999999998874
No 182
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.84 E-value=0.006 Score=52.63 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=69.0
Q ss_pred CHHHHHHHHHhcCCcccCCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCC
Q 024267 54 NARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLP 133 (270)
Q Consensus 54 ~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~ 133 (270)
|.+-...+|....+..++.+-++|...... +.|+|.-||
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~kR-----------------------------------------cIvilREIp 184 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNHKR-----------------------------------------CIVILREIP 184 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCcce-----------------------------------------eEEEEeecC
Confidence 344445566666777777766666654433 789999999
Q ss_pred CCCCHHHHHHHHHh--cCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHH-------cCCcccc
Q 024267 134 SSASWQDLKDHMRK--AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK-------LDDTEFR 188 (270)
Q Consensus 134 ~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~-------l~g~~~~ 188 (270)
..+..++++.+|.. +.+++.|++..+. -=||+|++..||++|.+. ++|+.|.
T Consensus 185 ettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 185 ETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred CCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 99999999999976 6788888877665 469999999999999754 4666664
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.83 E-value=0.0091 Score=36.18 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=42.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcc---cceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKY---GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~---G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..|+|.+|. +++.+||+.+|..| .....|..+.+ .-|-|.|.+++.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 478999984 68889999999988 12456666554 24889999999999999854
No 184
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.78 E-value=0.013 Score=41.60 Aligned_cols=74 Identities=18% Similarity=0.153 Sum_probs=56.5
Q ss_pred CCCceEEEcCCCCCCCH-HH---HHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEe
Q 024267 4 RFSRTIYVGNLPSDIRE-YE---VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~-~~---L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+--||.|.=|..++.. +| +.+.++.||+|.+|.+.. +.-|.|.|.+..+|-.|+..++. ...|..+.+.|
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 34457888777666532 33 555677899999998753 66799999999999999998886 66778888887
Q ss_pred cCC
Q 024267 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
-+.
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 654
No 185
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.60 E-value=0.00094 Score=54.02 Aligned_cols=77 Identities=30% Similarity=0.534 Sum_probs=60.6
Q ss_pred ceEEEcCCCCCCCHHHHHH---HhhcccceEEEEEecCC------CCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEE
Q 024267 7 RTIYVGNLPSDIREYEVED---LFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~---~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+-+||-+|+....++.+.+ .|.+||.|..|.+..+. ..-.-++|+|...++|..||...+|+.++|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4578888988876666654 78899999999885432 11223899999999999999999999999999887
Q ss_pred EecCCC
Q 024267 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776544
No 186
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.58 E-value=0.0097 Score=45.00 Aligned_cols=63 Identities=27% Similarity=0.264 Sum_probs=46.3
Q ss_pred CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC--CcccCCeeEEEEecCCC
Q 024267 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELAHGG 83 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~~~~~ 83 (270)
-..+.|+++|..|+.+..+..... -+=..|.|.+.++|..|...|+ +..+.|..|+|.++...
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 355889999999999888877643 3458999999999999999999 89999999999998544
No 187
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.58 E-value=0.002 Score=48.49 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=50.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc-ccceE---EEEEecC-----CCCCcEEEEEEcCHHHHHHHHHhcCCcccCC--
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRIL---DIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG-- 72 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~-~G~v~---~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-- 72 (270)
.....|.|.+||+.+|++++++.++. ++.-. .+.-... .....-|||.|.+.+++......++|+.|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45678999999999999999998776 66542 2221111 1223569999999999999999999977733
Q ss_pred ---eeEEEEecCC
Q 024267 73 ---CRLRVELAHG 82 (270)
Q Consensus 73 ---~~l~v~~~~~ 82 (270)
-...|+++-.
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3455666654
No 188
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.55 E-value=0.0026 Score=49.51 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=60.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcCCcc----cCCeeEEEEec
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYN----FDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~----~~g~~l~v~~~ 80 (270)
..|+|.||+.-++.+.|.+-|+.||+|....++.+ ++..+-++|+|...-.|.+|+..+...- ..+.+.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999988766554 5677889999999999999998874322 24566666554
Q ss_pred C
Q 024267 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 189
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.53 E-value=0.0015 Score=56.56 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=58.1
Q ss_pred CCCcceEEEcCCCCCCCHHHHHHHHHhc-CCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeee
Q 024267 121 RHSEYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
....+.|+|.||-...|.-+|+.++.+- |.|....|-.-+ -.|||.|.+.++|.....+|||..+... .++.|.+.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP~s-NPK~L~ad 517 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWPPS-NPKHLIAD 517 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccCCC-CCceeEee
Confidence 3456899999999999999999999864 555554222222 2799999999999999999999887611 14555555
Q ss_pred cC
Q 024267 200 RY 201 (270)
Q Consensus 200 ~~ 201 (270)
+.
T Consensus 518 f~ 519 (718)
T KOG2416|consen 518 FV 519 (718)
T ss_pred ec
Confidence 43
No 190
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.51 E-value=0.02 Score=36.43 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=36.9
Q ss_pred CCCHHHHHHHhhccc-----ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 17 DIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+++.+|..++...+ .|-.|.+. ..|+||+-... .|..++..|++..+.|++|.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 489999999998764 56677776 46899988754 788899999999999999999864
No 191
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.49 E-value=0.0052 Score=49.63 Aligned_cols=17 Identities=18% Similarity=0.077 Sum_probs=8.8
Q ss_pred CCcEEEEEEcCHHHHHH
Q 024267 44 PPCYCFVEFENARDAED 60 (270)
Q Consensus 44 ~~g~afV~f~~~~~a~~ 60 (270)
.+.-.||.|.-+.-|-.
T Consensus 172 lRT~v~vry~pe~iACa 188 (367)
T KOG0835|consen 172 LRTDVFVRYSPESIACA 188 (367)
T ss_pred cccceeeecCHHHHHHH
Confidence 34556777664443333
No 192
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.47 E-value=0.015 Score=41.72 Aligned_cols=52 Identities=15% Similarity=0.272 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeec
Q 024267 140 DLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 140 ~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+|.+.|..||.+.-+++..+ .-+|+|.+-+.|.+|+. ++|.++. |..+.+..
T Consensus 52 ~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~----g~~l~i~L 103 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVN----GRTLKIRL 103 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEET----TEEEEEEE
T ss_pred HHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEEC----CEEEEEEe
Confidence 57788899999998888775 58999999999999998 9999998 77777654
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.27 E-value=0.015 Score=46.41 Aligned_cols=72 Identities=17% Similarity=0.247 Sum_probs=55.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCee-EEEEecCCC
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-LRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-l~v~~~~~~ 83 (270)
..|-|-++|+... ..|..+|++||.|.+.... ..-.+-+|.|.+.-+|++||. .||+.|+|-. |-|..+..+
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 4577778877644 5678899999999887554 335689999999999999999 8999998754 456665544
No 194
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.00 E-value=0.013 Score=50.64 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=55.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhc--ccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC--cccCCeeEEE
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRV 77 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~--~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v 77 (270)
.-|.|+|.-||..+-.|+++.||.. |-++++|.+... ..=||+|++..||+.|...|.. ..|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3478899999999999999999985 778899988432 2359999999999999987755 5566776654
No 195
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.91 E-value=0.0046 Score=52.26 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=64.0
Q ss_pred CCCceEEEcCCCCCC-CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCC
Q 024267 4 RFSRTIYVGNLPSDI-REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~-t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+++.|.+..+|+.+ +-++|..-|.+||.|..|.+-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|.|-++
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 456777777787774 67889999999999999988433 3468999999999988888 899999999999999876
Q ss_pred C
Q 024267 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 196
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.91 E-value=0.028 Score=47.45 Aligned_cols=67 Identities=18% Similarity=0.347 Sum_probs=58.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcc-cceEEEEEecCCCCCcE-EEEEEcCHHHHHHHHHhcCCcccCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKY-GRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~-G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
++.|.|-.+|..+|..||..|...+ -.|.+|.++.++.+..| ++|.|.+.++|....+.+||..|..
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 7889999999999999999998764 47889999888765555 6799999999999999999988853
No 197
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.86 E-value=0.044 Score=35.17 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=41.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCC
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g 184 (270)
...+|+ +|......||.++|+.||.|. |.++.+. .|||.....+.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 345554 999999999999999999986 5555554 899999999999998887754
No 198
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.82 E-value=0.0011 Score=55.09 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=66.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
-++.+.|.|||+....+.|..|+.+||.|..|....+.......-|+|...+.+..|+..|+|..+....++|.|-...
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 4577999999999999999999999999999988554433334457899999999999999999999999999876543
No 199
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.71 E-value=0.16 Score=34.94 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=47.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCc--EEEEEecChhhHHHHHHHcCCcccc
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g--~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+.+...|..++.++|..+.+.+- .|..+.++++...+ .+.++|.+.+.|.+-...+||+.+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444444555566666766666654 56678888876543 7899999999999999999999996
No 200
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.31 E-value=0.045 Score=44.45 Aligned_cols=13 Identities=0% Similarity=0.044 Sum_probs=7.2
Q ss_pred CCCCHHHHHHHHH
Q 024267 134 SSASWQDLKDHMR 146 (270)
Q Consensus 134 ~~~~~~~l~~~f~ 146 (270)
.++++++|.+++.
T Consensus 211 Fd~~k~eid~ic~ 223 (367)
T KOG0835|consen 211 FDTTKREIDEICY 223 (367)
T ss_pred cCCcHHHHHHHHH
Confidence 3456666665543
No 201
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=94.65 E-value=0.25 Score=30.51 Aligned_cols=55 Identities=20% Similarity=0.366 Sum_probs=44.6
Q ss_pred CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEE
Q 024267 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.++-+||+..+..|+ -..|.... .|| ||.|.+..+|+++....++..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~-~~~I~~d~----tGf-YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYR-WDRIRDDR----TGF-YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCC-cceEEecC----CEE-EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 478899999999997 34555543 354 89999999999999999999888777665
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.30 E-value=0.54 Score=30.84 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=45.1
Q ss_pred EEEEEcCHHHHHHHHHhcCC--cccCCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024267 48 CFVEFENARDAEDAIRGRDG--YNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (270)
|+|+|.++.-|+..+. +.. ..+++..+.|....-........ .-....+..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------------------------qv~~~vs~r 53 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKF--------------------------QVFSGVSKR 53 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEE--------------------------EEEEcccCC
Confidence 6899999999999888 444 33466666665443221111000 011123457
Q ss_pred eEEEcCCCCCCCHHHHHHH
Q 024267 126 RVIVRGLPSSASWQDLKDH 144 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~ 144 (270)
+|.|.|||..+++++|++.
T Consensus 54 tVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 54 TVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred EEEEeCCCCCCChhhheee
Confidence 8999999999999998876
No 203
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.20 E-value=0.28 Score=41.75 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=57.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCCCCc--EEEEEecChhhHHHHHHHcCCcccc
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g--~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...|.|-.+|..++-.||..++..+- .|..+.++++...+ .++|.|.+.++|....+.+||+.|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999998765 67778888876553 7999999999999999999999997
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.20 E-value=0.092 Score=39.60 Aligned_cols=67 Identities=16% Similarity=0.340 Sum_probs=45.4
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHh-cCCee---EEEEeeCCCC------cEEEEEecChhhHHHHHHHcCCccccC
Q 024267 123 SEYRVIVRGLPSSASWQDLKDHMRK-AGDVC---FAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~---~~~~~~~~~~------g~~fv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
....|.|.+||+.+|++++.+.+.. ++... .+.-..+... --|||.|.+.+++..-...++|..+.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3469999999999999999987776 55542 2221111111 279999999999999999999988873
No 205
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.09 E-value=0.036 Score=50.47 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=59.1
Q ss_pred EEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc--CCeeEEEEecCCCC
Q 024267 10 YVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVELAHGGS 84 (270)
Q Consensus 10 ~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~~~~~~ 84 (270)
++.|.+...+-.-|..+|++||.|.++....+ -..|.|+|...+.|..|++.|+|..+ -|-+.+|.+++.-+
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34455556777889999999999999888654 45799999999999999999999776 58889998887543
No 206
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=93.73 E-value=0.15 Score=41.81 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=52.6
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcC--CeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...++||+||-..+|++||.+.+...| .+.++++..+..+ |||+|...+.....+.++.|-.+.+.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 347899999999999999998887766 4555555555433 69999999999888888888777776
No 207
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.07 E-value=0.44 Score=41.86 Aligned_cols=79 Identities=23% Similarity=0.410 Sum_probs=62.3
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhhcc----cceEEEEEecC--C----------CC---------------------
Q 024267 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP--P----------RP--------------------- 44 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~-~t~~~L~~~F~~~----G~v~~~~~~~~--~----------~~--------------------- 44 (270)
+..++.|-|.||.+. +..+||.-+|+.| |.|..|.|..+ | .+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467899999999987 8999999999865 58888888331 0 11
Q ss_pred -----------------CcEEEEEEcCHHHHHHHHHhcCCcccC--CeeEEEEecC
Q 024267 45 -----------------PCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (270)
Q Consensus 45 -----------------~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~ 81 (270)
.=||.|+|.+.+.|......|+|+.|. +..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 127999999999999999999999996 5556665543
No 208
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.89 E-value=0.31 Score=34.79 Aligned_cols=61 Identities=11% Similarity=0.148 Sum_probs=45.0
Q ss_pred CcceEEEcCCCCCC----CHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCcc
Q 024267 123 SEYRVIVRGLPSSA----SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 123 ~~~~l~v~~l~~~~----~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~ 186 (270)
+-.+|.|.=|..++ +...+-..++.||+|..|...... .|.|.|.+...|-.|+.+++...
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 34577776554333 334455667889999998776543 79999999999999999987643
No 209
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=92.57 E-value=0.06 Score=43.91 Aligned_cols=65 Identities=18% Similarity=0.199 Sum_probs=52.7
Q ss_pred cceEEEcCCCCCCCHHHHH---HHHHhcCCeeEEEEeeCCC--C-----cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 124 EYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSE--G-----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~--~-----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.+-+||.+|+..+..+.+. +.|.+||.|..+.+..+.. . --++|+|...++|..||...+|..+.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 3678889999887666653 4889999999988887652 1 16899999999999999999988877
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.09 E-value=0.23 Score=44.26 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=57.7
Q ss_pred CCCCCCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCcccc
Q 024267 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+..+..++||+|+...+..+-++.+...+|.|..+.... |+|..|.....+..|+..++-..++
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCC
Confidence 34456678999999999999999999999999998887666 9999999999999999888777775
No 211
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=91.34 E-value=0.29 Score=35.82 Aligned_cols=120 Identities=18% Similarity=0.152 Sum_probs=74.8
Q ss_pred EEEcCCC--CCCCHHHHHHHhhc-ccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCCCC
Q 024267 9 IYVGNLP--SDIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSG 85 (270)
Q Consensus 9 l~v~nl~--~~~t~~~L~~~F~~-~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~ 85 (270)
..|+.+. ...+-..|.+.+.. ++....+.+..- ..++..+.|.+++++..++. .....++|..|.++.-.+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 4445442 33566667766654 233223333221 15789999999999999998 566777888888776653311
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCC-CCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 86 RGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.... .-.....=|-|.|||.. .+++-+..+.+.+|.+..+......
T Consensus 95 ~~~~-----------------------------~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSEV-----------------------------KFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred cccc-----------------------------ceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 0000 00011234667799966 5677788999999999888766544
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=91.25 E-value=0.98 Score=34.28 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=43.2
Q ss_pred CHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcC--CccccCcccccceeeecCC
Q 024267 137 SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--g~~~~~~~~~~~i~v~~~~ 202 (270)
..+.|+++|..++.+..+.....- +-..|.|.+.+.|..|...|+ +..+. +..+++-+..
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~----g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFN----GKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEET----TEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccC----CCceEEEEcc
Confidence 457899999999988877666654 378999999999999999999 88887 6667766653
No 213
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=91.24 E-value=0.47 Score=38.25 Aligned_cols=58 Identities=19% Similarity=0.303 Sum_probs=44.2
Q ss_pred EEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCcccc
Q 024267 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
|-|-++|+... .-|..+|.+||.|++.... .++++-+|.|.+.-+|.+||. .+|+.|+
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 44555655433 4577899999999765544 455699999999999999998 6888876
No 214
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.00 E-value=0.26 Score=42.17 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=55.6
Q ss_pred cceEEEcCCCCCC-CHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 124 EYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+.|-+...|..+ +.++|..+|.+||.|..|.+-... --|.|+|.+..+|-+|.. .++..|+ ++.|+|-+..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avln----nr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLN----NRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceec----CceeEEEEec
Confidence 3445555555544 567899999999999998876653 269999999999977765 7888887 8888887765
Q ss_pred C
Q 024267 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 4
No 215
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=90.23 E-value=0.23 Score=45.56 Aligned_cols=73 Identities=16% Similarity=0.130 Sum_probs=58.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCC
Q 024267 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+.++.|.+-..+-..|..+|..||.|......++-+ .|.|+|.+.+.|..|++.++|+++-. .|...+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~--~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSV--TGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccc--cCCceeEEecc
Confidence 344455556666677999999999999988877764 89999999999999999999998762 25667777665
No 216
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=90.09 E-value=0.3 Score=36.31 Aligned_cols=77 Identities=19% Similarity=0.261 Sum_probs=55.8
Q ss_pred CCCceEEEcCCCCCC--C---HHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCe-eEEE
Q 024267 4 RFSRTIYVGNLPSDI--R---EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~--t---~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l~v 77 (270)
+-.+++.+++|...+ + ......+|.+|-+...+.+.. +.+..-|.|.+++.|..|...+++..|.|+ .++.
T Consensus 8 dlp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr---sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~ 84 (193)
T KOG4019|consen 8 DLPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR---SFRRVRINFSNPEAAADARIKLHSTSFNGKNELKL 84 (193)
T ss_pred cccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH---hhceeEEeccChhHHHHHHHHhhhcccCCCceEEE
Confidence 334678888887763 2 233555777666655555542 245667899999999999999999999888 8888
Q ss_pred EecCCC
Q 024267 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.++...
T Consensus 85 yfaQ~~ 90 (193)
T KOG4019|consen 85 YFAQPG 90 (193)
T ss_pred EEccCC
Confidence 888765
No 217
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=89.96 E-value=1.9 Score=26.62 Aligned_cols=50 Identities=18% Similarity=0.200 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCcccc
Q 024267 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
-.++-++++..+..|+-. .+..+. + --||.|.+..+|+++....+|..+-
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~-t-GfYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDR-T-GFYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecC-C-EEEEEECChHHHHHHHHhcCCCEEE
Confidence 356778999999998632 222333 2 2579999999999999999998775
No 218
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=88.43 E-value=1.1 Score=36.22 Aligned_cols=171 Identities=12% Similarity=0.132 Sum_probs=98.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCC----------CCCcEEEEEEcCHHHHHHHH----HhcCC--c
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP----------RPPCYCFVEFENARDAEDAI----RGRDG--Y 68 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~----------~~~g~afV~f~~~~~a~~A~----~~l~~--~ 68 (270)
-++.|.+.||..+++--.+..-|-+||+|+.|+++... +...-+.+-|-+.+.|.... +.|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999999999996543 34567899999999988753 33333 3
Q ss_pred ccCCeeEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHH-HHHHH--
Q 024267 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQD-LKDHM-- 145 (270)
Q Consensus 69 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~-l~~~f-- 145 (270)
.+.-..|.|.+..-............... + ......-...-.....+..|.|.= ...+..++ +.+.+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~-~--------~~~~~~L~~~i~~~gATRSl~IeF-~~~~~~~dl~~~kL~f 163 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADF-S--------DYLVASLQYNIINRGATRSLAIEF-KDPVDKDDLIEKKLPF 163 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccch-h--------hHHhhhhhheeecCCcceEEEEEe-cCccchhHHHHHhhhh
Confidence 45667777776642211100000000000 0 000000001112234456677753 34443333 32222
Q ss_pred -HhcCC----eeEEEEeeCCC------CcEEEEEecChhhHHHHHHHcCCc
Q 024267 146 -RKAGD----VCFAEVSRDSE------GTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 146 -~~~g~----v~~~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~g~ 185 (270)
..-+. ++.+.++.... ..||.++|-+..-|.+.++.+...
T Consensus 164 L~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 164 LKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred hccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 22232 34455554322 249999999999999998877633
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=87.03 E-value=2 Score=34.50 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=35.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEEcCH
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
+-|+|+||+.++-..||...+...|- ...|... .+.+-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee---cCCcceeEecCCc
Confidence 45999999999999999999987763 2344443 3377899999764
No 220
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=86.41 E-value=0.7 Score=32.19 Aligned_cols=59 Identities=17% Similarity=0.229 Sum_probs=32.8
Q ss_pred eEEEcCCCCC---------CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcC-HHHHHHHHHhcCC
Q 024267 8 TIYVGNLPSD---------IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGRDG 67 (270)
Q Consensus 8 ~l~v~nl~~~---------~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~~ 67 (270)
++.|-|++.. ++.+.|.+.|..|..++-..+.....+.|+++|+|.. -.--..|+. |+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~-l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR-LEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH-HHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH-HHH
Confidence 4667788553 4667899999999887655555455668999999974 444455665 544
No 221
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=86.16 E-value=0.38 Score=39.24 Aligned_cols=7 Identities=0% Similarity=0.510 Sum_probs=2.6
Q ss_pred HHHHHHh
Q 024267 141 LKDHMRK 147 (270)
Q Consensus 141 l~~~f~~ 147 (270)
|.+-|++
T Consensus 229 Id~~ie~ 235 (453)
T KOG2888|consen 229 IDEKIEE 235 (453)
T ss_pred HHHHHHh
Confidence 3333333
No 222
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.20 E-value=3.7 Score=25.91 Aligned_cols=59 Identities=10% Similarity=0.248 Sum_probs=34.5
Q ss_pred CCCCCHHHHHHHHHhcCCe-----eEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCccccCcccccceeeec
Q 024267 133 PSSASWQDLKDHMRKAGDV-----CFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 133 ~~~~~~~~l~~~f~~~g~v-----~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
-..++..+|..++...+.+ -.+.+... |+||+-.. +.|..++..|++..+. ++.+.++.
T Consensus 10 ~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~----gk~v~ve~ 73 (74)
T PF03880_consen 10 KDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIK----GKKVRVER 73 (74)
T ss_dssp GGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SS----S----EEE
T ss_pred ccCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCC----CeeEEEEE
Confidence 3567788888888776543 34555554 88888765 4788999999999988 88887764
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=84.19 E-value=0.48 Score=37.68 Aligned_cols=67 Identities=18% Similarity=0.365 Sum_probs=46.6
Q ss_pred CCCceEEEcCCCCC------------CCHHHHHHHhhcccceEEEEEec--------CCC-----CCcE---------EE
Q 024267 4 RFSRTIYVGNLPSD------------IREYEVEDLFYKYGRILDIELKI--------PPR-----PPCY---------CF 49 (270)
Q Consensus 4 ~~~~~l~v~nl~~~------------~t~~~L~~~F~~~G~v~~~~~~~--------~~~-----~~g~---------af 49 (270)
+-..||++.+||.. -+++-|...|..||.|..|.|.. +++ ..|| ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 44578999999874 35677999999999999988832 222 2344 34
Q ss_pred EEEcCHHHHHHHHHhcCCccc
Q 024267 50 VEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~ 70 (270)
|+|...-.-..|+..|-|+.+
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 666666666677777777665
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.77 E-value=3 Score=35.17 Aligned_cols=57 Identities=12% Similarity=0.290 Sum_probs=45.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+-.+.|-|-++|.....+||...|+.|+. ..+.|+.-. ...||..|.+...|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhh
Confidence 44578999999999999999999999974 333332211 3469999999999999999
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=82.07 E-value=5.9 Score=25.77 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=41.5
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhc
Q 024267 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
-|+-.+...++..+|.+.++. || .|..|..........-|||.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 334456788999999998886 56 6777777554444556999999998888875533
No 226
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=81.20 E-value=0.76 Score=42.27 Aligned_cols=8 Identities=13% Similarity=-0.014 Sum_probs=3.9
Q ss_pred ceEEEcCC
Q 024267 125 YRVIVRGL 132 (270)
Q Consensus 125 ~~l~v~~l 132 (270)
...|++++
T Consensus 146 qR~f~gvv 153 (1194)
T KOG4246|consen 146 QRRFAGVV 153 (1194)
T ss_pred ceeeehhh
Confidence 34555544
No 227
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=80.88 E-value=7.6 Score=24.81 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=40.3
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024267 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-|+-.+...++..+|.+.++. || .|..|..........-|||.+...+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 445567889999999988886 55 66777665444444569999998888887654
No 228
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=79.38 E-value=18 Score=32.59 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=26.1
Q ss_pred CcceEEEcCCC-CCCCHHHHHHHHHhcCCeeEEEEeeCC
Q 024267 123 SEYRVIVRGLP-SSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 123 ~~~~l~v~~l~-~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
....+.|.+++ .+++.....+++.+.|++..+.+.+..
T Consensus 60 nDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 60 NDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred CCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 34677788777 445555566777889988877766643
No 229
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=78.78 E-value=5.1 Score=24.25 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=16.0
Q ss_pred HHHHHHhhcccceEEEEE
Q 024267 21 YEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~ 38 (270)
++|+++|+..|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999988777
No 230
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=76.16 E-value=3.1 Score=34.91 Aligned_cols=65 Identities=22% Similarity=0.367 Sum_probs=48.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
-+.|.|.+||+..+.++|.+-...|-.=..+....+ ....+.|||.|..+++.......++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467899999999999999988877652222222111 12357899999999999999998998655
No 231
>PF14893 PNMA: PNMA
Probab=75.82 E-value=3.5 Score=34.48 Aligned_cols=55 Identities=24% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhh----cccceEEEEE-ecCCCCCcEEEEEEcCH
Q 024267 1 MSGRFSRTIYVGNLPSDIREYEVEDLFY----KYGRILDIEL-KIPPRPPCYCFVEFENA 55 (270)
Q Consensus 1 ~~~~~~~~l~v~nl~~~~t~~~L~~~F~----~~G~v~~~~~-~~~~~~~g~afV~f~~~ 55 (270)
|.-+..+.|.|.+||.++++++|++.+. .+|...=+.- .....+..-|+|+|...
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 4457788999999999999999998775 3443211111 11122345688888754
No 232
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=73.79 E-value=9.3 Score=24.98 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=33.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEE
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEF 52 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f 52 (270)
+...-|||+|++..+-+.-...+.+..+.=.-+-+..+....||+|-.+
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 5567799999998887665555555444433343445556789999877
No 233
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.53 E-value=13 Score=31.65 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=46.6
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCCcEEEEEecChhhHHHHHHH
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 181 (270)
...|-|.++|.....+||...|+.|+. =..|+++.+. .+|..|.+...|..|+-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 467889999999999999999999974 4557777776 799999999999999874
No 234
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=70.44 E-value=27 Score=22.75 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=43.0
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHHc
Q 024267 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l 182 (270)
.-|.-.++..++..+|++.++. || .|..|....-+.+ .-|||.+....+|.+...++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3455567889999999999988 56 6677766555543 48999999999998876554
No 235
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=69.78 E-value=0.57 Score=41.00 Aligned_cols=67 Identities=18% Similarity=0.233 Sum_probs=51.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEEcCHHHHHHHHHhcCCcccCC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.|+|+|.||+++++-++|..++..+--+..+.+... ..-..+++|.|.---....|+..||+.-+.-
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 578999999999999999999999877777766322 1234568899987777777777787766643
No 236
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=69.69 E-value=17 Score=29.41 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=36.4
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChh
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPE 173 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~ 173 (270)
..-|+++||+.++.-.||+..+.+.+-+. +.+.....-+.||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 35699999999999999999998877443 22333333358999998754
No 237
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=68.42 E-value=24 Score=21.36 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=30.0
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024267 19 REYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.-.+|-++|.+.| .|..+....... +++.-+.+.+.+.|.+++.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~ 58 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK 58 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH
Confidence 3356888888877 677777644433 4555566777777777776
No 238
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=67.98 E-value=29 Score=32.12 Aligned_cols=62 Identities=10% Similarity=0.080 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHhhcccce-----EEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 16 SDIREYEVEDLFYKYGRI-----LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~G~v-----~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..+++.+|..++..-+.| -.|.|. ..|.||+... +.|...+..|++..+.|++|.|+.+...
T Consensus 497 ~~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 563 (629)
T PRK11634 497 DGVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPK-GMPGEVLQHFTRTRILNKPMNMQLLGDA 563 (629)
T ss_pred cCCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcCh-hhHHHHHHHhccccccCCceEEEECCCC
Confidence 348999999988766544 345554 4689999875 4578888889999999999999987533
No 239
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=66.81 E-value=23 Score=20.50 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=29.6
Q ss_pred HHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHH
Q 024267 21 YEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
.++.++|.+.| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777766 7777776544445677778888888887765
No 240
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.76 E-value=8.6 Score=32.01 Aligned_cols=8 Identities=50% Similarity=0.625 Sum_probs=3.4
Q ss_pred CCCCCCCc
Q 024267 258 RSVSPDKV 265 (270)
Q Consensus 258 rs~s~~r~ 265 (270)
+++++.+.
T Consensus 87 ~sRs~sr~ 94 (426)
T KOG2812|consen 87 RSRSPSRD 94 (426)
T ss_pred cccCCCcc
Confidence 34444443
No 241
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=64.44 E-value=5.8 Score=31.03 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=30.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEE
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
....+||+-|||..+|++.|..+.+++|.+..+..
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 45689999999999999999999999996655544
No 242
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=63.74 E-value=36 Score=21.75 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=42.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHHc
Q 024267 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l 182 (270)
.-|+-.++..++..+|+..++. |+ .|..+..+.-+.+ .-|||++.....|.....++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 4566667899999999999987 55 6666665554433 38999999988888776554
No 243
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.50 E-value=33 Score=30.83 Aligned_cols=67 Identities=19% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCcceEEEcCCCC-CCCHHHHHHHHHhc----CCeeEEEEeeCC-------------C----------------------
Q 024267 122 HSEYRVIVRGLPS-SASWQDLKDHMRKA----GDVCFAEVSRDS-------------E---------------------- 161 (270)
Q Consensus 122 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~----g~v~~~~~~~~~-------------~---------------------- 161 (270)
..+.+|.|.|+.. .+...+|.-+|..| |.|..|.|.... +
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 4567999999985 46778888888765 478888776331 1
Q ss_pred ---C-------------cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 162 ---G-------------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 ---~-------------g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
. .||.|+|.+.+.|......++|.++.
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 0 18999999999999999999999987
No 244
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=62.94 E-value=16 Score=30.39 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=24.1
Q ss_pred EEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 48 CFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
|||.|.++.+|..|++.+.... +..+.|+.+.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999544332 345566655433
No 245
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=59.74 E-value=26 Score=28.38 Aligned_cols=29 Identities=17% Similarity=0.235 Sum_probs=12.9
Q ss_pred EEEcCHHHHHHHHHhcCC-cccCCeeEEEE
Q 024267 50 VEFENARDAEDAIRGRDG-YNFDGCRLRVE 78 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~-~~~~g~~l~v~ 78 (270)
|-|+|.--++-.+..|.. ..++-++|+|.
T Consensus 57 lgfEDdVViefvynqLee~k~ldpkkmQiN 86 (354)
T KOG2146|consen 57 LGFEDDVVIEFVYNQLEEAKNLDPKKMQIN 86 (354)
T ss_pred hccccchhHHHHHHHHhhhcCCCchheeee
Confidence 344444444444444443 34444555554
No 246
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.25 E-value=23 Score=24.64 Aligned_cols=48 Identities=15% Similarity=0.318 Sum_probs=25.8
Q ss_pred ceEEEcCCCCCC---------CHHHHHHHHHhcCCeeEEEEeeCCCC--cEEEEEecChh
Q 024267 125 YRVIVRGLPSSA---------SWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPE 173 (270)
Q Consensus 125 ~~l~v~~l~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~--g~~fv~f~~~~ 173 (270)
..+.|.|++... ..+.|.+.|..|.++. +....+..+ +++.|+|..--
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w 67 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDW 67 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCCh
Confidence 467777876443 4578999999998875 444455443 69999998754
No 247
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=58.98 E-value=36 Score=24.70 Aligned_cols=54 Identities=15% Similarity=0.230 Sum_probs=36.1
Q ss_pred EEcCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024267 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+-.+...++..+|.+.++. |+ .|..|.........--|||.+....+|.....
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 33346678999999988886 54 56666664443334469999987777665443
No 248
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=58.83 E-value=11 Score=24.46 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=11.5
Q ss_pred CCCCHHHHHHHHHhcCC
Q 024267 134 SSASWQDLKDHMRKAGD 150 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~ 150 (270)
...+.+++.+++..|..
T Consensus 60 ~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDA 76 (85)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 45567777777777643
No 249
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=58.78 E-value=7.6 Score=31.13 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=50.0
Q ss_pred ceEEEcCCCCC------------CCHHHHHHHHHhcCCeeEEEEeeCC---------CCc--------------EEEEEe
Q 024267 125 YRVIVRGLPSS------------ASWQDLKDHMRKAGDVCFAEVSRDS---------EGT--------------YGVVDY 169 (270)
Q Consensus 125 ~~l~v~~l~~~------------~~~~~l~~~f~~~g~v~~~~~~~~~---------~~g--------------~~fv~f 169 (270)
.+|++.+||-. .+++-|...|..||.|..|.|+.-. ..| -|||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 56777777622 3566799999999999888776431 111 245666
Q ss_pred cChhhHHHHHHHcCCccccCccccc----ceeeecC
Q 024267 170 TNPEDMKYAIRKLDDTEFRNPWARG----RITVKRY 201 (270)
Q Consensus 170 ~~~~~a~~a~~~l~g~~~~~~~~~~----~i~v~~~ 201 (270)
-.......|+..|.|..+....++. .+.|+++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfd 265 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFD 265 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccc
Confidence 6666677888888888876443333 4445554
No 250
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=58.73 E-value=22 Score=23.81 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=31.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCH
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
+...-||||+++..+-+.--..+-+.++.=.-+-+..+....||+|-.+-+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 4567799999988776554444444444322232344556669988876543
No 251
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=57.69 E-value=6.5 Score=25.82 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHh
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLF 27 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F 27 (270)
-..++|.|.|||..+.+++|+..+
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred ccCCEEEEeCCCCCCChhhheeeE
Confidence 356899999999999999988654
No 252
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=57.60 E-value=16 Score=27.36 Aligned_cols=50 Identities=10% Similarity=0.009 Sum_probs=33.8
Q ss_pred CCHHHH---HHHhhcccceEEEEEecCC----CCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024267 18 IREYEV---EDLFYKYGRILDIELKIPP----RPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 18 ~t~~~L---~~~F~~~G~v~~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.|+++| .++-+ |.+..|.+...+ .-+|-.||+|.+.+.|...++ -++..+
T Consensus 118 ~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~ 174 (205)
T KOG4213|consen 118 ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKG 174 (205)
T ss_pred CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhc
Confidence 444444 44444 788888884432 346889999999999999877 343333
No 253
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=57.19 E-value=4.9 Score=37.36 Aligned_cols=6 Identities=17% Similarity=-0.346 Sum_probs=2.2
Q ss_pred CCCCHH
Q 024267 134 SSASWQ 139 (270)
Q Consensus 134 ~~~~~~ 139 (270)
..++..
T Consensus 197 fkwnaq 202 (1194)
T KOG4246|consen 197 FKWNAQ 202 (1194)
T ss_pred ccccHH
Confidence 333333
No 254
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=56.87 E-value=28 Score=22.55 Aligned_cols=29 Identities=34% Similarity=0.505 Sum_probs=23.4
Q ss_pred CCCCCcEEEEEEcCHHHHHHHHHhcCCcc
Q 024267 41 PPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
.+..+||-|||=.+++++..|+..+.+..
T Consensus 40 ~~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 40 PDSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp -TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred eCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 45579999999999999999999877543
No 255
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=55.07 E-value=4.7 Score=34.25 Aligned_cols=8 Identities=63% Similarity=0.650 Sum_probs=3.2
Q ss_pred CCCCCCCC
Q 024267 257 SRSVSPDK 264 (270)
Q Consensus 257 srs~s~~r 264 (270)
+|++||.+
T Consensus 293 srsrS~~~ 300 (450)
T KOG3869|consen 293 SRSRSPLR 300 (450)
T ss_pred hcccCccc
Confidence 34444433
No 256
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=54.73 E-value=3.2 Score=34.48 Aligned_cols=48 Identities=17% Similarity=-0.002 Sum_probs=38.4
Q ss_pred HHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCc
Q 024267 20 EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
...|.+++.+.|.|..-.|..+-+ .|.+||.+-.++++.++++.|.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFN-mGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFN-MGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhc-CccceEEEEcHHHHHHHHHHHHhc
Confidence 566888888999887776654432 688999999999999999988764
No 257
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=53.08 E-value=57 Score=20.74 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=41.6
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcc-------cceEEEEEec-CCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKY-------GRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~-------G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
-|...+||..+|.++|...-... ..|.-+.-.. ....+-||+.+=.+++.+.++-+ -.|+..
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~-~aG~p~ 71 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR-RAGLPA 71 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH-HcCCCc
Confidence 35677899889999988876543 2343443322 23457788888889999888877 345543
No 258
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.36 E-value=2.5 Score=36.09 Aligned_cols=75 Identities=7% Similarity=-0.141 Sum_probs=55.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecC
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+...++..||...++++|.-+|..||.|..+.+.. ++...-.+||.-.. ++|..+|..+-...++|..+.|..+.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 34567888999999999999999999998887732 34445567776654 35566666677777888888877665
No 259
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=50.83 E-value=19 Score=30.50 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=48.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCC-eeEEEEeeCCCC------cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~------g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+.|..||+..++.+|.+....+-. +....+.....+ +.+||.|..+++.+.-...++|..+.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 67889999999999999888877653 333333321111 37999999999999999989998776
No 260
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=50.28 E-value=34 Score=22.43 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=29.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhhc-ccceEEEEEecCCCCCcEEEEEEcC
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F~~-~G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
+...-|||++++..+-+.--..+-+. .++=.-+-+..+.+..||+|-.+-+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 55677999999887765433333333 2322222224455667888877654
No 261
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=50.13 E-value=44 Score=20.95 Aligned_cols=43 Identities=26% Similarity=0.367 Sum_probs=29.7
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024267 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.+++ -+..||.|..+.-. ..|+ |-|-+.++++..++.|....+
T Consensus 12 k~~r-~L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 12 KDAR-QLRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred HhHH-hHhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 3443 34689998877553 3454 458899999999988876543
No 262
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=46.95 E-value=30 Score=21.62 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=21.8
Q ss_pred cEEEEEEcCHHHHHHHHHhcCCcccCC
Q 024267 46 CYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.+++|.|.+..+|.+|-+.|...-+..
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~ 28 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPV 28 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcE
Confidence 468999999999999999877655533
No 263
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=46.77 E-value=1.1e+02 Score=22.25 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=40.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHh-cC-CeeEEEEeeCCCC-cEEEEEecChhhHHHHHHH
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~~fv~f~~~~~a~~a~~~ 181 (270)
.+.|+-.+....+..+|++.++. |+ .|..|..+.-+.+ .-|||.+....+|.....+
T Consensus 82 ~N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 82 NNTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 35566667889999999999987 55 5666655554443 3899999888777655443
No 264
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=46.07 E-value=62 Score=19.07 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=40.8
Q ss_pred eEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCH----HHHHHHHHh
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA----RDAEDAIRG 64 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 64 (270)
|+.|.||.-..-...|.+.+...-.|.++.+-.. .+.+-|.|... +...++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888888888889999998888888888543 46788888744 555666653
No 265
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=45.25 E-value=18 Score=19.25 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHhhcccc
Q 024267 16 SDIREYEVEDLFYKYGR 32 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~G~ 32 (270)
.++++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999987653
No 266
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=43.95 E-value=74 Score=26.11 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=44.7
Q ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCC-----------CcEEEEEecChhhHHH
Q 024267 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----------GTYGVVDYTNPEDMKY 177 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----------~g~~fv~f~~~~~a~~ 177 (270)
...|...|+..+++--.+...|.+||+|+.+.++.+.. .....+-|-+.+.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 46788999999999999999999999999999988761 1377888888876653
No 267
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=42.59 E-value=77 Score=24.38 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=35.3
Q ss_pred CCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024267 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+.++..++...++.-. +.|+.++...|-+.+...+.++|..|+..+-
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 46777788887776433 5667777666667778899999999988763
No 268
>PRK02302 hypothetical protein; Provisional
Probab=42.49 E-value=62 Score=21.30 Aligned_cols=37 Identities=24% Similarity=0.365 Sum_probs=27.2
Q ss_pred hhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcc
Q 024267 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
+.+||.|..+.-. ..|+ |-|-+.++|+..++.|....
T Consensus 23 LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~ 59 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLK 59 (89)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCC
Confidence 4689998777543 3454 55889999999999887644
No 269
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=42.10 E-value=87 Score=19.69 Aligned_cols=43 Identities=19% Similarity=0.220 Sum_probs=30.2
Q ss_pred HHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHc
Q 024267 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 139 ~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 182 (270)
.++.+.+..+| +....+.....+++.|+-+.+.+.++++++.+
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l 79 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEAL 79 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHH
Confidence 35666777888 44455555544558888888998888887765
No 270
>PRK02886 hypothetical protein; Provisional
Probab=41.70 E-value=65 Score=21.10 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=27.6
Q ss_pred hhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024267 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
+..||.|..+.-. ..|+ |.|-+.++|+..++.|....+
T Consensus 21 LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 21 LRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4689998877543 3454 558899999999998876543
No 271
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=41.65 E-value=1.2e+02 Score=27.67 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=33.2
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeC
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
.....+|+.+|+.++.++...++....-.++.+.+++.
T Consensus 299 l~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 299 LDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCCceEecCcccccCCHHHHHHHHHhCcccccceeecc
Confidence 34579999999999999999999999988888888884
No 272
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=40.79 E-value=78 Score=19.59 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=39.8
Q ss_pred HHHHHHhhccc-ceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 21 YEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++|.+-|...| +|..+.-+. +..+...-||+.+...+...+ ++=..|++..|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 56777788777 666665543 345566778888776554444 3335678899999876543
No 273
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=40.25 E-value=59 Score=29.09 Aligned_cols=59 Identities=19% Similarity=0.234 Sum_probs=43.2
Q ss_pred EEcCCCCCCC---HHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeE
Q 024267 10 YVGNLPSDIR---EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 10 ~v~nl~~~~t---~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (270)
+||||..-.. ..-|..+=.+||+|..+.+-. .=.|.-.+.+.|+.|+. -++..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~------~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS------VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC------ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4667654433 344555556899999888732 13688899999999999 78899999886
No 274
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=40.13 E-value=2.6e+02 Score=25.77 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=59.1
Q ss_pred CHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC--Cccc------CCeeEEEEecCCCCCCCCCC
Q 024267 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNF------DGCRLRVELAHGGSGRGPSS 90 (270)
Q Consensus 19 t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~------~g~~l~v~~~~~~~~~~~~~ 90 (270)
-.++|.+.|..-+.|..+.+.. .||-++.+....-+...+..+. +-.+ .|++|.|+++.+.+
T Consensus 59 iA~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNp------ 128 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANP------ 128 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCCC------
Confidence 3445555665555567777643 2444444443333333333333 2222 57899999987652
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEcCCCCCCCHHHHHHHHHhcC-CeeEEEEeeCC
Q 024267 91 SDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS 160 (270)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~~ 160 (270)
..-+.|+.+-..+--+.|..++...| .|+....+.|.
T Consensus 129 ---------------------------------tkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 129 ---------------------------------TGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred ---------------------------------CCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 13466777777777788888998888 66666666654
No 275
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=39.69 E-value=92 Score=19.40 Aligned_cols=58 Identities=17% Similarity=0.239 Sum_probs=35.8
Q ss_pred HHHHHHHHhcC-CeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCccccCcccccceeeecCCC
Q 024267 139 QDLKDHMRKAG-DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 139 ~~l~~~f~~~g-~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
++|.+.|.+.| .+..++.+....+ +.-+|+.....+-.. -|+=+.+. +..+.|+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg----~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLG----GQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhC----CeeEEEecCcc
Confidence 46888899998 7888887777654 256666654432222 23333343 67777776554
No 276
>PF15063 TC1: Thyroid cancer protein 1
Probab=39.00 E-value=18 Score=22.76 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.5
Q ss_pred EEcCCCCCCCHHHHHHHhhcccce
Q 024267 10 YVGNLPSDIREYEVEDLFYKYGRI 33 (270)
Q Consensus 10 ~v~nl~~~~t~~~L~~~F~~~G~v 33 (270)
-+.||-.+++.++|..||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 467888899999999999998853
No 277
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=38.62 E-value=1.1e+02 Score=20.05 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcC-CeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcC
Q 024267 138 WQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 138 ~~~l~~~f~~~g-~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 183 (270)
.+.++++++..| ++..+.+..+.-.....+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 355777888876 7888888877655577788888888877765443
No 278
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=37.71 E-value=7.1 Score=34.57 Aligned_cols=66 Identities=15% Similarity=0.157 Sum_probs=49.8
Q ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCC----cEEEEEecChhhHHHHHHHcCCcccc
Q 024267 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+.|++.|++++++-++|..+|..+.-+..+.+-..... .+.+|+|.---....|+.+||+..+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 3578999999999999999999999876655444333211 27899998777777777778777665
No 279
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=37.48 E-value=78 Score=24.52 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=37.7
Q ss_pred CCHHHHHHHhhcccc---eEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 024267 18 IREYEVEDLFYKYGR---ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~---v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+.+++.+....+|. |....+..-+..++=+...-.++++|..+...|-|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 577888888777663 555555555666663444455899999999988888876
No 280
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=37.12 E-value=1.2e+02 Score=27.28 Aligned_cols=48 Identities=17% Similarity=0.282 Sum_probs=35.3
Q ss_pred CHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhcC
Q 024267 19 REYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 19 t~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+--+|..+|. .+|-|..+.+... .......++.|.+.++|..|+..+.
T Consensus 202 ~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 202 PGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred CccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 3456777776 6888888888443 3334677889999999999987653
No 281
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=36.96 E-value=53 Score=26.58 Aligned_cols=30 Identities=27% Similarity=0.164 Sum_probs=23.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEE
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDI 36 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~ 36 (270)
-...|+|||+++|..-|..++...-.+...
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 467899999999999999999875444333
No 282
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=36.49 E-value=1.6e+02 Score=20.96 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=49.0
Q ss_pred CCceEEEcCCCCC---CCHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEec
Q 024267 5 FSRTIYVGNLPSD---IREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nl~~~---~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.-.|.|...... .+...+.+.+..-| .++.+... .+...|.|.++++-.+|.+.|....=++-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3456777766333 56778888888877 45555443 236789999999999999888765545555655554
Q ss_pred C
Q 024267 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 3
No 283
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=35.95 E-value=29 Score=26.17 Aligned_cols=62 Identities=18% Similarity=0.200 Sum_probs=43.8
Q ss_pred ceEEEcCCCCCCCH-----HHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCcccc
Q 024267 125 YRVIVRGLPSSASW-----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~~l~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+++.+++..+.. .....+|..|.+.....+.+.. +...|.|.+++.|..|..++++..+.
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~ 77 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFN 77 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccC
Confidence 45677777655533 3345677777665554444433 26778999999999999999999998
No 284
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=33.64 E-value=1.4e+02 Score=19.88 Aligned_cols=50 Identities=16% Similarity=0.264 Sum_probs=30.1
Q ss_pred CCCCCCHHHHHHHhhc-------cc-ceEEEEE--------ecCCCCCc-EEEEEEcCHHHHHHHHH
Q 024267 14 LPSDIREYEVEDLFYK-------YG-RILDIEL--------KIPPRPPC-YCFVEFENARDAEDAIR 63 (270)
Q Consensus 14 l~~~~t~~~L~~~F~~-------~G-~v~~~~~--------~~~~~~~g-~afV~f~~~~~a~~A~~ 63 (270)
|.++++++++..+... .| .|..+.- .......| |.++.|.-+.++.+.++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4567777776665543 33 5555443 11233345 67889987777777766
No 285
>PRK15464 cold shock-like protein CspH; Provisional
Probab=33.43 E-value=36 Score=21.23 Aligned_cols=19 Identities=11% Similarity=0.114 Sum_probs=11.8
Q ss_pred cceEEEEEecCCCCCcEEEEEEcC
Q 024267 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.- .+||+||+=.+
T Consensus 7 G~Vk~fn~-----~KGfGFI~~~~ 25 (70)
T PRK15464 7 GIVKTFDR-----KSGKGFIIPSD 25 (70)
T ss_pred EEEEEEEC-----CCCeEEEccCC
Confidence 55555433 38999996544
No 286
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=33.12 E-value=17 Score=22.51 Aligned_cols=39 Identities=21% Similarity=0.218 Sum_probs=27.0
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024267 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
++|++.|..++....+.- =.+|..|.+.++|..++..++
T Consensus 27 ~~v~~~~~~~~~f~k~vk-------L~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK-------LKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhhh-------hhhccCCCCHHHHHHHHHHhh
Confidence 688888876654433311 138999999999988877553
No 287
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=32.16 E-value=60 Score=27.01 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.8
Q ss_pred EEEEecChhhHHHHHHHcCCcc
Q 024267 165 GVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 165 ~fv~f~~~~~a~~a~~~l~g~~ 186 (270)
|||+|++..+|+.|.+.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999999665554
No 288
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=32.08 E-value=27 Score=25.21 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=28.7
Q ss_pred eEEEcCCCCC-CCHHHHHHHhhcccceEEEEEecC
Q 024267 8 TIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIP 41 (270)
Q Consensus 8 ~l~v~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~ 41 (270)
-|.|.|||.. .+++-|.++.+.+|.+..+.....
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 3778899998 788889999999999999988543
No 289
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=31.88 E-value=1.6e+02 Score=19.79 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=35.8
Q ss_pred CCCHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 024267 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
+-++++|..+...=|.|.+|.+..+.-..=.|.+...+..++...++.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 345677788877667999999855432233467888999999999997763
No 290
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=31.80 E-value=1.2e+02 Score=18.55 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=22.6
Q ss_pred cCCCCCCCHHHHHHHhhc--ccceEEEEEecCCCCCcEE-EEEEcC
Q 024267 12 GNLPSDIREYEVEDLFYK--YGRILDIELKIPPRPPCYC-FVEFEN 54 (270)
Q Consensus 12 ~nl~~~~t~~~L~~~F~~--~G~v~~~~~~~~~~~~g~a-fV~f~~ 54 (270)
.-|-..+.. +|.+.+.. .|.|...+|. +| .|.+ +|+|.+
T Consensus 10 ~~irDRi~~-~l~~~l~~~~~g~I~~fKmt-DG--~giG~vv~~~n 51 (64)
T PF11061_consen 10 SRIRDRIPK-ELVDKLGKNPIGTIKGFKMT-DG--SGIGVVVEFSN 51 (64)
T ss_pred hhhhhhccH-HHHHHhccCCcEEEEEEEEe-cC--CcEEEEEEecC
Confidence 344334444 45555555 8899998885 33 3433 466664
No 291
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=30.96 E-value=1.2e+02 Score=18.11 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=27.2
Q ss_pred CHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEEcCHHHHHHHHHhc
Q 024267 19 REYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.-.+|.++|..+| .|..+...... ...+...+.+...++...+++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 4467888888887 66666553321 12455567776554555544433
No 292
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=30.81 E-value=2.1e+02 Score=20.90 Aligned_cols=33 Identities=36% Similarity=0.436 Sum_probs=25.2
Q ss_pred eEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC
Q 024267 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
|.++.+. ..-+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555443 34589999999988999999987765
No 293
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=30.58 E-value=1.2e+02 Score=17.80 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=21.6
Q ss_pred CCHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEEcC
Q 024267 18 IREYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFEN 54 (270)
Q Consensus 18 ~t~~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~ 54 (270)
-.-.+|.++|..+| .|..+...... .......+.+.+
T Consensus 11 g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 11 GVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred CHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 34567888888887 67777664432 223334444444
No 294
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=30.24 E-value=56 Score=26.35 Aligned_cols=23 Identities=30% Similarity=0.430 Sum_probs=20.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhh
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFY 28 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~ 28 (270)
...++|+|||..++..-|.+++.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~ 119 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLE 119 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHH
T ss_pred CceEEEEEecccchHHHHHHHhh
Confidence 45789999999999999999987
No 295
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=30.08 E-value=19 Score=22.33 Aligned_cols=24 Identities=17% Similarity=0.338 Sum_probs=16.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHh
Q 024267 4 RFSRTIYVGNLPSDIREYEVEDLF 27 (270)
Q Consensus 4 ~~~~~l~v~nl~~~~t~~~L~~~F 27 (270)
..+++||||+||..+-.+.=..++
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~ 48 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWY 48 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHH
Confidence 457899999999886555533333
No 296
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=30.05 E-value=33 Score=20.85 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=10.2
Q ss_pred HHHHHHHhhcccceEEE
Q 024267 20 EYEVEDLFYKYGRILDI 36 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~ 36 (270)
-=|+.+++.+||.+..+
T Consensus 4 lyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp HHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHCCEEEEe
Confidence 35889999999976543
No 297
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=30.00 E-value=1.8e+02 Score=19.79 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=29.0
Q ss_pred HHHHHHhhcccceEEEEEecCC-CCCcEEEEEEcCHHHHHHHHH
Q 024267 21 YEVEDLFYKYGRILDIELKIPP-RPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|..+++.+| |.+-.|..++ .+.-||++++.|.+....+|.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 35777888887 5555554433 457799999997776666655
No 298
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=29.75 E-value=21 Score=29.81 Aligned_cols=48 Identities=25% Similarity=0.221 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCeeEEEEeeCCCCcEEEEEecChhhHHHHHHHcCCc
Q 024267 138 WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~g~ 185 (270)
...+.+++.+.|.|..-++.+.-+-|.+||..-.++++.++++.+.+.
T Consensus 275 ~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 275 PPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 467888888999888777777666679999999999999999998876
No 299
>COG5227 SMT3 Ubiquitin-like protein (sentrin) [Posttranslational modification, protein turnover, chaperones]
Probab=29.75 E-value=1.4e+02 Score=19.62 Aligned_cols=64 Identities=9% Similarity=0.176 Sum_probs=40.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhhc-cc-ceEEEEEecCCC----CCcEEEEEEcCHHHHHHHHHhcCC
Q 024267 3 GRFSRTIYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPR----PPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 3 ~~~~~~l~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~----~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
++++++||. +|...++-..|.+.|+. .| ...++++..+|. .+.=+=+.|++-+..+...+.+-|
T Consensus 31 ~qd~telfF-kiKktT~f~klm~af~~rqGK~m~slRfL~dG~rI~~dqTP~dldmEdnd~iEav~eQvGG 100 (103)
T COG5227 31 DQDGTELFF-KIKKTTTFKKLMDAFSRRQGKNMSSLRFLFDGKRIDLDQTPGDLDMEDNDEIEAVTEQVGG 100 (103)
T ss_pred cCCCCEEEE-EEeccchHHHHHHHHHHHhCcCcceeEEEEcceecCCCCChhhcCCccchHHHHHHHHhcC
Confidence 466777776 78888888888888874 45 445555544331 122244567777777777665544
No 300
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=29.74 E-value=4.4e+02 Score=24.66 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=34.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhhc---ccceEEEEEecCCCCCcEEE-EEEcCHHHHHHHHHhc
Q 024267 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nl~~~~t~~~L~~~F~~---~G~v~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~~l 65 (270)
..+|.|+-||..++.+.|.+.... -|.|. |.-..+....+..| |++.....+...+..|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHH
Confidence 468999999999999998886542 24443 22222222244555 3455444555444433
No 301
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.49 E-value=1.2e+02 Score=17.64 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEEcCHHHHHHHHH
Q 024267 21 YEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|.++|.++| .|..+...... .......+...+.+.+.++++
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 45667777776 66666553322 123334455567777777766
No 302
>PRK15463 cold shock-like protein CspF; Provisional
Probab=29.48 E-value=47 Score=20.69 Aligned_cols=19 Identities=5% Similarity=0.034 Sum_probs=11.8
Q ss_pred cceEEEEEecCCCCCcEEEEEEcC
Q 024267 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.- .+||+||+=.+
T Consensus 7 G~Vk~fn~-----~kGfGFI~~~~ 25 (70)
T PRK15463 7 GIVKTFDG-----KSGKGLITPSD 25 (70)
T ss_pred EEEEEEeC-----CCceEEEecCC
Confidence 55555433 38999997543
No 303
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=29.24 E-value=50 Score=20.86 Aligned_cols=9 Identities=22% Similarity=0.276 Sum_probs=7.0
Q ss_pred CcEEEEEEc
Q 024267 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 13 KGfGFI~~~ 21 (74)
T PRK09937 13 KGFGFICPE 21 (74)
T ss_pred CCeEEEeeC
Confidence 899999643
No 304
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=29.09 E-value=51 Score=20.33 Aligned_cols=19 Identities=16% Similarity=0.125 Sum_probs=12.3
Q ss_pred cceEEEEEecCCCCCcEEEEEEcC
Q 024267 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.. .+||+||.=.+
T Consensus 4 G~Vk~f~~-----~kGfGFI~~~~ 22 (68)
T TIGR02381 4 GIVKWFNN-----AKGFGFICPEG 22 (68)
T ss_pred eEEEEEeC-----CCCeEEEecCC
Confidence 55555533 38999997654
No 305
>PRK14998 cold shock-like protein CspD; Provisional
Probab=29.02 E-value=51 Score=20.76 Aligned_cols=19 Identities=16% Similarity=0.164 Sum_probs=11.6
Q ss_pred cceEEEEEecCCCCCcEEEEEEcC
Q 024267 31 GRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
|.|+.+.. .+||+||.=.+
T Consensus 4 G~Vkwfn~-----~kGfGFI~~~~ 22 (73)
T PRK14998 4 GTVKWFNN-----AKGFGFICPEG 22 (73)
T ss_pred eEEEEEeC-----CCceEEEecCC
Confidence 55555433 38999996543
No 306
>PHA01632 hypothetical protein
Probab=28.98 E-value=74 Score=18.70 Aligned_cols=22 Identities=14% Similarity=0.433 Sum_probs=17.6
Q ss_pred eEEEcCCCCCCCHHHHHHHHHh
Q 024267 126 RVIVRGLPSSASWQDLKDHMRK 147 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~ 147 (270)
-+.|..+|...|+++|+..+.+
T Consensus 18 yilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 18 YILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EEehhhcCCCCCHHHHHHHHHH
Confidence 4566789999999999887654
No 307
>PRK11901 hypothetical protein; Reviewed
Probab=28.96 E-value=1.7e+02 Score=24.50 Aligned_cols=60 Identities=15% Similarity=0.145 Sum_probs=37.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecCCC-CC-cEEEE--EEcCHHHHHHHHHhcCCc
Q 024267 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPR-PP-CYCFV--EFENARDAEDAIRGRDGY 68 (270)
Q Consensus 5 ~~~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~-~~-g~afV--~f~~~~~a~~A~~~l~~~ 68 (270)
...+|.|..+ ..++.|..|..+++ +..+.++.+.. .+ =|..| .|.+.++|..|+..|..-
T Consensus 244 ~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 244 SHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 3456666654 45777888877775 44555543321 11 23222 689999999999988743
No 308
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=28.62 E-value=1.8e+02 Score=19.25 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=22.0
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cc-ceEEEEE
Q 024267 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIEL 38 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~ 38 (270)
.|+=.++..+|..||.+.|+. || .|..|..
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT 53 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNT 53 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEE
Confidence 444457789999999999986 55 5666655
No 309
>PRK10943 cold shock-like protein CspC; Provisional
Probab=28.51 E-value=48 Score=20.55 Aligned_cols=10 Identities=10% Similarity=0.298 Sum_probs=7.6
Q ss_pred CcEEEEEEcC
Q 024267 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||+=.+
T Consensus 15 kGfGFI~~~~ 24 (69)
T PRK10943 15 KGFGFITPAD 24 (69)
T ss_pred CCcEEEecCC
Confidence 8999997543
No 310
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=28.47 E-value=51 Score=29.39 Aligned_cols=40 Identities=40% Similarity=0.586 Sum_probs=34.9
Q ss_pred CCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 44 PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 44 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
...|+++.|+++..+.+|+..++|..+.+..+.+..+...
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 3579999999999999999999999998888888776644
No 311
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=28.44 E-value=50 Score=20.48 Aligned_cols=10 Identities=20% Similarity=0.418 Sum_probs=7.5
Q ss_pred CcEEEEEEcC
Q 024267 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||+=.+
T Consensus 15 kGyGFI~~~~ 24 (69)
T PRK09507 15 KGFGFITPED 24 (69)
T ss_pred CCcEEEecCC
Confidence 8999987543
No 312
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=28.08 E-value=64 Score=21.38 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHhhcccce-EEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcC
Q 024267 14 LPSDIREYEVEDLFYKYGRI-LDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 14 l~~~~t~~~L~~~F~~~G~v-~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+.+.++...|...|-.-|.= .-..+. .+.=+.+|.|.|.+.+.+..|.+.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lR-kD~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLR-KDYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhc-cccceEeEEEECCChHHHHHHHHHHH
Confidence 34556777777666555521 111111 11124689999999999999988663
No 313
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=27.97 E-value=61 Score=19.56 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=8.8
Q ss_pred CcEEEEEEcCH
Q 024267 45 PCYCFVEFENA 55 (270)
Q Consensus 45 ~g~afV~f~~~ 55 (270)
+|||||+-.+.
T Consensus 12 kgyGFI~~~~~ 22 (66)
T PF00313_consen 12 KGYGFITSDDG 22 (66)
T ss_dssp TTEEEEEETTS
T ss_pred CCceEEEEccc
Confidence 79999987653
No 314
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=27.89 E-value=42 Score=26.49 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=26.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeeEEE
Q 024267 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAE 155 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~ 155 (270)
.++|+-|+|...+++.|..+.+..|-+..+.
T Consensus 41 d~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 41 DCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 5899999999999999999999988654443
No 315
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=27.54 E-value=1.5e+02 Score=17.87 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=25.9
Q ss_pred CHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEEc--CHHHHHHHHH
Q 024267 19 REYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFE--NARDAEDAIR 63 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~--~~~~a~~A~~ 63 (270)
.-..|.++|..+| .|..+..... .......+|.+. +.+++.++|.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~ 62 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLR 62 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHH
Confidence 4456778888887 6666655433 222333344444 5566666666
No 316
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=27.53 E-value=33 Score=29.31 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=42.4
Q ss_pred ceEEEcCCCCCCCH--------HHHHHHhhc--ccceEEEEEec---CCCCCcEEEEEEcCHHHHHHHHH
Q 024267 7 RTIYVGNLPSDIRE--------YEVEDLFYK--YGRILDIELKI---PPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 7 ~~l~v~nl~~~~t~--------~~L~~~F~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+.+|+.++....+. +++..+|.. .+++..+.+.. .....|-.|++|...+.|+.++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666665444 489999998 56777777743 34667888999999999999875
No 317
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=27.50 E-value=2.9e+02 Score=21.23 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=27.7
Q ss_pred EEEcCHHHHHHHHHhcCCcccCCeeEEEEecCCC
Q 024267 50 VEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.|.+.++|..-++ -.|..+....|+|....+.
T Consensus 47 ~I~qs~e~ai~~lE-~e~KlWreteI~I~~g~p~ 79 (238)
T PF10915_consen 47 IIFQSAEDAIRILE-EEGKLWRETEIKIQSGKPS 79 (238)
T ss_pred hhccCHHHHHHHHH-HhcchheeeeEEEecCCcc
Confidence 47999999999999 7888888889998876643
No 318
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=27.18 E-value=1.7e+02 Score=19.64 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=26.3
Q ss_pred eEEEcCCCCCCCHHHHHH---HhhcccceEEEEE-----ecCCCCCcEEEEEEc
Q 024267 8 TIYVGNLPSDIREYEVED---LFYKYGRILDIEL-----KIPPRPPCYCFVEFE 53 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~---~F~~~G~v~~~~~-----~~~~~~~g~afV~f~ 53 (270)
..|+.|||.++.+.++.. +|..++.-..|.. .....+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 358899999988777554 4555553344444 223455666655443
No 319
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=27.14 E-value=2.2e+02 Score=19.88 Aligned_cols=71 Identities=11% Similarity=0.247 Sum_probs=37.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEc--C------HHHHHHHHHhcCCcccCCeeEEE
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFE--N------ARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~--~------~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
..||||++|.....+.|.+. .+..|.++.-... ....++-++.+. + .+....+++.++...-.|++|-|
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlV 83 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKL--GITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLV 83 (138)
T ss_pred CCeEECChhHcCCHHHHHHc--CCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEE
Confidence 35999999977765555543 4556666543211 122344444443 3 12224445544444445677776
Q ss_pred Ee
Q 024267 78 EL 79 (270)
Q Consensus 78 ~~ 79 (270)
.=
T Consensus 84 HC 85 (138)
T smart00195 84 HC 85 (138)
T ss_pred EC
Confidence 53
No 320
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=26.67 E-value=2.2e+02 Score=19.75 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.5
Q ss_pred CCCCCCHHHHHHHhhcccceEEEEE
Q 024267 14 LPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 14 l~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
||+-+++ |-..|+.=|+|.+|..
T Consensus 11 lPPYTnK--LSDYfeSPGKI~svIt 33 (145)
T TIGR02542 11 LPPYTNK--LSDYFESPGKIQSVIT 33 (145)
T ss_pred cCCccch--hhHHhcCCCceEEEEE
Confidence 6777754 8899999999988754
No 321
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=26.65 E-value=2.1e+02 Score=20.10 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=29.4
Q ss_pred HHHHHhhccc-ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCCccc
Q 024267 22 EVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 22 ~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
-|.+.|..++ .+..++...+.+.+..-|+.-.+.+.|..|++ -.|..+
T Consensus 85 ~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLe-d~gi~~ 133 (142)
T COG4747 85 RIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALE-DAGIKL 133 (142)
T ss_pred HHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHH-HcCCee
Confidence 3555665555 44555554455556666666778888888888 444443
No 322
>PRK11901 hypothetical protein; Reviewed
Probab=26.25 E-value=1.5e+02 Score=24.90 Aligned_cols=61 Identities=20% Similarity=0.285 Sum_probs=37.5
Q ss_pred CCcceEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEeeCCCCc---EEEE--EecChhhHHHHHHHcCCcc
Q 024267 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YGVV--DYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g---~~fv--~f~~~~~a~~a~~~l~g~~ 186 (270)
...++|-|.. ...++.|..+....+ +..+.+......| |..| .|.+.++|..|+..|-...
T Consensus 243 ~~~YTLQL~A---as~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 243 ASHYTLQLSS---ASRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred CCCeEEEeec---CCCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 3345555544 445777888877775 3334454444333 3333 5889999999998875543
No 323
>PRK09890 cold shock protein CspG; Provisional
Probab=25.67 E-value=59 Score=20.22 Aligned_cols=19 Identities=11% Similarity=0.137 Sum_probs=11.8
Q ss_pred ccceEEEEEecCCCCCcEEEEEEc
Q 024267 30 YGRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 30 ~G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
.|.|+.+.- .+||+||+=.
T Consensus 6 ~G~Vk~f~~-----~kGfGFI~~~ 24 (70)
T PRK09890 6 TGLVKWFNA-----DKGFGFITPD 24 (70)
T ss_pred eEEEEEEEC-----CCCcEEEecC
Confidence 355555433 3899999754
No 324
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=24.60 E-value=1.9e+02 Score=25.24 Aligned_cols=49 Identities=22% Similarity=0.399 Sum_probs=34.9
Q ss_pred CCCHHHHHHHhhc----ccceEEEEEecC--CCCCcEEEEEEcCHHHHHHHHHhc
Q 024267 17 DIREYEVEDLFYK----YGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 17 ~~t~~~L~~~F~~----~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
+..--+|..+|.. +|-|.++.+... .....+.++.|.+.++|..|+..+
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 3344467888753 788888887432 344567788999999999998654
No 325
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=24.54 E-value=1.4e+02 Score=27.38 Aligned_cols=8 Identities=13% Similarity=-0.035 Sum_probs=3.2
Q ss_pred EecChhhH
Q 024267 168 DYTNPEDM 175 (270)
Q Consensus 168 ~f~~~~~a 175 (270)
.+++...|
T Consensus 70 sMenv~ha 77 (1027)
T KOG3580|consen 70 SMENVLHA 77 (1027)
T ss_pred chhhhHHH
Confidence 34444333
No 326
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.51 E-value=60 Score=25.26 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=10.6
Q ss_pred CCCcEEEEEEcCH
Q 024267 43 RPPCYCFVEFENA 55 (270)
Q Consensus 43 ~~~g~afV~f~~~ 55 (270)
..+.||||+|.+-
T Consensus 107 ~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 107 ASRPYAFIEFDTF 119 (216)
T ss_pred cCCCeeEEehhHH
Confidence 4588999999864
No 327
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=24.40 E-value=1.1e+02 Score=17.82 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhhcccc
Q 024267 7 RTIYVGNLPSDIREYEVEDLFYKYGR 32 (270)
Q Consensus 7 ~~l~v~nl~~~~t~~~L~~~F~~~G~ 32 (270)
..++|.+.....+.++|.+++..+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46778887768889999999999885
No 328
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=24.30 E-value=64 Score=20.01 Aligned_cols=9 Identities=11% Similarity=0.350 Sum_probs=7.1
Q ss_pred CcEEEEEEc
Q 024267 45 PCYCFVEFE 53 (270)
Q Consensus 45 ~g~afV~f~ 53 (270)
+||+||+=.
T Consensus 16 kGfGFI~~~ 24 (70)
T PRK10354 16 KGFGFITPD 24 (70)
T ss_pred CCcEEEecC
Confidence 899999743
No 329
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=23.97 E-value=1.6e+02 Score=19.36 Aligned_cols=30 Identities=17% Similarity=0.371 Sum_probs=21.7
Q ss_pred EEEcCCCCCCCHHHHHHHhhc-cc-ceEEEEE
Q 024267 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIEL 38 (270)
Q Consensus 9 l~v~nl~~~~t~~~L~~~F~~-~G-~v~~~~~ 38 (270)
.++-.++..+|..||.+.++. || .|..|..
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt 53 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNT 53 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEE
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEE
Confidence 344457889999999999986 55 5556655
No 330
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=23.82 E-value=2.3e+02 Score=27.68 Aligned_cols=33 Identities=15% Similarity=0.237 Sum_probs=27.7
Q ss_pred ecCCCCCcEEEEEEcCHHHHHHHHHhcCCcccC
Q 024267 39 KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 39 ~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+....-+||-|||=..+..+..||+.+-+....
T Consensus 204 ~a~D~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 204 FAKDHLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred EeccccceeEEEEechhHHHHHHHhhhhhheec
Confidence 334566999999999999999999998887766
No 331
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=23.29 E-value=1e+02 Score=24.65 Aligned_cols=24 Identities=29% Similarity=0.211 Sum_probs=20.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccc
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKYG 31 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G 31 (270)
-+.|+|||+.++.+.|.+++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 378999999999999999997443
No 332
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=22.95 E-value=1.7e+02 Score=17.00 Aligned_cols=46 Identities=15% Similarity=0.159 Sum_probs=25.2
Q ss_pred HHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEE-cCHHHHHHHHHhc
Q 024267 20 EYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEF-ENARDAEDAIRGR 65 (270)
Q Consensus 20 ~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f-~~~~~a~~A~~~l 65 (270)
-.+|.++|...| .|..+....++....++|+.+ .+...+..+++.|
T Consensus 14 l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 61 (66)
T PF01842_consen 14 LADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEEL 61 (66)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHH
Confidence 356777787777 666776654433244555444 3444444444433
No 333
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=22.94 E-value=2.1e+02 Score=20.02 Aligned_cols=44 Identities=7% Similarity=0.170 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHhhcccce--EEEEE------ecCCCCCcEEEEEEcCHHHHHH
Q 024267 16 SDIREYEVEDLFYKYGRI--LDIEL------KIPPRPPCYCFVEFENARDAED 60 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~G~v--~~~~~------~~~~~~~g~afV~f~~~~~a~~ 60 (270)
+.++.++|++-++..-.. ..|.+ ...+.+.|||.| |.+.|.|.+
T Consensus 33 a~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 33 ANVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 357888888877653211 12222 123566777776 666666554
No 334
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=22.50 E-value=2e+02 Score=17.80 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=30.9
Q ss_pred CCCCHHHHHHHhhcccc---eEEEEE-ecCCCCCcEEEEEEc-CHHHHHHHHHhcC
Q 024267 16 SDIREYEVEDLFYKYGR---ILDIEL-KIPPRPPCYCFVEFE-NARDAEDAIRGRD 66 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~G~---v~~~~~-~~~~~~~g~afV~f~-~~~~a~~A~~~l~ 66 (270)
..+.+..|-++...||- |..-.+ ...+.+-|.-+|++. +.++.++|+..|.
T Consensus 12 ~~~~~piis~l~~~~~v~~nIl~g~i~~i~~~~~G~l~l~l~g~~~~~~~a~~~L~ 67 (76)
T PF09383_consen 12 NSAQEPIISQLIREFGVDVNILHGNIEEIQGTPFGILILELPGDDEEIEKAIAYLR 67 (76)
T ss_dssp CSSSSCHHHHHHHHHT-EEEEEEEEEEEETTEEEEEEEEEEES-HHHHHHHHHHHH
T ss_pred CCcCchHHHHHHHHhCCCEEEEEEEeEEcCCeeEEEEEEEEECCHHHHHHHHHHHH
Confidence 35666677777777773 333333 223556788888885 4455677777665
No 335
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=22.45 E-value=1.3e+02 Score=24.83 Aligned_cols=44 Identities=18% Similarity=0.304 Sum_probs=31.4
Q ss_pred CCHHHHHHHh----hcccceEEEEEecCCCCCcEEEEEEcCHHHHHHHHH
Q 024267 18 IREYEVEDLF----YKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 18 ~t~~~L~~~F----~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+++++.++| ..||.| ++.+..-|... ..|++..+.+++...++
T Consensus 73 s~~~~~~~~~~~~~~~fg~v-DvLVNNAG~~~-~~~~~~~~~~~~~~~md 120 (282)
T KOG1205|consen 73 SDEESVKKFVEWAIRHFGRV-DVLVNNAGISL-VGFLEDTDIEDVRNVMD 120 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCC-CEEEecCcccc-ccccccCcHHHHHHHhh
Confidence 4556677776 578886 45565556666 78888888888887766
No 336
>PF03389 MobA_MobL: MobA/MobL family; InterPro: IPR005053 This entry represents a domain found at the N terminus of MobA in Escherichia coli, and MobL in Thiobacillus ferrooxidans (Acidithiobacillus ferrooxidans), as well as in conjugal transfer protein TraA. MobA and MobL are mobilisation proteins, which are essential for specific plasmid transfer.; GO: 0009291 unidirectional conjugation; PDB: 2NS6_A.
Probab=22.43 E-value=1.8e+02 Score=22.79 Aligned_cols=45 Identities=16% Similarity=0.268 Sum_probs=24.0
Q ss_pred EEcCCCCCCCHHH--------HHHHhhcccceEEEEEecCCCCCcEEEEEEcC
Q 024267 10 YVGNLPSDIREYE--------VEDLFYKYGRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 10 ~v~nl~~~~t~~~--------L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
++-.||..++.++ +.++|..+|-+.++.|+.++...-.|-|.|.+
T Consensus 71 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~aIH~d~~~NpHaHim~t~ 123 (216)
T PF03389_consen 71 FEIALPRELTLEQNIELVREFAQENFVDYGMAADVAIHDDGPRNPHAHIMFTT 123 (216)
T ss_dssp EEEE--TTS-HHHHHHHHHHHHHHHHTTTT--EEEEEEEETTTEEEEEEEE--
T ss_pred eeeeCCccCCHHHHHHHHHHHHHHHhhccceEEEEEEecCCCCCCEEEEEeec
Confidence 4557999988887 34446677888888887543333345555543
No 337
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=22.41 E-value=83 Score=18.88 Aligned_cols=10 Identities=10% Similarity=0.388 Sum_probs=7.9
Q ss_pred CcEEEEEEcC
Q 024267 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||.=.+
T Consensus 12 kGfGFI~~~~ 21 (65)
T cd04458 12 KGFGFITPDD 21 (65)
T ss_pred CCeEEEecCC
Confidence 7899997655
No 338
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=22.15 E-value=1.1e+02 Score=24.91 Aligned_cols=22 Identities=27% Similarity=0.239 Sum_probs=19.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 024267 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~ 29 (270)
.+.|+|+|+.++..-|.+++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5789999999999999998864
No 339
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=22.04 E-value=71 Score=18.89 Aligned_cols=11 Identities=27% Similarity=0.513 Sum_probs=8.5
Q ss_pred CCcEEEEEEcC
Q 024267 44 PPCYCFVEFEN 54 (270)
Q Consensus 44 ~~g~afV~f~~ 54 (270)
.+|||||...+
T Consensus 7 ~~GfGFv~~~~ 17 (58)
T PF08206_consen 7 PKGFGFVIPDD 17 (58)
T ss_dssp SSS-EEEEECT
T ss_pred cCCCEEEEECC
Confidence 47999999887
No 340
>KOG1888 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=21.70 E-value=2e+02 Score=27.41 Aligned_cols=69 Identities=17% Similarity=0.269 Sum_probs=43.4
Q ss_pred eEEEcCCC--CCCCHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEEcCHHHHHHHHHhcCCcccCCeeEE-EEec
Q 024267 8 TIYVGNLP--SDIREYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR-VELA 80 (270)
Q Consensus 8 ~l~v~nl~--~~~t~~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~-v~~~ 80 (270)
-|+|.+-. ..++.....++|..|| +|.-+.+++++ +-+..+.+ .++-..||..||.....-.+|. +.|.
T Consensus 311 ~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~ekr~~E~IL----~~eF~~ai~yLNqflp~e~rl~~i~wD 384 (868)
T KOG1888|consen 311 DIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNEKRPRESIL----REEFENAIDYLNQFLPPENRLKYIHWD 384 (868)
T ss_pred CeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeeccccCCchhHHH----HHHHHHHHHHHhccCCCcceeeeeech
Confidence 35555553 4688899999999999 66677776665 33333322 3566778888885554444443 4443
No 341
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=21.33 E-value=1.9e+02 Score=18.35 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=16.7
Q ss_pred CcEEEEEEcCHHHHHHHHHhcCCc
Q 024267 45 PCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
.+..+|.|+..++-..|.. |.|.
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g~ 76 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRGC 76 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT-
T ss_pred CCEEEEEEcCCCCHHHHHh-hCCC
Confidence 6778999999999999988 6543
No 342
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=21.28 E-value=1.9e+02 Score=26.51 Aligned_cols=48 Identities=21% Similarity=0.427 Sum_probs=35.6
Q ss_pred CCHHHHHHHhh----cccceEEEEEec--CCCCCcEEEEEEcCHHHHHHHHHhc
Q 024267 18 IREYEVEDLFY----KYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 18 ~t~~~L~~~F~----~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.+--||..+|- .+|-|.++.+.. .+.....+++.|.+.++|..|+..+
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i 331 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIAT 331 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHH
Confidence 34457888872 588999888843 2344667899999999999988764
No 343
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.17 E-value=1.1e+02 Score=25.32 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.2
Q ss_pred eEEEcCCCCCCCHHHHHHHhhc
Q 024267 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~ 29 (270)
.+.|+|||+.++...|.+++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4788999999999999999865
No 344
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=20.99 E-value=23 Score=32.84 Aligned_cols=21 Identities=24% Similarity=0.521 Sum_probs=18.4
Q ss_pred CCcEEEEEEcCHHHHHHHHHh
Q 024267 44 PPCYCFVEFENARDAEDAIRG 64 (270)
Q Consensus 44 ~~g~afV~f~~~~~a~~A~~~ 64 (270)
..|||||+|..+.++..|++.
T Consensus 380 ~SgfC~vTFteHts~Vt~v~f 400 (893)
T KOG0291|consen 380 QSGFCFVTFTEHTSGVTAVQF 400 (893)
T ss_pred cCceEEEEeccCCCceEEEEE
Confidence 479999999999999998873
No 345
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Probab=20.92 E-value=1.1e+02 Score=24.62 Aligned_cols=30 Identities=7% Similarity=0.126 Sum_probs=18.8
Q ss_pred CCCCcceEEEcCCCCCCCHHHHHHHHHhcC
Q 024267 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAG 149 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 149 (270)
+-..+++|-+.|+|..+.--.|+.....-|
T Consensus 123 ~ik~GN~lpL~~IP~Gt~VhNVE~~pG~GG 152 (275)
T COG0090 123 DIKPGNALPLGNIPEGTIVHNVELKPGDGG 152 (275)
T ss_pred CcCCcceeeeccCCCCceEEeeeeccCCCc
Confidence 344678899999998876544444433333
No 346
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=20.74 E-value=5.4e+02 Score=22.29 Aligned_cols=65 Identities=14% Similarity=0.110 Sum_probs=45.2
Q ss_pred CCHHHHHHHhhccc---ceEEEEEecCCCCCcEEEEEEcCHHHHHHHHHhcCC----cccCCeeEEEEecCC
Q 024267 18 IREYEVEDLFYKYG---RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG----YNFDGCRLRVELAHG 82 (270)
Q Consensus 18 ~t~~~L~~~F~~~G---~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~----~~~~g~~l~v~~~~~ 82 (270)
.+++++..+-..+| -|....++.-+..+.=+.-.-.+.++|..+.+.+=| +.+.|+.+..-+...
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee 97 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEE 97 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEe
Confidence 67888888888886 344555555555565455555689999999988888 778887766555443
No 347
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=20.12 E-value=2.5e+02 Score=17.87 Aligned_cols=59 Identities=14% Similarity=0.167 Sum_probs=41.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhhccc-ceEEEEEecCCC--CCcEEEEEEcCHHHHHHHHHhcCCc
Q 024267 8 TIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPR--PPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 8 ~l~v~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~--~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
+|+|.|-|--+ +.+-.+|..-| .|.++.+-.+.. --.+-++...+++.....++.|+..
T Consensus 6 si~v~n~pGVL--~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 6 SLVIHNDPSVL--LRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKL 67 (76)
T ss_pred EEEEecCCCHH--HHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCC
Confidence 56777766554 45788999877 888888854432 2234566678999999888888753
No 348
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=20.12 E-value=2.6e+02 Score=23.74 Aligned_cols=44 Identities=11% Similarity=0.190 Sum_probs=27.4
Q ss_pred CCCCCCCHHHHHHHhhcc-cceEEEEEecC---C-----CCCcEEEEEEcCHH
Q 024267 13 NLPSDIREYEVEDLFYKY-GRILDIELKIP---P-----RPPCYCFVEFENAR 56 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~~~-G~v~~~~~~~~---~-----~~~g~afV~f~~~~ 56 (270)
.|...++.++|+++|..| ..-.-|++... . ....||.|-|...+
T Consensus 252 ~l~~~~t~~~i~~~y~~~Y~~epfVrv~~~~~~P~~k~V~GsN~cdIgf~~d~ 304 (349)
T COG0002 252 KLKDLVTLEELHAAYEEFYAGEPFVRVVPEGGYPDTKAVAGSNFCDIGFAVDE 304 (349)
T ss_pred ecCCCCCHHHHHHHHHHHhCCCCeEEEecCCCCCChhhhcCCcceEEEEEEcC
Confidence 345558999999999864 33334444321 0 23567888777555
No 349
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=20.08 E-value=1.9e+02 Score=21.66 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHhhcccc
Q 024267 16 SDIREYEVEDLFYKYGR 32 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~G~ 32 (270)
..+|-++|.++|.+|++
T Consensus 107 hgcT~e~I~~~F~~ys~ 123 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSD 123 (175)
T ss_pred CCcCHHHHHHHHHHhcC
Confidence 46899999999999985
Done!