BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024268
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1M6E|X Chain X, Crystal Structure Of Salicylic Acid Carboxyl
Methyltransferase (Samt)
Length = 359
Score = 210 bits (534), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/251 (44%), Positives = 160/251 (63%), Gaps = 15/251 (5%)
Query: 1 MDVKEVLFMNKGDGENSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVIWNKVFNVADLG 60
MDV++VL M G GENSYA NS ++VI ++KP+ E+A+ +L+ + + ++ +ADLG
Sbjct: 1 MDVRQVLHMKGGAGENSYAMNSFIQRQVISITKPITEAAITALYSGDTVTTRL-AIADLG 59
Query: 61 CASNASTFSVMSSVI---ENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADR 117
C+S + ++ +I E ++KK N+P E+Q++LNDLPGNDFN +F+ L D
Sbjct: 60 CSSGPNALFAVTELIKTVEELRKKMGRENSP--EYQIFLNDLPGNDFNAIFRSLPIENDV 117
Query: 118 YNDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFIS 177
D F+ G PGSFYGRLFP N+L +HSSY + WLS+VP + NKG I+++
Sbjct: 118 --DGVCFINGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIES------NKGNIYMA 169
Query: 178 KTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVLVFNGRPSADFTRDYCYPIPWES 237
T P +V AY +QF+ED +LFL+ R+QE+VP GR+VL GR S D C I W+
Sbjct: 170 NTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLI-WQL 228
Query: 238 LSEAIAAMVSE 248
L+ A+ MVSE
Sbjct: 229 LAMALNQMVSE 239
>pdb|2EFJ|A Chain A, The Structure Of 1,7 Dimethylxanthine Methyltransferase
Length = 384
Score = 172 bits (436), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 141/227 (62%), Gaps = 12/227 (5%)
Query: 1 MDVKEVLFMNKGDGENSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVI-WNKVFNVADL 59
M+++EVL MN G+G+ SYA+NS + +I + KPVLE +Q L + NK F V DL
Sbjct: 1 MELQEVLHMNGGEGDTSYAKNSSYNLFLIRV-KPVLEQCIQELLRANLPNINKCFKVGDL 59
Query: 60 GCASNASTFSVMSSVIENVQKKCVELNAPI--PEFQLYLNDLPGNDFNTLFKGLSSF--- 114
GCAS +TFS + +++++ K E + P Q++LNDL NDFN++FK L SF
Sbjct: 60 GCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRN 119
Query: 115 ADRYND---ASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWLSKVPK-LTDEAGLPLIN 170
++ N S + PGSFY RLFP S+ +HS Y +HWLS+VP L E G+ +N
Sbjct: 120 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGIS-VN 178
Query: 171 KGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVLVF 217
KG I+ SK S +++AYL QF +DF+ FL+ S+E++ GR++L F
Sbjct: 179 KGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEELISRGRMLLTF 225
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 94/225 (41%), Positives = 135/225 (60%), Gaps = 11/225 (4%)
Query: 1 MDVKEVLFMNKGDGENSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVI-WNKVFNVADL 59
M+++EVL MN G+G+ SYA+NS + Q V+ KPVLE V+ L + NK VADL
Sbjct: 1 MELQEVLRMNGGEGDTSYAKNSAYNQLVLAKVKPVLEQCVRELLRANLPNINKCIKVADL 60
Query: 60 GCASNASTFSVMSSVIENVQKKCVELNAPI--PEFQLYLNDLPGNDFNTLFKGLSSFADR 117
GCAS +T + +++++ K E + P Q++LNDL NDFN++FK L SF +
Sbjct: 61 GCASGPNTLLTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFPNDFNSVFKLLPSFYRK 120
Query: 118 YND------ASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWLSKVPK-LTDEAGLPLIN 170
S + PGSFY RLFP S+ +HS Y + WLS+VP L E G+ N
Sbjct: 121 LEKENGRKIGSCLIGAMPGSFYSRLFPEESMHFLHSCYCLQWLSQVPSGLVTELGIG-TN 179
Query: 171 KGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVL 215
KG I+ SK S + V++AYL QF +DF+ FL+ S+E+ +GR++L
Sbjct: 180 KGSIYSSKASRLPVQKAYLDQFTKDFTTFLRIHSEELFSHGRMLL 224
>pdb|3B5I|A Chain A, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
pdb|3B5I|B Chain B, Crystal Structure Of Indole-3-Acetic Acid
Methyltransferase
Length = 374
Score = 135 bits (341), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/235 (32%), Positives = 120/235 (51%), Gaps = 10/235 (4%)
Query: 1 MDVKEVLFMNKGDGENSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVIWNKVFNVADLG 60
M ++ +L M G G++SYA NS +LE ++++ F DLG
Sbjct: 1 MKLERLLSMKGGKGQDSYANNSLAQAMHARSMLHLLEETLENVHLNSSASPPPFTAVDLG 60
Query: 61 CASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRY-- 118
C+S A+T ++ +++++ K+ PEF + +DLP NDFNTLF+ L
Sbjct: 61 CSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCM 120
Query: 119 -------NDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINK 171
+ S F+ G PGSFY RLFP ++ HS++ +HWLS+VP+ + N+
Sbjct: 121 EECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNR 180
Query: 172 GKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVLVFNGRPSADFT 226
G++FI AY RQF+ D + FL++R+ E+ G + LV GR S D T
Sbjct: 181 GRVFIHGAGE-KTTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPT 234
>pdb|3SE8|H Chain H, Crystal Structure Of Broadly And Potently Neutralizing
Antibody Vrc03 In Complex With Hiv-1 Gp120
Length = 233
Score = 31.2 bits (69), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 42/114 (36%), Gaps = 21/114 (18%)
Query: 149 YGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMV 208
Y +HW+ +P +KG +I P+ +Y RQ + S+ +
Sbjct: 32 YSIHWVRLIP-----------DKGFEWIGWIKPLWGAVSYARQLQGRVSMTRQLSQDPDD 80
Query: 209 PN-GRLVLVFNGRPSADFTR---------DYCYPIPWESLSEAIAAMVSEVRSN 252
P+ G + F+G AD DYC PW+ + +VS +
Sbjct: 81 PDWGVAYMEFSGLTPADTAEYFCVRRGSCDYCGDFPWQYWCQGTVVVVSSASTK 134
>pdb|2RMC|A Chain A, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|C Chain C, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|E Chain E, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
pdb|2RMC|G Chain G, Crystal Structure Of Murine Cyclophilin C Complexed With
Immunosuppressive Drug Cyclosporin A
Length = 182
Score = 29.6 bits (65), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 131 SFYGRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSP 181
S YG FP + +L H YG+ W+S AG P N + FI+ T P
Sbjct: 81 SIYGETFPDENFKLKH--YGIGWVSMA-----NAG-PDTNGSQFFITLTKP 123
>pdb|3V4P|A Chain A, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4P|C Chain C, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1
pdb|3V4V|A Chain A, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
pdb|3V4V|C Chain C, Crystal Structure Of A4b7 Headpiece Complexed With Fab
Act-1 And Ro0505376
Length = 597
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
Query: 90 PEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFY--GRLFPTN 140
P +Q Y+ G +F + G+SSF + L +MGAPGS Y G LF N
Sbjct: 149 PCYQDYVKKF-GENFASCQAGISSFYTK----DLIVMGAPGSSYWTGSLFVYN 196
>pdb|2P22|B Chain B, Structure Of The Yeast Escrt-i Heterotetramer Core
Length = 118
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 89 IPEFQLYLNDLPGNDFNTLFKGLSSFADRYN 119
+ +F++YLN + N F+ + +FAD YN
Sbjct: 75 LKQFKVYLNSQNKEEINKHFQSIEAFADTYN 105
>pdb|2F66|B Chain B, Structure Of The Escrt-I Endosomal Trafficking Complex
pdb|2F66|E Chain E, Structure Of The Escrt-I Endosomal Trafficking Complex
Length = 116
Score = 29.6 bits (65), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 89 IPEFQLYLNDLPGNDFNTLFKGLSSFADRYN 119
+ +F++YLN + N F+ + +FAD YN
Sbjct: 66 LKQFKVYLNSQNKEEINKHFQSIEAFADTYN 96
>pdb|2F6M|B Chain B, Structure Of A Vps23-C:vps28-N Subcomplex
pdb|2F6M|D Chain D, Structure Of A Vps23-C:vps28-N Subcomplex
Length = 109
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 89 IPEFQLYLNDLPGNDFNTLFKGLSSFADRYN 119
+ +F++YLN + N F+ + +FAD YN
Sbjct: 66 LKQFKVYLNSQNKEEINKHFQSIEAFADTYN 96
>pdb|2ESL|A Chain A, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|B Chain B, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|C Chain C, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|D Chain D, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|E Chain E, Human Cyclophilin C In Complex With Cyclosporin A
pdb|2ESL|F Chain F, Human Cyclophilin C In Complex With Cyclosporin A
Length = 190
Score = 29.6 bits (65), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 131 SFYGRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSP 181
S YG FP + +L H YG+ W+S AG P N + FI+ T P
Sbjct: 89 SIYGETFPDENFKLKH--YGIGWVSMA-----NAG-PDTNGSQFFITLTKP 131
>pdb|3MWF|A Chain A, Crystal Structure Of Staphylococcus Aureus Sira Complexed
With Staphyloferrin B
Length = 298
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 157 VPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRL 213
+ +LT + +PL+N IF+ K+ P A A +++ E +++ + ++ + V N ++
Sbjct: 206 IIQLTSKESIPLMNADHIFVVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNNQV 262
>pdb|3NAZ|A Chain A, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|B Chain B, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|C Chain C, Basal State Form Of Yeast Glycogen Synthase
pdb|3NAZ|D Chain D, Basal State Form Of Yeast Glycogen Synthase
pdb|3NCH|A Chain A, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|B Chain B, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|C Chain C, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3NCH|D Chain D, Yeast Glycogen Synthase (Gsy2p) Basal State Conformation
pdb|3O3C|A Chain A, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|B Chain B, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|C Chain C, Glycogen Synthase Basal State Udp Complex
pdb|3O3C|D Chain D, Glycogen Synthase Basal State Udp Complex
pdb|3RSZ|A Chain A, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|B Chain B, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|C Chain C, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
pdb|3RSZ|D Chain D, Maltodextran Bound Basal State Conformation Of Yeast
Glycogen Synthase Isoform 2
Length = 725
Score = 28.5 bits (62), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 48/113 (42%), Gaps = 20/113 (17%)
Query: 90 PEFQLYLNDLPGNDFNTLFKG--LSSFADRY-----NDASLFMMGAP---------GSFY 133
PEF N + G D++ +G L F Y A +MG P GS+
Sbjct: 498 PEFLNANNPILGLDYDEFVRGCHLGVFPSYYEPWGYTPAECTVMGVPSITTNVSGFGSYM 557
Query: 134 GRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKE 186
L TN + YG++ + + K DE+ L++ + F+ KT+ A+ +
Sbjct: 558 EDLIETNQAK----DYGIYIVDRRFKAPDESVEQLVDYMEEFVKKTAAQAINQ 606
>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains
Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma
Translocation Protein 1
Length = 218
Score = 28.5 bits (62), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 81 KCVELNAPIPEFQLYLNDLP 100
+CV + +PIP +Q + N+LP
Sbjct: 139 QCVAVGSPIPHYQWFKNELP 158
>pdb|2CAZ|B Chain B, Escrt-I Core
pdb|2CAZ|E Chain E, Escrt-I Core
Length = 155
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 89 IPEFQLYLNDLPGNDFNTLFKGLSSFADRYN 119
+ +F++YLN + N F+ + +F D YN
Sbjct: 83 LKQFKVYLNSQNKEEINKHFQSIEAFCDTYN 113
>pdb|3MWG|A Chain A, Crystal Structure Of Staphylococcus Aureus Sira
pdb|3MWG|B Chain B, Crystal Structure Of Staphylococcus Aureus Sira
Length = 279
Score = 28.1 bits (61), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 32/57 (56%)
Query: 157 VPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRL 213
+ +LT + +PL N IF+ K+ P A A +++ E +++ + ++ + V N ++
Sbjct: 187 IIQLTSKESIPLXNADHIFVVKSDPNAKDAALVKKTESEWTSSKEWKNLDAVKNNQV 243
>pdb|3BFO|A Chain A, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|B Chain B, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|C Chain C, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
pdb|3BFO|D Chain D, Crystal Structure Of Ig-Like C2-Type 2 Domain Of The Human
Mucosa-Associated Lymphoid Tissue Lymphoma Translocation
Protein 1
Length = 91
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 81 KCVELNAPIPEFQLYLNDLP 100
+CV + +PIP +Q + N+LP
Sbjct: 24 QCVAVGSPIPHYQWFKNELP 43
>pdb|3KAS|B Chain B, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
Length = 162
Score = 27.7 bits (60), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
Query: 97 NDLP-----GNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGV 151
N+LP N F + G+++F R +D S+ M S Y N L SS+ +
Sbjct: 4 NELPSLCMLNNSFYYMRGGVNTFLIRVSDISVLMKEYDVSIYEPEDLGNCLNKSDSSWAI 63
Query: 152 HWLS 155
HW S
Sbjct: 64 HWFS 67
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,679,707
Number of Sequences: 62578
Number of extensions: 307457
Number of successful extensions: 781
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 752
Number of HSP's gapped (non-prelim): 25
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)