Query 024268
Match_columns 270
No_of_seqs 126 out of 420
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 03:19:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024268.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024268hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02668 indole-3-acetate carb 100.0 1.6E-85 3.5E-90 626.5 24.7 256 1-263 13-283 (386)
2 PF03492 Methyltransf_7: SAM d 100.0 3.2E-77 7E-82 562.1 17.5 224 36-264 1-228 (334)
3 TIGR02072 BioC biotin biosynth 98.1 1E-05 2.2E-10 70.5 7.8 106 15-154 6-111 (240)
4 PRK14103 trans-aconitate 2-met 97.7 0.0001 2.2E-09 66.5 6.9 99 15-154 4-102 (255)
5 PRK01683 trans-aconitate 2-met 97.7 0.00011 2.5E-09 65.9 6.9 101 15-154 6-106 (258)
6 PRK10258 biotin biosynthesis p 97.6 0.0002 4.2E-09 64.3 7.6 99 16-154 18-116 (251)
7 PF12847 Methyltransf_18: Meth 97.2 0.00058 1.3E-08 52.9 5.2 45 54-99 3-61 (112)
8 TIGR00740 methyltransferase, p 97.2 0.0046 9.9E-08 55.2 11.3 82 52-154 53-135 (239)
9 PRK15451 tRNA cmo(5)U34 methyl 97.1 0.0075 1.6E-07 54.4 12.1 46 205-258 152-197 (247)
10 PF13489 Methyltransf_23: Meth 97.1 0.00077 1.7E-08 55.0 4.5 70 51-155 21-92 (161)
11 PF08241 Methyltransf_11: Meth 97.1 0.00054 1.2E-08 50.7 3.3 28 127-154 46-73 (95)
12 PLN02244 tocopherol O-methyltr 97.0 0.015 3.2E-07 55.2 12.9 24 131-154 176-199 (340)
13 COG2226 UbiE Methylase involve 96.8 0.0051 1.1E-07 56.1 8.1 85 52-158 51-136 (238)
14 PRK12335 tellurite resistance 96.7 0.0079 1.7E-07 55.5 8.2 19 54-72 122-140 (287)
15 PLN02233 ubiquinone biosynthes 96.6 0.012 2.5E-07 53.8 8.8 18 137-154 141-158 (261)
16 PRK00121 trmB tRNA (guanine-N( 96.6 0.0096 2.1E-07 52.2 7.8 109 24-155 14-125 (202)
17 PRK06922 hypothetical protein; 96.5 0.008 1.7E-07 62.0 8.1 116 53-216 419-536 (677)
18 PTZ00098 phosphoethanolamine N 96.5 0.012 2.7E-07 53.7 8.3 80 51-154 51-130 (263)
19 PRK11036 putative S-adenosyl-L 96.4 0.026 5.7E-07 50.9 10.1 19 137-155 108-126 (255)
20 TIGR00477 tehB tellurite resis 96.4 0.034 7.3E-07 48.4 10.2 19 53-71 31-49 (195)
21 smart00138 MeTrc Methyltransfe 96.3 0.019 4.1E-07 52.7 8.2 45 51-101 98-142 (264)
22 PF08242 Methyltransf_12: Meth 96.2 0.0079 1.7E-07 45.9 4.7 79 57-154 1-79 (99)
23 PRK11207 tellurite resistance 96.2 0.03 6.6E-07 48.8 8.9 19 53-71 31-49 (197)
24 TIGR02752 MenG_heptapren 2-hep 96.2 0.012 2.7E-07 51.7 6.2 82 52-154 45-127 (231)
25 PRK08317 hypothetical protein; 96.1 0.022 4.8E-07 49.3 7.5 84 51-155 18-101 (241)
26 TIGR03438 probable methyltrans 96.1 0.026 5.6E-07 52.6 8.1 37 34-73 48-84 (301)
27 PF03848 TehB: Tellurite resis 95.8 0.028 6E-07 49.8 6.9 67 52-155 30-108 (192)
28 smart00828 PKS_MT Methyltransf 95.6 0.037 8.1E-07 48.4 6.7 15 140-154 66-80 (224)
29 PLN02336 phosphoethanolamine N 95.6 0.035 7.7E-07 54.5 7.2 18 137-154 99-116 (475)
30 PRK15068 tRNA mo(5)U34 methylt 95.5 0.039 8.5E-07 52.1 6.9 80 53-154 123-202 (322)
31 PLN02336 phosphoethanolamine N 95.4 0.041 8.8E-07 54.1 7.1 80 52-154 266-345 (475)
32 PRK00216 ubiE ubiquinone/menaq 95.4 0.056 1.2E-06 47.1 7.1 84 53-155 52-135 (239)
33 PF01209 Ubie_methyltran: ubiE 95.3 0.066 1.4E-06 48.4 7.4 82 52-154 47-129 (233)
34 PRK06202 hypothetical protein; 95.3 0.099 2.1E-06 46.3 8.4 85 51-156 59-144 (232)
35 KOG2940 Predicted methyltransf 95.3 0.018 3.8E-07 53.0 3.6 67 137-253 133-200 (325)
36 PRK11188 rrmJ 23S rRNA methylt 95.2 0.093 2E-06 46.4 7.9 71 53-154 52-130 (209)
37 COG4106 Tam Trans-aconitate me 95.1 0.069 1.5E-06 48.6 6.9 24 135-158 86-109 (257)
38 TIGR01934 MenG_MenH_UbiE ubiqu 95.1 0.083 1.8E-06 45.5 7.3 81 52-154 39-119 (223)
39 TIGR03587 Pse_Me-ase pseudamin 95.0 0.13 2.8E-06 45.4 8.1 106 14-155 14-119 (204)
40 TIGR02716 C20_methyl_CrtF C-20 94.8 0.21 4.6E-06 46.2 9.5 78 51-152 148-226 (306)
41 PLN02396 hexaprenyldihydroxybe 94.8 0.062 1.3E-06 51.0 6.0 19 137-155 194-212 (322)
42 PLN02490 MPBQ/MSBQ methyltrans 94.7 0.08 1.7E-06 50.7 6.4 79 52-154 113-191 (340)
43 PF13847 Methyltransf_31: Meth 94.4 0.15 3.3E-06 42.0 6.8 20 52-71 3-22 (152)
44 PRK07580 Mg-protoporphyrin IX 94.3 0.29 6.3E-06 42.7 8.7 20 52-71 63-82 (230)
45 KOG1541 Predicted protein carb 94.2 0.28 6.2E-06 44.9 8.6 54 137-218 108-161 (270)
46 COG2242 CobL Precorrin-6B meth 94.2 0.47 1E-05 42.0 9.7 39 33-71 15-53 (187)
47 PF00891 Methyltransf_2: O-met 94.2 0.39 8.4E-06 42.7 9.5 105 51-224 99-206 (241)
48 TIGR00452 methyltransferase, p 93.9 0.18 3.8E-06 47.8 6.9 17 138-154 185-201 (314)
49 PF05401 NodS: Nodulation prot 93.7 0.18 3.8E-06 45.1 6.2 93 51-217 42-146 (201)
50 TIGR03534 RF_mod_PrmC protein- 93.5 0.33 7.2E-06 42.8 7.7 24 194-217 194-217 (251)
51 PTZ00146 fibrillarin; Provisio 93.4 1.8 3.8E-05 40.9 12.6 44 207-256 227-270 (293)
52 PRK05785 hypothetical protein; 93.2 0.11 2.5E-06 46.4 4.2 75 53-157 52-126 (226)
53 PF05148 Methyltransf_8: Hypot 92.9 0.095 2E-06 47.3 3.3 18 50-67 70-87 (219)
54 PRK09489 rsmC 16S ribosomal RN 92.7 0.25 5.4E-06 47.2 6.0 76 54-153 198-273 (342)
55 PRK11873 arsM arsenite S-adeno 92.4 0.47 1E-05 43.0 7.2 83 52-154 77-159 (272)
56 COG4123 Predicted O-methyltran 92.4 0.53 1.1E-05 43.4 7.5 114 51-217 43-170 (248)
57 TIGR00091 tRNA (guanine-N(7)-) 92.4 0.35 7.7E-06 41.9 6.1 20 135-154 81-100 (194)
58 PF13649 Methyltransf_25: Meth 91.9 0.4 8.7E-06 36.7 5.3 18 56-73 1-18 (101)
59 cd02440 AdoMet_MTases S-adenos 91.6 0.46 9.9E-06 34.1 5.1 16 55-70 1-16 (107)
60 COG2230 Cfa Cyclopropane fatty 91.3 0.85 1.9E-05 42.8 7.7 31 192-222 151-181 (283)
61 PRK11705 cyclopropane fatty ac 90.9 2 4.3E-05 41.7 10.1 19 52-70 167-185 (383)
62 TIGR00537 hemK_rel_arch HemK-r 90.5 0.89 1.9E-05 38.6 6.5 18 54-71 21-38 (179)
63 PF03291 Pox_MCEL: mRNA cappin 90.4 1.1 2.4E-05 42.8 7.7 44 140-218 144-187 (331)
64 PRK14121 tRNA (guanine-N(7)-)- 90.4 0.99 2.1E-05 44.2 7.5 81 54-153 124-204 (390)
65 PRK14968 putative methyltransf 90.3 6.2 0.00013 32.9 11.5 22 196-217 127-148 (188)
66 KOG1270 Methyltransferases [Co 90.0 0.78 1.7E-05 42.8 6.1 35 182-221 165-199 (282)
67 PRK15001 SAM-dependent 23S rib 90.0 1.5 3.2E-05 42.7 8.3 80 54-153 230-310 (378)
68 COG2518 Pcm Protein-L-isoaspar 89.9 1.3 2.9E-05 39.8 7.3 24 52-76 72-95 (209)
69 KOG3010 Methyltransferase [Gen 89.5 0.66 1.4E-05 42.8 5.1 16 138-153 97-112 (261)
70 TIGR01983 UbiG ubiquinone bios 88.0 2.1 4.5E-05 37.2 7.2 18 52-69 45-62 (224)
71 PRK10901 16S rRNA methyltransf 87.9 5 0.00011 39.2 10.5 25 194-218 349-373 (427)
72 KOG3045 Predicted RNA methylas 87.7 0.7 1.5E-05 43.3 4.1 19 50-68 178-196 (325)
73 PRK05134 bifunctional 3-demeth 87.1 3 6.4E-05 36.6 7.7 17 52-68 48-64 (233)
74 TIGR02021 BchM-ChlM magnesium 86.4 5.2 0.00011 34.9 8.8 20 51-70 54-73 (219)
75 PRK01544 bifunctional N5-gluta 86.4 4.6 9.9E-05 40.7 9.4 74 53-148 139-213 (506)
76 PF02353 CMAS: Mycolic acid cy 85.9 5.3 0.00012 37.0 9.0 22 52-73 62-83 (273)
77 PRK11088 rrmA 23S rRNA methylt 85.6 2.3 5.1E-05 38.7 6.4 21 52-72 85-105 (272)
78 PRK14903 16S rRNA methyltransf 84.6 2.7 5.8E-05 41.4 6.7 28 194-221 343-370 (431)
79 TIGR02081 metW methionine bios 84.1 2 4.3E-05 37.0 5.0 20 137-156 71-90 (194)
80 PLN02232 ubiquinone biosynthes 83.3 1.3 2.9E-05 37.2 3.5 18 137-154 40-57 (160)
81 KOG2904 Predicted methyltransf 83.1 3.2 6.9E-05 39.3 6.1 51 53-104 149-213 (328)
82 PRK14902 16S rRNA methyltransf 82.6 4.9 0.00011 39.4 7.6 20 53-72 251-270 (444)
83 PF06080 DUF938: Protein of un 82.1 20 0.00044 32.1 10.6 141 29-226 7-150 (204)
84 KOG1540 Ubiquinone biosynthesi 82.1 6.5 0.00014 36.9 7.6 119 51-223 99-220 (296)
85 PRK14904 16S rRNA methyltransf 80.3 15 0.00033 36.1 10.2 27 194-220 354-380 (445)
86 PHA03411 putative methyltransf 79.6 10 0.00022 35.7 8.1 26 196-221 162-187 (279)
87 PRK00274 ksgA 16S ribosomal RN 78.1 2.8 6.1E-05 38.4 4.0 49 53-106 43-103 (272)
88 TIGR00563 rsmB ribosomal RNA s 78.0 14 0.0003 36.1 9.0 128 53-220 239-371 (426)
89 PF05175 MTS: Methyltransferas 75.5 8.1 0.00018 32.6 5.9 74 53-148 32-105 (170)
90 TIGR02469 CbiT precorrin-6Y C5 74.6 2.1 4.5E-05 33.0 1.9 22 197-218 102-123 (124)
91 PRK00107 gidB 16S rRNA methylt 73.9 11 0.00025 32.8 6.5 21 51-71 44-64 (187)
92 TIGR00446 nop2p NOL1/NOP2/sun 73.0 13 0.00029 33.8 7.0 20 53-72 72-91 (264)
93 PF09851 SHOCT: Short C-termin 72.5 2.8 6.1E-05 26.2 1.7 19 240-258 6-24 (31)
94 TIGR03533 L3_gln_methyl protei 71.7 13 0.00029 34.3 6.8 19 53-71 122-140 (284)
95 PRK07402 precorrin-6B methylas 68.7 11 0.00023 32.4 5.2 19 52-70 40-58 (196)
96 PHA03412 putative methyltransf 68.7 3.1 6.7E-05 38.2 1.8 55 53-111 50-118 (241)
97 PRK01581 speE spermidine synth 68.2 25 0.00055 34.4 8.0 16 51-66 149-164 (374)
98 PRK01544 bifunctional N5-gluta 68.0 22 0.00047 35.8 7.9 106 23-153 323-429 (506)
99 PRK00312 pcm protein-L-isoaspa 67.1 22 0.00048 30.8 6.9 17 52-68 78-94 (212)
100 PRK08287 cobalt-precorrin-6Y C 66.8 3.7 8E-05 35.0 1.9 20 52-71 31-50 (187)
101 TIGR00478 tly hemolysin TlyA f 64.3 7.4 0.00016 35.2 3.4 37 32-72 59-95 (228)
102 PF05185 PRMT5: PRMT5 arginine 63.7 14 0.0003 36.9 5.4 120 36-182 170-308 (448)
103 PF02390 Methyltransf_4: Putat 63.4 19 0.00042 31.5 5.8 80 55-153 20-100 (195)
104 PF02268 TFIIA_gamma_N: Transc 63.4 8 0.00017 27.0 2.7 22 234-255 11-32 (49)
105 smart00650 rADc Ribosomal RNA 62.6 13 0.00028 31.2 4.4 20 53-72 14-33 (169)
106 TIGR00536 hemK_fam HemK family 58.8 30 0.00065 31.8 6.5 18 54-71 116-133 (284)
107 PF01728 FtsJ: FtsJ-like methy 58.5 9.2 0.0002 32.3 2.8 52 35-102 8-59 (181)
108 TIGR00080 pimt protein-L-isoas 58.4 12 0.00027 32.6 3.7 19 52-70 77-95 (215)
109 COG2813 RsmC 16S RNA G1207 met 58.1 13 0.00029 35.2 4.0 30 54-98 160-189 (300)
110 PRK11805 N5-glutamine S-adenos 57.6 32 0.0007 32.2 6.6 18 54-71 135-152 (307)
111 PRK04266 fibrillarin; Provisio 57.5 6 0.00013 35.6 1.6 43 205-253 164-206 (226)
112 TIGR00138 gidB 16S rRNA methyl 56.3 8.2 0.00018 33.3 2.2 18 53-70 43-60 (181)
113 PRK14966 unknown domain/N5-glu 56.1 25 0.00055 34.9 5.7 56 196-267 360-415 (423)
114 PRK14896 ksgA 16S ribosomal RN 55.9 30 0.00064 31.4 5.9 48 53-104 30-89 (258)
115 PRK03522 rumB 23S rRNA methylu 52.8 16 0.00036 34.1 3.7 20 53-72 174-193 (315)
116 PLN02585 magnesium protoporphy 52.6 17 0.00037 34.5 3.8 21 52-72 144-164 (315)
117 KOG0451 Predicted 2-oxoglutara 52.4 24 0.00051 36.6 4.9 71 174-258 390-474 (913)
118 PRK13944 protein-L-isoaspartat 51.3 17 0.00036 31.7 3.3 19 53-71 73-91 (205)
119 PF13679 Methyltransf_32: Meth 50.8 27 0.00059 28.5 4.4 40 29-72 6-45 (141)
120 TIGR03439 methyl_EasF probable 50.7 44 0.00095 31.8 6.3 82 35-134 62-143 (319)
121 PTZ00338 dimethyladenosine tra 48.8 21 0.00046 33.4 3.8 52 53-105 37-100 (294)
122 COG2263 Predicted RNA methylas 48.5 9.2 0.0002 34.2 1.2 44 52-98 45-101 (198)
123 TIGR00438 rrmJ cell division p 48.5 20 0.00044 30.5 3.4 23 195-217 124-146 (188)
124 PF03962 Mnd1: Mnd1 family; I 48.4 12 0.00026 32.9 1.9 29 234-263 28-56 (188)
125 TIGR03704 PrmC_rel_meth putati 47.2 19 0.00041 32.7 3.1 19 53-71 87-105 (251)
126 PRK03612 spermidine synthase; 46.9 63 0.0014 32.6 7.1 19 51-69 296-314 (521)
127 TIGR03840 TMPT_Se_Te thiopurin 46.8 21 0.00046 31.7 3.3 19 53-71 35-53 (213)
128 PRK10079 phosphonate metabolis 46.5 16 0.00036 32.5 2.6 52 190-255 15-69 (241)
129 PRK13942 protein-L-isoaspartat 46.4 23 0.00049 31.1 3.4 20 52-71 76-95 (212)
130 PF08123 DOT1: Histone methyla 46.0 38 0.00082 30.1 4.8 55 53-107 43-118 (205)
131 PRK13255 thiopurine S-methyltr 45.9 23 0.00049 31.6 3.4 36 32-72 22-57 (218)
132 PRK04148 hypothetical protein; 45.1 49 0.0011 27.7 5.0 15 52-66 16-30 (134)
133 PF07021 MetW: Methionine bios 45.1 16 0.00035 32.5 2.2 19 137-155 71-89 (193)
134 PRK10909 rsmD 16S rRNA m(2)G96 44.6 21 0.00046 31.5 2.9 19 54-72 55-73 (199)
135 PRK00377 cbiT cobalt-precorrin 44.2 15 0.00032 31.7 1.9 19 51-69 39-57 (198)
136 TIGR00406 prmA ribosomal prote 44.0 23 0.00049 32.7 3.2 15 54-68 161-175 (288)
137 PF12147 Methyltransf_20: Puta 43.8 43 0.00093 32.0 4.9 60 27-99 110-169 (311)
138 KOG3178 Hydroxyindole-O-methyl 43.7 2.6E+02 0.0056 27.2 10.3 100 51-221 176-279 (342)
139 PRK09328 N5-glutamine S-adenos 43.0 19 0.00041 32.2 2.4 20 52-71 108-127 (275)
140 PRK00517 prmA ribosomal protei 42.2 20 0.00044 32.2 2.5 15 53-67 120-134 (250)
141 PF06325 PrmA: Ribosomal prote 40.0 28 0.00061 32.8 3.1 15 54-68 163-177 (295)
142 PF03514 GRAS: GRAS domain fam 39.8 97 0.0021 29.9 6.9 45 51-103 109-153 (374)
143 COG5124 Protein predicted to b 39.2 23 0.00049 31.4 2.2 30 233-263 40-69 (209)
144 COG2264 PrmA Ribosomal protein 39.0 16 0.00034 34.7 1.2 17 52-68 162-178 (300)
145 PRK00811 spermidine synthase; 38.4 55 0.0012 30.2 4.8 21 51-71 75-95 (283)
146 PF13659 Methyltransf_26: Meth 37.5 25 0.00053 26.9 2.0 24 195-218 93-116 (117)
147 KOG3463 Transcription initiati 37.0 33 0.00071 27.8 2.6 21 234-254 12-32 (109)
148 KOG4589 Cell division protein 36.1 35 0.00075 30.9 2.9 20 51-70 68-87 (232)
149 KOG2361 Predicted methyltransf 35.8 55 0.0012 30.5 4.2 71 17-102 30-108 (264)
150 PRK14967 putative methyltransf 35.8 16 0.00034 32.2 0.7 26 195-220 137-162 (223)
151 TIGR00755 ksgA dimethyladenosi 35.2 37 0.0008 30.5 3.0 50 52-105 29-90 (253)
152 COG2890 HemK Methylase of poly 34.9 29 0.00064 32.2 2.4 30 55-99 113-142 (280)
153 TIGR02469 CbiT precorrin-6Y C5 34.8 27 0.00058 26.6 1.8 19 53-71 20-38 (124)
154 KOG1975 mRNA cap methyltransfe 34.4 94 0.002 30.3 5.7 58 128-220 178-240 (389)
155 PRK02289 4-oxalocrotonate taut 33.5 77 0.0017 22.1 3.9 40 64-104 11-51 (60)
156 PF09597 IGR: IGR protein moti 33.2 34 0.00074 24.6 2.0 27 186-212 13-39 (57)
157 PRK11760 putative 23S rRNA C24 33.0 46 0.001 32.4 3.4 42 30-71 186-230 (357)
158 PRK13168 rumA 23S rRNA m(5)U19 32.9 46 0.00099 32.7 3.5 20 53-72 298-317 (443)
159 KOG3191 Predicted N6-DNA-methy 32.3 57 0.0012 29.3 3.6 36 33-73 29-64 (209)
160 TIGR00417 speE spermidine synt 32.2 92 0.002 28.3 5.2 20 51-70 71-90 (270)
161 TIGR00095 RNA methyltransferas 31.5 48 0.001 28.7 3.1 19 54-72 51-69 (189)
162 PF08003 Methyltransf_9: Prote 31.0 25 0.00054 33.6 1.2 46 53-115 116-161 (315)
163 PRK13943 protein-L-isoaspartat 28.2 60 0.0013 30.9 3.3 20 53-72 81-100 (322)
164 PHA02734 coat protein; Provisi 27.3 40 0.00088 28.2 1.7 38 65-102 49-89 (149)
165 COG1189 Predicted rRNA methyla 27.2 69 0.0015 29.6 3.3 36 33-72 64-99 (245)
166 cd00491 4Oxalocrotonate_Tautom 27.1 1.9E+02 0.004 19.4 4.9 43 61-104 7-50 (58)
167 PF02167 Cytochrom_C1: Cytochr 25.9 71 0.0015 29.0 3.2 48 128-201 133-180 (219)
168 PLN03075 nicotianamine synthas 25.6 46 0.00099 31.5 2.0 20 52-71 123-142 (296)
169 PF01361 Tautomerase: Tautomer 25.2 1.3E+02 0.0028 20.7 3.8 46 58-104 4-50 (60)
170 TIGR00479 rumA 23S rRNA (uraci 25.0 66 0.0014 31.3 3.1 19 53-71 293-311 (431)
171 TIGR02404 trehalos_R_Bsub treh 24.7 54 0.0012 28.9 2.2 52 191-255 4-58 (233)
172 PF07757 AdoMet_MTase: Predict 24.6 37 0.0008 27.7 1.0 13 52-64 58-70 (112)
173 COG4976 Predicted methyltransf 24.0 38 0.00082 31.5 1.1 25 194-218 202-226 (287)
174 cd05721 IgV_CTLA-4 Immunoglobu 23.9 42 0.00091 27.4 1.2 28 136-168 10-45 (115)
175 TIGR02018 his_ut_repres histid 23.6 67 0.0015 28.2 2.6 52 191-255 5-59 (230)
176 PF10357 Kin17_mid: Domain of 23.5 71 0.0015 26.6 2.5 69 181-257 10-83 (127)
177 TIGR02085 meth_trns_rumB 23S r 23.4 78 0.0017 30.4 3.2 20 54-73 235-254 (374)
178 COG2384 Predicted SAM-dependen 23.3 1.2E+02 0.0027 27.7 4.2 17 55-71 19-35 (226)
179 TIGR02325 C_P_lyase_phnF phosp 23.1 57 0.0012 28.6 2.0 52 191-255 12-66 (238)
180 COG1942 Uncharacterized protei 22.8 2.6E+02 0.0055 20.7 5.1 45 60-104 7-52 (69)
181 PRK00745 4-oxalocrotonate taut 21.8 1.4E+02 0.0031 20.4 3.5 44 61-105 8-52 (62)
182 TIGR01444 fkbM_fam methyltrans 21.6 45 0.00097 26.5 1.0 17 55-71 1-17 (143)
183 COG5123 TOA2 Transcription ini 21.3 88 0.0019 25.2 2.5 22 234-255 13-34 (113)
184 PF08714 Fae: Formaldehyde-act 20.1 1.1E+02 0.0025 26.4 3.1 31 231-261 76-106 (159)
No 1
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=100.00 E-value=1.6e-85 Score=626.47 Aligned_cols=256 Identities=35% Similarity=0.588 Sum_probs=235.1
Q ss_pred CCccceeeccCCCCCchHHhhCHHHHHHHHHhHHHHHHHHHHhhcccccCC-ceeEEeeecCCCCccchHHHHHHHHHHH
Q 024268 1 MDVKEVLFMNKGDGENSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVIWN-KVFNVADLGCASNASTFSVMSSVIENVQ 79 (270)
Q Consensus 1 m~~~~~l~M~gG~G~~sY~~NS~~Q~~~i~~~~p~le~ai~~~~~~~~~~~-~~~~IADlGCS~G~NSl~~v~~ii~~i~ 79 (270)
|+++++|||+||+|++||++||..|++++..++|+|++||++++... .+ ++++|||||||+|+||+.+|++||++|+
T Consensus 13 m~~~~~l~M~gG~g~~SYa~nS~~Q~~~~~~~k~~leeai~~~~~~~--~p~~~~~iaDlGcs~G~ntl~~vs~iI~~i~ 90 (386)
T PLN02668 13 MKLEKLLCMKGGKGEGSYANNSQAQALHARSMLHLLEETLDNVHLNS--SPEVPFTAVDLGCSSGSNTIHIIDVIVKHMS 90 (386)
T ss_pred ceeccccccCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCcceeEEEecCCCCccHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999987543 35 7999999999999999999999999999
Q ss_pred HHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhcc---------C-CCceeeeccCCccccCCcCCCceeEEEccc
Q 024268 80 KKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRY---------N-DASLFMMGAPGSFYGRLFPTNSLQLVHSSY 149 (270)
Q Consensus 80 ~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~---------~-~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~ 149 (270)
++|.+.++++|||||||||||+||||+||++||.+++.+ . .++||++|||||||+||||++||||+||+|
T Consensus 91 ~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~~f~~gvpGSFY~RLfP~~Slh~~~Ss~ 170 (386)
T PLN02668 91 KRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRSYFAAGVPGSFYRRLFPARSIDVFHSAF 170 (386)
T ss_pred HHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCceEEEecCccccccccCCCceEEEEeec
Confidence 999887778899999999999999999999999876632 1 146999999999999999999999999999
Q ss_pred ccccccCCCC-CcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhccccccccCceEEEEeecCCCCCCCC-
Q 024268 150 GVHWLSKVPK-LTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVLVFNGRPSADFTR- 227 (270)
Q Consensus 150 alHWLS~~P~-v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~~~~~~~- 227 (270)
|||||||+|+ +.|+.++.| |||+|||+.++ ++|.+||++||++||..||++||+||+|||+||++++||++.+++.
T Consensus 171 slHWLS~vP~~l~d~~s~~~-Nkg~iyi~~~s-~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~~Gr~~~~~~~~ 248 (386)
T PLN02668 171 SLHWLSQVPESVTDKRSAAY-NKGRVFIHGAS-ESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVCLGRTSVDPTDQ 248 (386)
T ss_pred cceecccCchhhccCCcccc-cCCceEecCCC-HHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEEecCCCCCcccC
Confidence 9999999999 888888888 99999999877 7899999999999999999999999999999999999999877776
Q ss_pred C-CCCcchHHH-HHHHHHHHHHccCCCchhhccccccc
Q 024268 228 D-YCYPIPWES-LSEAIAAMVSEVRSNFQSFLSSLKLD 263 (270)
Q Consensus 228 ~-~~~~~~~~~-l~~~l~dmv~eGli~~ee~~~~~~~~ 263 (270)
+ .+. +|+. ++++|+|||.||+|++||+ +++|+|
T Consensus 249 ~~~~~--~~~~~l~~al~dlv~eGlI~eek~-dsFniP 283 (386)
T PLN02668 249 GGAGL--LFGTHFQDAWDDLVQEGLVTSEKR-DSFNIP 283 (386)
T ss_pred CchhH--HHHHHHHHHHHHHHHcCCCCHHHH-hcccCc
Confidence 3 344 7887 9999999999999999999 667765
No 2
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=100.00 E-value=3.2e-77 Score=562.06 Aligned_cols=224 Identities=46% Similarity=0.842 Sum_probs=189.8
Q ss_pred HHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcC-CCCCceEEEecCCCCCchHHHHhcchhh
Q 024268 36 LESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELN-APIPEFQLYLNDLPGNDFNTLFKGLSSF 114 (270)
Q Consensus 36 le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~-~~~peiqv~~nDLP~NDFntLF~~L~~~ 114 (270)
||+||++++...+ .+++++|||||||+|+||+.+|+.||++|+++|.+.+ +++|||||||||||+||||+||++||.+
T Consensus 1 ~~~ai~~~~~~~~-~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~ 79 (334)
T PF03492_consen 1 LEEAIKELYNSSN-NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSF 79 (334)
T ss_dssp -HHHHHHHHHSTT-TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHH
T ss_pred ChHHHHHHHhcCC-CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhh
Confidence 6899999986542 6899999999999999999999999999999998766 7889999999999999999999999999
Q ss_pred hhccCC-CceeeeccCCccccCCcCCCceeEEEcccccccccCCCC-CcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHH
Q 024268 115 ADRYND-ASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWLSKVPK-LTDEAGLPLINKGKIFISKTSPVAVKEAYLRQF 192 (270)
Q Consensus 115 ~~~~~~-~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWLS~~P~-v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~ 192 (270)
.+++.+ ++||++|||||||+||||++||||+||++|||||||+|+ +.++.++.+ |||+|||+.+++++|.+||++||
T Consensus 80 ~~~~~~~~~~f~~gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~-Nkg~i~~~~~~~~~v~~ay~~Qf 158 (334)
T PF03492_consen 80 QQSLKKFRNYFVSGVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAW-NKGNIYISRTSPPEVAKAYAKQF 158 (334)
T ss_dssp HHHHHHTTSEEEEEEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTT-STTTSSSSTTS-HHHHHHHHHHH
T ss_pred hhccCCCceEEEEecCchhhhccCCCCceEEEEEechhhhcccCCccccccccccc-ccCcEEEecCCCHHHHHHHHHHH
Confidence 877764 899999999999999999999999999999999999999 999999999 99999999999999999999999
Q ss_pred HHHHHHHHhccccccccCceEEEEeecCCCCCCCC-CCCCcchHHHHHHHHHHHHHccCCCchhhcccccccc
Q 024268 193 EEDFSLFLKSRSQEMVPNGRLVLVFNGRPSADFTR-DYCYPIPWESLSEAIAAMVSEVRSNFQSFLSSLKLDR 264 (270)
Q Consensus 193 ~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~~~~~~~-~~~~~~~~~~l~~~l~dmv~eGli~~ee~~~~~~~~~ 264 (270)
++||.+||++||+||||||+|||+++||++.++.. +.+. +|++|+++|+|||.||+|++||+ +++|+|-
T Consensus 159 ~~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~--~~~~l~~~l~dMv~eGlI~~ek~-dsfniP~ 228 (334)
T PF03492_consen 159 QKDFSSFLKARAEELVPGGRMVLTFLGRDEEDPSSTGSCM--LWDLLADALRDMVAEGLISEEKV-DSFNIPI 228 (334)
T ss_dssp HHHHHHHHHHHHHHEEEEEEEEEEEEE-STSSTTSTTCCC--HHHHHHHHHHHHHHTTSS-HCCC-CTG--SB
T ss_pred HHHHHHHHHHhhheeccCcEEEEEEeeccccccccCCcch--HHHHHHHHHHHHHHcCCcCHHHh-hceeCCc
Confidence 99999999999999999999999999999977665 4444 99999999999999999999999 7777763
No 3
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.10 E-value=1e-05 Score=70.51 Aligned_cols=106 Identities=17% Similarity=0.279 Sum_probs=66.7
Q ss_pred CchHHhhCHHHHHHHHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEE
Q 024268 15 ENSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQL 94 (270)
Q Consensus 15 ~~sY~~NS~~Q~~~i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv 94 (270)
..+|.+.+..|+.......+.+... . ..++.+|.|+||++|..+..+. +. .|..++
T Consensus 6 ~~~y~~~~~~q~~~~~~l~~~~~~~-------~--~~~~~~vLDlG~G~G~~~~~l~--------~~-------~~~~~~ 61 (240)
T TIGR02072 6 AKTYDRHAKIQREMAKRLLALLKEK-------G--IFIPASVLDIGCGTGYLTRALL--------KR-------FPQAEF 61 (240)
T ss_pred hhchhHHHHHHHHHHHHHHHHhhhh-------c--cCCCCeEEEECCCccHHHHHHH--------Hh-------CCCCcE
Confidence 3578888888987666555544421 1 1335789999999997654332 22 134667
Q ss_pred EecCCCCCchHHHHhcchhhhhccCCCceeeeccCCccccCCcCCCceeEEEcccccccc
Q 024268 95 YLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 95 ~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
+..|......+..-+.++. +-.| +-+++....+|+++.|++++..++||+
T Consensus 62 ~~~D~~~~~~~~~~~~~~~-------~~~~---~~~d~~~~~~~~~~fD~vi~~~~l~~~ 111 (240)
T TIGR02072 62 IALDISAGMLAQAKTKLSE-------NVQF---ICGDAEKLPLEDSSFDLIVSNLALQWC 111 (240)
T ss_pred EEEeChHHHHHHHHHhcCC-------CCeE---EecchhhCCCCCCceeEEEEhhhhhhc
Confidence 8888755444443333321 1112 334555566789999999999999995
No 4
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.68 E-value=0.0001 Score=66.49 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=57.7
Q ss_pred CchHHhhCHHHHHHHHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEE
Q 024268 15 ENSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQL 94 (270)
Q Consensus 15 ~~sY~~NS~~Q~~~i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv 94 (270)
...|.+++..|.+.+... ++ .+. ....-+|.|+||.+|..+. .+.++. |..+|
T Consensus 4 ~~~y~~~~~~~~~~~~~l---l~----~l~-----~~~~~~vLDlGcG~G~~~~--------~l~~~~-------p~~~v 56 (255)
T PRK14103 4 PDVYLAFADHRGRPFYDL---LA----RVG-----AERARRVVDLGCGPGNLTR--------YLARRW-------PGAVI 56 (255)
T ss_pred HHHHHHHHhHhhCHHHHH---HH----hCC-----CCCCCEEEEEcCCCCHHHH--------HHHHHC-------CCCEE
Confidence 357999999997655432 22 111 2345799999999996543 223221 33567
Q ss_pred EecCCCCCchHHHHhcchhhhhccCCCceeeeccCCccccCCcCCCceeEEEcccccccc
Q 024268 95 YLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 95 ~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
+.-|+-. +.-...+. ++ +..+-+.+ ..+.|.++.|+++|..++||+
T Consensus 57 ~gvD~s~-~~~~~a~~----------~~--~~~~~~d~-~~~~~~~~fD~v~~~~~l~~~ 102 (255)
T PRK14103 57 EALDSSP-EMVAAARE----------RG--VDARTGDV-RDWKPKPDTDVVVSNAALQWV 102 (255)
T ss_pred EEEECCH-HHHHHHHh----------cC--CcEEEcCh-hhCCCCCCceEEEEehhhhhC
Confidence 7777521 11111111 11 11122333 345678899999999999996
No 5
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.66 E-value=0.00011 Score=65.94 Aligned_cols=101 Identities=19% Similarity=0.260 Sum_probs=56.4
Q ss_pred CchHHhhCHHHHHHHHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEE
Q 024268 15 ENSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQL 94 (270)
Q Consensus 15 ~~sY~~NS~~Q~~~i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv 94 (270)
...|.+++..|.+.... ++. .+. ..+.-+|+|+||.+|..+..+. +++ |.-+|
T Consensus 6 ~~~Y~~~~~~~~~~~~~---ll~----~~~-----~~~~~~vLDiGcG~G~~~~~la--------~~~-------~~~~v 58 (258)
T PRK01683 6 PSLYLKFEDERTRPARD---LLA----RVP-----LENPRYVVDLGCGPGNSTELLV--------ERW-------PAARI 58 (258)
T ss_pred HHHHHHHHHHhhcHHHH---HHh----hCC-----CcCCCEEEEEcccCCHHHHHHH--------HHC-------CCCEE
Confidence 45799988888655332 222 111 2345799999999997765332 221 33567
Q ss_pred EecCCCCCchHHHHhcchhhhhccCCCceeeeccCCccccCCcCCCceeEEEcccccccc
Q 024268 95 YLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 95 ~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
+..|+-.. .-...+. .. .+--|.. +.+- .+.|+++.|+++|..++||+
T Consensus 59 ~gvD~s~~-~i~~a~~------~~-~~~~~~~---~d~~-~~~~~~~fD~v~~~~~l~~~ 106 (258)
T PRK01683 59 TGIDSSPA-MLAEARS------RL-PDCQFVE---ADIA-SWQPPQALDLIFANASLQWL 106 (258)
T ss_pred EEEECCHH-HHHHHHH------hC-CCCeEEE---Cchh-ccCCCCCccEEEEccChhhC
Confidence 77775432 1111110 11 0111222 2222 34577899999999999995
No 6
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.61 E-value=0.0002 Score=64.26 Aligned_cols=99 Identities=19% Similarity=0.272 Sum_probs=53.3
Q ss_pred chHHhhCHHHHHHHHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEE
Q 024268 16 NSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLY 95 (270)
Q Consensus 16 ~sY~~NS~~Q~~~i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~ 95 (270)
..|.++...|+.........+. ....-+|.|+||.+|..+..+ .++ ..+|+
T Consensus 18 ~~Y~~~~~~q~~~a~~l~~~l~------------~~~~~~vLDiGcG~G~~~~~l--------~~~---------~~~v~ 68 (251)
T PRK10258 18 AHYEQHAELQRQSADALLAMLP------------QRKFTHVLDAGCGPGWMSRYW--------RER---------GSQVT 68 (251)
T ss_pred HhHhHHHHHHHHHHHHHHHhcC------------ccCCCeEEEeeCCCCHHHHHH--------HHc---------CCeEE
Confidence 3577777777765444322221 123457999999999765432 221 14667
Q ss_pred ecCCCCCchHHHHhcchhhhhccCCCceeeeccCCccccCCcCCCceeEEEcccccccc
Q 024268 96 LNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 96 ~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
..|+-.. .+..-.... ....|+. +..-.--+|+++.|+++|+.++||.
T Consensus 69 ~~D~s~~-------~l~~a~~~~-~~~~~~~---~d~~~~~~~~~~fD~V~s~~~l~~~ 116 (251)
T PRK10258 69 ALDLSPP-------MLAQARQKD-AADHYLA---GDIESLPLATATFDLAWSNLAVQWC 116 (251)
T ss_pred EEECCHH-------HHHHHHhhC-CCCCEEE---cCcccCcCCCCcEEEEEECchhhhc
Confidence 7775321 010000000 0112222 2333334788899999999999994
No 7
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=97.23 E-value=0.00058 Score=52.92 Aligned_cols=45 Identities=18% Similarity=0.304 Sum_probs=31.5
Q ss_pred eEEeeecCCCCccchHHHH--------------HHHHHHHHHHhhcCCCCCceEEEecCC
Q 024268 54 FNVADLGCASNASTFSVMS--------------SVIENVQKKCVELNAPIPEFQLYLNDL 99 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v~--------------~ii~~i~~~~~~~~~~~peiqv~~nDL 99 (270)
-+|.|+||.+|..++.+.+ ..++..+++..+. ...+.++++..|.
T Consensus 3 ~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 3 GRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-GLSDRITFVQGDA 61 (112)
T ss_dssp CEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-TTTTTEEEEESCC
T ss_pred CEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-CCCCCeEEEECcc
Confidence 4799999999999998877 5666666665332 2234577777664
No 8
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.21 E-value=0.0046 Score=55.17 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=43.5
Q ss_pred ceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhc-chhhhhccCCCceeeeccCC
Q 024268 52 KVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKG-LSSFADRYNDASLFMMGAPG 130 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~-L~~~~~~~~~~~~f~~~vpg 130 (270)
..-+|+|+||.+|..+..+.. +. ..|..+++.-|+-. +.-...+. +... -...+ +..+-+
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~--------~~-----~~p~~~v~gvD~s~-~ml~~a~~~~~~~---~~~~~--v~~~~~ 113 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARR--------NI-----NQPNVKIIGIDNSQ-PMVERCRQHIAAY---HSEIP--VEILCN 113 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHH--------hc-----CCCCCeEEEEeCCH-HHHHHHHHHHHhc---CCCCC--eEEEEC
Confidence 346899999999977654432 11 12456777777532 12111111 1110 00112 222345
Q ss_pred ccccCCcCCCceeEEEcccccccc
Q 024268 131 SFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 131 SFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
++..--+| +.|++++.+++||+
T Consensus 114 d~~~~~~~--~~d~v~~~~~l~~~ 135 (239)
T TIGR00740 114 DIRHVEIK--NASMVILNFTLQFL 135 (239)
T ss_pred ChhhCCCC--CCCEEeeecchhhC
Confidence 55443334 46789999999996
No 9
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=97.14 E-value=0.0075 Score=54.38 Aligned_cols=46 Identities=17% Similarity=-0.041 Sum_probs=27.3
Q ss_pred cccccCceEEEEeecCCCCCCCCCCCCcchHHHHHHHHHHHHHccCCCchhhcc
Q 024268 205 QEMVPNGRLVLVFNGRPSADFTRDYCYPIPWESLSEAIAAMVSEVRSNFQSFLS 258 (270)
Q Consensus 205 ~EL~~GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~dmv~eGli~~ee~~~ 258 (270)
+=|+|||.+++.=.-+..+.. ..+.+...|.++....=.+++|+..
T Consensus 152 ~~LkpGG~l~l~e~~~~~~~~--------~~~~~~~~~~~~~~~~g~s~~ei~~ 197 (247)
T PRK15451 152 QGLNPGGALVLSEKFSFEDAK--------VGELLFNMHHDFKRANGYSELEISQ 197 (247)
T ss_pred HhcCCCCEEEEEEecCCCcch--------hHHHHHHHHHHHHHHcCCCHHHHHH
Confidence 347899999887433322211 2244556677776666677766643
No 10
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.07 E-value=0.00077 Score=55.03 Aligned_cols=70 Identities=19% Similarity=0.232 Sum_probs=41.7
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCC
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPG 130 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpg 130 (270)
++..+|.|+||..|.++. .+++. + .++...|.-...-.. ...++.
T Consensus 21 ~~~~~vLDiGcG~G~~~~--------~l~~~--------~-~~~~g~D~~~~~~~~------------------~~~~~~ 65 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLR--------ALAKR--------G-FEVTGVDISPQMIEK------------------RNVVFD 65 (161)
T ss_dssp TTTSEEEEESSTTSHHHH--------HHHHT--------T-SEEEEEESSHHHHHH------------------TTSEEE
T ss_pred CCCCEEEEEcCCCCHHHH--------HHHHh--------C-CEEEEEECCHHHHhh------------------hhhhhh
Confidence 456899999999996532 23322 1 366666643211111 001111
Q ss_pred ccc--cCCcCCCceeEEEccccccccc
Q 024268 131 SFY--GRLFPTNSLQLVHSSYGVHWLS 155 (270)
Q Consensus 131 SFY--~rLfP~~Svh~~~Ss~alHWLS 155 (270)
.|. ...+|+++.|+++++.+|||+.
T Consensus 66 ~~~~~~~~~~~~~fD~i~~~~~l~~~~ 92 (161)
T PF13489_consen 66 NFDAQDPPFPDGSFDLIICNDVLEHLP 92 (161)
T ss_dssp EEECHTHHCHSSSEEEEEEESSGGGSS
T ss_pred hhhhhhhhccccchhhHhhHHHHhhcc
Confidence 121 3345889999999999999964
No 11
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.06 E-value=0.00054 Score=50.75 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=21.5
Q ss_pred ccCCccccCCcCCCceeEEEcccccccc
Q 024268 127 GAPGSFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 127 ~vpgSFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
-+-+++..--||++|+|++++..++||+
T Consensus 46 ~~~~d~~~l~~~~~sfD~v~~~~~~~~~ 73 (95)
T PF08241_consen 46 FRQGDAEDLPFPDNSFDVVFSNSVLHHL 73 (95)
T ss_dssp EEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred heeehHHhCccccccccccccccceeec
Confidence 4445566668999999999999999997
No 12
>PLN02244 tocopherol O-methyltransferase
Probab=96.97 E-value=0.015 Score=55.18 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=18.5
Q ss_pred ccccCCcCCCceeEEEcccccccc
Q 024268 131 SFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 131 SFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
....--||+++.|++++..++|++
T Consensus 176 D~~~~~~~~~~FD~V~s~~~~~h~ 199 (340)
T PLN02244 176 DALNQPFEDGQFDLVWSMESGEHM 199 (340)
T ss_pred CcccCCCCCCCccEEEECCchhcc
Confidence 334444789999999999998874
No 13
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=96.83 E-value=0.0051 Score=56.14 Aligned_cols=85 Identities=15% Similarity=0.191 Sum_probs=50.6
Q ss_pred ceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCC-CceeeeccCC
Q 024268 52 KVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYND-ASLFMMGAPG 130 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~-~~~f~~~vpg 130 (270)
+..+|+|+||.+|--++.+. +.. ++-+|..-|.-.+=.+ + -.++..+ ...-+.-|=|
T Consensus 51 ~g~~vLDva~GTGd~a~~~~--------k~~-------g~g~v~~~D~s~~ML~-----~--a~~k~~~~~~~~i~fv~~ 108 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLA--------KSV-------GTGEVVGLDISESMLE-----V--AREKLKKKGVQNVEFVVG 108 (238)
T ss_pred CCCEEEEecCCccHHHHHHH--------Hhc-------CCceEEEEECCHHHHH-----H--HHHHhhccCccceEEEEe
Confidence 46999999999996655433 221 1355555553322111 1 1122222 1111444455
Q ss_pred ccccCCcCCCceeEEEcccccccccCCC
Q 024268 131 SFYGRLFPTNSLQLVHSSYGVHWLSKVP 158 (270)
Q Consensus 131 SFY~rLfP~~Svh~~~Ss~alHWLS~~P 158 (270)
..-+=-||++|.|.+..+++||++.+.+
T Consensus 109 dAe~LPf~D~sFD~vt~~fglrnv~d~~ 136 (238)
T COG2226 109 DAENLPFPDNSFDAVTISFGLRNVTDID 136 (238)
T ss_pred chhhCCCCCCccCEEEeeehhhcCCCHH
Confidence 5555559999999999999999976544
No 14
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=96.65 E-value=0.0079 Score=55.49 Aligned_cols=19 Identities=21% Similarity=0.410 Sum_probs=15.9
Q ss_pred eEEeeecCCCCccchHHHH
Q 024268 54 FNVADLGCASNASTFSVMS 72 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v~ 72 (270)
-+|.|+||.+|.|++.+..
T Consensus 122 ~~vLDlGcG~G~~~~~la~ 140 (287)
T PRK12335 122 GKALDLGCGQGRNSLYLAL 140 (287)
T ss_pred CCEEEeCCCCCHHHHHHHH
Confidence 3899999999999886643
No 15
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=96.59 E-value=0.012 Score=53.81 Aligned_cols=18 Identities=17% Similarity=0.392 Sum_probs=16.7
Q ss_pred cCCCceeEEEcccccccc
Q 024268 137 FPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWL 154 (270)
||++|.|++++++++||+
T Consensus 141 ~~~~sfD~V~~~~~l~~~ 158 (261)
T PLN02233 141 FDDCYFDAITMGYGLRNV 158 (261)
T ss_pred CCCCCEeEEEEecccccC
Confidence 788999999999999985
No 16
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=96.57 E-value=0.0096 Score=52.23 Aligned_cols=109 Identities=17% Similarity=0.154 Sum_probs=54.6
Q ss_pred HHHHHHHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCc
Q 024268 24 FTQRVIELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGND 103 (270)
Q Consensus 24 ~Q~~~i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~ND 103 (270)
+|+.+.....|.+-....+..... ....-+|.|+||++|..++.+.. ++ |..+|+..|.-..=
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~VLDiGcGtG~~~~~la~--------~~-------p~~~v~gVD~s~~~ 76 (202)
T PRK00121 14 GQQRAIEELWPRLSPAPLDWAELF--GNDAPIHLEIGFGKGEFLVEMAK--------AN-------PDINFIGIEVHEPG 76 (202)
T ss_pred chhhhhcccchhhcCCCCCHHHHc--CCCCCeEEEEccCCCHHHHHHHH--------HC-------CCccEEEEEechHH
Confidence 456666666666633332222111 12457899999999987664432 11 22445555533221
Q ss_pred hHHHHhcchhhhhccCCCceeeeccCCcc---ccCCcCCCceeEEEccccccccc
Q 024268 104 FNTLFKGLSSFADRYNDASLFMMGAPGSF---YGRLFPTNSLQLVHSSYGVHWLS 155 (270)
Q Consensus 104 FntLF~~L~~~~~~~~~~~~f~~~vpgSF---Y~rLfP~~Svh~~~Ss~alHWLS 155 (270)
-..+-+.+.. ... .++.+ +-++. +.+.+|++++|.+++.++.+|..
T Consensus 77 i~~a~~~~~~--~~~--~~v~~--~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~ 125 (202)
T PRK00121 77 VGKALKKIEE--EGL--TNLRL--LCGDAVEVLLDMFPDGSLDRIYLNFPDPWPK 125 (202)
T ss_pred HHHHHHHHHH--cCC--CCEEE--EecCHHHHHHHHcCccccceEEEECCCCCCC
Confidence 1111111110 000 12211 12222 33457888999999988877743
No 17
>PRK06922 hypothetical protein; Provisional
Probab=96.54 E-value=0.008 Score=62.04 Aligned_cols=116 Identities=19% Similarity=0.203 Sum_probs=63.1
Q ss_pred eeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCc-eeeeccCCc
Q 024268 53 VFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDAS-LFMMGAPGS 131 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~-~f~~~vpgS 131 (270)
.-+|+|+||++|..+.. +.++ .|..+|+.-|+..+ .-.......... ..+ -++.+-...
T Consensus 419 g~rVLDIGCGTG~ls~~--------LA~~-------~P~~kVtGIDIS~~----MLe~Ararl~~~-g~~ie~I~gDa~d 478 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDM--------IEEE-------TEDKRIYGIDISEN----VIDTLKKKKQNE-GRSWNVIKGDAIN 478 (677)
T ss_pred CCEEEEeCCCCCHHHHH--------HHHh-------CCCCEEEEEECCHH----HHHHHHHHhhhc-CCCeEEEEcchHh
Confidence 56999999999965432 2222 14466777776542 011110000000 011 122221111
Q ss_pred cccCCcCCCceeEEEcccccccc-cCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhccccccccC
Q 024268 132 FYGRLFPTNSLQLVHSSYGVHWL-SKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPN 210 (270)
Q Consensus 132 FY~rLfP~~Svh~~~Ss~alHWL-S~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~Ra~EL~~G 210 (270)
....||++++|++++++++||+ +.+| .. |.- -. .+|...+|+.=.+=|+||
T Consensus 479 -Lp~~fedeSFDvVVsn~vLH~L~syIp-----~~------g~~-----f~-----------~edl~kiLreI~RVLKPG 530 (677)
T PRK06922 479 -LSSSFEKESVDTIVYSSILHELFSYIE-----YE------GKK-----FN-----------HEVIKKGLQSAYEVLKPG 530 (677)
T ss_pred -CccccCCCCEEEEEEchHHHhhhhhcc-----cc------ccc-----cc-----------HHHHHHHHHHHHHHcCCC
Confidence 1234788999999999999965 4555 11 110 00 136666666666778999
Q ss_pred ceEEEE
Q 024268 211 GRLVLV 216 (270)
Q Consensus 211 G~lvl~ 216 (270)
|++++.
T Consensus 531 GrLII~ 536 (677)
T PRK06922 531 GRIIIR 536 (677)
T ss_pred cEEEEE
Confidence 999886
No 18
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=96.50 E-value=0.012 Score=53.75 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=45.3
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCC
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPG 130 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpg 130 (270)
+...+|.|+||++|..+..+. +. ...+|+..|+..+-- ...+..-. . ..+ +..+.+
T Consensus 51 ~~~~~VLDiGcG~G~~a~~la--------~~--------~~~~v~giD~s~~~~-~~a~~~~~--~---~~~--i~~~~~ 106 (263)
T PTZ00098 51 NENSKVLDIGSGLGGGCKYIN--------EK--------YGAHVHGVDICEKMV-NIAKLRNS--D---KNK--IEFEAN 106 (263)
T ss_pred CCCCEEEEEcCCCChhhHHHH--------hh--------cCCEEEEEECCHHHH-HHHHHHcC--c---CCc--eEEEEC
Confidence 345799999999998765432 11 114667777532211 11111100 0 111 222345
Q ss_pred ccccCCcCCCceeEEEcccccccc
Q 024268 131 SFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 131 SFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
++...-+|+++.|++++..++|++
T Consensus 107 D~~~~~~~~~~FD~V~s~~~l~h~ 130 (263)
T PTZ00098 107 DILKKDFPENTFDMIYSRDAILHL 130 (263)
T ss_pred CcccCCCCCCCeEEEEEhhhHHhC
Confidence 555556889999999998887653
No 19
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=96.45 E-value=0.026 Score=50.89 Aligned_cols=19 Identities=11% Similarity=0.302 Sum_probs=16.3
Q ss_pred cCCCceeEEEccccccccc
Q 024268 137 FPTNSLQLVHSSYGVHWLS 155 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWLS 155 (270)
+++++.|++++..+|||+.
T Consensus 108 ~~~~~fD~V~~~~vl~~~~ 126 (255)
T PRK11036 108 HLETPVDLILFHAVLEWVA 126 (255)
T ss_pred hcCCCCCEEEehhHHHhhC
Confidence 4678999999999999974
No 20
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=96.41 E-value=0.034 Score=48.43 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=16.2
Q ss_pred eeEEeeecCCCCccchHHH
Q 024268 53 VFNVADLGCASNASTFSVM 71 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v 71 (270)
+.+|+|+||.+|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~la 49 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLS 49 (195)
T ss_pred CCcEEEeCCCCCHHHHHHH
Confidence 4699999999999987554
No 21
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=96.27 E-value=0.019 Score=52.70 Aligned_cols=45 Identities=18% Similarity=0.384 Sum_probs=26.3
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCC
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPG 101 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~ 101 (270)
.++++|.|.|||+|--+..+.-.+.+.... ...+.++|+-.|+-.
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~------~~~~~~~I~g~Dis~ 142 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPK------AREPDVKILATDIDL 142 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhh------cCCCCeEEEEEECCH
Confidence 456999999999997533222222222211 112458888888643
No 22
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.25 E-value=0.0079 Score=45.90 Aligned_cols=79 Identities=19% Similarity=0.232 Sum_probs=32.9
Q ss_pred eeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCccccCC
Q 024268 57 ADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRL 136 (270)
Q Consensus 57 ADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSFY~rL 136 (270)
.|+||.+|..+..++... |..+++..|.-..=-...=+.+.... ....-.+...........
T Consensus 1 LdiGcG~G~~~~~l~~~~---------------~~~~~~~~D~s~~~l~~a~~~~~~~~---~~~~~~~~~~~~~~~~~~ 62 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL---------------PDARYTGVDISPSMLERARERLAELG---NDNFERLRFDVLDLFDYD 62 (99)
T ss_dssp -EESTTTS-TTTTHHHHC----------------EEEEEEEESSSSTTSTTCCCHHHCT------EEEEE--SSS---CC
T ss_pred CEeCccChHHHHHHHHhC---------------CCCEEEEEECCHHHHHHHHHHhhhcC---CcceeEEEeecCChhhcc
Confidence 499999999987555422 44777777754332211111111100 001122233333322222
Q ss_pred cCCCceeEEEcccccccc
Q 024268 137 FPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWL 154 (270)
.+ ++.|+++++.+|||+
T Consensus 63 ~~-~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 63 PP-ESFDLVVASNVLHHL 79 (99)
T ss_dssp C-----SEEEEE-TTS--
T ss_pred cc-cccceehhhhhHhhh
Confidence 22 899999999999998
No 23
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=96.22 E-value=0.03 Score=48.82 Aligned_cols=19 Identities=21% Similarity=0.426 Sum_probs=16.0
Q ss_pred eeEEeeecCCCCccchHHH
Q 024268 53 VFNVADLGCASNASTFSVM 71 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v 71 (270)
.-+|+|+||+.|.+++.+.
T Consensus 31 ~~~vLDiGcG~G~~a~~La 49 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLA 49 (197)
T ss_pred CCcEEEECCCCCHHHHHHH
Confidence 4689999999999987654
No 24
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=96.16 E-value=0.012 Score=51.72 Aligned_cols=82 Identities=15% Similarity=0.157 Sum_probs=45.3
Q ss_pred ceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhc-chhhhhccCCCceeeeccCC
Q 024268 52 KVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKG-LSSFADRYNDASLFMMGAPG 130 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~-L~~~~~~~~~~~~f~~~vpg 130 (270)
..-+|+|+||.+|..+..+. +.+ .|..+|+.-|+-.+ .-...+. +.. ...++ +.-+.+
T Consensus 45 ~~~~vLDiGcG~G~~~~~la--------~~~------~~~~~v~gvD~s~~-~~~~a~~~~~~----~~~~~--v~~~~~ 103 (231)
T TIGR02752 45 AGTSALDVCCGTADWSIALA--------EAV------GPEGHVIGLDFSEN-MLSVGRQKVKD----AGLHN--VELVHG 103 (231)
T ss_pred CCCEEEEeCCCcCHHHHHHH--------HHh------CCCCEEEEEECCHH-HHHHHHHHHHh----cCCCc--eEEEEe
Confidence 34789999999998655322 221 13356777776331 1111111 111 00012 122333
Q ss_pred ccccCCcCCCceeEEEcccccccc
Q 024268 131 SFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 131 SFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
....--+|+++.|++++.+++||+
T Consensus 104 d~~~~~~~~~~fD~V~~~~~l~~~ 127 (231)
T TIGR02752 104 NAMELPFDDNSFDYVTIGFGLRNV 127 (231)
T ss_pred chhcCCCCCCCccEEEEecccccC
Confidence 333334688999999999999985
No 25
>PRK08317 hypothetical protein; Provisional
Probab=96.12 E-value=0.022 Score=49.25 Aligned_cols=84 Identities=19% Similarity=0.184 Sum_probs=44.2
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCC
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPG 130 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpg 130 (270)
....+|.|+||..|..+..+.. ++ .|.-+++.-|+-.+-....-+... .....--|.. +
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~--------~~------~~~~~v~~~d~~~~~~~~a~~~~~----~~~~~~~~~~---~ 76 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELAR--------RV------GPEGRVVGIDRSEAMLALAKERAA----GLGPNVEFVR---G 76 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHH--------hc------CCCcEEEEEeCCHHHHHHHHHHhh----CCCCceEEEe---c
Confidence 3457999999999976553332 11 133466666653322111111100 0000111222 2
Q ss_pred ccccCCcCCCceeEEEccccccccc
Q 024268 131 SFYGRLFPTNSLQLVHSSYGVHWLS 155 (270)
Q Consensus 131 SFY~rLfP~~Svh~~~Ss~alHWLS 155 (270)
.+...-+++++.|++++..++||+.
T Consensus 77 d~~~~~~~~~~~D~v~~~~~~~~~~ 101 (241)
T PRK08317 77 DADGLPFPDGSFDAVRSDRVLQHLE 101 (241)
T ss_pred ccccCCCCCCCceEEEEechhhccC
Confidence 3333336788999999999998863
No 26
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=96.05 E-value=0.026 Score=52.60 Aligned_cols=37 Identities=16% Similarity=0.278 Sum_probs=24.7
Q ss_pred HHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHH
Q 024268 34 PVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSS 73 (270)
Q Consensus 34 p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ 73 (270)
.+|++...++.... +...+|+|+||++|.-|..+++.
T Consensus 48 ~il~~~~~~ia~~~---~~~~~iLELGcGtG~~t~~Ll~~ 84 (301)
T TIGR03438 48 AILERHADEIAAAT---GAGCELVELGSGSSRKTRLLLDA 84 (301)
T ss_pred HHHHHHHHHHHHhh---CCCCeEEecCCCcchhHHHHHHh
Confidence 44555555554333 34468999999999888766654
No 27
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=95.85 E-value=0.028 Score=49.77 Aligned_cols=67 Identities=24% Similarity=0.360 Sum_probs=39.8
Q ss_pred ceeEEeeecCCCCccchHHHH------------HHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccC
Q 024268 52 KVFNVADLGCASNASTFSVMS------------SVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYN 119 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~------------~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~ 119 (270)
++-++.|+||..|+||+.+.+ ..|+.+.+...+. .-+|+...-|+-. |
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~---~l~i~~~~~Dl~~--~--------------- 89 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEE---GLDIRTRVADLND--F--------------- 89 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHT---T-TEEEEE-BGCC--B---------------
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhc---CceeEEEEecchh--c---------------
Confidence 356999999999999997654 2444444433221 1226666666422 1
Q ss_pred CCceeeeccCCccccCCcCCCceeEEEccccccccc
Q 024268 120 DASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWLS 155 (270)
Q Consensus 120 ~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWLS 155 (270)
-+| ...|+++|...+|.|.
T Consensus 90 ----------------~~~-~~yD~I~st~v~~fL~ 108 (192)
T PF03848_consen 90 ----------------DFP-EEYDFIVSTVVFMFLQ 108 (192)
T ss_dssp ----------------S-T-TTEEEEEEESSGGGS-
T ss_pred ----------------ccc-CCcCEEEEEEEeccCC
Confidence 122 4579999999999974
No 28
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=95.60 E-value=0.037 Score=48.42 Aligned_cols=15 Identities=20% Similarity=0.326 Sum_probs=12.6
Q ss_pred CceeEEEcccccccc
Q 024268 140 NSLQLVHSSYGVHWL 154 (270)
Q Consensus 140 ~Svh~~~Ss~alHWL 154 (270)
++.|+++|..++||+
T Consensus 66 ~~fD~I~~~~~l~~~ 80 (224)
T smart00828 66 DTYDLVFGFEVIHHI 80 (224)
T ss_pred CCCCEeehHHHHHhC
Confidence 478999999999884
No 29
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.57 E-value=0.035 Score=54.48 Aligned_cols=18 Identities=22% Similarity=0.466 Sum_probs=16.7
Q ss_pred cCCCceeEEEcccccccc
Q 024268 137 FPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWL 154 (270)
+|+++.|++++.+++||+
T Consensus 99 ~~~~~fD~I~~~~~l~~l 116 (475)
T PLN02336 99 ISDGSVDLIFSNWLLMYL 116 (475)
T ss_pred CCCCCEEEEehhhhHHhC
Confidence 688999999999999997
No 30
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=95.49 E-value=0.039 Score=52.12 Aligned_cols=80 Identities=15% Similarity=0.135 Sum_probs=43.7
Q ss_pred eeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCcc
Q 024268 53 VFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSF 132 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSF 132 (270)
.-+|+|+||.+|..++.+. +. .+. +|+--| |+-.+..-++....+... +.++-+ +++.+
T Consensus 123 g~~VLDIGCG~G~~~~~la--------~~-------g~~-~V~GiD-~S~~~l~q~~a~~~~~~~--~~~i~~--~~~d~ 181 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRML--------GA-------GAK-LVVGID-PSQLFLCQFEAVRKLLGN--DQRAHL--LPLGI 181 (322)
T ss_pred CCEEEEeccCCcHHHHHHH--------Hc-------CCC-EEEEEc-CCHHHHHHHHHHHHhcCC--CCCeEE--EeCCH
Confidence 3589999999998765322 11 121 477777 555454433333221100 123222 33333
Q ss_pred ccCCcCCCceeEEEcccccccc
Q 024268 133 YGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 133 Y~rLfP~~Svh~~~Ss~alHWL 154 (270)
-.--+ +++.|+++|..+|||.
T Consensus 182 e~lp~-~~~FD~V~s~~vl~H~ 202 (322)
T PRK15068 182 EQLPA-LKAFDTVFSMGVLYHR 202 (322)
T ss_pred HHCCC-cCCcCEEEECChhhcc
Confidence 22112 6789999999899873
No 31
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=95.44 E-value=0.041 Score=54.06 Aligned_cols=80 Identities=16% Similarity=0.185 Sum_probs=46.2
Q ss_pred ceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCc
Q 024268 52 KVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGS 131 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgS 131 (270)
...+|+|+||++|..++.+ .+. ...+|+--|+.. +.-...+. . .... ..+ +..+-+.
T Consensus 266 ~~~~vLDiGcG~G~~~~~l--------a~~--------~~~~v~gvDiS~-~~l~~A~~--~-~~~~-~~~--v~~~~~d 322 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYM--------AEN--------FDVHVVGIDLSV-NMISFALE--R-AIGR-KCS--VEFEVAD 322 (475)
T ss_pred CCCEEEEEeccCCHHHHHH--------HHh--------cCCEEEEEECCH-HHHHHHHH--H-hhcC-CCc--eEEEEcC
Confidence 3568999999999765432 222 124677777642 11111111 0 0011 111 2223355
Q ss_pred cccCCcCCCceeEEEcccccccc
Q 024268 132 FYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 132 FY~rLfP~~Svh~~~Ss~alHWL 154 (270)
+....+|+++.|+++|..++||+
T Consensus 323 ~~~~~~~~~~fD~I~s~~~l~h~ 345 (475)
T PLN02336 323 CTKKTYPDNSFDVIYSRDTILHI 345 (475)
T ss_pred cccCCCCCCCEEEEEECCccccc
Confidence 66667899999999999999995
No 32
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=95.38 E-value=0.056 Score=47.06 Aligned_cols=84 Identities=15% Similarity=0.133 Sum_probs=46.6
Q ss_pred eeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCcc
Q 024268 53 VFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSF 132 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSF 132 (270)
..+|+|+||+.|..+..+.. +. ++..+++..|+..+=....=+.+.. ... ..++ ..+-+++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~--------~~------~~~~~v~~~D~s~~~~~~a~~~~~~--~~~-~~~~--~~~~~d~ 112 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAK--------AV------GKTGEVVGLDFSEGMLAVGREKLRD--LGL-SGNV--EFVQGDA 112 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHH--------Hc------CCCCeEEEEeCCHHHHHHHHHhhcc--ccc-ccCe--EEEeccc
Confidence 47999999999987654332 11 1246777778744211111111110 000 1121 1222455
Q ss_pred ccCCcCCCceeEEEccccccccc
Q 024268 133 YGRLFPTNSLQLVHSSYGVHWLS 155 (270)
Q Consensus 133 Y~rLfP~~Svh~~~Ss~alHWLS 155 (270)
....++.++.|++++++++|+++
T Consensus 113 ~~~~~~~~~~D~I~~~~~l~~~~ 135 (239)
T PRK00216 113 EALPFPDNSFDAVTIAFGLRNVP 135 (239)
T ss_pred ccCCCCCCCccEEEEecccccCC
Confidence 55557788999999999998853
No 33
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=95.28 E-value=0.066 Score=48.41 Aligned_cols=82 Identities=17% Similarity=0.200 Sum_probs=35.9
Q ss_pred ceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCC-CceeeeccCC
Q 024268 52 KVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYND-ASLFMMGAPG 130 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~-~~~f~~~vpg 130 (270)
+..+|.|+||.+|-.|..+ .++ -.|..+|+.-|. +.=--.... ++..+ +.--+.-+-|
T Consensus 47 ~g~~vLDv~~GtG~~~~~l--------~~~------~~~~~~v~~vD~-----s~~ML~~a~--~k~~~~~~~~i~~v~~ 105 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTREL--------ARR------VGPNGKVVGVDI-----SPGMLEVAR--KKLKREGLQNIEFVQG 105 (233)
T ss_dssp S--EEEEET-TTSHHHHHH--------GGG------SS---EEEEEES------HHHHHHHH--HHHHHTT--SEEEEE-
T ss_pred CCCEEEEeCCChHHHHHHH--------HHH------CCCccEEEEecC-----CHHHHHHHH--HHHHhhCCCCeeEEEc
Confidence 4579999999999665533 222 123346665553 221111111 11111 0001222334
Q ss_pred ccccCCcCCCceeEEEcccccccc
Q 024268 131 SFYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 131 SFY~rLfP~~Svh~~~Ss~alHWL 154 (270)
+...==||++|.|.+.+++++|-+
T Consensus 106 da~~lp~~d~sfD~v~~~fglrn~ 129 (233)
T PF01209_consen 106 DAEDLPFPDNSFDAVTCSFGLRNF 129 (233)
T ss_dssp BTTB--S-TT-EEEEEEES-GGG-
T ss_pred CHHHhcCCCCceeEEEHHhhHHhh
Confidence 444334899999999999999975
No 34
>PRK06202 hypothetical protein; Provisional
Probab=95.28 E-value=0.099 Score=46.35 Aligned_cols=85 Identities=11% Similarity=0.182 Sum_probs=47.3
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCc-eeeeccC
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDAS-LFMMGAP 129 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~-~f~~~vp 129 (270)
.+..+|+|+||.+|..+..+. +..++. .+..+|+..|+-. +.-...+. .....+ -+..+..
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~----~~~~~~-------g~~~~v~gvD~s~-~~l~~a~~------~~~~~~~~~~~~~~ 120 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLA----RWARRD-------GLRLEVTAIDPDP-RAVAFARA------NPRRPGVTFRQAVS 120 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHH----HHHHhC-------CCCcEEEEEcCCH-HHHHHHHh------ccccCCCeEEEEec
Confidence 356799999999998766332 222221 2446788888633 11111111 111111 1222222
Q ss_pred CccccCCcCCCceeEEEcccccccccC
Q 024268 130 GSFYGRLFPTNSLQLVHSSYGVHWLSK 156 (270)
Q Consensus 130 gSFY~rLfP~~Svh~~~Ss~alHWLS~ 156 (270)
..+ -+++++.|+++++.+|||+..
T Consensus 121 ~~l---~~~~~~fD~V~~~~~lhh~~d 144 (232)
T PRK06202 121 DEL---VAEGERFDVVTSNHFLHHLDD 144 (232)
T ss_pred ccc---cccCCCccEEEECCeeecCCh
Confidence 221 126789999999999999753
No 35
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.26 E-value=0.018 Score=52.96 Aligned_cols=67 Identities=25% Similarity=0.415 Sum_probs=46.1
Q ss_pred cCCCceeEEEcccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhccccccccCceEEEE
Q 024268 137 FPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVLV 216 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~Ra~EL~~GG~lvl~ 216 (270)
|-++|+|+++||.++||....| .. + .| | ..-|||.|.++-.
T Consensus 133 f~ens~DLiisSlslHW~NdLP-----g~--------m---------------~~----------c-k~~lKPDg~Fias 173 (325)
T KOG2940|consen 133 FKENSVDLIISSLSLHWTNDLP-----GS--------M---------------IQ----------C-KLALKPDGLFIAS 173 (325)
T ss_pred ccccchhhhhhhhhhhhhccCc-----hH--------H---------------HH----------H-HHhcCCCccchhH
Confidence 7789999999999999998888 11 1 00 0 0136788988887
Q ss_pred eecCCCCCCCCCCCCcchHHH-HHHHHHHHHHccCCCc
Q 024268 217 FNGRPSADFTRDYCYPIPWES-LSEAIAAMVSEVRSNF 253 (270)
Q Consensus 217 ~~gr~~~~~~~~~~~~~~~~~-l~~~l~dmv~eGli~~ 253 (270)
++|-+. ++++ .+--|.+|..||=||.
T Consensus 174 mlggdT-----------LyELR~slqLAelER~GGiSp 200 (325)
T KOG2940|consen 174 MLGGDT-----------LYELRCSLQLAELEREGGISP 200 (325)
T ss_pred Hhcccc-----------HHHHHHHhhHHHHHhccCCCC
Confidence 777643 3332 3455778888877765
No 36
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=95.19 E-value=0.093 Score=46.45 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=41.5
Q ss_pred eeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCcc
Q 024268 53 VFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSF 132 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSF 132 (270)
.-+|+|+||++|.-+..+. ++. .+.-+|+.-|+-. . ..++ ++ ..+-|++
T Consensus 52 ~~~VLDlG~GtG~~t~~l~--------~~~------~~~~~V~aVDi~~--~----~~~~---------~v--~~i~~D~ 100 (209)
T PRK11188 52 GMTVVDLGAAPGGWSQYAV--------TQI------GDKGRVIACDILP--M----DPIV---------GV--DFLQGDF 100 (209)
T ss_pred CCEEEEEcccCCHHHHHHH--------HHc------CCCceEEEEeccc--c----cCCC---------Cc--EEEecCC
Confidence 4589999999997654333 221 1224566666522 1 1111 11 1223344
Q ss_pred ccC--------CcCCCceeEEEcccccccc
Q 024268 133 YGR--------LFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 133 Y~r--------LfP~~Svh~~~Ss~alHWL 154 (270)
... -++++++|+++|..+.||.
T Consensus 101 ~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~ 130 (209)
T PRK11188 101 RDELVLKALLERVGDSKVQVVMSDMAPNMS 130 (209)
T ss_pred CChHHHHHHHHHhCCCCCCEEecCCCCccC
Confidence 442 2577899999999999993
No 37
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=95.14 E-value=0.069 Score=48.63 Aligned_cols=24 Identities=21% Similarity=0.472 Sum_probs=20.0
Q ss_pred CCcCCCceeEEEcccccccccCCC
Q 024268 135 RLFPTNSLQLVHSSYGVHWLSKVP 158 (270)
Q Consensus 135 rLfP~~Svh~~~Ss~alHWLS~~P 158 (270)
..=|+...|++||.-+||||...|
T Consensus 86 ~w~p~~~~dllfaNAvlqWlpdH~ 109 (257)
T COG4106 86 TWKPEQPTDLLFANAVLQWLPDHP 109 (257)
T ss_pred hcCCCCccchhhhhhhhhhccccH
Confidence 456888999999999999985555
No 38
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=95.11 E-value=0.083 Score=45.48 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=44.3
Q ss_pred ceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCc
Q 024268 52 KVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGS 131 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgS 131 (270)
...+|.|+||+.|..+..+.. +. ++..+++.-|.-.. .......... ...++- .+.++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~--------~~------~~~~~~~~iD~~~~----~~~~~~~~~~--~~~~i~--~~~~d 96 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAK--------SA------PDRGKVTGVDFSSE----MLEVAKKKSE--LPLNIE--FIQAD 96 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHH--------hc------CCCceEEEEECCHH----HHHHHHHHhc--cCCCce--EEecc
Confidence 457999999999987654432 11 11256677775321 1111111000 011221 12244
Q ss_pred cccCCcCCCceeEEEcccccccc
Q 024268 132 FYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 132 FY~rLfP~~Svh~~~Ss~alHWL 154 (270)
+....+++++.|++++++.+|+.
T Consensus 97 ~~~~~~~~~~~D~i~~~~~~~~~ 119 (223)
T TIGR01934 97 AEALPFEDNSFDAVTIAFGLRNV 119 (223)
T ss_pred hhcCCCCCCcEEEEEEeeeeCCc
Confidence 44545778899999999998873
No 39
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=94.95 E-value=0.13 Score=45.42 Aligned_cols=106 Identities=14% Similarity=0.246 Sum_probs=54.2
Q ss_pred CCchHHhhCHHHHHHHHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceE
Q 024268 14 GENSYAQNSPFTQRVIELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQ 93 (270)
Q Consensus 14 G~~sY~~NS~~Q~~~i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiq 93 (270)
|.. |.+....+.. +.....++.+++.. .++.-+|.|+||++|.++..+. +. .|..+
T Consensus 14 g~~-~~~rn~~~~~-~~~~~~~~~~~l~~-------~~~~~~VLDiGCG~G~~~~~L~--------~~-------~~~~~ 69 (204)
T TIGR03587 14 GKE-YIDRNSRQSL-VAAKLAMFARALNR-------LPKIASILELGANIGMNLAALK--------RL-------LPFKH 69 (204)
T ss_pred cch-hhhccccHHH-HHHHHHHHHHHHHh-------cCCCCcEEEEecCCCHHHHHHH--------Hh-------CCCCe
Confidence 545 4444443322 23344455555442 2344679999999997655332 21 02244
Q ss_pred EEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCccccCCcCCCceeEEEccccccccc
Q 024268 94 LYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWLS 155 (270)
Q Consensus 94 v~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWLS 155 (270)
++.-|+-.+=-. ..+. ......+. .++... -+|+++.|++++..+||+++
T Consensus 70 v~giDiS~~~l~-~A~~------~~~~~~~~----~~d~~~-~~~~~sfD~V~~~~vL~hl~ 119 (204)
T TIGR03587 70 IYGVEINEYAVE-KAKA------YLPNINII----QGSLFD-PFKDNFFDLVLTKGVLIHIN 119 (204)
T ss_pred EEEEECCHHHHH-HHHh------hCCCCcEE----EeeccC-CCCCCCEEEEEECChhhhCC
Confidence 555553221111 1110 01111122 234444 57899999999999998763
No 40
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=94.80 E-value=0.21 Score=46.23 Aligned_cols=78 Identities=19% Similarity=0.250 Sum_probs=46.5
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccC-CCceeeeccC
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYN-DASLFMMGAP 129 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~-~~~~f~~~vp 129 (270)
.+.-+|+|+||++|..++.+ .++ .|+.+++.-|+|. ............. .++ +..++
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~--------~~~-------~p~~~~~~~D~~~-----~~~~a~~~~~~~gl~~r--v~~~~ 205 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAM--------LKH-------FPELDSTILNLPG-----AIDLVNENAAEKGVADR--MRGIA 205 (306)
T ss_pred CCCCEEEEeCCchhHHHHHH--------HHH-------CCCCEEEEEecHH-----HHHHHHHHHHhCCccce--EEEEe
Confidence 44579999999999554422 222 2557777778862 2222222111111 122 45678
Q ss_pred CccccCCcCCCceeEEEcccccc
Q 024268 130 GSFYGRLFPTNSLQLVHSSYGVH 152 (270)
Q Consensus 130 gSFY~rLfP~~Svh~~~Ss~alH 152 (270)
|+|+..-+|.. |+++.+..+|
T Consensus 206 ~d~~~~~~~~~--D~v~~~~~lh 226 (306)
T TIGR02716 206 VDIYKESYPEA--DAVLFCRILY 226 (306)
T ss_pred cCccCCCCCCC--CEEEeEhhhh
Confidence 89987666763 8888878777
No 41
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=94.79 E-value=0.062 Score=51.02 Aligned_cols=19 Identities=11% Similarity=-0.046 Sum_probs=16.1
Q ss_pred cCCCceeEEEccccccccc
Q 024268 137 FPTNSLQLVHSSYGVHWLS 155 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWLS 155 (270)
+++++.|++++...|||+.
T Consensus 194 ~~~~~FD~Vi~~~vLeHv~ 212 (322)
T PLN02396 194 DEGRKFDAVLSLEVIEHVA 212 (322)
T ss_pred hccCCCCEEEEhhHHHhcC
Confidence 5678999999999999853
No 42
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=94.66 E-value=0.08 Score=50.75 Aligned_cols=79 Identities=14% Similarity=0.103 Sum_probs=44.7
Q ss_pred ceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCc
Q 024268 52 KVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGS 131 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgS 131 (270)
...+|+|+||++|..++.+.+ +. +..+++.-|+..+ .-...+.... ..++ ..+.++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~--------~~-------~~~~VtgVD~S~~-mL~~A~~k~~------~~~i--~~i~gD 168 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVK--------HV-------DAKNVTILDQSPH-QLAKAKQKEP------LKEC--KIIEGD 168 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHH--------HC-------CCCEEEEEECCHH-HHHHHHHhhh------ccCC--eEEecc
Confidence 357999999999987654332 11 1245666675322 1111111100 0111 114444
Q ss_pred cccCCcCCCceeEEEcccccccc
Q 024268 132 FYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 132 FY~rLfP~~Svh~~~Ss~alHWL 154 (270)
...--+|+++.|+++++.++|++
T Consensus 169 ~e~lp~~~~sFDvVIs~~~L~~~ 191 (340)
T PLN02490 169 AEDLPFPTDYADRYVSAGSIEYW 191 (340)
T ss_pred HHhCCCCCCceeEEEEcChhhhC
Confidence 44444688999999999999873
No 43
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=94.38 E-value=0.15 Score=42.00 Aligned_cols=20 Identities=20% Similarity=0.414 Sum_probs=15.4
Q ss_pred ceeEEeeecCCCCccchHHH
Q 024268 52 KVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v 71 (270)
+..+|+|+||.+|..++.+.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~ 22 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLA 22 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHH
T ss_pred CCCEEEEecCcCcHHHHHHH
Confidence 45899999999998876554
No 44
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=94.28 E-value=0.29 Score=42.70 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=16.0
Q ss_pred ceeEEeeecCCCCccchHHH
Q 024268 52 KVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v 71 (270)
...+|.|+||++|..+..+.
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~ 82 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLA 82 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHH
Confidence 45799999999998776553
No 45
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=94.23 E-value=0.28 Score=44.88 Aligned_cols=54 Identities=22% Similarity=0.306 Sum_probs=38.4
Q ss_pred cCCCceeEEEcccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhccccccccCceEEEE
Q 024268 137 FPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVLV 216 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~Ra~EL~~GG~lvl~ 216 (270)
|++++.|=++|..|++||=..- .+. + .| ++.+..|+..=..=|++|++-|+.
T Consensus 108 frpGtFDg~ISISAvQWLcnA~-----~s~------~-------~P----------~~Rl~~FF~tLy~~l~rg~raV~Q 159 (270)
T KOG1541|consen 108 FRPGTFDGVISISAVQWLCNAD-----KSL------H-------VP----------KKRLLRFFGTLYSCLKRGARAVLQ 159 (270)
T ss_pred CCCCccceEEEeeeeeeecccC-----ccc------c-------Ch----------HHHHHHHhhhhhhhhccCceeEEE
Confidence 7899999999999999975543 110 1 11 146667777666778888888887
Q ss_pred ee
Q 024268 217 FN 218 (270)
Q Consensus 217 ~~ 218 (270)
|-
T Consensus 160 fY 161 (270)
T KOG1541|consen 160 FY 161 (270)
T ss_pred ec
Confidence 73
No 46
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=94.21 E-value=0.47 Score=42.00 Aligned_cols=39 Identities=13% Similarity=0.124 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHH
Q 024268 33 KPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 33 ~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v 71 (270)
.|+-++.|+.+....-...+--++.|+||.+|.-|+..+
T Consensus 15 ~p~TK~EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a 53 (187)
T COG2242 15 GPMTKEEIRALTLSKLRPRPGDRLWDIGAGTGSITIEWA 53 (187)
T ss_pred CCCcHHHHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHH
Confidence 345556666554322111234599999999999888665
No 47
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=94.18 E-value=0.39 Score=42.71 Aligned_cols=105 Identities=20% Similarity=0.359 Sum_probs=66.0
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCC
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPG 130 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpg 130 (270)
++.-+|+|+|+++|..++ ++.++ .|.+++..=|||.. ...... .++ +.-+||
T Consensus 99 ~~~~~vvDvGGG~G~~~~--------~l~~~-------~P~l~~~v~Dlp~v-----~~~~~~------~~r--v~~~~g 150 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAI--------ALARA-------YPNLRATVFDLPEV-----IEQAKE------ADR--VEFVPG 150 (241)
T ss_dssp TTSSEEEEET-TTSHHHH--------HHHHH-------STTSEEEEEE-HHH-----HCCHHH------TTT--EEEEES
T ss_pred cCccEEEeccCcchHHHH--------HHHHH-------CCCCcceeeccHhh-----hhcccc------ccc--cccccc
Confidence 445689999999996654 23333 27789999999863 222221 123 344899
Q ss_pred ccccCCcCCCceeEEEcccccc-cccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhcccccccc
Q 024268 131 SFYGRLFPTNSLQLVHSSYGVH-WLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVP 209 (270)
Q Consensus 131 SFY~rLfP~~Svh~~~Ss~alH-WLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~Ra~EL~~ 209 (270)
.|+ .=+|. -|+++-.+.|| | | ++ +-..+|+.=++-|+|
T Consensus 151 d~f-~~~P~--~D~~~l~~vLh~~----~----------------------d~------------~~~~iL~~~~~al~p 189 (241)
T PF00891_consen 151 DFF-DPLPV--ADVYLLRHVLHDW----S----------------------DE------------DCVKILRNAAAALKP 189 (241)
T ss_dssp -TT-TCCSS--ESEEEEESSGGGS---------------------------HH------------HHHHHHHHHHHHSEE
T ss_pred cHH-hhhcc--ccceeeehhhhhc----c----------------------hH------------HHHHHHHHHHHHhCC
Confidence 999 77888 89888888887 6 3 12 222334344445899
Q ss_pred C--ceEEEEeecCCCCC
Q 024268 210 N--GRLVLVFNGRPSAD 224 (270)
Q Consensus 210 G--G~lvl~~~gr~~~~ 224 (270)
| |++++.=.-.++..
T Consensus 190 g~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 190 GKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp CTTEEEEEEEEEECSSS
T ss_pred CCCCeEEEEeeccCCCC
Confidence 9 99988776665543
No 48
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=93.86 E-value=0.18 Score=47.84 Aligned_cols=17 Identities=12% Similarity=-0.136 Sum_probs=14.3
Q ss_pred CCCceeEEEcccccccc
Q 024268 138 PTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 138 P~~Svh~~~Ss~alHWL 154 (270)
+..+.|.++|..+|||+
T Consensus 185 ~~~~FD~V~s~gvL~H~ 201 (314)
T TIGR00452 185 ELYAFDTVFSMGVLYHR 201 (314)
T ss_pred CCCCcCEEEEcchhhcc
Confidence 34689999999999984
No 49
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=93.69 E-value=0.18 Score=45.08 Aligned_cols=93 Identities=18% Similarity=0.364 Sum_probs=58.0
Q ss_pred CceeEEeeecCCCCccchHH------------HHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhcc
Q 024268 51 NKVFNVADLGCASNASTFSV------------MSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRY 118 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~------------v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~ 118 (270)
+.--++.|+|||.|..|..+ ....|+.-++++. ..|.|++..-|+|.
T Consensus 42 ~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~----------------- 100 (201)
T PF05401_consen 42 RRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA----GLPHVEWIQADVPE----------------- 100 (201)
T ss_dssp SSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT-----------------
T ss_pred cccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCC-----------------
Confidence 45678999999999988754 3566777777653 24667777777642
Q ss_pred CCCceeeeccCCccccCCcCCCceeEEEcccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHH
Q 024268 119 NDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSL 198 (270)
Q Consensus 119 ~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~ 198 (270)
..|.+..|+++-|=-+++|+.. .|+..
T Consensus 101 -----------------~~P~~~FDLIV~SEVlYYL~~~------------------------------------~~L~~ 127 (201)
T PF05401_consen 101 -----------------FWPEGRFDLIVLSEVLYYLDDA------------------------------------EDLRA 127 (201)
T ss_dssp --------------------SS-EEEEEEES-GGGSSSH------------------------------------HHHHH
T ss_pred -----------------CCCCCCeeEEEEehHhHcCCCH------------------------------------HHHHH
Confidence 2477888999999888887432 13334
Q ss_pred HHhccccccccCceEEEEe
Q 024268 199 FLKSRSQEMVPNGRLVLVF 217 (270)
Q Consensus 199 FL~~Ra~EL~~GG~lvl~~ 217 (270)
++..=.+=|.|||.||+.-
T Consensus 128 ~l~~l~~~L~pgG~LV~g~ 146 (201)
T PF05401_consen 128 ALDRLVAALAPGGHLVFGH 146 (201)
T ss_dssp HHHHHHHTEEEEEEEEEEE
T ss_pred HHHHHHHHhCCCCEEEEEE
Confidence 4444445689999998854
No 50
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=93.47 E-value=0.33 Score=42.82 Aligned_cols=24 Identities=17% Similarity=0.362 Sum_probs=17.3
Q ss_pred HHHHHHHhccccccccCceEEEEe
Q 024268 194 EDFSLFLKSRSQEMVPNGRLVLVF 217 (270)
Q Consensus 194 ~Dl~~FL~~Ra~EL~~GG~lvl~~ 217 (270)
.++..|++.=.+-|+|||.+++..
T Consensus 194 ~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 194 DFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred HHHHHHHHHHHHhcccCCEEEEEE
Confidence 355566666667789999998753
No 51
>PTZ00146 fibrillarin; Provisional
Probab=93.40 E-value=1.8 Score=40.87 Aligned_cols=44 Identities=7% Similarity=0.146 Sum_probs=26.7
Q ss_pred cccCceEEEEeecCCCCCCCCCCCCcchHHHHHHHHHHHHHccCCCchhh
Q 024268 207 MVPNGRLVLVFNGRPSADFTRDYCYPIPWESLSEAIAAMVSEVRSNFQSF 256 (270)
Q Consensus 207 L~~GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~dmv~eGli~~ee~ 256 (270)
|+|||.+++.+-.++.+.... .-+.+++-++.|.++|+-..|.+
T Consensus 227 LKpGG~~vI~ika~~id~g~~------pe~~f~~ev~~L~~~GF~~~e~v 270 (293)
T PTZ00146 227 LKNGGHFIISIKANCIDSTAK------PEVVFASEVQKLKKEGLKPKEQL 270 (293)
T ss_pred ccCCCEEEEEEeccccccCCC------HHHHHHHHHHHHHHcCCceEEEE
Confidence 789999999765554321111 22344555677877787655544
No 52
>PRK05785 hypothetical protein; Provisional
Probab=93.18 E-value=0.11 Score=46.38 Aligned_cols=75 Identities=19% Similarity=0.215 Sum_probs=43.4
Q ss_pred eeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCcc
Q 024268 53 VFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSF 132 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSF 132 (270)
.-+|.|+||.+|..+..+. ++. ..+|+.-|+ +-+.=.+.+. ..-+ +-+++
T Consensus 52 ~~~VLDlGcGtG~~~~~l~--------~~~--------~~~v~gvD~-S~~Ml~~a~~----------~~~~---~~~d~ 101 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFK--------KVF--------KYYVVALDY-AENMLKMNLV----------ADDK---VVGSF 101 (226)
T ss_pred CCeEEEEcCCCCHHHHHHH--------Hhc--------CCEEEEECC-CHHHHHHHHh----------ccce---EEech
Confidence 5699999999997765432 221 134555553 1111111110 0111 22344
Q ss_pred ccCCcCCCceeEEEcccccccccCC
Q 024268 133 YGRLFPTNSLQLVHSSYGVHWLSKV 157 (270)
Q Consensus 133 Y~rLfP~~Svh~~~Ss~alHWLS~~ 157 (270)
-.-=||++|.|.++++++|||+...
T Consensus 102 ~~lp~~d~sfD~v~~~~~l~~~~d~ 126 (226)
T PRK05785 102 EALPFRDKSFDVVMSSFALHASDNI 126 (226)
T ss_pred hhCCCCCCCEEEEEecChhhccCCH
Confidence 4434789999999999999997553
No 53
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=92.94 E-value=0.095 Score=47.31 Aligned_cols=18 Identities=28% Similarity=0.530 Sum_probs=11.2
Q ss_pred CCceeEEeeecCCCCccc
Q 024268 50 WNKVFNVADLGCASNAST 67 (270)
Q Consensus 50 ~~~~~~IADlGCS~G~NS 67 (270)
.|+..+|||+||.++.-+
T Consensus 70 ~~~~~viaD~GCGdA~la 87 (219)
T PF05148_consen 70 RPKSLVIADFGCGDAKLA 87 (219)
T ss_dssp S-TTS-EEEES-TT-HHH
T ss_pred cCCCEEEEECCCchHHHH
Confidence 367799999999998543
No 54
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=92.70 E-value=0.25 Score=47.22 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=39.7
Q ss_pred eEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCccc
Q 024268 54 FNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFY 133 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSFY 133 (270)
-+|+|+||.+|..++. +.++ .|..+|...|.-. ..|=..- .....+.+-...+++..+
T Consensus 198 g~VLDlGCG~G~ls~~--------la~~-------~p~~~v~~vDis~---~Al~~A~----~nl~~n~l~~~~~~~D~~ 255 (342)
T PRK09489 198 GKVLDVGCGAGVLSAV--------LARH-------SPKIRLTLSDVSA---AALESSR----ATLAANGLEGEVFASNVF 255 (342)
T ss_pred CeEEEeccCcCHHHHH--------HHHh-------CCCCEEEEEECCH---HHHHHHH----HHHHHcCCCCEEEEcccc
Confidence 3799999999975442 2222 2556788877632 1111110 000001110111233334
Q ss_pred cCCcCCCceeEEEccccccc
Q 024268 134 GRLFPTNSLQLVHSSYGVHW 153 (270)
Q Consensus 134 ~rLfP~~Svh~~~Ss~alHW 153 (270)
.. .++..|+++|...+||
T Consensus 256 ~~--~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 256 SD--IKGRFDMIISNPPFHD 273 (342)
T ss_pred cc--cCCCccEEEECCCccC
Confidence 32 2568999999988887
No 55
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=92.45 E-value=0.47 Score=43.00 Aligned_cols=83 Identities=14% Similarity=0.090 Sum_probs=42.6
Q ss_pred ceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCc
Q 024268 52 KVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGS 131 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgS 131 (270)
..-+|+|+||.+|..++.+. +.. .+.-+|+--|.-.+ .-...+.. .....-.++ ..+.+.
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a--------~~~------g~~~~v~gvD~s~~-~l~~A~~~---~~~~g~~~v--~~~~~d 136 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAA--------RRV------GPTGKVIGVDMTPE-MLAKARAN---ARKAGYTNV--EFRLGE 136 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHH--------HHh------CCCCEEEEECCCHH-HHHHHHHH---HHHcCCCCE--EEEEcc
Confidence 45699999999996654322 111 12245666664321 11111110 000000111 122344
Q ss_pred cccCCcCCCceeEEEcccccccc
Q 024268 132 FYGRLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 132 FY~rLfP~~Svh~~~Ss~alHWL 154 (270)
+..--+|++++|++++...+||.
T Consensus 137 ~~~l~~~~~~fD~Vi~~~v~~~~ 159 (272)
T PRK11873 137 IEALPVADNSVDVIISNCVINLS 159 (272)
T ss_pred hhhCCCCCCceeEEEEcCcccCC
Confidence 43333678899999999999983
No 56
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=92.41 E-value=0.53 Score=43.36 Aligned_cols=114 Identities=20% Similarity=0.251 Sum_probs=68.8
Q ss_pred CceeEEeeecCCCCccchHHHHH--------------HHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhh
Q 024268 51 NKVFNVADLGCASNASTFSVMSS--------------VIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFAD 116 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~--------------ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~ 116 (270)
+..-+|+|+||..|.-++.+.+. ..+..+ +..+.+.-...|+|+.-| ++...+..+
T Consensus 43 ~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~-~nv~ln~l~~ri~v~~~D-----i~~~~~~~~---- 112 (248)
T COG4123 43 PKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQ-RNVALNPLEERIQVIEAD-----IKEFLKALV---- 112 (248)
T ss_pred ccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHH-HHHHhCcchhceeEehhh-----HHHhhhccc----
Confidence 45789999999999988877654 111111 111222223457777666 333333222
Q ss_pred ccCCCceeeeccCCccccCCcCCCceeEEEcccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHH
Q 024268 117 RYNDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDF 196 (270)
Q Consensus 117 ~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl 196 (270)
..+.|+++| .| +.... ... ..+.+.++-.+.+..-++
T Consensus 113 ----------------------~~~fD~Ii~---------NP-----Pyf~~----~~~---~~~~~~~~~Ar~e~~~~l 149 (248)
T COG4123 113 ----------------------FASFDLIIC---------NP-----PYFKQ----GSR---LNENPLRAIARHEITLDL 149 (248)
T ss_pred ----------------------ccccCEEEe---------CC-----CCCCC----ccc---cCcChhhhhhhhhhcCCH
Confidence 226677765 36 33222 221 123345555666777899
Q ss_pred HHHHhccccccccCceEEEEe
Q 024268 197 SLFLKSRSQEMVPNGRLVLVF 217 (270)
Q Consensus 197 ~~FL~~Ra~EL~~GG~lvl~~ 217 (270)
..+++.=++=|++||.+.++.
T Consensus 150 e~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 150 EDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred HHHHHHHHHHccCCCEEEEEe
Confidence 999999999999999987765
No 57
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=92.38 E-value=0.35 Score=41.91 Aligned_cols=20 Identities=30% Similarity=0.625 Sum_probs=16.7
Q ss_pred CCcCCCceeEEEcccccccc
Q 024268 135 RLFPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 135 rLfP~~Svh~~~Ss~alHWL 154 (270)
.++|++++|.++..+..+|-
T Consensus 81 ~~~~~~~~d~v~~~~pdpw~ 100 (194)
T TIGR00091 81 KFFPDGSLSKVFLNFPDPWP 100 (194)
T ss_pred hhCCCCceeEEEEECCCcCC
Confidence 45778899999999998993
No 58
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=91.89 E-value=0.4 Score=36.67 Aligned_cols=18 Identities=28% Similarity=0.567 Sum_probs=12.9
Q ss_pred EeeecCCCCccchHHHHH
Q 024268 56 VADLGCASNASTFSVMSS 73 (270)
Q Consensus 56 IADlGCS~G~NSl~~v~~ 73 (270)
|.|+||.+|.++..+...
T Consensus 1 ILDlgcG~G~~~~~l~~~ 18 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARR 18 (101)
T ss_dssp -EEET-TTSHHHHHHHHH
T ss_pred CEEeecCCcHHHHHHHHH
Confidence 789999999987766543
No 59
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=91.59 E-value=0.46 Score=34.10 Aligned_cols=16 Identities=38% Similarity=0.781 Sum_probs=12.7
Q ss_pred EEeeecCCCCccchHH
Q 024268 55 NVADLGCASNASTFSV 70 (270)
Q Consensus 55 ~IADlGCS~G~NSl~~ 70 (270)
+|+|+||..|..+..+
T Consensus 1 ~ildig~G~G~~~~~~ 16 (107)
T cd02440 1 RVLDLGCGTGALALAL 16 (107)
T ss_pred CeEEEcCCccHHHHHH
Confidence 5899999999876544
No 60
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=91.28 E-value=0.85 Score=42.79 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=25.5
Q ss_pred HHHHHHHHHhccccccccCceEEEEeecCCC
Q 024268 192 FEEDFSLFLKSRSQEMVPNGRLVLVFNGRPS 222 (270)
Q Consensus 192 ~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~~ 222 (270)
..+.+..|++.=.+=|+|||+|++-.++...
T Consensus 151 g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 151 GKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred CcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 3456777888878889999999999988776
No 61
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=90.92 E-value=2 Score=41.70 Aligned_cols=19 Identities=21% Similarity=0.307 Sum_probs=15.0
Q ss_pred ceeEEeeecCCCCccchHH
Q 024268 52 KVFNVADLGCASNASTFSV 70 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~ 70 (270)
...+|+|+||..|..++.+
T Consensus 167 ~g~rVLDIGcG~G~~a~~l 185 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYA 185 (383)
T ss_pred CCCEEEEeCCCccHHHHHH
Confidence 3469999999999876544
No 62
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=90.49 E-value=0.89 Score=38.58 Aligned_cols=18 Identities=11% Similarity=0.270 Sum_probs=14.3
Q ss_pred eEEeeecCCCCccchHHH
Q 024268 54 FNVADLGCASNASTFSVM 71 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v 71 (270)
-+|+|+||.+|..++.+.
T Consensus 21 ~~vLdlG~G~G~~~~~l~ 38 (179)
T TIGR00537 21 DDVLEIGAGTGLVAIRLK 38 (179)
T ss_pred CeEEEeCCChhHHHHHHH
Confidence 579999999998766443
No 63
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=90.43 E-value=1.1 Score=42.75 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=31.8
Q ss_pred CceeEEEcccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhccccccccCceEEEEee
Q 024268 140 NSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVLVFN 218 (270)
Q Consensus 140 ~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~ 218 (270)
...|++-+-+|||+.=. +. +-...||+.=++=|+|||.++-+++
T Consensus 144 ~~FDvVScQFalHY~Fe-----------------------se------------~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 144 RKFDVVSCQFALHYAFE-----------------------SE------------EKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp S-EEEEEEES-GGGGGS-----------------------SH------------HHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCcceeehHHHHHHhcC-----------------------CH------------HHHHHHHHHHHHhcCCCCEEEEEec
Confidence 58899999999999322 11 2234577777888999999999987
No 64
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=90.36 E-value=0.99 Score=44.18 Aligned_cols=81 Identities=14% Similarity=0.251 Sum_probs=43.2
Q ss_pred eEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCccc
Q 024268 54 FNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFY 133 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSFY 133 (270)
-.++|+||++|..++.... + .|+..++.-|.-..=-..+-+.+.. ..+ .++.+.-.-....
T Consensus 124 p~vLEIGcGsG~~ll~lA~--------~-------~P~~~~iGIEI~~~~i~~a~~ka~~--~gL--~NV~~i~~DA~~l 184 (390)
T PRK14121 124 KILIEIGFGSGRHLLYQAK--------N-------NPNKLFIGIEIHTPSIEQVLKQIEL--LNL--KNLLIINYDARLL 184 (390)
T ss_pred CeEEEEcCcccHHHHHHHH--------h-------CCCCCEEEEECCHHHHHHHHHHHHH--cCC--CcEEEEECCHHHh
Confidence 4799999999977553332 1 2445555555432222222222211 011 2333332222222
Q ss_pred cCCcCCCceeEEEccccccc
Q 024268 134 GRLFPTNSLQLVHSSYGVHW 153 (270)
Q Consensus 134 ~rLfP~~Svh~~~Ss~alHW 153 (270)
...+|++|+|.++..+...|
T Consensus 185 l~~~~~~s~D~I~lnFPdPW 204 (390)
T PRK14121 185 LELLPSNSVEKIFVHFPVPW 204 (390)
T ss_pred hhhCCCCceeEEEEeCCCCc
Confidence 34689999999998777777
No 65
>PRK14968 putative methyltransferase; Provisional
Probab=90.32 E-value=6.2 Score=32.89 Aligned_cols=22 Identities=27% Similarity=0.552 Sum_probs=17.0
Q ss_pred HHHHHhccccccccCceEEEEe
Q 024268 196 FSLFLKSRSQEMVPNGRLVLVF 217 (270)
Q Consensus 196 l~~FL~~Ra~EL~~GG~lvl~~ 217 (270)
+..|++.=.+-|+|||.+++..
T Consensus 127 ~~~~i~~~~~~Lk~gG~~~~~~ 148 (188)
T PRK14968 127 IDRFLDEVGRYLKPGGRILLLQ 148 (188)
T ss_pred HHHHHHHHHHhcCCCeEEEEEE
Confidence 4566777677889999998765
No 66
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=90.04 E-value=0.78 Score=42.82 Aligned_cols=35 Identities=34% Similarity=0.363 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCceEEEEeecCC
Q 024268 182 VAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVLVFNGRP 221 (270)
Q Consensus 182 ~~v~~ay~~Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~ 221 (270)
.+|.+-++ |...||.+=.+-|+|||+++++-+-|.
T Consensus 165 sevleHV~-----dp~~~l~~l~~~lkP~G~lfittinrt 199 (282)
T KOG1270|consen 165 SEVLEHVK-----DPQEFLNCLSALLKPNGRLFITTINRT 199 (282)
T ss_pred HHHHHHHh-----CHHHHHHHHHHHhCCCCceEeeehhhh
Confidence 35666554 999999999999999999999988774
No 67
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=90.03 E-value=1.5 Score=42.74 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=41.4
Q ss_pred eEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCc-eeeeccCCcc
Q 024268 54 FNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDAS-LFMMGAPGSF 132 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~-~f~~~vpgSF 132 (270)
-+|+|+||.+|.-++. +.++ .|+.+|+..|... -.+ .............. .-+..+.+..
T Consensus 230 ~~VLDLGCGtGvi~i~--------la~~-------~P~~~V~~vD~S~---~Av-~~A~~N~~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 230 GEIVDLGCGNGVIGLT--------LLDK-------NPQAKVVFVDESP---MAV-ASSRLNVETNMPEALDRCEFMINNA 290 (378)
T ss_pred CeEEEEeccccHHHHH--------HHHh-------CCCCEEEEEECCH---HHH-HHHHHHHHHcCcccCceEEEEEccc
Confidence 4899999999964442 2222 2668888888742 111 11111100000000 0112223444
Q ss_pred ccCCcCCCceeEEEccccccc
Q 024268 133 YGRLFPTNSLQLVHSSYGVHW 153 (270)
Q Consensus 133 Y~rLfP~~Svh~~~Ss~alHW 153 (270)
+..+ +..+.|+++|.--+|+
T Consensus 291 l~~~-~~~~fDlIlsNPPfh~ 310 (378)
T PRK15001 291 LSGV-EPFRFNAVLCNPPFHQ 310 (378)
T ss_pred cccC-CCCCEEEEEECcCccc
Confidence 4443 5568999999766776
No 68
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=89.89 E-value=1.3 Score=39.77 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=18.7
Q ss_pred ceeEEeeecCCCCccchHHHHHHHH
Q 024268 52 KVFNVADLGCASNASTFSVMSSVIE 76 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ii~ 76 (270)
...+|.++||.||.+|. +++.++.
T Consensus 72 ~g~~VLEIGtGsGY~aA-vla~l~~ 95 (209)
T COG2518 72 PGDRVLEIGTGSGYQAA-VLARLVG 95 (209)
T ss_pred CCCeEEEECCCchHHHH-HHHHHhC
Confidence 45899999999999987 4455544
No 69
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=89.48 E-value=0.66 Score=42.82 Aligned_cols=16 Identities=31% Similarity=0.740 Sum_probs=15.2
Q ss_pred CCCceeEEEccccccc
Q 024268 138 PTNSLQLVHSSYGVHW 153 (270)
Q Consensus 138 P~~Svh~~~Ss~alHW 153 (270)
+++|||++.+.-|+||
T Consensus 97 ~e~SVDlI~~Aqa~HW 112 (261)
T KOG3010|consen 97 GEESVDLITAAQAVHW 112 (261)
T ss_pred CCcceeeehhhhhHHh
Confidence 3899999999999999
No 70
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=87.97 E-value=2.1 Score=37.18 Aligned_cols=18 Identities=22% Similarity=0.344 Sum_probs=14.6
Q ss_pred ceeEEeeecCCCCccchH
Q 024268 52 KVFNVADLGCASNASTFS 69 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~ 69 (270)
...+|.|+||++|..+..
T Consensus 45 ~~~~vLdlG~G~G~~~~~ 62 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEP 62 (224)
T ss_pred CCCeEEEECCCCCHHHHH
Confidence 468999999999976553
No 71
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=87.94 E-value=5 Score=39.24 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=18.0
Q ss_pred HHHHHHHhccccccccCceEEEEee
Q 024268 194 EDFSLFLKSRSQEMVPNGRLVLVFN 218 (270)
Q Consensus 194 ~Dl~~FL~~Ra~EL~~GG~lvl~~~ 218 (270)
+....+|+.=++-|+|||+|+.+..
T Consensus 349 ~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 349 ALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 3445566666678999999987664
No 72
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=87.65 E-value=0.7 Score=43.29 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=15.6
Q ss_pred CCceeEEeeecCCCCccch
Q 024268 50 WNKVFNVADLGCASNASTF 68 (270)
Q Consensus 50 ~~~~~~IADlGCS~G~NSl 68 (270)
-++..+|||+||..+.-+.
T Consensus 178 r~~~~vIaD~GCGEakiA~ 196 (325)
T KOG3045|consen 178 RPKNIVIADFGCGEAKIAS 196 (325)
T ss_pred CcCceEEEecccchhhhhh
Confidence 3788999999999986543
No 73
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=87.10 E-value=3 Score=36.64 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=13.4
Q ss_pred ceeEEeeecCCCCccch
Q 024268 52 KVFNVADLGCASNASTF 68 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl 68 (270)
...+|.|+||++|..+.
T Consensus 48 ~~~~vLdiG~G~G~~~~ 64 (233)
T PRK05134 48 FGKRVLDVGCGGGILSE 64 (233)
T ss_pred CCCeEEEeCCCCCHHHH
Confidence 35789999999997544
No 74
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=86.43 E-value=5.2 Score=34.92 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=15.6
Q ss_pred CceeEEeeecCCCCccchHH
Q 024268 51 NKVFNVADLGCASNASTFSV 70 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~ 70 (270)
.+.-+|.|+||++|..+..+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~l 73 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIEL 73 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHH
Confidence 34679999999999766543
No 75
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=86.38 E-value=4.6 Score=40.66 Aligned_cols=74 Identities=14% Similarity=0.258 Sum_probs=38.5
Q ss_pred eeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHh-cchhhhhccCCCceeeeccCCc
Q 024268 53 VFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFK-GLSSFADRYNDASLFMMGAPGS 131 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~-~L~~~~~~~~~~~~f~~~vpgS 131 (270)
..+|+|+||++|..++.+.. . .|..+|+.-|.-. +.-.+.+ ++.. ..+. .+ +..+-++
T Consensus 139 ~~~VLDlG~GsG~iai~la~--------~-------~p~~~v~avDis~-~al~~A~~N~~~--~~l~-~~--v~~~~~D 197 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLC--------E-------LPNANVIATDISL-DAIEVAKSNAIK--YEVT-DR--IQIIHSN 197 (506)
T ss_pred CCEEEEccCchhHHHHHHHH--------H-------CCCCeEEEEECCH-HHHHHHHHHHHH--cCCc-cc--eeeeecc
Confidence 46899999999977664432 1 1346777777632 1111111 1110 0111 11 2223445
Q ss_pred cccCCcCCCceeEEEcc
Q 024268 132 FYGRLFPTNSLQLVHSS 148 (270)
Q Consensus 132 FY~rLfP~~Svh~~~Ss 148 (270)
++.. +|.++.|+++|.
T Consensus 198 ~~~~-~~~~~fDlIvsN 213 (506)
T PRK01544 198 WFEN-IEKQKFDFIVSN 213 (506)
T ss_pred hhhh-CcCCCccEEEEC
Confidence 5443 356788999985
No 76
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=85.86 E-value=5.3 Score=36.98 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=16.4
Q ss_pred ceeEEeeecCCCCccchHHHHH
Q 024268 52 KVFNVADLGCASNASTFSVMSS 73 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~ 73 (270)
.-.+|.|+||+-|..++.+...
T Consensus 62 ~G~~vLDiGcGwG~~~~~~a~~ 83 (273)
T PF02353_consen 62 PGDRVLDIGCGWGGLAIYAAER 83 (273)
T ss_dssp TT-EEEEES-TTSHHHHHHHHH
T ss_pred CCCEEEEeCCCccHHHHHHHHH
Confidence 4479999999999988876654
No 77
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=85.63 E-value=2.3 Score=38.70 Aligned_cols=21 Identities=24% Similarity=0.463 Sum_probs=16.4
Q ss_pred ceeEEeeecCCCCccchHHHH
Q 024268 52 KVFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~ 72 (270)
..-+|.|+||++|..+..+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~ 105 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALAD 105 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHH
Confidence 346799999999988765543
No 78
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=84.64 E-value=2.7 Score=41.39 Aligned_cols=28 Identities=11% Similarity=-0.075 Sum_probs=20.1
Q ss_pred HHHHHHHhccccccccCceEEEEeecCC
Q 024268 194 EDFSLFLKSRSQEMVPNGRLVLVFNGRP 221 (270)
Q Consensus 194 ~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~ 221 (270)
+.-...|..=++=|+|||.|+.+.....
T Consensus 343 ~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 343 EIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 3445567666677899999988776554
No 79
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=84.09 E-value=2 Score=36.98 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=17.7
Q ss_pred cCCCceeEEEcccccccccC
Q 024268 137 FPTNSLQLVHSSYGVHWLSK 156 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWLS~ 156 (270)
+|+++.|++++..++||+..
T Consensus 71 ~~~~sfD~Vi~~~~l~~~~d 90 (194)
T TIGR02081 71 FPDKSFDYVILSQTLQATRN 90 (194)
T ss_pred cCCCCcCEEEEhhHhHcCcC
Confidence 67899999999999999754
No 80
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=83.30 E-value=1.3 Score=37.22 Aligned_cols=18 Identities=22% Similarity=0.436 Sum_probs=16.3
Q ss_pred cCCCceeEEEcccccccc
Q 024268 137 FPTNSLQLVHSSYGVHWL 154 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWL 154 (270)
+|+++.|++++.+++||+
T Consensus 40 ~~~~~fD~v~~~~~l~~~ 57 (160)
T PLN02232 40 FDDCEFDAVTMGYGLRNV 57 (160)
T ss_pred CCCCCeeEEEecchhhcC
Confidence 578899999999999996
No 81
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=83.07 E-value=3.2 Score=39.27 Aligned_cols=51 Identities=18% Similarity=0.261 Sum_probs=33.8
Q ss_pred eeEEeeecCCCCccchHHHHH--------------HHHHHHHHHhhcCCCCCceEEEecCCCCCch
Q 024268 53 VFNVADLGCASNASTFSVMSS--------------VIENVQKKCVELNAPIPEFQLYLNDLPGNDF 104 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~--------------ii~~i~~~~~~~~~~~peiqv~~nDLP~NDF 104 (270)
.-.|+|+||.+|.-|+.++.. +|....+.++...-. --|.|.++|+-+-=|
T Consensus 149 ~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~-g~i~v~~~~me~d~~ 213 (328)
T KOG2904|consen 149 HTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLS-GRIEVIHNIMESDAS 213 (328)
T ss_pred cceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhc-CceEEEecccccccc
Confidence 348999999999999876643 344445544443322 348899988765433
No 82
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=82.57 E-value=4.9 Score=39.42 Aligned_cols=20 Identities=20% Similarity=0.059 Sum_probs=16.3
Q ss_pred eeEEeeecCCCCccchHHHH
Q 024268 53 VFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~ 72 (270)
.-+|.|+||++|.-|+.+..
T Consensus 251 g~~VLDlgaG~G~~t~~la~ 270 (444)
T PRK14902 251 GDTVLDACAAPGGKTTHIAE 270 (444)
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 35899999999998885554
No 83
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=82.08 E-value=20 Score=32.13 Aligned_cols=141 Identities=15% Similarity=0.129 Sum_probs=78.4
Q ss_pred HHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHH
Q 024268 29 IELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLF 108 (270)
Q Consensus 29 i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF 108 (270)
.++.+.-|.+++++.+... .. +|.++||.+|--+..+ .++ .|.++--=+|...+-+.++-
T Consensus 7 aeRNk~pIl~vL~~~l~~~----~~-~vLEiaSGtGqHa~~F--------A~~-------lP~l~WqPSD~~~~~~~sI~ 66 (204)
T PF06080_consen 7 AERNKDPILEVLKQYLPDS----GT-RVLEIASGTGQHAVYF--------AQA-------LPHLTWQPSDPDDNLRPSIR 66 (204)
T ss_pred hhhCHhHHHHHHHHHhCcc----Cc-eEEEEcCCccHHHHHH--------HHH-------CCCCEEcCCCCChHHHhhHH
Confidence 3455666677777765433 22 8999999999654332 222 36688888999998887776
Q ss_pred hcchhhhhccCCCceeeec-cC-Ccccc-CCcCCCceeEEEcccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHH
Q 024268 109 KGLSSFADRYNDASLFMMG-AP-GSFYG-RLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVK 185 (270)
Q Consensus 109 ~~L~~~~~~~~~~~~f~~~-vp-gSFY~-rLfP~~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~ 185 (270)
.-+....-.-..+++.+=. -+ -+--. --++..++|.+++.+.+|-. | .+.|
T Consensus 67 a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~~~N~lHI~---p----------------------~~~~- 120 (204)
T PF06080_consen 67 AWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIFCINMLHIS---P----------------------WSAV- 120 (204)
T ss_pred HHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceeeehhHHHhc---C----------------------HHHH-
Confidence 6544311110011221111 11 00000 01256778888888888872 2 1233
Q ss_pred HHHHHHHHHHHHHHHhccccccccCceEEEEeecCCCCCCC
Q 024268 186 EAYLRQFEEDFSLFLKSRSQEMVPNGRLVLVFNGRPSADFT 226 (270)
Q Consensus 186 ~ay~~Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~~~~~~ 226 (270)
+...+ .=++-|++||.|++.-+-..++..+
T Consensus 121 ~~lf~-----------~a~~~L~~gG~L~~YGPF~~~G~~t 150 (204)
T PF06080_consen 121 EGLFA-----------GAARLLKPGGLLFLYGPFNRDGKFT 150 (204)
T ss_pred HHHHH-----------HHHHhCCCCCEEEEeCCcccCCEeC
Confidence 22222 2246788999999887755444333
No 84
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=82.05 E-value=6.5 Score=36.89 Aligned_cols=119 Identities=17% Similarity=0.259 Sum_probs=67.2
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhh---hccCCCceeeec
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFA---DRYNDASLFMMG 127 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~---~~~~~~~~f~~~ 127 (270)
++.+++.|.+|.+|-.++.++. .+..+. +. .+=+|.-.| +|.=--.+..-. ..|++.+++.-
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~----~v~s~~---~~--~~~~V~v~D-----inp~mL~vgkqRa~~~~l~~~~~~~w- 163 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILR----HVKSQF---GD--RESKVTVLD-----INPHMLAVGKQRAKKRPLKASSRVEW- 163 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHH----hhcccc---CC--CCceEEEEe-----CCHHHHHHHHHHHhhcCCCcCCceEE-
Confidence 3569999999999999986654 444321 11 123344444 443222222111 12333322221
Q ss_pred cCCccccCCcCCCceeEEEcccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhcccccc
Q 024268 128 APGSFYGRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEM 207 (270)
Q Consensus 128 vpgSFY~rLfP~~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~Ra~EL 207 (270)
+.|.=-.==||++|.|....++.+.-.-+. .....|||+ =|
T Consensus 164 ~~~dAE~LpFdd~s~D~yTiafGIRN~th~-----------------------~k~l~EAYR----------------VL 204 (296)
T KOG1540|consen 164 VEGDAEDLPFDDDSFDAYTIAFGIRNVTHI-----------------------QKALREAYR----------------VL 204 (296)
T ss_pred EeCCcccCCCCCCcceeEEEecceecCCCH-----------------------HHHHHHHHH----------------hc
Confidence 222222222899999999998887642221 124567776 48
Q ss_pred ccCceEEEEeecCCCC
Q 024268 208 VPNGRLVLVFNGRPSA 223 (270)
Q Consensus 208 ~~GG~lvl~~~gr~~~ 223 (270)
||||++.|.-+..-+.
T Consensus 205 KpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 205 KPGGRFSCLEFSKVEN 220 (296)
T ss_pred CCCcEEEEEEcccccc
Confidence 9999999887776653
No 85
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=80.29 E-value=15 Score=36.07 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=19.2
Q ss_pred HHHHHHHhccccccccCceEEEEeecC
Q 024268 194 EDFSLFLKSRSQEMVPNGRLVLVFNGR 220 (270)
Q Consensus 194 ~Dl~~FL~~Ra~EL~~GG~lvl~~~gr 220 (270)
+.-..+|+.=++=|+|||+|+.....-
T Consensus 354 ~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 354 GLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred HHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 344556766667789999999876544
No 86
>PHA03411 putative methyltransferase; Provisional
Probab=79.59 E-value=10 Score=35.66 Aligned_cols=26 Identities=23% Similarity=0.453 Sum_probs=21.4
Q ss_pred HHHHHhccccccccCceEEEEeecCC
Q 024268 196 FSLFLKSRSQEMVPNGRLVLVFNGRP 221 (270)
Q Consensus 196 l~~FL~~Ra~EL~~GG~lvl~~~gr~ 221 (270)
+..||+..+.=|+|+|...+.+-|++
T Consensus 162 ~~~~l~~v~~~L~p~G~~~~~yss~~ 187 (279)
T PHA03411 162 LGQKFADVGYFIVPTGSAGFAYSGRP 187 (279)
T ss_pred HHHHHhhhHheecCCceEEEEEeccc
Confidence 56788888889999998888876665
No 87
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=78.05 E-value=2.8 Score=38.43 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=34.0
Q ss_pred eeEEeeecCCCCccchHHHH------------HHHHHHHHHHhhcCCCCCceEEEecCCCCCchHH
Q 024268 53 VFNVADLGCASNASTFSVMS------------SVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNT 106 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~------------~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFnt 106 (270)
.-+|+|+||++|.-|..+.. .+++.+++... .+.++++..|...-++..
T Consensus 43 ~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~-----~~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 43 GDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFA-----EDNLTIIEGDALKVDLSE 103 (272)
T ss_pred cCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhc-----cCceEEEEChhhcCCHHH
Confidence 46899999999999987776 34444444321 145888888877666554
No 88
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=77.96 E-value=14 Score=36.13 Aligned_cols=128 Identities=13% Similarity=0.139 Sum_probs=64.2
Q ss_pred eeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCcc
Q 024268 53 VFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSF 132 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSF 132 (270)
.-+|.|+||+.|.-|+.+...+ +.-+|+..|.-.+=-..+-+.+... .+ . +-+..+.+.-
T Consensus 239 g~~VLDlcag~G~kt~~la~~~---------------~~~~v~a~D~~~~~l~~~~~n~~r~--g~--~-~~v~~~~~d~ 298 (426)
T TIGR00563 239 EETILDACAAPGGKTTHILELA---------------PQAQVVALDIHEHRLKRVYENLKRL--GL--T-IKAETKDGDG 298 (426)
T ss_pred CCeEEEeCCCccHHHHHHHHHc---------------CCCeEEEEeCCHHHHHHHHHHHHHc--CC--C-eEEEEecccc
Confidence 3689999999999887544211 1235666665333333332232210 00 1 2121122222
Q ss_pred cc--CCcCCCceeEEEc---ccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhcccccc
Q 024268 133 YG--RLFPTNSLQLVHS---SYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQEM 207 (270)
Q Consensus 133 Y~--rLfP~~Svh~~~S---s~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~Ra~EL 207 (270)
.. ...+.++.|.++. .+++.-+.+.| + +.| ..++..+ +.+. +.-..+|..=++=|
T Consensus 299 ~~~~~~~~~~~fD~VllDaPcSg~G~~~~~p-----~-~~~---------~~~~~~~-~~l~----~lQ~~lL~~a~~~L 358 (426)
T TIGR00563 299 RGPSQWAENEQFDRILLDAPCSATGVIRRHP-----D-IKW---------LRKPRDI-AELA----ELQSEILDAIWPLL 358 (426)
T ss_pred ccccccccccccCEEEEcCCCCCCcccccCc-----c-hhh---------cCCHHHH-HHHH----HHHHHHHHHHHHhc
Confidence 11 1225667888874 34555556667 2 223 1123333 2222 23334455545668
Q ss_pred ccCceEEEEeecC
Q 024268 208 VPNGRLVLVFNGR 220 (270)
Q Consensus 208 ~~GG~lvl~~~gr 220 (270)
+|||+||.+...-
T Consensus 359 kpgG~lvystcs~ 371 (426)
T TIGR00563 359 KTGGTLVYATCSV 371 (426)
T ss_pred CCCcEEEEEeCCC
Confidence 9999999876544
No 89
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=75.48 E-value=8.1 Score=32.62 Aligned_cols=74 Identities=15% Similarity=0.225 Sum_probs=40.8
Q ss_pred eeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceeeeccCCcc
Q 024268 53 VFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSF 132 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSF 132 (270)
.-+|+|+||.+|.-++.+.. + .|...|+..|.-.+=-...=+++..+ .. .+ +..+....
T Consensus 32 ~~~vLDlG~G~G~i~~~la~--------~-------~~~~~v~~vDi~~~a~~~a~~n~~~n--~~--~~--v~~~~~d~ 90 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAK--------R-------GPDAKVTAVDINPDALELAKRNAERN--GL--EN--VEVVQSDL 90 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHH--------T-------STCEEEEEEESBHHHHHHHHHHHHHT--TC--TT--EEEEESST
T ss_pred CCeEEEecCChHHHHHHHHH--------h-------CCCCEEEEEcCCHHHHHHHHHHHHhc--Cc--cc--cccccccc
Confidence 45799999999976664432 2 24456777765533333333333221 11 12 34444555
Q ss_pred ccCCcCCCceeEEEcc
Q 024268 133 YGRLFPTNSLQLVHSS 148 (270)
Q Consensus 133 Y~rLfP~~Svh~~~Ss 148 (270)
+..+- ..+.|+++|-
T Consensus 91 ~~~~~-~~~fD~Iv~N 105 (170)
T PF05175_consen 91 FEALP-DGKFDLIVSN 105 (170)
T ss_dssp TTTCC-TTCEEEEEE-
T ss_pred ccccc-ccceeEEEEc
Confidence 55443 7788888874
No 90
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=74.56 E-value=2.1 Score=33.02 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=17.1
Q ss_pred HHHHhccccccccCceEEEEee
Q 024268 197 SLFLKSRSQEMVPNGRLVLVFN 218 (270)
Q Consensus 197 ~~FL~~Ra~EL~~GG~lvl~~~ 218 (270)
..+++.=.+.|+|||.+++.+.
T Consensus 102 ~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 102 QEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred HHHHHHHHHHcCCCCEEEEEec
Confidence 3666777778889999998763
No 91
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=73.94 E-value=11 Score=32.78 Aligned_cols=21 Identities=14% Similarity=0.129 Sum_probs=16.6
Q ss_pred CceeEEeeecCCCCccchHHH
Q 024268 51 NKVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v 71 (270)
+...+|.|+||.+|..++.+.
T Consensus 44 ~~g~~VLDiGcGtG~~al~la 64 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLA 64 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHH
Confidence 346899999999998777544
No 92
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=72.97 E-value=13 Score=33.80 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=16.2
Q ss_pred eeEEeeecCCCCccchHHHH
Q 024268 53 VFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~ 72 (270)
.-+|.|+||+.|.-|+.+.+
T Consensus 72 g~~VLDl~ag~G~kt~~la~ 91 (264)
T TIGR00446 72 PERVLDMAAAPGGKTTQISA 91 (264)
T ss_pred cCEEEEECCCchHHHHHHHH
Confidence 36899999999999875543
No 93
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=72.49 E-value=2.8 Score=26.21 Aligned_cols=19 Identities=5% Similarity=0.102 Sum_probs=16.6
Q ss_pred HHHHHHHHccCCCchhhcc
Q 024268 240 EAIAAMVSEVRSNFQSFLS 258 (270)
Q Consensus 240 ~~l~dmv~eGli~~ee~~~ 258 (270)
..|.+|-+.|+||+|||..
T Consensus 6 ~~L~~l~~~G~IseeEy~~ 24 (31)
T PF09851_consen 6 EKLKELYDKGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHcCCCCHHHHHH
Confidence 4688999999999999963
No 94
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=71.72 E-value=13 Score=34.33 Aligned_cols=19 Identities=21% Similarity=0.218 Sum_probs=15.2
Q ss_pred eeEEeeecCCCCccchHHH
Q 024268 53 VFNVADLGCASNASTFSVM 71 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v 71 (270)
+.+|+|+||.+|..++.+.
T Consensus 122 ~~~vLDlG~GsG~i~~~la 140 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACA 140 (284)
T ss_pred CCEEEEEeCchhHHHHHHH
Confidence 4689999999998766544
No 95
>PRK07402 precorrin-6B methylase; Provisional
Probab=68.70 E-value=11 Score=32.43 Aligned_cols=19 Identities=11% Similarity=0.107 Sum_probs=15.3
Q ss_pred ceeEEeeecCCCCccchHH
Q 024268 52 KVFNVADLGCASNASTFSV 70 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~ 70 (270)
..-+|.|+||.+|..++.+
T Consensus 40 ~~~~VLDiG~G~G~~~~~l 58 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEA 58 (196)
T ss_pred CCCEEEEeCCCCCHHHHHH
Confidence 3468999999999887654
No 96
>PHA03412 putative methyltransferase; Provisional
Probab=68.66 E-value=3.1 Score=38.24 Aligned_cols=55 Identities=20% Similarity=0.212 Sum_probs=33.1
Q ss_pred eeEEeeecCCCCccchHHHHHHHH--------------HHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcc
Q 024268 53 VFNVADLGCASNASTFSVMSSVIE--------------NVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGL 111 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~--------------~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L 111 (270)
.-+|+|+||.+|.-++.+...+.. +++ ..+ ...+.+.+...|+-..+++.-|..+
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~-~Ar---~n~~~~~~~~~D~~~~~~~~~FDlI 118 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYK-LGK---RIVPEATWINADALTTEFDTLFDMA 118 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHH-HHH---hhccCCEEEEcchhcccccCCccEE
Confidence 469999999999888766553210 011 111 1124578888887655555445555
No 97
>PRK01581 speE spermidine synthase; Validated
Probab=68.23 E-value=25 Score=34.36 Aligned_cols=16 Identities=19% Similarity=0.028 Sum_probs=13.5
Q ss_pred CceeEEeeecCCCCcc
Q 024268 51 NKVFNVADLGCASNAS 66 (270)
Q Consensus 51 ~~~~~IADlGCS~G~N 66 (270)
+++-+|+++||+.|..
T Consensus 149 ~~PkrVLIIGgGdG~t 164 (374)
T PRK01581 149 IDPKRVLILGGGDGLA 164 (374)
T ss_pred CCCCEEEEECCCHHHH
Confidence 5667999999999963
No 98
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=67.98 E-value=22 Score=35.83 Aligned_cols=106 Identities=12% Similarity=0.093 Sum_probs=62.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCC
Q 024268 23 PFTQRVIELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGN 102 (270)
Q Consensus 23 ~~Q~~~i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~N 102 (270)
..|++.++...|.+.=...++. ..+.-.+.|+||+.|...+... + + .|+..++--|.-.+
T Consensus 323 ~~q~~~~e~~~p~~~i~~eklf-----~~~~p~~lEIG~G~G~~~~~~A-------~-~-------~p~~~~iGiE~~~~ 382 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKLV-----NEKRKVFLEIGFGMGEHFINQA-------K-M-------NPDALFIGVEVYLN 382 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHhC-----CCCCceEEEECCCchHHHHHHH-------H-h-------CCCCCEEEEEeeHH
Confidence 3788888887777653222221 1345788999999996643221 1 1 35555555555433
Q ss_pred chHHHHhcchhhh-hccCCCceeeeccCCccccCCcCCCceeEEEccccccc
Q 024268 103 DFNTLFKGLSSFA-DRYNDASLFMMGAPGSFYGRLFPTNSLQLVHSSYGVHW 153 (270)
Q Consensus 103 DFntLF~~L~~~~-~~~~~~~~f~~~vpgSFY~rLfP~~Svh~~~Ss~alHW 153 (270)
.+-+.+.... ..+ .|+.+..---.+..+.||++||+-+|-.+.=-|
T Consensus 383 ---~~~~~~~~~~~~~l--~N~~~~~~~~~~~~~~~~~~sv~~i~i~FPDPW 429 (506)
T PRK01544 383 ---GVANVLKLAGEQNI--TNFLLFPNNLDLILNDLPNNSLDGIYILFPDPW 429 (506)
T ss_pred ---HHHHHHHHHHHcCC--CeEEEEcCCHHHHHHhcCcccccEEEEECCCCC
Confidence 3333332211 111 355443333344678899999999999888888
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=67.12 E-value=22 Score=30.80 Aligned_cols=17 Identities=18% Similarity=0.102 Sum_probs=14.9
Q ss_pred ceeEEeeecCCCCccch
Q 024268 52 KVFNVADLGCASNASTF 68 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl 68 (270)
...+|.|+||.+|..|.
T Consensus 78 ~~~~VLeiG~GsG~~t~ 94 (212)
T PRK00312 78 PGDRVLEIGTGSGYQAA 94 (212)
T ss_pred CCCEEEEECCCccHHHH
Confidence 45799999999999876
No 100
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=66.85 E-value=3.7 Score=34.99 Aligned_cols=20 Identities=10% Similarity=0.333 Sum_probs=15.5
Q ss_pred ceeEEeeecCCCCccchHHH
Q 024268 52 KVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v 71 (270)
..-+|+|+||.+|..++.+.
T Consensus 31 ~~~~vLDiG~G~G~~~~~la 50 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAA 50 (187)
T ss_pred CCCEEEEECCcCCHHHHHHH
Confidence 45689999999997766443
No 101
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=64.35 E-value=7.4 Score=35.24 Aligned_cols=37 Identities=19% Similarity=0.073 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHH
Q 024268 32 SKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 32 ~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~ 72 (270)
+--.|++++..... ..+.-+++|+||++|.-|..+..
T Consensus 59 ~~~kL~~~l~~~~~----~~~~~~vlDiG~gtG~~t~~l~~ 95 (228)
T TIGR00478 59 GGEKLKEALEEFNI----DVKNKIVLDVGSSTGGFTDCALQ 95 (228)
T ss_pred hHHHHHHHHHhcCC----CCCCCEEEEcccCCCHHHHHHHH
Confidence 33446666654432 12456899999999988775543
No 102
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=63.66 E-value=14 Score=36.85 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=59.5
Q ss_pred HHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHH------------------HHHHHHHHhhcCCCCCceEEEec
Q 024268 36 LESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSV------------------IENVQKKCVELNAPIPEFQLYLN 97 (270)
Q Consensus 36 le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~i------------------i~~i~~~~~~~~~~~peiqv~~n 97 (270)
|++|+.+.........+..+|.|+||++|+-+...++.. +.+++++-+..+-. ..|+|+..
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~-~~V~vi~~ 248 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWG-DKVTVIHG 248 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTT-TTEEEEES
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCC-CeEEEEeC
Confidence 455555544332101135899999999999987766543 33333332222222 23888887
Q ss_pred CCCCCchHHHHhcchhhhhccCCCceeeeccCCccc-cCCcCCCceeEEEcccccccccCCCCCcCCCCcCCCcCcceEE
Q 024268 98 DLPGNDFNTLFKGLSSFADRYNDASLFMMGAPGSFY-GRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFI 176 (270)
Q Consensus 98 DLP~NDFntLF~~L~~~~~~~~~~~~f~~~vpgSFY-~rLfP~~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i 176 (270)
|.-. +.. -.+-.+-|+=.=|||- +.+.|+ .++ .+-+||...- -.++ ++..+|+
T Consensus 249 d~r~---------v~l----pekvDIIVSElLGsfg~nEl~pE-~Ld-----a~~rfLkp~G-----i~IP--~~~t~yl 302 (448)
T PF05185_consen 249 DMRE---------VEL----PEKVDIIVSELLGSFGDNELSPE-CLD-----AADRFLKPDG-----IMIP--SSYTSYL 302 (448)
T ss_dssp -TTT---------SCH----SS-EEEEEE---BTTBTTTSHHH-HHH-----HGGGGEEEEE-----EEES--SEEEEEE
T ss_pred cccC---------CCC----CCceeEEEEeccCCccccccCHH-HHH-----HHHhhcCCCC-----EEeC--cchhhEE
Confidence 7321 110 0024688888778884 567776 454 3456876532 1222 4456776
Q ss_pred cCCCcH
Q 024268 177 SKTSPV 182 (270)
Q Consensus 177 ~~ss~~ 182 (270)
.--+.+
T Consensus 303 aPiss~ 308 (448)
T PF05185_consen 303 APISSP 308 (448)
T ss_dssp EEEE-H
T ss_pred EEeeCH
Confidence 654444
No 103
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=63.42 E-value=19 Score=31.46 Aligned_cols=80 Identities=15% Similarity=0.339 Sum_probs=44.9
Q ss_pred EEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCceee-eccCCccc
Q 024268 55 NVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLFM-MGAPGSFY 133 (270)
Q Consensus 55 ~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f~-~~vpgSFY 133 (270)
.+.|+||+.|...+ +... . .|+..++--|.-.+=....-+.+.. . .-.|+.+ .+=...+.
T Consensus 20 l~lEIG~G~G~~l~-------~~A~-~-------~Pd~n~iGiE~~~~~v~~a~~~~~~---~-~l~Nv~~~~~da~~~l 80 (195)
T PF02390_consen 20 LILEIGCGKGEFLI-------ELAK-R-------NPDINFIGIEIRKKRVAKALRKAEK---R-GLKNVRFLRGDARELL 80 (195)
T ss_dssp EEEEET-TTSHHHH-------HHHH-H-------STTSEEEEEES-HHHHHHHHHHHHH---H-TTSSEEEEES-CTTHH
T ss_pred eEEEecCCCCHHHH-------HHHH-H-------CCCCCEEEEecchHHHHHHHHHHHh---h-cccceEEEEccHHHHH
Confidence 89999999996533 2222 2 3667777777654433333333221 1 1145444 44566678
Q ss_pred cCCcCCCceeEEEccccccc
Q 024268 134 GRLFPTNSLQLVHSSYGVHW 153 (270)
Q Consensus 134 ~rLfP~~Svh~~~Ss~alHW 153 (270)
..++|++||+-++=.+-=-|
T Consensus 81 ~~~~~~~~v~~i~i~FPDPW 100 (195)
T PF02390_consen 81 RRLFPPGSVDRIYINFPDPW 100 (195)
T ss_dssp HHHSTTTSEEEEEEES----
T ss_pred hhcccCCchheEEEeCCCCC
Confidence 88999999998887776666
No 104
>PF02268 TFIIA_gamma_N: Transcription initiation factor IIA, gamma subunit, helical domain; InterPro: IPR015872 Transcription factor IIA (TFIIA) is one of several factors that form part of a transcription pre-initiation complex along with RNA polymerase II, the TATA-box-binding protein (TBP) and TBP-associated factors, on the TATA-box sequence upstream of the initiation start site. After initiation, some components of the pre-initiation complex (including TFIIA) remain attached and re-initiate a subsequent round of transcription. TFIIA binds to TBP to stabilise TBP binding to the TATA element. TFIIA also inhibits the cytokine HMGB1 (high mobility group 1 protein) binding to TBP [], and can dissociate HMGB1 already bound to TBP/TATA-box. Human and Drosophila TFIIA have three subunits: two large subunits, LN/alpha and LC/beta, derived from the same gene, and a small subunit, S/gamma. Yeast TFIIA has two subunits: a large TOA1 subunit that shows sequence similarity to the N-terminal of LN/alpha and the C-terminal of LC/beta, and a small subunit, TOA2 that is highly homologous with S/gamma. The conserved regions of the large and small subunits of TFIIA combine to form two domains: a four-helix bundle (helical domain) composed of two helices from each of the N-terminal regions of TOA1 and TOA2 in yeast; and a beta-barrel (beta-barrel domain) composed of beta-sheets from the C-terminal regions of TOA1 and TOA2 []. This entry represents the alpha-helical domain found at the N-terminal of the gamma subunit of transcription factor TFIIA.; GO: 0006367 transcription initiation from RNA polymerase II promoter, 0005672 transcription factor TFIIA complex; PDB: 1NVP_D 1RM1_B 1YTF_D 1NH2_D.
Probab=63.40 E-value=8 Score=27.03 Aligned_cols=22 Identities=14% Similarity=0.123 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHccCCCchh
Q 024268 234 PWESLSEAIAAMVSEVRSNFQS 255 (270)
Q Consensus 234 ~~~~l~~~l~dmv~eGli~~ee 255 (270)
+-..|.++|.||+.+|.|+++=
T Consensus 11 lG~aL~dtLDeli~~~~I~p~L 32 (49)
T PF02268_consen 11 LGIALTDTLDELIQEGKITPQL 32 (49)
T ss_dssp HHHHHHHHHHHHHHTTSS-HHH
T ss_pred HHHHHHHHHHHHHHcCCCCHHH
Confidence 5568999999999999999863
No 105
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=62.61 E-value=13 Score=31.22 Aligned_cols=20 Identities=20% Similarity=0.149 Sum_probs=16.7
Q ss_pred eeEEeeecCCCCccchHHHH
Q 024268 53 VFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~ 72 (270)
.-+|.|+||+.|..|..+++
T Consensus 14 ~~~vLEiG~G~G~lt~~l~~ 33 (169)
T smart00650 14 GDTVLEIGPGKGALTEELLE 33 (169)
T ss_pred cCEEEEECCCccHHHHHHHh
Confidence 35899999999998886665
No 106
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=58.76 E-value=30 Score=31.75 Aligned_cols=18 Identities=22% Similarity=0.492 Sum_probs=14.2
Q ss_pred eEEeeecCCCCccchHHH
Q 024268 54 FNVADLGCASNASTFSVM 71 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v 71 (270)
.+|+|+||.+|.-++.+.
T Consensus 116 ~~vLDlG~GsG~i~l~la 133 (284)
T TIGR00536 116 LHILDLGTGSGCIALALA 133 (284)
T ss_pred CEEEEEeccHhHHHHHHH
Confidence 589999999997665443
No 107
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=58.53 E-value=9.2 Score=32.29 Aligned_cols=52 Identities=21% Similarity=0.065 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCC
Q 024268 35 VLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGN 102 (270)
Q Consensus 35 ~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~N 102 (270)
.|.++.++...-. ..+..+++|+|||.|.-|-.++... .+.-.|+--|+...
T Consensus 8 KL~ei~~~~~~~~--~~~~~~vlDlG~aPGGws~~~~~~~--------------~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 8 KLYEIDEKFKIFK--PGKGFTVLDLGAAPGGWSQVLLQRG--------------GPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHTTSSS---TTTTEEEEEET-TTSHHHHHHHTST--------------TTEEEEEEEESSST
T ss_pred HHHHHHHHCCCCC--cccccEEEEcCCcccceeeeeeecc--------------cccceEEEEecccc
Confidence 3555555443122 2367999999999997655333222 24477888888766
No 108
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=58.42 E-value=12 Score=32.62 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=15.5
Q ss_pred ceeEEeeecCCCCccchHH
Q 024268 52 KVFNVADLGCASNASTFSV 70 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~ 70 (270)
..-+|.|+||.+|..|..+
T Consensus 77 ~~~~VLDiG~GsG~~a~~l 95 (215)
T TIGR00080 77 PGMKVLEIGTGSGYQAAVL 95 (215)
T ss_pred CcCEEEEECCCccHHHHHH
Confidence 3469999999999988643
No 109
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=58.13 E-value=13 Score=35.24 Aligned_cols=30 Identities=33% Similarity=0.459 Sum_probs=21.0
Q ss_pred eEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecC
Q 024268 54 FNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLND 98 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nD 98 (270)
-+|+|+||.-|+-++.+.+ . .|+.++.+.|
T Consensus 160 ~~vlDlGCG~Gvlg~~la~--------~-------~p~~~vtmvD 189 (300)
T COG2813 160 GKVLDLGCGYGVLGLVLAK--------K-------SPQAKLTLVD 189 (300)
T ss_pred CcEEEeCCCccHHHHHHHH--------h-------CCCCeEEEEe
Confidence 3999999999976553322 1 3567777777
No 110
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=57.57 E-value=32 Score=32.23 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=14.6
Q ss_pred eEEeeecCCCCccchHHH
Q 024268 54 FNVADLGCASNASTFSVM 71 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v 71 (270)
.+|.|+||.+|..++.+.
T Consensus 135 ~~VLDlG~GsG~iai~la 152 (307)
T PRK11805 135 TRILDLCTGSGCIAIACA 152 (307)
T ss_pred CEEEEEechhhHHHHHHH
Confidence 589999999998766543
No 111
>PRK04266 fibrillarin; Provisional
Probab=57.48 E-value=6 Score=35.56 Aligned_cols=43 Identities=16% Similarity=0.068 Sum_probs=25.1
Q ss_pred cccccCceEEEEeecCCCCCCCCCCCCcchHHHHHHHHHHHHHccCCCc
Q 024268 205 QEMVPNGRLVLVFNGRPSADFTRDYCYPIPWESLSEAIAAMVSEVRSNF 253 (270)
Q Consensus 205 ~EL~~GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~dmv~eGli~~ 253 (270)
+-|+|||++++++..+.-+-.... -....+.+..|...|.-..
T Consensus 164 r~LKpGG~lvI~v~~~~~d~~~~~------~~~~~~~~~~l~~aGF~~i 206 (226)
T PRK04266 164 FFLKDGGYLLLAIKARSIDVTKDP------KEIFKEEIRKLEEGGFEIL 206 (226)
T ss_pred HhcCCCcEEEEEEecccccCcCCH------HHHHHHHHHHHHHcCCeEE
Confidence 348899999998877642211111 1233555666666775433
No 112
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=56.35 E-value=8.2 Score=33.28 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.1
Q ss_pred eeEEeeecCCCCccchHH
Q 024268 53 VFNVADLGCASNASTFSV 70 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~ 70 (270)
..+|.|+||.+|..++.+
T Consensus 43 ~~~vLDiGcGtG~~s~~l 60 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPL 60 (181)
T ss_pred CCeEEEecCCCCccHHHH
Confidence 578999999999887744
No 113
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=56.07 E-value=25 Score=34.89 Aligned_cols=56 Identities=14% Similarity=0.152 Sum_probs=30.7
Q ss_pred HHHHHhccccccccCceEEEEeecCCCCCCCCCCCCcchHHHHHHHHHHHHHccCCCchhhccccccccccc
Q 024268 196 FSLFLKSRSQEMVPNGRLVLVFNGRPSADFTRDYCYPIPWESLSEAIAAMVSEVRSNFQSFLSSLKLDRTLT 267 (270)
Q Consensus 196 l~~FL~~Ra~EL~~GG~lvl~~~gr~~~~~~~~~~~~~~~~~l~~~l~dmv~eGli~~ee~~~~~~~~~~~~ 267 (270)
+..+++.=.+-|+|||.+++-. |.+ .-..+..-|...|.-.-+.+.+..+.||-+.
T Consensus 360 yr~Ii~~a~~~LkpgG~lilEi-G~~---------------Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~ 415 (423)
T PRK14966 360 IRTLAQGAPDRLAEGGFLLLEH-GFD---------------QGAAVRGVLAENGFSGVETLPDLAGLDRVTL 415 (423)
T ss_pred HHHHHHHHHHhcCCCcEEEEEE-Ccc---------------HHHHHHHHHHHCCCcEEEEEEcCCCCcEEEE
Confidence 3345554445688999986533 321 1112222233357655555667778888653
No 114
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=55.88 E-value=30 Score=31.36 Aligned_cols=48 Identities=15% Similarity=0.096 Sum_probs=32.3
Q ss_pred eeEEeeecCCCCccchHHHHH------------HHHHHHHHHhhcCCCCCceEEEecCCCCCch
Q 024268 53 VFNVADLGCASNASTFSVMSS------------VIENVQKKCVELNAPIPEFQLYLNDLPGNDF 104 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~------------ii~~i~~~~~~~~~~~peiqv~~nDLP~NDF 104 (270)
.-+|.|+||+.|.-|..+... +++.++++... .+.+.++..|.-.-||
T Consensus 30 ~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~----~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 30 GDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA----AGNVEIIEGDALKVDL 89 (258)
T ss_pred cCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc----CCCEEEEEeccccCCc
Confidence 468999999999999987763 44555544321 2458888777654443
No 115
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=52.76 E-value=16 Score=34.07 Aligned_cols=20 Identities=15% Similarity=0.135 Sum_probs=16.7
Q ss_pred eeEEeeecCCCCccchHHHH
Q 024268 53 VFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~ 72 (270)
.-+|.|+||.+|..++.+.+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~ 193 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCAT 193 (315)
T ss_pred CCEEEEccCCCCHHHHHHHh
Confidence 36899999999999886664
No 116
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=52.55 E-value=17 Score=34.45 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=16.7
Q ss_pred ceeEEeeecCCCCccchHHHH
Q 024268 52 KVFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~ 72 (270)
+..+|.|+||.+|..++.+..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~ 164 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLAL 164 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHH
Confidence 357999999999998765543
No 117
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=52.36 E-value=24 Score=36.64 Aligned_cols=71 Identities=20% Similarity=0.226 Sum_probs=42.7
Q ss_pred eEEcCCCcHHHHHH------HHHHHHHHHHHHHhccccccccCceEEEEeecCCC-CCCCCCCCCcchHHHHH-------
Q 024268 174 IFISKTSPVAVKEA------YLRQFEEDFSLFLKSRSQEMVPNGRLVLVFNGRPS-ADFTRDYCYPIPWESLS------- 239 (270)
Q Consensus 174 i~i~~ss~~~v~~a------y~~Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~~-~~~~~~~~~~~~~~~l~------- 239 (270)
||+.+.+|++|.+| |++||+||.--=|.|=.+ .|.++ ++|+- ..++|++-+.
T Consensus 390 iHVNGD~PEevvraTrLAf~Yqr~FRKDvfIdL~CfRr------------wgHnelddp~f--tspvmyk~v~aReSvPd 455 (913)
T KOG0451|consen 390 IHVNGDDPEEVVRATRLAFRYQREFRKDVFIDLNCFRR------------WGHNELDDPTF--TSPVMYKEVEARESVPD 455 (913)
T ss_pred EEeCCCCHHHHHHHHHHHHHHHHHhhhhheeehHHHHH------------hccccccCccc--cChhHHHHHHhhhcccH
Confidence 77888888888764 899999985322222110 12222 23332 1223555443
Q ss_pred HHHHHHHHccCCCchhhcc
Q 024268 240 EAIAAMVSEVRSNFQSFLS 258 (270)
Q Consensus 240 ~~l~dmv~eGli~~ee~~~ 258 (270)
.-+..|+.||++++|++-.
T Consensus 456 lya~~L~~eg~~tee~vkE 474 (913)
T KOG0451|consen 456 LYAQQLAKEGVLTEEKVKE 474 (913)
T ss_pred HHHHHHHhcccccHHHHHH
Confidence 2367899999999999853
No 118
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=51.34 E-value=17 Score=31.72 Aligned_cols=19 Identities=11% Similarity=0.165 Sum_probs=15.1
Q ss_pred eeEEeeecCCCCccchHHH
Q 024268 53 VFNVADLGCASNASTFSVM 71 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v 71 (270)
.-+|.|+||.+|..+..+.
T Consensus 73 ~~~VLDiG~GsG~~~~~la 91 (205)
T PRK13944 73 GMKILEVGTGSGYQAAVCA 91 (205)
T ss_pred CCEEEEECcCccHHHHHHH
Confidence 4689999999998875443
No 119
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=50.81 E-value=27 Score=28.53 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=26.0
Q ss_pred HHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHH
Q 024268 29 IELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 29 i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~ 72 (270)
|.....++.+.++... . ..++.+|.|+||..|.-|..+..
T Consensus 6 i~~~~~~i~~~~~~~~--~--~~~~~~vvD~GsG~GyLs~~La~ 45 (141)
T PF13679_consen 6 IERMAELIDSLCDSVG--E--SKRCITVVDLGSGKGYLSRALAH 45 (141)
T ss_pred HHHHHHHHHHHHHHhh--c--cCCCCEEEEeCCChhHHHHHHHH
Confidence 3444555555554431 1 25689999999999988775443
No 120
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=50.69 E-value=44 Score=31.82 Aligned_cols=82 Identities=10% Similarity=0.206 Sum_probs=45.4
Q ss_pred HHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhh
Q 024268 35 VLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSF 114 (270)
Q Consensus 35 ~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~ 114 (270)
+|++-..++... .+...+|+||||.+|.-+-.+++.+ .+. ...+..+--|+-..==....+.|..
T Consensus 62 iL~~~~~~Ia~~---i~~~~~lIELGsG~~~Kt~~LL~aL----~~~-------~~~~~Y~plDIS~~~L~~a~~~L~~- 126 (319)
T TIGR03439 62 ILKKHSSDIAAS---IPSGSMLVELGSGNLRKVGILLEAL----ERQ-------KKSVDYYALDVSRSELQRTLAELPL- 126 (319)
T ss_pred HHHHHHHHHHHh---cCCCCEEEEECCCchHHHHHHHHHH----Hhc-------CCCceEEEEECCHHHHHHHHHhhhh-
Confidence 444444444433 2455689999999998877666544 322 0125556566543322222233320
Q ss_pred hhccCCCceeeeccCCcccc
Q 024268 115 ADRYNDASLFMMGAPGSFYG 134 (270)
Q Consensus 115 ~~~~~~~~~f~~~vpgSFY~ 134 (270)
..+ +.+=+.++-|.|..
T Consensus 127 -~~~--p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 127 -GNF--SHVRCAGLLGTYDD 143 (319)
T ss_pred -ccC--CCeEEEEEEecHHH
Confidence 111 56778888888864
No 121
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=48.78 E-value=21 Score=33.41 Aligned_cols=52 Identities=12% Similarity=0.197 Sum_probs=35.6
Q ss_pred eeEEeeecCCCCccchHHHHH------------HHHHHHHHHhhcCCCCCceEEEecCCCCCchH
Q 024268 53 VFNVADLGCASNASTFSVMSS------------VIENVQKKCVELNAPIPEFQLYLNDLPGNDFN 105 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~------------ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFn 105 (270)
.-+|.|+||+.|.-|..++.. .++.++++....+. .+.++++..|....|+.
T Consensus 37 ~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~-~~~v~ii~~Dal~~~~~ 100 (294)
T PTZ00338 37 TDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPL-ASKLEVIEGDALKTEFP 100 (294)
T ss_pred cCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCC-CCcEEEEECCHhhhccc
Confidence 458999999999999877653 45666655432221 24589999888666553
No 122
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=48.53 E-value=9.2 Score=34.16 Aligned_cols=44 Identities=18% Similarity=0.256 Sum_probs=27.5
Q ss_pred ceeEEeeecCCCCccchHHH-------------HHHHHHHHHHHhhcCCCCCceEEEecC
Q 024268 52 KVFNVADLGCASNASTFSVM-------------SSVIENVQKKCVELNAPIPEFQLYLND 98 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v-------------~~ii~~i~~~~~~~~~~~peiqv~~nD 98 (270)
+.-+|+|+||.+|.-++... ...+++.++.+.+.+ -.+.++-.|
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~---g~v~f~~~d 101 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELL---GDVEFVVAD 101 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhC---CceEEEEcc
Confidence 34679999999998877432 355666666654421 235555555
No 123
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=48.50 E-value=20 Score=30.50 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=16.4
Q ss_pred HHHHHHhccccccccCceEEEEe
Q 024268 195 DFSLFLKSRSQEMVPNGRLVLVF 217 (270)
Q Consensus 195 Dl~~FL~~Ra~EL~~GG~lvl~~ 217 (270)
+...+|+.=.+-|+|||++++..
T Consensus 124 ~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 124 LVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred HHHHHHHHHHHHccCCCEEEEEE
Confidence 44555666566778999998864
No 124
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=48.40 E-value=12 Score=32.93 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHccCCCchhhccccccc
Q 024268 234 PWESLSEAIAAMVSEVRSNFQSFLSSLKLD 263 (270)
Q Consensus 234 ~~~~l~~~l~dmv~eGli~~ee~~~~~~~~ 263 (270)
.--.+++++..||+||+|..|++ .+.|+|
T Consensus 28 ~~~~VKdvlq~LvDDglV~~EKi-Gssn~Y 56 (188)
T PF03962_consen 28 VSMSVKDVLQSLVDDGLVHVEKI-GSSNYY 56 (188)
T ss_pred chhhHHHHHHHHhccccchhhhc-cCeeEE
Confidence 34578999999999999999998 777765
No 125
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=47.23 E-value=19 Score=32.68 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=15.4
Q ss_pred eeEEeeecCCCCccchHHH
Q 024268 53 VFNVADLGCASNASTFSVM 71 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v 71 (270)
..+|.|+||.+|.-++.+.
T Consensus 87 ~~~vLDlg~GsG~i~l~la 105 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALA 105 (251)
T ss_pred CCEEEEecCchHHHHHHHH
Confidence 4689999999998776544
No 126
>PRK03612 spermidine synthase; Provisional
Probab=46.95 E-value=63 Score=32.63 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=14.6
Q ss_pred CceeEEeeecCCCCccchH
Q 024268 51 NKVFNVADLGCASNASTFS 69 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~ 69 (270)
+++-+|.|+||.+|.-+..
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ 314 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALRE 314 (521)
T ss_pred CCCCeEEEEcCCccHHHHH
Confidence 4567899999999965443
No 127
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=46.82 E-value=21 Score=31.66 Aligned_cols=19 Identities=11% Similarity=-0.125 Sum_probs=16.2
Q ss_pred eeEEeeecCCCCccchHHH
Q 024268 53 VFNVADLGCASNASTFSVM 71 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v 71 (270)
.-+|.|+||..|+|++.+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA 53 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLA 53 (213)
T ss_pred CCeEEEeCCCchhHHHHHH
Confidence 3599999999999988654
No 128
>PRK10079 phosphonate metabolism transcriptional regulator PhnF; Provisional
Probab=46.46 E-value=16 Score=32.45 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhccccccccCceEEEEeecCCCCCCCC---CCCCcchHHHHHHHHHHHHHccCCCchh
Q 024268 190 RQFEEDFSLFLKSRSQEMVPNGRLVLVFNGRPSADFTR---DYCYPIPWESLSEAIAAMVSEVRSNFQS 255 (270)
Q Consensus 190 ~Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~~~~~~~---~~~~~~~~~~l~~~l~dmv~eGli~~ee 255 (270)
.|.+.++..-+. . |++||.+| +++.... +.+ =.-+.+|+.+|++||+|....
T Consensus 15 ~qi~~~L~~~I~--~-~~~~G~~L-------PsE~eLa~~~~VS----R~TVR~Al~~L~~eGli~r~~ 69 (241)
T PRK10079 15 QEIAAKLEQELR--Q-HYRCGDYL-------PAEQQLAARYEVN----RHTLRRAIDQLVEKGWVQRRQ 69 (241)
T ss_pred HHHHHHHHHHHh--c-ccCCCCcC-------CCHHHHHHHHCCC----HHHHHHHHHHHHHCCCEEEec
Confidence 466677777774 4 89999987 5443222 222 257899999999999998654
No 129
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=46.39 E-value=23 Score=31.14 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=15.8
Q ss_pred ceeEEeeecCCCCccchHHH
Q 024268 52 KVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v 71 (270)
+..+|.|+||.+|..|..+.
T Consensus 76 ~g~~VLdIG~GsG~~t~~la 95 (212)
T PRK13942 76 EGMKVLEIGTGSGYHAAVVA 95 (212)
T ss_pred CcCEEEEECCcccHHHHHHH
Confidence 35799999999999875443
No 130
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=45.98 E-value=38 Score=30.09 Aligned_cols=55 Identities=18% Similarity=0.210 Sum_probs=28.4
Q ss_pred eeEEeeecCCCCccchHHH---------------------HHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHH
Q 024268 53 VFNVADLGCASNASTFSVM---------------------SSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTL 107 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v---------------------~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntL 107 (270)
.-++.||||..|.-.+.+. ....+.+++++...+....++++..-|.-.+||...
T Consensus 43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~ 118 (205)
T PF08123_consen 43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKD 118 (205)
T ss_dssp T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhh
Confidence 4689999999997644221 122233333333344445567777777666666543
No 131
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=45.89 E-value=23 Score=31.59 Aligned_cols=36 Identities=14% Similarity=0.088 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHH
Q 024268 32 SKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 32 ~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~ 72 (270)
.-|.|.+.+..+. .++.-+|.|.||..|+|++.+.+
T Consensus 22 p~~~L~~~~~~~~-----~~~~~rvL~~gCG~G~da~~LA~ 57 (218)
T PRK13255 22 VNPLLQKYWPALA-----LPAGSRVLVPLCGKSLDMLWLAE 57 (218)
T ss_pred CCHHHHHHHHhhC-----CCCCCeEEEeCCCChHhHHHHHh
Confidence 4455665554332 12345999999999999886654
No 132
>PRK04148 hypothetical protein; Provisional
Probab=45.15 E-value=49 Score=27.71 Aligned_cols=15 Identities=20% Similarity=0.180 Sum_probs=12.5
Q ss_pred ceeEEeeecCCCCcc
Q 024268 52 KVFNVADLGCASNAS 66 (270)
Q Consensus 52 ~~~~IADlGCS~G~N 66 (270)
+..+|+|+||..|.+
T Consensus 16 ~~~kileIG~GfG~~ 30 (134)
T PRK04148 16 KNKKIVELGIGFYFK 30 (134)
T ss_pred cCCEEEEEEecCCHH
Confidence 457899999999964
No 133
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=45.13 E-value=16 Score=32.53 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=13.8
Q ss_pred cCCCceeEEEccccccccc
Q 024268 137 FPTNSLQLVHSSYGVHWLS 155 (270)
Q Consensus 137 fP~~Svh~~~Ss~alHWLS 155 (270)
||++|.|.++-+-+|+=+.
T Consensus 71 f~d~sFD~VIlsqtLQ~~~ 89 (193)
T PF07021_consen 71 FPDQSFDYVILSQTLQAVR 89 (193)
T ss_pred CCCCCccEEehHhHHHhHh
Confidence 7788888887777776553
No 134
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=44.64 E-value=21 Score=31.48 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=15.2
Q ss_pred eEEeeecCCCCccchHHHH
Q 024268 54 FNVADLGCASNASTFSVMS 72 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v~ 72 (270)
-+|+|+||.+|.-++.+++
T Consensus 55 ~~vLDl~~GsG~l~l~~ls 73 (199)
T PRK10909 55 ARCLDCFAGSGALGLEALS 73 (199)
T ss_pred CEEEEcCCCccHHHHHHHH
Confidence 5899999999988775443
No 135
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=44.22 E-value=15 Score=31.73 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=14.9
Q ss_pred CceeEEeeecCCCCccchH
Q 024268 51 NKVFNVADLGCASNASTFS 69 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~ 69 (270)
...-+|+|+||++|.-++.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~ 57 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVE 57 (198)
T ss_pred CCcCEEEEeCCcCCHHHHH
Confidence 3456999999999976664
No 136
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=43.96 E-value=23 Score=32.73 Aligned_cols=15 Identities=40% Similarity=0.676 Sum_probs=12.7
Q ss_pred eEEeeecCCCCccch
Q 024268 54 FNVADLGCASNASTF 68 (270)
Q Consensus 54 ~~IADlGCS~G~NSl 68 (270)
-+|+|+||++|..++
T Consensus 161 ~~VLDvGcGsG~lai 175 (288)
T TIGR00406 161 KNVIDVGCGSGILSI 175 (288)
T ss_pred CEEEEeCCChhHHHH
Confidence 689999999996554
No 137
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=43.82 E-value=43 Score=31.96 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=35.1
Q ss_pred HHHHHhHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCC
Q 024268 27 RVIELSKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDL 99 (270)
Q Consensus 27 ~~i~~~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDL 99 (270)
++|..-+-.|++.|++-........++++|.|+-|.+|+- +++++.+.- ..| .+|.++|.
T Consensus 110 rGIR~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRY-------vlDal~~~~-----~~~-~~i~LrDy 169 (311)
T PF12147_consen 110 RGIRQRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRY-------VLDALEKHP-----ERP-DSILLRDY 169 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHH-------HHHHHHhCC-----CCC-ceEEEEeC
Confidence 3343334444444443222111125799999999999964 678887641 113 58888773
No 138
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=43.69 E-value=2.6e+02 Score=27.16 Aligned_cols=100 Identities=22% Similarity=0.356 Sum_probs=64.7
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhhhccCCCcee---eec
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFADRYNDASLF---MMG 127 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~~~~~~~~~f---~~~ 127 (270)
...-..+|.|-+.|..+=. |-.++ |.+..+==|+|. +-+. .+++ +--
T Consensus 176 ~~v~~avDvGgGiG~v~k~--------ll~~f-------p~ik~infdlp~-----v~~~----------a~~~~~gV~~ 225 (342)
T KOG3178|consen 176 KGVNVAVDVGGGIGRVLKN--------LLSKY-------PHIKGINFDLPF-----VLAA----------APYLAPGVEH 225 (342)
T ss_pred ccCceEEEcCCcHhHHHHH--------HHHhC-------CCCceeecCHHH-----HHhh----------hhhhcCCcce
Confidence 4567889999999965432 22222 445555445442 1111 1222 555
Q ss_pred cCCccccCCcCCCceeEEEcccccc-cccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhccccc
Q 024268 128 APGSFYGRLFPTNSLQLVHSSYGVH-WLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKSRSQE 206 (270)
Q Consensus 128 vpgSFY~rLfP~~Svh~~~Ss~alH-WLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~Ra~E 206 (270)
|.|-+++- .|+.- .+|--|.|| | + + +|...||+.=.+=
T Consensus 226 v~gdmfq~-~P~~d--aI~mkWiLhdw----t---------D-------------------------edcvkiLknC~~s 264 (342)
T KOG3178|consen 226 VAGDMFQD-TPKGD--AIWMKWILHDW----T---------D-------------------------EDCVKILKNCKKS 264 (342)
T ss_pred eccccccc-CCCcC--eEEEEeecccC----C---------h-------------------------HHHHHHHHHHHHh
Confidence 78888888 88876 666666666 4 2 1 5889999999999
Q ss_pred cccCceEEEEeecCC
Q 024268 207 MVPNGRLVLVFNGRP 221 (270)
Q Consensus 207 L~~GG~lvl~~~gr~ 221 (270)
|.|||.+++.=.-.+
T Consensus 265 L~~~GkIiv~E~V~p 279 (342)
T KOG3178|consen 265 LPPGGKIIVVENVTP 279 (342)
T ss_pred CCCCCEEEEEeccCC
Confidence 999999988755344
No 139
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=43.05 E-value=19 Score=32.22 Aligned_cols=20 Identities=30% Similarity=0.454 Sum_probs=15.6
Q ss_pred ceeEEeeecCCCCccchHHH
Q 024268 52 KVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v 71 (270)
+..+|+|+||++|..++.+.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la 127 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALA 127 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHH
Confidence 45789999999997766443
No 140
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=42.19 E-value=20 Score=32.21 Aligned_cols=15 Identities=33% Similarity=0.479 Sum_probs=12.3
Q ss_pred eeEEeeecCCCCccc
Q 024268 53 VFNVADLGCASNAST 67 (270)
Q Consensus 53 ~~~IADlGCS~G~NS 67 (270)
.-+|+|+||.+|..+
T Consensus 120 ~~~VLDiGcGsG~l~ 134 (250)
T PRK00517 120 GKTVLDVGCGSGILA 134 (250)
T ss_pred CCEEEEeCCcHHHHH
Confidence 468999999999643
No 141
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=39.97 E-value=28 Score=32.77 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=11.4
Q ss_pred eEEeeecCCCCccch
Q 024268 54 FNVADLGCASNASTF 68 (270)
Q Consensus 54 ~~IADlGCS~G~NSl 68 (270)
-+|.|+||.||--++
T Consensus 163 ~~vLDvG~GSGILai 177 (295)
T PF06325_consen 163 KRVLDVGCGSGILAI 177 (295)
T ss_dssp SEEEEES-TTSHHHH
T ss_pred CEEEEeCCcHHHHHH
Confidence 499999999995544
No 142
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=39.76 E-value=97 Score=29.95 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=36.4
Q ss_pred CceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCc
Q 024268 51 NKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGND 103 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~ND 103 (270)
.+.+.|.|||...| .-+...|+++.++. ..+|.+.|.--+.|...
T Consensus 109 ~~~vHIID~~i~~G----~QW~~LiqaLa~R~----~gpp~LrIT~i~~~~~~ 153 (374)
T PF03514_consen 109 ERRVHIIDFGIGFG----VQWPSLIQALASRP----GGPPSLRITGIGPPNSG 153 (374)
T ss_pred CcceEEEeccCCcc----hHHHHHHHHHhcCC----CCCCeEEEEeccCCCCC
Confidence 46899999999999 37778889998763 34678999999997654
No 143
>COG5124 Protein predicted to be involved in meiotic recombination [Cell division and chromosome partitioning / General function prediction only]
Probab=39.17 E-value=23 Score=31.44 Aligned_cols=30 Identities=7% Similarity=0.141 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHccCCCchhhccccccc
Q 024268 233 IPWESLSEAIAAMVSEVRSNFQSFLSSLKLD 263 (270)
Q Consensus 233 ~~~~~l~~~l~dmv~eGli~~ee~~~~~~~~ 263 (270)
++...+.++|.+||++|+++-|++ .-.|+|
T Consensus 40 IVl~tVKd~lQqlVDDgvV~~EK~-GtsN~Y 69 (209)
T COG5124 40 IVLMTVKDLLQQLVDDGVVSVEKC-GTSNIY 69 (209)
T ss_pred cHHHHHHHHHHHHhhcCceeeeee-ccceeE
Confidence 367789999999999999999998 555555
No 144
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=38.98 E-value=16 Score=34.74 Aligned_cols=17 Identities=35% Similarity=0.505 Sum_probs=14.0
Q ss_pred ceeEEeeecCCCCccch
Q 024268 52 KVFNVADLGCASNASTF 68 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl 68 (270)
+..++.|+||.||--|+
T Consensus 162 ~g~~vlDvGcGSGILaI 178 (300)
T COG2264 162 KGKTVLDVGCGSGILAI 178 (300)
T ss_pred CCCEEEEecCChhHHHH
Confidence 46899999999996555
No 145
>PRK00811 spermidine synthase; Provisional
Probab=38.40 E-value=55 Score=30.23 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=16.4
Q ss_pred CceeEEeeecCCCCccchHHH
Q 024268 51 NKVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~v 71 (270)
+++-+|.|+||..|..+..++
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l 95 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVL 95 (283)
T ss_pred CCCCEEEEEecCchHHHHHHH
Confidence 556799999999997765443
No 146
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=37.54 E-value=25 Score=26.89 Aligned_cols=24 Identities=29% Similarity=0.510 Sum_probs=17.5
Q ss_pred HHHHHHhccccccccCceEEEEee
Q 024268 195 DFSLFLKSRSQEMVPNGRLVLVFN 218 (270)
Q Consensus 195 Dl~~FL~~Ra~EL~~GG~lvl~~~ 218 (270)
+...|++.=.+=|+|||.+++++.
T Consensus 93 ~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 93 LYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCeEEEEEeC
Confidence 444566655677899999998764
No 147
>KOG3463 consensus Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=36.97 E-value=33 Score=27.83 Aligned_cols=21 Identities=14% Similarity=0.083 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHccCCCch
Q 024268 234 PWESLSEAIAAMVSEVRSNFQ 254 (270)
Q Consensus 234 ~~~~l~~~l~dmv~eGli~~e 254 (270)
+-..|.++|.||+++|.|+++
T Consensus 12 lG~~L~~tLDe~v~~g~itp~ 32 (109)
T KOG3463|consen 12 LGNALQKTLDELVSDGVITPS 32 (109)
T ss_pred HHHHHHHHHHHHHHcCCCCHH
Confidence 446899999999999999974
No 148
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=36.09 E-value=35 Score=30.87 Aligned_cols=20 Identities=20% Similarity=0.091 Sum_probs=15.3
Q ss_pred CceeEEeeecCCCCccchHH
Q 024268 51 NKVFNVADLGCASNASTFSV 70 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~ 70 (270)
.+--+|.|.|||.|.=|--+
T Consensus 68 ~p~~~VlD~G~APGsWsQVa 87 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVA 87 (232)
T ss_pred CCCCEEEEccCCCChHHHHH
Confidence 34689999999999765433
No 149
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=35.79 E-value=55 Score=30.50 Aligned_cols=71 Identities=13% Similarity=0.281 Sum_probs=43.9
Q ss_pred hHHhhCHHHHHHHHH--------hHHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCC
Q 024268 17 SYAQNSPFTQRVIEL--------SKPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSSVIENVQKKCVELNAP 88 (270)
Q Consensus 17 sY~~NS~~Q~~~i~~--------~~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~ 88 (270)
-|.+++..+...... -..+|.+..-++.... ...+.+|.++||..|...+.++ +. .+
T Consensus 30 ~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~--~~~~~~ilEvGCGvGNtvfPll-------~~------~~ 94 (264)
T KOG2361|consen 30 KYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD--EKSAETILEVGCGVGNTVFPLL-------KT------SP 94 (264)
T ss_pred hhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc--ccChhhheeeccCCCcccchhh-------hc------CC
Confidence 366666665544432 3667777777766443 1223499999999986655333 21 24
Q ss_pred CCceEEEecCCCCC
Q 024268 89 IPEFQLYLNDLPGN 102 (270)
Q Consensus 89 ~peiqv~~nDLP~N 102 (270)
.|.+.||..|-..|
T Consensus 95 n~~l~v~acDfsp~ 108 (264)
T KOG2361|consen 95 NNRLKVYACDFSPR 108 (264)
T ss_pred CCCeEEEEcCCChH
Confidence 45699999885443
No 150
>PRK14967 putative methyltransferase; Provisional
Probab=35.75 E-value=16 Score=32.17 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=17.1
Q ss_pred HHHHHHhccccccccCceEEEEeecC
Q 024268 195 DFSLFLKSRSQEMVPNGRLVLVFNGR 220 (270)
Q Consensus 195 Dl~~FL~~Ra~EL~~GG~lvl~~~gr 220 (270)
++..|++.=.+=|++||++++.....
T Consensus 137 ~~~~~l~~a~~~Lk~gG~l~~~~~~~ 162 (223)
T PRK14967 137 VLDRLCDAAPALLAPGGSLLLVQSEL 162 (223)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEecc
Confidence 34556654455689999998765443
No 151
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=35.19 E-value=37 Score=30.52 Aligned_cols=50 Identities=16% Similarity=0.080 Sum_probs=30.8
Q ss_pred ceeEEeeecCCCCccchHHHHH------------HHHHHHHHHhhcCCCCCceEEEecCCCCCchH
Q 024268 52 KVFNVADLGCASNASTFSVMSS------------VIENVQKKCVELNAPIPEFQLYLNDLPGNDFN 105 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v~~------------ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFn 105 (270)
+.-+|.|+||+.|.-|..+... .++.+++.+. ..+.+++...|.-.-++.
T Consensus 29 ~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~----~~~~v~v~~~D~~~~~~~ 90 (253)
T TIGR00755 29 EGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLS----LYERLEVIEGDALKVDLP 90 (253)
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhC----cCCcEEEEECchhcCChh
Confidence 3468999999999988866542 2333333321 134577777776554443
No 152
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=34.88 E-value=29 Score=32.16 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=20.5
Q ss_pred EEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCC
Q 024268 55 NVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDL 99 (270)
Q Consensus 55 ~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDL 99 (270)
+|.|+||.||.-++.+. +. .|...|+..|+
T Consensus 113 ~ilDlGTGSG~iai~la--------~~-------~~~~~V~a~Di 142 (280)
T COG2890 113 RILDLGTGSGAIAIALA--------KE-------GPDAEVIAVDI 142 (280)
T ss_pred cEEEecCChHHHHHHHH--------hh-------CcCCeEEEEEC
Confidence 89999999996655332 22 24467777775
No 153
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=34.79 E-value=27 Score=26.62 Aligned_cols=19 Identities=21% Similarity=0.148 Sum_probs=15.0
Q ss_pred eeEEeeecCCCCccchHHH
Q 024268 53 VFNVADLGCASNASTFSVM 71 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v 71 (270)
.-+|+|+||..|..+..+.
T Consensus 20 ~~~vldlG~G~G~~~~~l~ 38 (124)
T TIGR02469 20 GDVLWDIGAGSGSITIEAA 38 (124)
T ss_pred CCEEEEeCCCCCHHHHHHH
Confidence 3599999999998766443
No 154
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=34.41 E-value=94 Score=30.34 Aligned_cols=58 Identities=16% Similarity=0.337 Sum_probs=38.4
Q ss_pred cCCccccCC---c--CCCceeEEEcccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHhc
Q 024268 128 APGSFYGRL---F--PTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLKS 202 (270)
Q Consensus 128 vpgSFY~rL---f--P~~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~~ 202 (270)
++-+|+.+| + ++-+.|++-+=+|+|+- .. +.+ -...+|+.
T Consensus 178 ~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYa-----------Fe------------tee------------~ar~~l~N 222 (389)
T KOG1975|consen 178 AADCFKERLMDLLEFKDPRFDIVSCQFAFHYA-----------FE------------TEE------------SARIALRN 222 (389)
T ss_pred EeccchhHHHHhccCCCCCcceeeeeeeEeee-----------ec------------cHH------------HHHHHHHH
Confidence 455666543 3 55569999999999981 01 111 11245677
Q ss_pred cccccccCceEEEEeecC
Q 024268 203 RSQEMVPNGRLVLVFNGR 220 (270)
Q Consensus 203 Ra~EL~~GG~lvl~~~gr 220 (270)
=|+=|+|||.|+-+++-+
T Consensus 223 va~~LkpGG~FIgTiPds 240 (389)
T KOG1975|consen 223 VAKCLKPGGVFIGTIPDS 240 (389)
T ss_pred HHhhcCCCcEEEEecCcH
Confidence 788899999998887643
No 155
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=33.48 E-value=77 Score=22.13 Aligned_cols=40 Identities=15% Similarity=0.377 Sum_probs=28.0
Q ss_pred CccchHHHHHHHHHHHHHHhh-cCCCCCceEEEecCCCCCch
Q 024268 64 NASTFSVMSSVIENVQKKCVE-LNAPIPEFQLYLNDLPGNDF 104 (270)
Q Consensus 64 G~NSl~~v~~ii~~i~~~~~~-~~~~~peiqv~~nDLP~NDF 104 (270)
|+ |-.--..+++.|.+...+ .+.++..+.|+++|.|..+|
T Consensus 11 Gr-s~EqK~~L~~~it~a~~~~~~~p~~~v~V~i~ev~~~~~ 51 (60)
T PRK02289 11 GR-SQEQKNALAREVTEVVSRIAKAPKEAIHVFINDMPEGTY 51 (60)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHhCcCcceEEEEEEEeChhhe
Confidence 55 666666777777766543 45667789999999886554
No 156
>PF09597 IGR: IGR protein motif; InterPro: IPR019083 This entry is found in fungal and plant proteins and contains a conserved IGR motif. Its function is unknown.
Probab=33.21 E-value=34 Score=24.60 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHhccccccccCce
Q 024268 186 EAYLRQFEEDFSLFLKSRSQEMVPNGR 212 (270)
Q Consensus 186 ~ay~~Q~~~Dl~~FL~~Ra~EL~~GG~ 212 (270)
+.+++-|..||..++..++.+|+.-|.
T Consensus 13 ~~~~~kf~~~w~~lf~~~s~~LK~~GI 39 (57)
T PF09597_consen 13 EEHAEKFESDWEKLFTTSSKQLKELGI 39 (57)
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCCC
Confidence 566777888999999999999998775
No 157
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=32.98 E-value=46 Score=32.38 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=27.6
Q ss_pred HHhHHHHHHHHHHhhcccc---cCCceeEEeeecCCCCccchHHH
Q 024268 30 ELSKPVLESAVQSLFGEEV---IWNKVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 30 ~~~~p~le~ai~~~~~~~~---~~~~~~~IADlGCS~G~NSl~~v 71 (270)
+++.-.|++|+........ ....-.++.|+|||.|.-|-.++
T Consensus 186 SRs~lKLeEA~~~F~~~~~~~~~~~~g~~vlDLGAsPGGWT~~L~ 230 (357)
T PRK11760 186 SRSTLKLEEAFHVFIPRDEWDERLAPGMRAVDLGAAPGGWTYQLV 230 (357)
T ss_pred ChHHHHHHHHHHhcccchhhhcccCCCCEEEEeCCCCcHHHHHHH
Confidence 3444468888776543210 12356899999999999875444
No 158
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=32.90 E-value=46 Score=32.68 Aligned_cols=20 Identities=25% Similarity=0.189 Sum_probs=16.3
Q ss_pred eeEEeeecCCCCccchHHHH
Q 024268 53 VFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~ 72 (270)
.-+|+|+||.+|..++.+..
T Consensus 298 ~~~VLDlgcGtG~~sl~la~ 317 (443)
T PRK13168 298 GDRVLDLFCGLGNFTLPLAR 317 (443)
T ss_pred CCEEEEEeccCCHHHHHHHH
Confidence 35899999999998886553
No 159
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=32.32 E-value=57 Score=29.29 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHHH
Q 024268 33 KPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMSS 73 (270)
Q Consensus 33 ~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~~ 73 (270)
+..||++..++-.. .+--.+++||+||--|-.+.+.
T Consensus 29 lDaLekd~~eL~~~-----~~~i~lEIG~GSGvvstfL~~~ 64 (209)
T KOG3191|consen 29 LDALEKDAAELKGH-----NPEICLEIGCGSGVVSTFLASV 64 (209)
T ss_pred HHHHHHHHHHHhhc-----CceeEEEecCCcchHHHHHHHh
Confidence 45566666654422 2567899999999654444443
No 160
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=32.21 E-value=92 Score=28.35 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=14.8
Q ss_pred CceeEEeeecCCCCccchHH
Q 024268 51 NKVFNVADLGCASNASTFSV 70 (270)
Q Consensus 51 ~~~~~IADlGCS~G~NSl~~ 70 (270)
+++-+|.++||++|..+..+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~l 90 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREV 90 (270)
T ss_pred CCCCEEEEEcCCchHHHHHH
Confidence 34459999999999865433
No 161
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=31.49 E-value=48 Score=28.72 Aligned_cols=19 Identities=16% Similarity=0.027 Sum_probs=15.9
Q ss_pred eEEeeecCCCCccchHHHH
Q 024268 54 FNVADLGCASNASTFSVMS 72 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v~ 72 (270)
-++.|++|.+|.-++.+++
T Consensus 51 ~~vLDLfaGsG~lglea~s 69 (189)
T TIGR00095 51 AHLLDVFAGSGLLGEEALS 69 (189)
T ss_pred CEEEEecCCCcHHHHHHHh
Confidence 5799999999988876654
No 162
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=30.99 E-value=25 Score=33.63 Aligned_cols=46 Identities=22% Similarity=0.378 Sum_probs=29.5
Q ss_pred eeEEeeecCCCCccchHHHHHHHHHHHHHHhhcCCCCCceEEEecCCCCCchHHHHhcchhhh
Q 024268 53 VFNVADLGCASNASTFSVMSSVIENVQKKCVELNAPIPEFQLYLNDLPGNDFNTLFKGLSSFA 115 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~~ii~~i~~~~~~~~~~~peiqv~~nDLP~NDFntLF~~L~~~~ 115 (270)
--+|+|+||..|.-++... ++ | + =.|+--| |+=.|..=|+.+..+.
T Consensus 116 gk~VLDIGC~nGY~~frM~-------~~-----G---A-~~ViGiD-P~~lf~~QF~~i~~~l 161 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRML-------GR-----G---A-KSVIGID-PSPLFYLQFEAIKHFL 161 (315)
T ss_pred CCEEEEecCCCcHHHHHHh-------hc-----C---C-CEEEEEC-CChHHHHHHHHHHHHh
Confidence 4699999999998876433 21 1 2 2344555 6666777777776544
No 163
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=28.25 E-value=60 Score=30.89 Aligned_cols=20 Identities=10% Similarity=0.157 Sum_probs=16.6
Q ss_pred eeEEeeecCCCCccchHHHH
Q 024268 53 VFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v~ 72 (270)
.-+|.|+||++|.+++.+..
T Consensus 81 g~~VLDIG~GtG~~a~~LA~ 100 (322)
T PRK13943 81 GMRVLEIGGGTGYNAAVMSR 100 (322)
T ss_pred CCEEEEEeCCccHHHHHHHH
Confidence 46899999999999886653
No 164
>PHA02734 coat protein; Provisional
Probab=27.31 E-value=40 Score=28.19 Aligned_cols=38 Identities=18% Similarity=0.353 Sum_probs=27.6
Q ss_pred ccchHHHHHHHHHHHHHHhhc---CCCCCceEEEecCCCCC
Q 024268 65 ASTFSVMSSVIENVQKKCVEL---NAPIPEFQLYLNDLPGN 102 (270)
Q Consensus 65 ~NSl~~v~~ii~~i~~~~~~~---~~~~peiqv~~nDLP~N 102 (270)
.|+-.+|-.||++|++..+.+ |..-.|-.|||+..|.|
T Consensus 49 e~~k~aIHeiIK~IreA~kp~rn~g~gfkeawvyfsqvpen 89 (149)
T PHA02734 49 ANAKAAIHAIIKMIKDAMKPLRNKGKGFKEAWVYFSQVPEN 89 (149)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhcCCchhHHHHhhhcCccc
Confidence 456789999999999987643 23344667888877776
No 165
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=27.19 E-value=69 Score=29.63 Aligned_cols=36 Identities=22% Similarity=0.079 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhcccccCCceeEEeeecCCCCccchHHHH
Q 024268 33 KPVLESAVQSLFGEEVIWNKVFNVADLGCASNASTFSVMS 72 (270)
Q Consensus 33 ~p~le~ai~~~~~~~~~~~~~~~IADlGCS~G~NSl~~v~ 72 (270)
--.|++|++..-. ..+.-++.|+|+|+|.-|-.+++
T Consensus 64 ~~KL~~ale~F~l----~~k~kv~LDiGsSTGGFTd~lLq 99 (245)
T COG1189 64 GLKLEKALEEFEL----DVKGKVVLDIGSSTGGFTDVLLQ 99 (245)
T ss_pred HHHHHHHHHhcCc----CCCCCEEEEecCCCccHHHHHHH
Confidence 3447777775432 34668999999999998876554
No 166
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=27.09 E-value=1.9e+02 Score=19.39 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=30.9
Q ss_pred CCCCccchHHHHHHHHHHHHHHhh-cCCCCCceEEEecCCCCCch
Q 024268 61 CASNASTFSVMSSVIENVQKKCVE-LNAPIPEFQLYLNDLPGNDF 104 (270)
Q Consensus 61 CS~G~NSl~~v~~ii~~i~~~~~~-~~~~~peiqv~~nDLP~NDF 104 (270)
+..|+ +-.--.++.++|.+...+ .+.++..+.|.++|.|..||
T Consensus 7 ~~~gr-t~eqk~~l~~~i~~~l~~~~g~~~~~v~V~i~e~~~~~~ 50 (58)
T cd00491 7 ILEGR-TDEQKRELIERVTEAVSEILGAPEATIVVIIDEMPKENW 50 (58)
T ss_pred EcCCC-CHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCchhc
Confidence 34576 477777777777776543 55667789999999887776
No 167
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=25.91 E-value=71 Score=28.96 Aligned_cols=48 Identities=29% Similarity=0.612 Sum_probs=27.3
Q ss_pred cCCccccCCcCCCceeEEEcccccccccCCCCCcCCCCcCCCcCcceEEcCCCcHHHHHHHHHHHHHHHHHHHh
Q 024268 128 APGSFYGRLFPTNSLQLVHSSYGVHWLSKVPKLTDEAGLPLINKGKIFISKTSPVAVKEAYLRQFEEDFSLFLK 201 (270)
Q Consensus 128 vpgSFY~rLfP~~Svh~~~Ss~alHWLS~~P~v~~~~~l~~~nkg~i~i~~ss~~~v~~ay~~Q~~~Dl~~FL~ 201 (270)
-||-+|+.+||.+-| + .| ..|.. +-|-+...++ +-.+|..+|..+||.
T Consensus 133 ~~~~~~N~~fpg~~i------------a-MP-----~~L~~---~~v~y~dGt~-----at~~q~a~DVv~FL~ 180 (219)
T PF02167_consen 133 RPGGYYNPYFPGGAI------------A-MP-----PPLSD---GQVEYDDGTP-----ATVDQMAKDVVNFLA 180 (219)
T ss_dssp STTSEEETTSTTSEE------------S-S-------TSST---TSS-BTTTB--------HHHHHHHHHHHHH
T ss_pred CCCCccccccCCCcc------------c-ch-----hhhhh---hcccccCCCc-----chHHHHHHHHHHHHH
Confidence 689999999987543 2 24 23322 2232232232 335688899999997
No 168
>PLN03075 nicotianamine synthase; Provisional
Probab=25.61 E-value=46 Score=31.51 Aligned_cols=20 Identities=25% Similarity=0.087 Sum_probs=15.6
Q ss_pred ceeEEeeecCCCCccchHHH
Q 024268 52 KVFNVADLGCASNASTFSVM 71 (270)
Q Consensus 52 ~~~~IADlGCS~G~NSl~~v 71 (270)
.+-+|+|+||..||-|...+
T Consensus 123 ~p~~VldIGcGpgpltaiil 142 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVL 142 (296)
T ss_pred CCCEEEEECCCCcHHHHHHH
Confidence 56789999999998765443
No 169
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=25.16 E-value=1.3e+02 Score=20.65 Aligned_cols=46 Identities=15% Similarity=0.322 Sum_probs=28.3
Q ss_pred eecCCCCccchHHHHHHHHHHHHHHhh-cCCCCCceEEEecCCCCCch
Q 024268 58 DLGCASNASTFSVMSSVIENVQKKCVE-LNAPIPEFQLYLNDLPGNDF 104 (270)
Q Consensus 58 DlGCS~G~NSl~~v~~ii~~i~~~~~~-~~~~~peiqv~~nDLP~NDF 104 (270)
.+=|..|. |-.--..+++.|.+...+ +|.++..+.|++++.|..+|
T Consensus 4 ~i~~~~g~-~~e~K~~l~~~it~~~~~~lg~~~~~i~V~i~E~~~~~w 50 (60)
T PF01361_consen 4 TIKIPEGR-TAEQKRELAEAITDAVVEVLGIPPERISVVIEEVPPENW 50 (60)
T ss_dssp EEEEESTS--HHHHHHHHHHHHHHHHHHHTS-GGGEEEEEEEE-CCCE
T ss_pred EEEECCCC-CHHHHHHHHHHHHHHHHHHhCcCCCeEEEEEEEEChhhe
Confidence 33455677 665666666666665443 56666689999999887765
No 170
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=25.03 E-value=66 Score=31.26 Aligned_cols=19 Identities=21% Similarity=0.167 Sum_probs=16.1
Q ss_pred eeEEeeecCCCCccchHHH
Q 024268 53 VFNVADLGCASNASTFSVM 71 (270)
Q Consensus 53 ~~~IADlGCS~G~NSl~~v 71 (270)
.-+|+|+||.+|..++.+.
T Consensus 293 ~~~vLDl~cG~G~~sl~la 311 (431)
T TIGR00479 293 EELVVDAYCGVGTFTLPLA 311 (431)
T ss_pred CCEEEEcCCCcCHHHHHHH
Confidence 3689999999999988654
No 171
>TIGR02404 trehalos_R_Bsub trehalose operon repressor, B. subtilis-type. This family consists of repressors of the GntR family typically associated with trehalose utilization operons. Trehalose is imported as trehalose-6-phosphate and then hydrolyzed by alpha,alpha-phosphotrehalase to glucose and glucose-6-P. This family includes repressors mostly from Gram-positive lineages and does not include the TreR from E. coli.
Probab=24.68 E-value=54 Score=28.87 Aligned_cols=52 Identities=13% Similarity=0.074 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhccccccccCceEEEEeecCCCCCCCC---CCCCcchHHHHHHHHHHHHHccCCCchh
Q 024268 191 QFEEDFSLFLKSRSQEMVPNGRLVLVFNGRPSADFTR---DYCYPIPWESLSEAIAAMVSEVRSNFQS 255 (270)
Q Consensus 191 Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~~~~~~~---~~~~~~~~~~l~~~l~dmv~eGli~~ee 255 (270)
|.+.++..-+ ++.|++||.+| +++.... +.+ =..+.+|+++|++||+|....
T Consensus 4 qi~~~l~~~I--~~g~~~~G~~L-------PsE~eLa~~~gVS----R~TVR~Al~~L~~eGli~r~~ 58 (233)
T TIGR02404 4 QIYQDLEQKI--THGQYKEGDYL-------PSEHELMDQYGAS----RETVRKALNLLTEAGYIQKIQ 58 (233)
T ss_pred HHHHHHHHHH--HhCCCCCCCCC-------cCHHHHHHHHCCC----HHHHHHHHHHHHHCCCEEEeC
Confidence 4444544433 34688888876 4443222 222 257899999999999998765
No 172
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=24.62 E-value=37 Score=27.75 Aligned_cols=13 Identities=38% Similarity=0.767 Sum_probs=11.4
Q ss_pred ceeEEeeecCCCC
Q 024268 52 KVFNVADLGCASN 64 (270)
Q Consensus 52 ~~~~IADlGCS~G 64 (270)
+.....|+||..|
T Consensus 58 ~~~~FVDlGCGNG 70 (112)
T PF07757_consen 58 KFQGFVDLGCGNG 70 (112)
T ss_pred CCCceEEccCCch
Confidence 4678999999998
No 173
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=23.99 E-value=38 Score=31.55 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=17.3
Q ss_pred HHHHHHHhccccccccCceEEEEee
Q 024268 194 EDFSLFLKSRSQEMVPNGRLVLVFN 218 (270)
Q Consensus 194 ~Dl~~FL~~Ra~EL~~GG~lvl~~~ 218 (270)
-++..++-.=+.-|+|||.+.++.=
T Consensus 202 G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 202 GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred cchhhHHHHHHHhcCCCceEEEEec
Confidence 4666666677777778887776653
No 174
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=23.90 E-value=42 Score=27.44 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=20.8
Q ss_pred CcCCCceeEEE-------cc-cccccccCCCCCcCCCCcCC
Q 024268 136 LFPTNSLQLVH-------SS-YGVHWLSKVPKLTDEAGLPL 168 (270)
Q Consensus 136 LfP~~Svh~~~-------Ss-~alHWLS~~P~v~~~~~l~~ 168 (270)
++|.++|-+.+ |+ +.++|+.|.| ..++|
T Consensus 10 v~p~~sv~LsC~~sg~~~s~e~~~~wvRq~p-----g~lE~ 45 (115)
T cd05721 10 ASSNGAASLVCEYTYNGFSKEFRASLLKGAD-----SAVEV 45 (115)
T ss_pred EcCCCCEEEEEEecCCccccEEEEEEEEeCC-----CCcEE
Confidence 46777777655 44 8999999999 66665
No 175
>TIGR02018 his_ut_repres histidine utilization repressor, proteobacterial. This model represents a proteobacterial histidine utilization repressor. It is usually found clustered with the enzymes HutUHIG so that it can regulate its own expression as well. A number of species have several paralogs and may fine-tune the regulation according to levels of degradation intermediates such as urocanate. This family belongs to the larger GntR family of transcriptional regulators.
Probab=23.58 E-value=67 Score=28.22 Aligned_cols=52 Identities=15% Similarity=0.181 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhccccccccCceEEEEeecCCCCCCCC---CCCCcchHHHHHHHHHHHHHccCCCchh
Q 024268 191 QFEEDFSLFLKSRSQEMVPNGRLVLVFNGRPSADFTR---DYCYPIPWESLSEAIAAMVSEVRSNFQS 255 (270)
Q Consensus 191 Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~~~~~~~---~~~~~~~~~~l~~~l~dmv~eGli~~ee 255 (270)
|.++++..-+. +.|++||.+| +++.... +.+ -.-+.+||.+|++||+|....
T Consensus 5 qi~~~l~~~I~--~g~~~~g~~L-------PsE~eLa~~~~VS----R~TVR~Al~~L~~eGli~r~~ 59 (230)
T TIGR02018 5 RIKQDILERIR--SGEWPPGHRI-------PSEHELVAQYGCS----RMTVNRALRELTDAGLLERRQ 59 (230)
T ss_pred HHHHHHHHHHH--hCCCCCCCcC-------cCHHHHHHHHCCC----HHHHHHHHHHHHHCCCEEEec
Confidence 44445544333 4688898876 4433222 222 257889999999999998754
No 176
>PF10357 Kin17_mid: Domain of Kin17 curved DNA-binding protein; InterPro: IPR019447 This entry represents the conserved central 169 residue region of the Kin17 DNA/RNA-binding proteins. The N-terminal region of Kin17 contains a zinc-finger domain, while in the human and mouse proteins there is a RecA-like domain found in the C-terminal region. In humans, Kin17 protein forms intra-nuclear foci during cell proliferation and is re-distributed in the nucleoplasm during the cell cycle []. ; PDB: 2V1N_A.
Probab=23.47 E-value=71 Score=26.63 Aligned_cols=69 Identities=20% Similarity=0.259 Sum_probs=42.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHhccccccccCceEEEEeecC----CCCCCCC-CCCCcchHHHHHHHHHHHHHccCCCchh
Q 024268 181 PVAVKEAYLRQFEEDFSLFLKSRSQEMVPNGRLVLVFNGR----PSADFTR-DYCYPIPWESLSEAIAAMVSEVRSNFQS 255 (270)
Q Consensus 181 ~~~v~~ay~~Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr----~~~~~~~-~~~~~~~~~~l~~~l~dmv~eGli~~ee 255 (270)
|..+.+.|.+||++||...|+.|.-+=+. ....-. .+.+..- .+ . -|..|..=..-|-.+|++.-+|
T Consensus 10 ~~k~i~~yS~eFe~~Fl~lLr~~hg~krV-----~AN~vYnEyI~Dk~HvHMNa-T--~W~sLT~FvkyLgr~G~~~Vde 81 (127)
T PF10357_consen 10 PGKFIDEYSEEFEKDFLRLLRRRHGTKRV-----NANKVYNEYIQDKDHVHMNA-T--RWTSLTEFVKYLGREGKCKVDE 81 (127)
T ss_dssp GGG-HHHHHHHHHHHHHHHHHHHTSS-EE-----EHHHHHHHHTTSS----GGG-S--S-SSHHHHHHHHTTTTSEEEEE
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCCee-----chhHHHHHHhcCccceeecc-c--ccchHHHHHHHHhhCCeeEeec
Confidence 45678999999999999999998765332 211100 1111111 12 2 5777888888899999887776
Q ss_pred hc
Q 024268 256 FL 257 (270)
Q Consensus 256 ~~ 257 (270)
-.
T Consensus 82 te 83 (127)
T PF10357_consen 82 TE 83 (127)
T ss_dssp ET
T ss_pred CC
Confidence 54
No 177
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=23.36 E-value=78 Score=30.43 Aligned_cols=20 Identities=15% Similarity=0.167 Sum_probs=16.5
Q ss_pred eEEeeecCCCCccchHHHHH
Q 024268 54 FNVADLGCASNASTFSVMSS 73 (270)
Q Consensus 54 ~~IADlGCS~G~NSl~~v~~ 73 (270)
-+|+|+||.+|..++.+.+.
T Consensus 235 ~~vLDL~cG~G~~~l~la~~ 254 (374)
T TIGR02085 235 TQMWDLFCGVGGFGLHCAGP 254 (374)
T ss_pred CEEEEccCCccHHHHHHhhc
Confidence 48999999999988866643
No 178
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=23.29 E-value=1.2e+02 Score=27.65 Aligned_cols=17 Identities=18% Similarity=0.344 Sum_probs=13.1
Q ss_pred EEeeecCCCCccchHHH
Q 024268 55 NVADLGCASNASTFSVM 71 (270)
Q Consensus 55 ~IADlGCS~G~NSl~~v 71 (270)
+|||.||=||.-...++
T Consensus 19 ~iaDIGsDHAYLp~~Lv 35 (226)
T COG2384 19 RIADIGSDHAYLPIYLV 35 (226)
T ss_pred ceeeccCchhHhHHHHH
Confidence 39999999997665443
No 179
>TIGR02325 C_P_lyase_phnF phosphonates metabolism transcriptional regulator PhnF. All members of the seed alignment for this family are predicted helix-turn-helix transcriptional regulatory proteins of the broader gntR and are found associated with genes for the import and degradation of phosphonates and/or related compounds (e.g. phosphonites) with a direct C-P bond.
Probab=23.07 E-value=57 Score=28.56 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhccccccccCceEEEEeecCCCCCCCC---CCCCcchHHHHHHHHHHHHHccCCCchh
Q 024268 191 QFEEDFSLFLKSRSQEMVPNGRLVLVFNGRPSADFTR---DYCYPIPWESLSEAIAAMVSEVRSNFQS 255 (270)
Q Consensus 191 Q~~~Dl~~FL~~Ra~EL~~GG~lvl~~~gr~~~~~~~---~~~~~~~~~~l~~~l~dmv~eGli~~ee 255 (270)
|.++++..-+. +.|++||-+| +++.... +.+ =.-+.+||.+|++||+|....
T Consensus 12 ~i~~~l~~~I~--~g~~~~G~~L-------PsE~eLa~~~~VS----R~TvR~Al~~L~~eGli~r~~ 66 (238)
T TIGR02325 12 QIADKIEQEIA--AGHLRAGDYL-------PAEMQLAERFGVN----RHTVRRAIAALVERGLLRAEQ 66 (238)
T ss_pred HHHHHHHHHHH--cCCCCCCCcC-------cCHHHHHHHHCCC----HHHHHHHHHHHHHCCCEEEec
Confidence 44455544443 5688898876 4443222 222 247899999999999998754
No 180
>COG1942 Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only]
Probab=22.80 E-value=2.6e+02 Score=20.70 Aligned_cols=45 Identities=9% Similarity=0.155 Sum_probs=28.9
Q ss_pred cCCCCccchHHHHHHHHHHHHHHh-hcCCCCCceEEEecCCCCCch
Q 024268 60 GCASNASTFSVMSSVIENVQKKCV-ELNAPIPEFQLYLNDLPGNDF 104 (270)
Q Consensus 60 GCS~G~NSl~~v~~ii~~i~~~~~-~~~~~~peiqv~~nDLP~NDF 104 (270)
=|..|..+-..=.++++.|.+... -+|.++..+.|+++|.|-.|+
T Consensus 7 k~~~g~~~~~~K~~la~~vT~~~~~~lg~~~~~i~Viieev~~~~w 52 (69)
T COG1942 7 KLFEGRLDEEQKAELAAEVTEVTVETLGKDPSAIHVIIEEVPPENW 52 (69)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEecChhhe
Confidence 344576666544445555544432 256677789999999887765
No 181
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.81 E-value=1.4e+02 Score=20.45 Aligned_cols=44 Identities=14% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCCCccchHHHHHHHHHHHHHHh-hcCCCCCceEEEecCCCCCchH
Q 024268 61 CASNASTFSVMSSVIENVQKKCV-ELNAPIPEFQLYLNDLPGNDFN 105 (270)
Q Consensus 61 CS~G~NSl~~v~~ii~~i~~~~~-~~~~~~peiqv~~nDLP~NDFn 105 (270)
|..|+ |-..-..+++.|.+... ..+.++..+.|.+++.|..||.
T Consensus 8 ~~~gr-s~eqk~~l~~~it~~l~~~~~~p~~~v~V~i~e~~~~~w~ 52 (62)
T PRK00745 8 LFEGR-TVEQKRKLVEEITRVTVETLGCPPESVDIIITDVKRENWA 52 (62)
T ss_pred EcCCC-CHHHHHHHHHHHHHHHHHHcCCChhHEEEEEEEcChHHee
Confidence 45576 67677777777776543 3555666789999988877664
No 182
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=21.58 E-value=45 Score=26.53 Aligned_cols=17 Identities=18% Similarity=0.286 Sum_probs=13.3
Q ss_pred EEeeecCCCCccchHHH
Q 024268 55 NVADLGCASNASTFSVM 71 (270)
Q Consensus 55 ~IADlGCS~G~NSl~~v 71 (270)
+|.|+||..|.-++.+.
T Consensus 1 ~vlDiGa~~G~~~~~~~ 17 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFA 17 (143)
T ss_pred CEEEccCCccHHHHHHH
Confidence 48999999998766443
No 183
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=21.29 E-value=88 Score=25.23 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=18.6
Q ss_pred hHHHHHHHHHHHHHccCCCchh
Q 024268 234 PWESLSEAIAAMVSEVRSNFQS 255 (270)
Q Consensus 234 ~~~~l~~~l~dmv~eGli~~ee 255 (270)
+-..|.+|+.+++.+|.|+..-
T Consensus 13 ig~~L~dalD~lis~g~isp~l 34 (113)
T COG5123 13 IGKVLEDALDELISAGVISPNL 34 (113)
T ss_pred HHHHHHHHHHHHHhcCCcCHHH
Confidence 3467999999999999999753
No 184
>PF08714 Fae: Formaldehyde-activating enzyme (Fae); InterPro: IPR014826 This family consists of formaldehyde-activating enzyme, or the corresponding domain of longer, bifunctional proteins. It links formaldehyde to the C1 carrier tetrahydromethanopterin (H4MPT), an analog of tetrahydrofolate, and is common among species with H4MPT []. The ribulose monophosphate (RuMP) pathway, which removes the toxic metabolite formaldehyde by assimilation, runs in the opposite direction in some species to produce ribulose 5-phosphate for nucleotide biosynthesis, leaving formaldehyde as an additional metabolite. In these species, formaldehyde activating enzyme may occur as a fusion protein with D-arabino 3-hexulose 6-phosphate formaldehyde lyase from the RuMP pathway.; GO: 0016840 carbon-nitrogen lyase activity, 0016051 carbohydrate biosynthetic process; PDB: 1Y60_A 1Y5Y_D.
Probab=20.07 E-value=1.1e+02 Score=26.42 Aligned_cols=31 Identities=13% Similarity=-0.008 Sum_probs=23.9
Q ss_pred CcchHHHHHHHHHHHHHccCCCchhhccccc
Q 024268 231 YPIPWESLSEAIAAMVSEVRSNFQSFLSSLK 261 (270)
Q Consensus 231 ~~~~~~~l~~~l~dmv~eGli~~ee~~~~~~ 261 (270)
+++.--.+.++..|.|.||+|.+|+.++...
T Consensus 76 fGpaQaavA~AVaD~V~eG~iP~~~a~dl~I 106 (159)
T PF08714_consen 76 FGPAQAAVAKAVADAVEEGIIPKDEADDLVI 106 (159)
T ss_dssp CTHHHHHHHHHHHHHHHTTSS-TTTGGGEEE
T ss_pred cCHHHHHHHHHHHHHHHcCCCChhhcCcEEE
Confidence 3344567899999999999999999986543
Done!