Query 024269
Match_columns 270
No_of_seqs 289 out of 2577
Neff 10.4
Searched_HMMs 46136
Date Fri Mar 29 03:20:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.5E-32 3.3E-37 227.3 20.3 163 4-203 105-274 (346)
2 KOG0105 Alternative splicing f 100.0 2.8E-31 6.2E-36 191.1 21.5 192 1-204 1-192 (241)
3 TIGR01645 half-pint poly-U bin 100.0 2.5E-30 5.5E-35 224.8 20.7 173 4-204 105-284 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.2E-29 2.6E-34 214.5 20.1 163 4-203 1-170 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 2.6E-29 5.7E-34 219.3 20.6 171 4-202 87-264 (457)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 4E-28 8.7E-33 205.2 24.0 197 5-205 88-350 (352)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.6E-28 1E-32 211.3 21.5 170 5-202 1-172 (481)
8 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.6E-27 3.4E-32 208.0 24.0 193 4-202 273-478 (481)
9 TIGR01648 hnRNP-R-Q heterogene 100.0 3.6E-27 7.8E-32 204.9 23.6 192 5-204 57-307 (578)
10 KOG0148 Apoptosis-promoting RN 100.0 5.3E-28 1.1E-32 184.2 14.8 171 7-202 63-236 (321)
11 TIGR01628 PABP-1234 polyadenyl 100.0 2E-27 4.3E-32 212.2 19.7 158 8-202 2-165 (562)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 1.7E-26 3.6E-31 204.4 22.0 185 4-202 173-373 (509)
13 TIGR01628 PABP-1234 polyadenyl 99.9 7.2E-27 1.6E-31 208.6 18.0 179 5-204 177-364 (562)
14 KOG0145 RNA-binding protein EL 99.9 7.1E-27 1.5E-31 177.2 14.6 164 4-204 39-209 (360)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.9 4.5E-26 9.9E-31 201.6 21.5 188 4-202 293-500 (509)
16 KOG0131 Splicing factor 3b, su 99.9 1.1E-26 2.3E-31 167.3 12.4 164 4-205 7-178 (203)
17 KOG0144 RNA-binding protein CU 99.9 9.1E-27 2E-31 188.1 12.7 170 5-209 33-211 (510)
18 TIGR01622 SF-CC1 splicing fact 99.9 2.7E-25 5.9E-30 194.1 22.6 193 6-202 186-446 (457)
19 KOG0109 RNA-binding protein LA 99.9 1E-26 2.2E-31 178.9 11.5 146 7-202 3-148 (346)
20 KOG0127 Nucleolar protein fibr 99.9 3.1E-25 6.7E-30 184.1 16.1 184 7-203 6-195 (678)
21 KOG0117 Heterogeneous nuclear 99.9 2.5E-25 5.4E-30 180.6 15.1 162 4-203 162-330 (506)
22 KOG0117 Heterogeneous nuclear 99.9 3.1E-24 6.8E-29 174.2 17.2 156 5-203 82-247 (506)
23 KOG0106 Alternative splicing f 99.9 1.5E-24 3.3E-29 164.0 12.4 163 7-198 2-165 (216)
24 KOG0145 RNA-binding protein EL 99.9 5.6E-24 1.2E-28 161.5 14.8 193 6-202 127-356 (360)
25 KOG0127 Nucleolar protein fibr 99.9 3E-23 6.6E-28 172.4 19.4 193 6-202 117-376 (678)
26 KOG4206 Spliceosomal protein s 99.9 9.8E-22 2.1E-26 147.3 19.1 187 1-188 4-209 (221)
27 KOG0124 Polypyrimidine tract-b 99.9 7.3E-23 1.6E-27 162.5 12.1 170 7-204 114-290 (544)
28 KOG0123 Polyadenylate-binding 99.9 1.5E-21 3.4E-26 162.7 16.8 151 7-205 2-154 (369)
29 KOG0110 RNA-binding protein (R 99.9 4.7E-22 1E-26 170.2 13.4 165 9-203 518-692 (725)
30 KOG0107 Alternative splicing f 99.9 1.8E-21 3.9E-26 139.6 13.6 78 124-206 10-87 (195)
31 KOG0107 Alternative splicing f 99.9 1.3E-20 2.8E-25 135.1 17.0 78 4-83 8-85 (195)
32 TIGR01645 half-pint poly-U bin 99.9 2E-19 4.4E-24 157.1 22.4 79 5-83 203-284 (612)
33 PLN03134 glycine-rich RNA-bind 99.9 4.3E-20 9.3E-25 134.7 14.7 80 4-83 32-114 (144)
34 KOG0123 Polyadenylate-binding 99.8 2.7E-20 5.8E-25 155.3 14.9 168 4-203 74-245 (369)
35 KOG0144 RNA-binding protein CU 99.8 1.5E-20 3.3E-25 152.4 12.3 80 5-84 123-207 (510)
36 KOG1457 RNA binding protein (c 99.8 2.4E-19 5.3E-24 133.5 16.0 183 6-188 34-274 (284)
37 KOG0147 Transcriptional coacti 99.8 9E-20 1.9E-24 152.3 13.6 188 9-201 281-525 (549)
38 KOG4207 Predicted splicing fac 99.8 8.3E-20 1.8E-24 134.4 11.4 79 5-83 12-93 (256)
39 KOG0148 Apoptosis-promoting RN 99.8 5.4E-20 1.2E-24 140.7 10.8 139 1-205 1-143 (321)
40 KOG0146 RNA-binding protein ET 99.8 3.8E-19 8.2E-24 135.9 14.8 193 5-201 18-362 (371)
41 KOG0147 Transcriptional coacti 99.8 1.4E-20 3E-25 157.1 5.3 172 4-201 177-355 (549)
42 KOG4205 RNA-binding protein mu 99.8 2.5E-19 5.4E-24 144.5 11.1 167 1-202 1-174 (311)
43 KOG1190 Polypyrimidine tract-b 99.8 4.1E-18 9E-23 137.4 17.7 192 6-202 297-489 (492)
44 KOG1548 Transcription elongati 99.8 4.2E-18 9.1E-23 134.7 15.9 191 4-205 132-353 (382)
45 KOG4676 Splicing factor, argin 99.8 1.3E-19 2.8E-24 145.2 5.8 181 4-187 5-213 (479)
46 KOG0113 U1 small nuclear ribon 99.8 2.6E-17 5.6E-22 127.8 16.2 81 3-83 98-181 (335)
47 KOG0121 Nuclear cap-binding pr 99.8 9.6E-19 2.1E-23 119.0 6.9 80 4-83 34-116 (153)
48 KOG4207 Predicted splicing fac 99.8 7.4E-18 1.6E-22 124.2 11.9 79 120-202 9-91 (256)
49 KOG4212 RNA-binding protein hn 99.8 6.3E-17 1.4E-21 131.8 17.7 184 5-188 43-282 (608)
50 KOG4211 Splicing factor hnRNP- 99.7 8.3E-17 1.8E-21 133.1 16.0 168 4-202 8-180 (510)
51 PF00076 RRM_1: RNA recognitio 99.7 8E-18 1.7E-22 108.2 7.6 68 9-76 1-70 (70)
52 PLN03120 nucleic acid binding 99.7 2E-17 4.3E-22 128.9 10.9 78 5-83 3-80 (260)
53 KOG0114 Predicted RNA-binding 99.7 4.3E-17 9.2E-22 106.8 9.1 80 4-83 16-95 (124)
54 TIGR01648 hnRNP-R-Q heterogene 99.7 7.5E-17 1.6E-21 140.9 13.1 136 5-152 232-369 (578)
55 TIGR01659 sex-lethal sex-letha 99.7 1.8E-16 4E-21 131.7 14.7 80 5-84 192-276 (346)
56 KOG0110 RNA-binding protein (R 99.7 2.2E-16 4.7E-21 135.8 14.7 192 4-202 383-596 (725)
57 PLN03121 nucleic acid binding 99.7 1.3E-16 2.8E-21 122.3 11.7 80 4-84 3-82 (243)
58 KOG0122 Translation initiation 99.7 2.1E-16 4.5E-21 119.6 9.3 80 4-83 187-269 (270)
59 KOG0126 Predicted RNA-binding 99.7 4.6E-18 9.9E-23 122.8 0.3 81 4-84 33-116 (219)
60 PF14259 RRM_6: RNA recognitio 99.7 3.4E-16 7.4E-21 100.5 7.6 68 9-76 1-70 (70)
61 KOG0415 Predicted peptidyl pro 99.6 2.7E-16 5.8E-21 124.9 5.3 81 4-84 237-320 (479)
62 KOG0120 Splicing factor U2AF, 99.6 1.9E-15 4.1E-20 128.1 9.1 183 5-202 288-490 (500)
63 KOG0125 Ataxin 2-binding prote 99.6 1.6E-15 3.5E-20 119.4 8.1 80 4-83 94-174 (376)
64 COG0724 RNA-binding proteins ( 99.6 1.7E-14 3.7E-19 118.1 14.5 145 6-162 115-263 (306)
65 smart00362 RRM_2 RNA recogniti 99.6 6.9E-15 1.5E-19 94.6 9.3 71 8-78 1-72 (72)
66 PLN03134 glycine-rich RNA-bind 99.6 2.9E-14 6.3E-19 104.0 13.5 84 118-205 28-115 (144)
67 KOG0130 RNA-binding protein RB 99.6 2E-15 4.4E-20 103.8 6.4 78 6-83 72-152 (170)
68 KOG0149 Predicted RNA-binding 99.6 2.6E-15 5.7E-20 113.2 7.3 76 6-82 12-90 (247)
69 PLN03213 repressor of silencin 99.6 7.8E-15 1.7E-19 121.6 9.5 78 4-82 8-87 (759)
70 KOG1190 Polypyrimidine tract-b 99.6 5E-13 1.1E-17 108.4 16.9 190 8-203 152-372 (492)
71 KOG1456 Heterogeneous nuclear 99.5 2.2E-12 4.7E-17 103.6 19.8 192 4-202 118-361 (494)
72 KOG0113 U1 small nuclear ribon 99.5 1.6E-13 3.5E-18 107.0 12.9 77 122-202 99-179 (335)
73 KOG1456 Heterogeneous nuclear 99.5 1.4E-12 3.1E-17 104.7 18.3 193 4-199 285-484 (494)
74 PF13893 RRM_5: RNA recognitio 99.5 6.9E-14 1.5E-18 85.4 8.1 56 23-80 1-56 (56)
75 cd00590 RRM RRM (RNA recogniti 99.5 1.1E-13 2.5E-18 89.3 9.6 72 8-79 1-74 (74)
76 KOG0111 Cyclophilin-type pepti 99.5 1.5E-14 3.2E-19 107.9 5.6 83 4-86 8-93 (298)
77 smart00360 RRM RNA recognition 99.5 7.1E-14 1.5E-18 89.5 8.2 68 11-78 1-71 (71)
78 KOG0124 Polypyrimidine tract-b 99.5 2.3E-12 5E-17 103.2 17.2 77 7-83 211-290 (544)
79 KOG0108 mRNA cleavage and poly 99.5 8.7E-14 1.9E-18 117.4 9.1 79 7-85 19-100 (435)
80 KOG1365 RNA-binding protein Fu 99.5 6.4E-14 1.4E-18 112.6 5.8 189 5-202 160-360 (508)
81 KOG4212 RNA-binding protein hn 99.5 8.3E-12 1.8E-16 102.3 17.3 74 122-200 534-607 (608)
82 PF00076 RRM_1: RNA recognitio 99.5 4.2E-13 9.1E-18 86.0 7.8 67 127-197 1-70 (70)
83 KOG0130 RNA-binding protein RB 99.4 7.9E-13 1.7E-17 91.2 7.9 81 118-202 66-150 (170)
84 KOG0109 RNA-binding protein LA 99.4 3.1E-13 6.7E-18 105.0 6.4 92 4-100 76-167 (346)
85 KOG0125 Ataxin 2-binding prote 99.4 1.2E-12 2.6E-17 103.4 9.3 79 120-202 92-172 (376)
86 KOG0105 Alternative splicing f 99.4 2.7E-12 5.9E-17 93.4 10.4 80 123-206 5-85 (241)
87 smart00361 RRM_1 RNA recogniti 99.4 1.7E-12 3.6E-17 83.0 7.6 58 20-77 2-69 (70)
88 PLN03120 nucleic acid binding 99.4 3E-12 6.4E-17 100.1 9.6 75 124-203 4-79 (260)
89 KOG0120 Splicing factor U2AF, 99.4 4.3E-12 9.3E-17 107.9 10.4 179 4-202 173-367 (500)
90 KOG0121 Nuclear cap-binding pr 99.3 5E-12 1.1E-16 86.5 7.4 77 122-202 34-114 (153)
91 KOG0112 Large RNA-binding prot 99.3 1.7E-12 3.7E-17 114.8 5.3 158 4-202 370-529 (975)
92 KOG0129 Predicted RNA-binding 99.3 8.7E-11 1.9E-15 98.5 15.1 166 4-188 257-443 (520)
93 KOG4454 RNA binding protein (R 99.3 2.1E-12 4.6E-17 96.5 4.9 140 4-188 7-151 (267)
94 KOG0132 RNA polymerase II C-te 99.3 6.7E-12 1.5E-16 109.5 8.4 77 5-84 420-496 (894)
95 KOG0114 Predicted RNA-binding 99.3 2.3E-11 5E-16 80.1 8.8 80 119-202 13-93 (124)
96 PF14259 RRM_6: RNA recognitio 99.3 1.1E-11 2.3E-16 79.4 7.1 66 127-196 1-69 (70)
97 PLN03121 nucleic acid binding 99.3 2.6E-11 5.6E-16 93.4 9.6 75 123-202 4-79 (243)
98 KOG0146 RNA-binding protein ET 99.3 4.8E-12 1E-16 97.4 5.0 81 3-83 282-365 (371)
99 PLN03213 repressor of silencin 99.3 2.7E-11 5.9E-16 100.9 9.7 76 123-202 9-86 (759)
100 KOG0122 Translation initiation 99.3 1.2E-10 2.5E-15 88.8 12.2 81 119-203 184-268 (270)
101 smart00362 RRM_2 RNA recogniti 99.2 8.2E-11 1.8E-15 75.3 8.7 69 126-198 1-71 (72)
102 KOG4208 Nucleolar RNA-binding 99.2 4.9E-11 1.1E-15 88.7 7.9 79 5-83 48-130 (214)
103 KOG0533 RRM motif-containing p 99.2 6.2E-10 1.3E-14 86.9 14.1 79 6-84 83-163 (243)
104 KOG0131 Splicing factor 3b, su 99.2 5.6E-11 1.2E-15 86.5 6.6 80 4-83 94-177 (203)
105 KOG4211 Splicing factor hnRNP- 99.2 4.3E-10 9.3E-15 93.8 12.0 175 5-181 102-340 (510)
106 KOG0116 RasGAP SH3 binding pro 99.2 5.6E-10 1.2E-14 94.0 12.1 78 5-83 287-367 (419)
107 cd00590 RRM RRM (RNA recogniti 99.1 7.6E-10 1.7E-14 71.1 9.1 70 126-199 1-73 (74)
108 smart00360 RRM RNA recognition 99.1 5.5E-10 1.2E-14 71.1 8.2 66 129-198 1-70 (71)
109 KOG0153 Predicted RNA-binding 99.1 4.6E-10 1E-14 89.7 8.8 77 4-83 226-303 (377)
110 PF13893 RRM_5: RNA recognitio 99.1 4.2E-10 9.1E-15 68.5 6.2 56 141-201 1-56 (56)
111 KOG4661 Hsp27-ERE-TATA-binding 99.1 4.1E-10 8.8E-15 95.5 7.2 79 5-83 404-485 (940)
112 KOG4660 Protein Mei2, essentia 99.1 2.9E-10 6.2E-15 96.3 6.2 71 4-76 73-143 (549)
113 KOG0415 Predicted peptidyl pro 99.0 1.2E-09 2.7E-14 87.5 9.1 79 120-202 235-317 (479)
114 KOG0126 Predicted RNA-binding 99.0 6.2E-11 1.3E-15 86.2 -0.7 75 124-202 35-113 (219)
115 KOG0149 Predicted RNA-binding 99.0 2.2E-09 4.8E-14 81.6 7.5 75 123-202 11-89 (247)
116 KOG0151 Predicted splicing reg 99.0 8.3E-09 1.8E-13 89.8 11.5 81 3-83 171-257 (877)
117 KOG0111 Cyclophilin-type pepti 98.9 1.1E-09 2.4E-14 82.1 4.6 79 123-205 9-91 (298)
118 KOG0128 RNA-binding protein SA 98.9 7.9E-11 1.7E-15 104.1 -2.0 132 5-188 666-803 (881)
119 PF04059 RRM_2: RNA recognitio 98.9 1.2E-08 2.6E-13 68.3 8.7 77 7-83 2-87 (97)
120 KOG0108 mRNA cleavage and poly 98.9 3.8E-09 8.2E-14 89.7 7.4 81 125-209 19-103 (435)
121 KOG2193 IGF-II mRNA-binding pr 98.9 1.4E-10 3.1E-15 94.8 -1.0 140 7-188 2-145 (584)
122 KOG4205 RNA-binding protein mu 98.9 4.2E-09 9E-14 85.6 6.7 83 6-89 97-182 (311)
123 COG0724 RNA-binding proteins ( 98.9 1.5E-08 3.3E-13 82.7 9.3 75 124-202 115-193 (306)
124 PF11608 Limkain-b1: Limkain b 98.9 2.6E-08 5.7E-13 63.4 8.0 70 7-83 3-77 (90)
125 KOG4210 Nuclear localization s 98.8 1.7E-08 3.8E-13 81.8 6.9 173 5-207 87-267 (285)
126 smart00361 RRM_1 RNA recogniti 98.8 4.1E-08 8.9E-13 62.5 7.3 57 138-198 2-69 (70)
127 KOG4209 Splicing factor RNPS1, 98.8 1.2E-08 2.5E-13 80.0 5.5 79 4-83 99-180 (231)
128 KOG4307 RNA binding protein RB 98.7 8.7E-08 1.9E-12 83.4 10.4 190 5-200 310-510 (944)
129 KOG4206 Spliceosomal protein s 98.7 1.3E-07 2.8E-12 71.8 8.3 75 125-203 10-89 (221)
130 KOG4661 Hsp27-ERE-TATA-binding 98.7 2.6E-07 5.6E-12 78.9 10.7 79 121-203 402-484 (940)
131 KOG0106 Alternative splicing f 98.7 9.5E-08 2E-12 73.2 7.2 70 125-202 2-71 (216)
132 KOG1365 RNA-binding protein Fu 98.6 7.4E-07 1.6E-11 72.6 11.5 158 4-181 58-225 (508)
133 KOG2202 U2 snRNP splicing fact 98.5 5.7E-08 1.2E-12 75.0 2.3 63 21-83 83-148 (260)
134 KOG0132 RNA polymerase II C-te 98.5 4E-07 8.6E-12 80.4 7.8 76 124-205 421-496 (894)
135 KOG1457 RNA binding protein (c 98.5 1E-06 2.3E-11 66.6 8.7 83 122-205 32-119 (284)
136 KOG0226 RNA-binding proteins [ 98.5 1.7E-07 3.7E-12 72.1 4.7 75 5-79 189-266 (290)
137 KOG1995 Conserved Zn-finger pr 98.4 2.3E-07 4.9E-12 75.1 4.5 81 4-84 64-155 (351)
138 KOG0153 Predicted RNA-binding 98.4 1.5E-06 3.2E-11 70.1 8.1 80 118-203 222-302 (377)
139 PF08777 RRM_3: RNA binding mo 98.4 8.5E-07 1.8E-11 60.9 5.9 71 7-80 2-77 (105)
140 KOG4676 Splicing factor, argin 98.4 7.9E-07 1.7E-11 72.6 6.4 58 126-183 9-73 (479)
141 KOG0533 RRM motif-containing p 98.4 1.6E-06 3.5E-11 68.0 7.7 75 124-202 83-160 (243)
142 KOG0226 RNA-binding proteins [ 98.3 8.9E-07 1.9E-11 68.3 5.4 143 24-199 117-265 (290)
143 KOG1548 Transcription elongati 98.3 3.6E-06 7.8E-11 67.8 8.4 77 122-202 132-219 (382)
144 PF04059 RRM_2: RNA recognitio 98.3 9E-06 2E-10 54.5 8.9 77 125-201 2-84 (97)
145 KOG0116 RasGAP SH3 binding pro 98.3 1.5E-05 3.3E-10 67.6 12.0 75 124-203 288-366 (419)
146 KOG4208 Nucleolar RNA-binding 98.2 5.7E-06 1.2E-10 62.1 7.4 79 118-200 43-126 (214)
147 KOG4660 Protein Mei2, essentia 98.2 2.3E-06 4.9E-11 73.1 5.9 67 121-188 72-138 (549)
148 KOG4454 RNA binding protein (R 98.2 1E-06 2.3E-11 66.5 3.3 68 121-188 6-75 (267)
149 KOG2416 Acinus (induces apopto 98.2 1.6E-06 3.6E-11 74.4 4.6 77 4-83 442-522 (718)
150 PF14605 Nup35_RRM_2: Nup53/35 98.2 6.3E-06 1.4E-10 49.0 5.4 53 6-62 1-53 (53)
151 PF11608 Limkain-b1: Limkain b 98.2 1.8E-05 4E-10 50.6 7.6 69 125-203 3-76 (90)
152 KOG4210 Nuclear localization s 98.1 3.6E-06 7.7E-11 68.4 5.0 80 3-83 181-264 (285)
153 KOG4307 RNA binding protein RB 98.1 1.3E-05 2.8E-10 70.4 8.2 76 4-79 864-943 (944)
154 COG5175 MOT2 Transcriptional r 98.1 1.3E-05 2.7E-10 64.6 7.0 76 6-81 114-201 (480)
155 PF05172 Nup35_RRM: Nup53/35/4 98.1 3E-05 6.5E-10 52.4 7.7 76 4-81 4-90 (100)
156 KOG3152 TBP-binding protein, a 98.0 2.7E-06 5.9E-11 65.8 2.5 70 5-74 73-157 (278)
157 KOG4209 Splicing factor RNPS1, 98.0 4.1E-05 8.8E-10 60.3 8.2 77 121-202 98-178 (231)
158 PF08777 RRM_3: RNA binding mo 97.9 1.7E-05 3.6E-10 54.5 4.8 59 125-185 2-60 (105)
159 KOG2314 Translation initiation 97.9 3.9E-05 8.6E-10 65.8 7.6 77 5-81 57-142 (698)
160 KOG0151 Predicted splicing reg 97.9 3.9E-05 8.5E-10 67.6 7.4 77 121-201 171-254 (877)
161 PF08952 DUF1866: Domain of un 97.9 9.4E-05 2E-09 53.0 7.9 74 4-83 25-107 (146)
162 KOG1855 Predicted RNA-binding 97.9 1.1E-05 2.3E-10 66.9 3.4 63 5-67 230-308 (484)
163 KOG2202 U2 snRNP splicing fact 97.9 2.2E-05 4.8E-10 61.0 4.7 60 139-202 83-146 (260)
164 KOG0128 RNA-binding protein SA 97.7 6.4E-05 1.4E-09 67.6 6.2 78 6-83 736-815 (881)
165 KOG0129 Predicted RNA-binding 97.7 0.00015 3.1E-09 61.9 8.0 60 4-63 368-431 (520)
166 KOG0112 Large RNA-binding prot 97.6 0.00025 5.4E-09 64.4 8.2 78 4-84 453-532 (975)
167 KOG0115 RNA-binding protein p5 97.6 0.00029 6.3E-09 54.8 7.3 102 57-200 6-110 (275)
168 KOG1996 mRNA splicing factor [ 97.6 0.00021 4.6E-09 56.6 6.4 62 20-81 300-365 (378)
169 KOG4849 mRNA cleavage factor I 97.6 7.7E-05 1.7E-09 60.4 3.9 76 6-81 80-160 (498)
170 KOG1995 Conserved Zn-finger pr 97.5 0.00046 9.9E-09 56.4 7.0 78 121-202 63-152 (351)
171 PF14605 Nup35_RRM_2: Nup53/35 97.4 0.00049 1.1E-08 40.8 4.8 52 125-179 2-53 (53)
172 PF08675 RNA_bind: RNA binding 97.4 0.0011 2.4E-08 42.6 6.4 55 6-66 9-63 (87)
173 COG5175 MOT2 Transcriptional r 97.1 0.0015 3.3E-08 52.9 6.5 77 122-202 112-201 (480)
174 KOG2314 Translation initiation 97.1 0.001 2.2E-08 57.6 5.6 67 123-189 57-132 (698)
175 KOG2253 U1 snRNP complex, subu 97.1 2.5E-05 5.5E-10 68.3 -4.3 72 4-81 38-109 (668)
176 PF07576 BRAP2: BRCA1-associat 97.1 0.0065 1.4E-07 41.9 8.3 68 5-72 12-81 (110)
177 KOG3152 TBP-binding protein, a 97.0 0.00047 1E-08 53.7 2.7 65 124-188 74-154 (278)
178 PF15023 DUF4523: Protein of u 97.0 0.0072 1.6E-07 43.0 8.0 74 4-82 84-161 (166)
179 KOG1855 Predicted RNA-binding 97.0 0.00093 2E-08 55.8 4.0 68 120-187 227-311 (484)
180 KOG0804 Cytoplasmic Zn-finger 96.9 0.01 2.2E-07 50.2 9.4 68 5-72 73-142 (493)
181 KOG0835 Cyclin L [General func 96.9 0.0016 3.5E-08 52.7 4.6 17 45-61 173-189 (367)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 96.8 0.00081 1.8E-08 50.8 2.4 79 4-82 5-97 (176)
183 PF10309 DUF2414: Protein of u 96.8 0.012 2.7E-07 35.8 6.8 53 7-65 6-62 (62)
184 KOG2416 Acinus (induces apopto 96.7 0.00092 2E-08 58.1 2.4 80 120-202 440-520 (718)
185 KOG1996 mRNA splicing factor [ 96.7 0.006 1.3E-07 48.6 6.6 61 138-202 300-365 (378)
186 PF03880 DbpA: DbpA RNA bindin 96.6 0.019 4.1E-07 36.7 7.3 58 17-80 12-74 (74)
187 KOG2591 c-Mpl binding protein, 96.6 0.0036 7.8E-08 54.1 4.9 70 4-77 173-246 (684)
188 KOG2068 MOT2 transcription fac 96.5 0.0011 2.3E-08 54.0 1.4 77 7-83 78-163 (327)
189 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.0087 1.9E-07 40.5 5.6 63 124-188 6-79 (100)
190 PF04847 Calcipressin: Calcipr 96.5 0.011 2.5E-07 44.8 6.8 63 18-83 7-71 (184)
191 PF10309 DUF2414: Protein of u 96.5 0.029 6.4E-07 34.2 7.2 54 125-182 6-62 (62)
192 KOG0115 RNA-binding protein p5 96.5 0.0033 7.1E-08 49.2 3.8 75 7-81 32-112 (275)
193 KOG4285 Mitotic phosphoprotein 96.3 0.018 3.8E-07 46.3 7.0 73 6-83 197-270 (350)
194 KOG2135 Proteins containing th 96.0 0.0042 9.2E-08 52.7 2.2 76 4-83 370-446 (526)
195 KOG2591 c-Mpl binding protein, 96.0 0.039 8.5E-07 48.0 7.9 55 125-182 176-232 (684)
196 KOG2193 IGF-II mRNA-binding pr 95.7 0.0013 2.7E-08 55.0 -1.8 79 5-83 79-157 (584)
197 PF06495 Transformer: Fruit fl 95.7 0.0098 2.1E-07 43.6 2.8 7 258-264 101-107 (182)
198 PF08952 DUF1866: Domain of un 95.7 0.054 1.2E-06 39.1 6.4 53 140-201 52-104 (146)
199 KOG0835 Cyclin L [General func 95.7 0.023 5E-07 46.3 4.9 12 135-146 212-223 (367)
200 PF07576 BRAP2: BRCA1-associat 95.1 0.3 6.4E-06 33.8 8.5 64 125-188 14-80 (110)
201 KOG4574 RNA-binding protein (c 94.8 0.02 4.4E-07 52.2 2.6 73 9-84 301-375 (1007)
202 PF08675 RNA_bind: RNA binding 94.6 0.12 2.7E-06 33.3 5.0 54 126-184 11-64 (87)
203 KOG2135 Proteins containing th 93.8 0.15 3.3E-06 43.7 5.4 71 125-202 373-444 (526)
204 KOG0804 Cytoplasmic Zn-finger 93.7 0.39 8.5E-06 41.0 7.6 65 124-188 74-141 (493)
205 KOG2318 Uncharacterized conser 93.5 0.37 7.9E-06 42.5 7.3 79 3-81 171-306 (650)
206 PF07292 NID: Nmi/IFP 35 domai 93.4 0.42 9.2E-06 31.5 6.0 70 48-144 1-72 (88)
207 KOG4849 mRNA cleavage factor I 92.4 0.26 5.7E-06 40.6 4.8 67 122-188 78-150 (498)
208 PF03467 Smg4_UPF3: Smg-4/UPF3 92.1 0.17 3.7E-06 38.3 3.2 80 123-202 6-96 (176)
209 PF11767 SET_assoc: Histone ly 92.1 1.1 2.5E-05 27.7 6.3 55 17-77 11-65 (66)
210 KOG2253 U1 snRNP complex, subu 91.1 0.5 1.1E-05 42.4 5.4 66 118-188 34-99 (668)
211 PF14111 DUF4283: Domain of un 90.9 0.22 4.8E-06 36.6 2.8 120 9-160 18-141 (153)
212 PF04847 Calcipressin: Calcipr 90.7 1.1 2.5E-05 34.1 6.4 60 137-202 8-69 (184)
213 KOG0796 Spliceosome subunit [R 90.4 0.15 3.2E-06 41.7 1.5 7 143-149 187-193 (319)
214 KOG2888 Putative RNA binding p 90.0 0.15 3.3E-06 41.6 1.2 8 75-82 163-170 (453)
215 KOG4285 Mitotic phosphoprotein 89.4 2.5 5.5E-05 34.4 7.6 61 124-188 197-257 (350)
216 PF15023 DUF4523: Protein of u 87.5 1.7 3.6E-05 31.4 4.9 62 122-186 84-149 (166)
217 PF10567 Nab6_mRNP_bdg: RNA-re 87.2 1.4 3.1E-05 35.6 5.0 169 5-184 14-213 (309)
218 KOG4019 Calcineurin-mediated s 87.0 0.64 1.4E-05 34.8 2.7 75 6-83 10-90 (193)
219 KOG4574 RNA-binding protein (c 86.8 0.54 1.2E-05 43.4 2.7 71 129-203 303-373 (1007)
220 KOG2891 Surface glycoprotein [ 86.5 0.31 6.7E-06 38.9 1.0 67 4-70 147-247 (445)
221 KOG2888 Putative RNA binding p 86.4 0.34 7.3E-06 39.7 1.1 9 21-29 172-180 (453)
222 KOG2068 MOT2 transcription fac 86.2 0.32 6.8E-06 40.0 0.9 66 123-188 76-151 (327)
223 PF03880 DbpA: DbpA RNA bindin 85.2 5.4 0.00012 25.3 6.1 59 134-201 11-74 (74)
224 KOG3580 Tight junction protein 84.8 8.9 0.00019 34.6 8.9 43 118-160 55-98 (1027)
225 PRK14548 50S ribosomal protein 84.4 4.8 0.0001 26.3 5.6 57 9-65 23-81 (84)
226 KOG4483 Uncharacterized conser 84.2 2.6 5.6E-05 35.7 5.2 58 4-64 389-446 (528)
227 TIGR03636 L23_arch archaeal ri 82.4 7.1 0.00015 25.0 5.7 55 9-63 16-72 (77)
228 PF11767 SET_assoc: Histone ly 81.3 9.8 0.00021 23.6 5.8 50 134-188 10-59 (66)
229 KOG4246 Predicted DNA-binding 80.7 0.7 1.5E-05 42.7 0.9 8 46-53 60-67 (1194)
230 PF03468 XS: XS domain; Inter 78.2 2.3 5E-05 29.8 2.6 56 8-63 10-75 (116)
231 PF14893 PNMA: PNMA 77.7 3 6.4E-05 35.0 3.6 55 1-55 13-72 (331)
232 KOG4410 5-formyltetrahydrofola 75.6 6.8 0.00015 31.7 4.8 46 7-55 331-377 (396)
233 PF15513 DUF4651: Domain of un 74.9 8.2 0.00018 23.5 4.0 20 20-39 8-27 (62)
234 KOG4483 Uncharacterized conser 74.5 9.2 0.0002 32.6 5.5 55 124-181 391-446 (528)
235 KOG2146 Splicing coactivator S 74.4 7.7 0.00017 31.4 4.8 16 50-65 57-72 (354)
236 KOG2295 C2H2 Zn-finger protein 74.4 0.35 7.6E-06 42.4 -2.7 70 5-74 230-302 (648)
237 PF09707 Cas_Cas2CT1978: CRISP 72.4 11 0.00024 24.7 4.5 49 4-52 23-71 (86)
238 KOG1295 Nonsense-mediated deca 71.6 3.9 8.5E-05 34.5 2.8 65 6-70 7-77 (376)
239 KOG4008 rRNA processing protei 67.1 4.7 0.0001 31.7 2.2 35 4-38 38-72 (261)
240 PRK14548 50S ribosomal protein 66.9 33 0.00071 22.4 6.6 56 127-182 23-81 (84)
241 cd04908 ACT_Bt0572_1 N-termina 66.6 27 0.00058 21.2 6.6 48 19-68 14-62 (66)
242 COG5638 Uncharacterized conser 66.4 23 0.00051 30.3 6.2 78 3-80 143-295 (622)
243 PTZ00191 60S ribosomal protein 64.3 28 0.0006 25.4 5.5 55 9-63 84-140 (145)
244 PF07292 NID: Nmi/IFP 35 domai 61.4 4.4 9.5E-05 26.8 1.0 24 5-28 51-74 (88)
245 KOG4213 RNA-binding protein La 60.1 14 0.00031 27.8 3.5 46 18-63 118-168 (205)
246 PRK11558 putative ssRNA endonu 59.6 21 0.00045 24.0 3.9 51 4-54 25-75 (97)
247 PF02829 3H: 3H domain; Inter 59.4 34 0.00073 23.1 5.0 52 16-67 7-58 (98)
248 TIGR03636 L23_arch archaeal ri 59.1 45 0.00098 21.4 6.7 57 126-182 15-74 (77)
249 cd04889 ACT_PDH-BS-like C-term 57.9 35 0.00076 19.7 5.7 43 20-62 12-55 (56)
250 PF02714 DUF221: Domain of unk 55.7 27 0.00058 29.2 5.1 34 48-83 1-34 (325)
251 KOG4410 5-formyltetrahydrofola 54.9 49 0.0011 27.0 5.9 50 122-173 328-378 (396)
252 PF03439 Spt5-NGN: Early trans 52.6 36 0.00078 22.1 4.2 28 41-68 40-67 (84)
253 PRK11634 ATP-dependent RNA hel 50.1 98 0.0021 28.8 8.1 101 17-118 498-600 (629)
254 TIGR01873 cas_CT1978 CRISPR-as 49.3 39 0.00085 22.2 3.9 51 4-54 23-74 (87)
255 KOG4365 Uncharacterized conser 47.5 2.9 6.4E-05 35.9 -1.9 75 6-81 3-80 (572)
256 KOG0156 Cytochrome P450 CYP2 s 47.1 45 0.00098 29.9 5.3 59 10-75 36-97 (489)
257 PF07530 PRE_C2HC: Associated 45.0 69 0.0015 19.9 4.4 60 21-83 2-65 (68)
258 PF00403 HMA: Heavy-metal-asso 44.7 66 0.0014 19.0 6.4 54 8-64 1-58 (62)
259 PF01071 GARS_A: Phosphoribosy 44.6 86 0.0019 24.2 5.8 60 18-78 24-86 (194)
260 PF11823 DUF3343: Protein of u 44.5 32 0.00069 21.6 3.0 29 46-74 2-30 (73)
261 PF11411 DNA_ligase_IV: DNA li 43.4 20 0.00044 19.2 1.5 17 16-32 19-35 (36)
262 KOG3580 Tight junction protein 43.4 74 0.0016 29.1 5.8 6 257-262 186-191 (1027)
263 PF08734 GYD: GYD domain; Int 41.7 1E+02 0.0022 20.4 5.8 47 138-184 22-69 (91)
264 KOG1295 Nonsense-mediated deca 40.6 30 0.00065 29.4 2.9 64 125-188 8-78 (376)
265 PF14111 DUF4283: Domain of un 39.9 33 0.00072 24.9 2.9 34 8-41 106-140 (153)
266 KOG4019 Calcineurin-mediated s 39.0 25 0.00055 26.6 2.1 73 125-202 11-88 (193)
267 PRK05738 rplW 50S ribosomal pr 39.0 1.2E+02 0.0025 20.2 5.1 30 9-38 22-53 (92)
268 KOG2295 C2H2 Zn-finger protein 38.6 7.8 0.00017 34.5 -0.7 67 122-188 229-299 (648)
269 KOG2812 Uncharacterized conser 38.4 38 0.00083 28.5 3.2 6 258-263 87-92 (426)
270 PF10567 Nab6_mRNP_bdg: RNA-re 36.4 1.1E+02 0.0025 25.2 5.4 54 124-177 15-79 (309)
271 smart00596 PRE_C2HC PRE_C2HC d 36.4 82 0.0018 19.7 3.7 59 21-82 2-64 (69)
272 PF02714 DUF221: Domain of unk 34.6 49 0.0011 27.6 3.5 22 165-186 1-22 (325)
273 COG0030 KsgA Dimethyladenosine 34.5 61 0.0013 26.3 3.7 29 7-35 96-124 (259)
274 KOG2318 Uncharacterized conser 34.0 2E+02 0.0043 26.3 6.9 69 120-188 170-294 (650)
275 KOG2187 tRNA uracil-5-methyltr 33.8 41 0.00089 30.1 2.8 40 44-83 62-101 (534)
276 COG0018 ArgS Arginyl-tRNA synt 33.5 3.9E+02 0.0085 24.7 9.0 99 19-160 59-166 (577)
277 PRK09631 DNA topoisomerase IV 33.0 3.8E+02 0.0083 25.1 8.9 59 6-65 220-282 (635)
278 COG3254 Uncharacterized conser 32.9 1.6E+02 0.0035 20.1 5.5 42 21-63 27-69 (105)
279 PF08442 ATP-grasp_2: ATP-gras 32.5 1.3E+02 0.0028 23.4 5.2 54 18-71 25-81 (202)
280 PF00276 Ribosomal_L23: Riboso 32.1 1.1E+02 0.0024 20.2 4.1 48 9-56 22-84 (91)
281 PTZ00191 60S ribosomal protein 31.3 2.1E+02 0.0046 20.9 6.6 57 126-182 83-142 (145)
282 PF09902 DUF2129: Uncharacteri 31.1 1.4E+02 0.003 18.8 4.4 39 26-70 16-54 (71)
283 COG5193 LHP1 La protein, small 30.5 25 0.00055 30.1 1.0 58 6-63 174-244 (438)
284 PRK11230 glycolate oxidase sub 30.2 1.7E+02 0.0036 26.4 6.2 59 8-66 191-255 (499)
285 PRK02886 hypothetical protein; 30.2 1.5E+02 0.0033 19.5 4.3 38 27-70 21-58 (87)
286 PRK02302 hypothetical protein; 30.1 1.5E+02 0.0033 19.6 4.3 38 27-70 23-60 (89)
287 CHL00123 rps6 ribosomal protei 30.1 1.7E+02 0.0038 19.6 5.3 54 8-63 10-80 (97)
288 PRK10629 EnvZ/OmpR regulon mod 29.3 2.1E+02 0.0046 20.3 7.9 72 5-81 34-109 (127)
289 KOG2891 Surface glycoprotein [ 29.1 67 0.0014 26.1 3.1 68 121-188 146-248 (445)
290 PF05036 SPOR: Sporulation rel 28.9 98 0.0021 18.9 3.5 60 124-183 4-65 (76)
291 PF12091 DUF3567: Protein of u 28.8 67 0.0015 21.0 2.5 17 134-150 60-76 (85)
292 PRK11901 hypothetical protein; 28.7 2.5E+02 0.0054 23.7 6.3 68 121-192 242-315 (327)
293 cd00027 BRCT Breast Cancer Sup 28.5 91 0.002 18.2 3.2 27 7-33 2-28 (72)
294 TIGR02542 B_forsyth_147 Bacter 28.2 2.1E+02 0.0046 20.0 5.5 23 14-38 11-33 (145)
295 PF15407 Spo7_2_N: Sporulation 28.2 20 0.00044 22.3 0.1 25 4-28 25-49 (67)
296 PF10915 DUF2709: Protein of u 27.8 2.8E+02 0.0062 21.3 6.0 33 50-83 47-79 (238)
297 PF06014 DUF910: Bacterial pro 27.5 55 0.0012 20.0 1.8 18 19-36 3-20 (62)
298 PHA01632 hypothetical protein 27.4 73 0.0016 18.8 2.3 21 9-29 19-39 (64)
299 COG0150 PurM Phosphoribosylami 26.9 23 0.0005 29.8 0.2 52 16-68 271-322 (345)
300 PF00398 RrnaAD: Ribosomal RNA 26.3 78 0.0017 25.6 3.2 28 6-33 97-126 (262)
301 PF15063 TC1: Thyroid cancer p 26.2 45 0.00099 21.2 1.4 24 10-33 29-52 (79)
302 PF11061 DUF2862: Protein of u 25.9 1.7E+02 0.0037 18.0 3.9 35 17-55 15-52 (64)
303 cd06405 PB1_Mekk2_3 The PB1 do 25.7 1.9E+02 0.004 18.5 7.7 62 12-79 14-76 (79)
304 cd04882 ACT_Bt0572_2 C-termina 25.5 1.5E+02 0.0032 17.3 5.2 43 21-63 14-58 (65)
305 cd04909 ACT_PDH-BS C-terminal 25.1 1.6E+02 0.0035 17.6 5.7 47 19-65 14-62 (69)
306 PF12829 Mhr1: Transcriptional 25.1 1.3E+02 0.0027 20.1 3.4 55 131-185 19-74 (91)
307 cd04879 ACT_3PGDH-like ACT_3PG 24.8 1.6E+02 0.0034 17.3 4.8 45 10-54 3-49 (71)
308 PF14026 DUF4242: Protein of u 24.4 2E+02 0.0043 18.3 7.8 62 8-70 2-71 (77)
309 PF08156 NOP5NT: NOP5NT (NUC12 24.2 24 0.00053 21.9 -0.1 38 21-65 27-64 (67)
310 PF01782 RimM: RimM N-terminal 24.2 1.5E+02 0.0031 19.0 3.6 23 45-68 54-76 (84)
311 COG5353 Uncharacterized protei 23.3 3.1E+02 0.0067 20.2 6.1 53 6-58 87-155 (161)
312 cd04883 ACT_AcuB C-terminal AC 23.2 1.8E+02 0.004 17.5 6.4 45 19-63 14-62 (72)
313 PF09702 Cas_Csa5: CRISPR-asso 23.0 1.2E+02 0.0026 20.6 2.9 23 3-28 61-83 (105)
314 COG0445 GidA Flavin-dependent 22.9 3.8E+02 0.0083 24.7 6.8 41 119-159 296-336 (621)
315 COG4747 ACT domain-containing 22.5 2.9E+02 0.0062 19.5 4.8 49 21-70 84-133 (142)
316 PF08206 OB_RNB: Ribonuclease 21.9 34 0.00074 20.4 0.2 36 44-80 7-43 (58)
317 cd00187 TOP4c DNA Topoisomeras 21.8 5.6E+02 0.012 22.8 7.7 57 7-63 226-287 (445)
318 PF12993 DUF3877: Domain of un 21.4 2E+02 0.0044 21.6 4.1 18 16-33 107-124 (175)
319 PHA03075 glutaredoxin-like pro 21.3 2E+02 0.0044 20.1 3.9 30 23-53 59-89 (123)
320 PRK15464 cold shock-like prote 21.0 76 0.0016 19.9 1.7 11 44-54 15-25 (70)
321 PRK12758 DNA topoisomerase IV 20.8 6.5E+02 0.014 24.7 8.2 59 6-65 241-303 (869)
322 PF07237 DUF1428: Protein of u 20.4 3E+02 0.0064 18.9 4.9 44 22-65 24-85 (103)
323 PF05189 RTC_insert: RNA 3'-te 20.2 2.6E+02 0.0056 18.8 4.3 45 8-52 12-64 (103)
324 PRK11901 hypothetical protein; 20.1 2.1E+02 0.0045 24.1 4.4 57 7-67 246-306 (327)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.5e-32 Score=227.27 Aligned_cols=163 Identities=23% Similarity=0.332 Sum_probs=142.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
...++|||+|||+++|+++|+++|+.||+|++|+|+. +++++|||||+|.++++|+.|++.||+..|.+++|.|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 4678999999999999999999999999999999954 5678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
.+... .....+|||.|||..+++++|+++|++||.|..+.++.+.
T Consensus 185 ~p~~~-----------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 185 RPGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred ccccc-----------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 64310 1123579999999999999999999999999999998876
Q ss_pred CC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ ++|||+|.+.++|++|++.|++..+.+ ....|.|..+..
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g--~~~~l~V~~a~~ 274 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEG--GSQPLTVRLAEE 274 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCC--CceeEEEEECCc
Confidence 43 599999999999999999999998862 136788887764
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=2.8e-31 Score=191.10 Aligned_cols=192 Identities=67% Similarity=1.111 Sum_probs=160.2
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
|+++.+++|||+|||.++-+.+|++||-+||.|.+|.|+....+..||||+|+++.+|+.||..-+|..++|..|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 88899999999999999999999999999999999999877777889999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
.... ......+.+.+. +.++.+......++...+...|.|.+||+..++++|++++.+.|.|+...+.++.
T Consensus 81 rggr----~s~~~~G~y~gg-----grgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg 151 (241)
T KOG0105|consen 81 RGGR----SSSDRRGSYSGG-----GRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG 151 (241)
T ss_pred cCCC----cccccccccCCC-----CCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc
Confidence 8663 122222222222 1222233334456778889999999999999999999999999999999998884
Q ss_pred CCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCC
Q 024269 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~ 204 (270)
++.|+|...++...|+.+|....+........|.|......
T Consensus 152 ---~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~ 192 (241)
T KOG0105|consen 152 ---VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENR 192 (241)
T ss_pred ---ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCC
Confidence 89999999999999999999998886555566666665443
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.5e-30 Score=224.75 Aligned_cols=173 Identities=20% Similarity=0.325 Sum_probs=145.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
...++|||+|||+.+++++|+++|..||.|..|.|.. +++++|||||+|.+.++|+.|++.|||..|+|+.|.|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3568999999999999999999999999999999954 5789999999999999999999999999999999999854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
......... ............+|||+||+..+++++|+++|+.||.|..+.+..+.
T Consensus 185 ~~~p~a~~~------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 185 SNMPQAQPI------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred ccccccccc------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence 422100000 00001111234689999999999999999999999999999999875
Q ss_pred CC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCC
Q 024269 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~ 204 (270)
.+ |||||+|.+.++|.+|++.||+..++ |+.|+|..+...
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elg----Gr~LrV~kAi~p 284 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTP 284 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC----CeEEEEEecCCC
Confidence 43 69999999999999999999999999 999999987643
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.2e-29 Score=214.51 Aligned_cols=163 Identities=22% Similarity=0.341 Sum_probs=142.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
++.++|||+|||+.+|+++|+++|+.||+|.+|+|+. ++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3678999999999999999999999999999999954 4788999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
.+... .....+|||.|||..+++++|.++|..||.|..+.++.+.
T Consensus 81 ~~~~~-----------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 125 (352)
T TIGR01661 81 RPSSD-----------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN 125 (352)
T ss_pred ccccc-----------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence 75411 1123589999999999999999999999999999988764
Q ss_pred C----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
. .|+|||+|.+.++|+.|++.|+|..+.+. ...|.+..+..
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~--~~~i~v~~a~~ 170 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC--TEPITVKFANN 170 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECCC
Confidence 3 36999999999999999999999988721 35677777653
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=2.6e-29 Score=219.34 Aligned_cols=171 Identities=21% Similarity=0.309 Sum_probs=145.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|.+|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|++|.|+++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4678999999999999999999999999999999965 46789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
.............. ........+|||+|||..+++++|+++|..||.|..+.++.+.
T Consensus 166 ~~~~~~~~~~~~~~-----------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 166 QAEKNRAAKAATHQ-----------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred chhhhhhhhccccc-----------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 64322111100000 0001125799999999999999999999999999999999876
Q ss_pred CC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 161 ~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
.+ |||||+|.+.++|..|++.|+|..+. |+.|.|.++.
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~----g~~i~v~~a~ 264 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELA----GRPIKVGYAQ 264 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEEC----CEEEEEEEcc
Confidence 54 69999999999999999999999998 9999999976
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=4e-28 Score=205.22 Aligned_cols=197 Identities=19% Similarity=0.241 Sum_probs=145.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCC--eEEEEEe
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 79 (270)
..++|||+|||..+++++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|+.|++.|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999998855 35789999999999999999999999999977 6789998
Q ss_pred cCCCCCCCCCC-CC------CCCCCCCCC----------CCCC----------------------CC-------CCCCCC
Q 024269 80 AHGGSGRGPSS-SD------RRGGYGGGG----------AGGA----------------------GG-------AGAGAG 113 (270)
Q Consensus 80 ~~~~~~~~~~~-~~------~~~~~~~~~----------~~~~----------------------~~-------~~~~~~ 113 (270)
+.......... .. ......... +... +. ....+.
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 87553111000 00 000000000 0000 00 000000
Q ss_pred -----------CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHH
Q 024269 114 -----------AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYA 178 (270)
Q Consensus 114 -----------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a 178 (270)
..........+.+|||+|||..+++++|.++|++||.|..+.++.+.. .|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 000001123345799999999999999999999999999999998763 36999999999999999
Q ss_pred HHHhCCccccCccCCceeeeecCCCCC
Q 024269 179 IRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 179 ~~~l~~~~~~~~~~~~~i~v~~~~~~~ 205 (270)
+..|||..+. |+.|.|.+.....
T Consensus 328 i~~lnG~~~~----gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLG----NRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEEC----CeEEEEEEccCCC
Confidence 9999999999 9999999876543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=4.6e-28 Score=211.35 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=140.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhc--CCCccCCeEEEEEecCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~~~~ 82 (270)
++++|||+|||..+++++|+++|+.||.|..|.++. .++||||+|++.++|+.|++.| ++..|.|++|.|+++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 689999999999999999999999999999999875 3789999999999999999864 78999999999999975
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC
Q 024269 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~ 162 (270)
........ ... .........+|+|.||+..+++++|.++|+.||.|..+.+..+...
T Consensus 78 ~~~~~~~~----~~~-------------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~ 134 (481)
T TIGR01649 78 QEIKRDGN----SDF-------------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV 134 (481)
T ss_pred cccccCCC----Ccc-------------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc
Confidence 42111100 000 0001123357999999999999999999999999999999887766
Q ss_pred cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
++|||+|.+.++|.+|++.|||..+.+. .+.|.|++++
T Consensus 135 ~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~l~v~~sk 172 (481)
T TIGR01649 135 FQALVEFESVNSAQHAKAALNGADIYNG--CCTLKIEYAK 172 (481)
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCC--ceEEEEEEec
Confidence 7999999999999999999999999621 3577777765
No 8
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.96 E-value=1.6e-27 Score=208.03 Aligned_cols=193 Identities=17% Similarity=0.203 Sum_probs=142.3
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. .+|+++|+++|+.||.|..|+++.+ .+|+|||+|.+.++|..|+..|||..|.|++|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4778999999998 6999999999999999999999765 369999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCC------CCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCC--ceEE
Q 024269 83 GSGRGPSSSDRR------GGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFA 154 (270)
Q Consensus 83 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--i~~~ 154 (270)
.....+...... ..+...... .. ..+..........+..+|||.|||..+++++|+++|+.||. +..+
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~~~~~~~---r~-~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~i 426 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDYSSSRNH---RF-KKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKF 426 (481)
T ss_pred ccccCCCCCcCcCCCcccccccCCccc---cC-CCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEE
Confidence 532221110000 001000000 00 00000011112346679999999999999999999999998 7778
Q ss_pred EEEeCC--CCcEEEEEecChhhHHHHHHHhCCccccCccCC--ceeeeecCC
Q 024269 155 EVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR--GRITVKRYD 202 (270)
Q Consensus 155 ~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~--~~i~v~~~~ 202 (270)
.+.... ..++|||+|.+.++|.+|+..||+..+.+.... -.|+|.+++
T Consensus 427 k~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 427 KFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFST 478 (481)
T ss_pred EEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEecc
Confidence 776543 236999999999999999999999999822111 147777664
No 9
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=3.6e-27 Score=204.91 Aligned_cols=192 Identities=21% Similarity=0.253 Sum_probs=140.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccC-CeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~~~ 81 (270)
..++|||+|||.++++++|.++|++||.|.+|+|+. ++.++|||||+|.+.++|++||+.||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 358999999999999999999999999999999965 4789999999999999999999999998885 7877776553
Q ss_pred CCCCC-----CCCCC-----CCCCCCC----------C----CCCCCC-------------------------CCCC---
Q 024269 82 GGSGR-----GPSSS-----DRRGGYG----------G----GGAGGA-------------------------GGAG--- 109 (270)
Q Consensus 82 ~~~~~-----~~~~~-----~~~~~~~----------~----~~~~~~-------------------------~~~~--- 109 (270)
..... ..... .....+. . ....+. .+..
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 21100 00000 0000000 0 000000 0000
Q ss_pred CCC--CCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHh--CCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCc
Q 024269 110 AGA--GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 110 ~~~--~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 185 (270)
... .............+|||+||+..+++++|+++|+.| |.|+.+.+++ +||||+|++.++|++|++.||+.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r----gfAFVeF~s~e~A~kAi~~lnG~ 292 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR----DYAFVHFEDREDAVKAMDELNGK 292 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec----CeEEEEeCCHHHHHHHHHHhCCC
Confidence 000 000001112335689999999999999999999999 9999998876 49999999999999999999999
Q ss_pred cccCccCCceeeeecCCCC
Q 024269 186 EFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 186 ~~~~~~~~~~i~v~~~~~~ 204 (270)
.+. ++.|.|..++..
T Consensus 293 ~i~----Gr~I~V~~Akp~ 307 (578)
T TIGR01648 293 ELE----GSEIEVTLAKPV 307 (578)
T ss_pred EEC----CEEEEEEEccCC
Confidence 999 999999998743
No 10
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.3e-28 Score=184.21 Aligned_cols=171 Identities=20% Similarity=0.279 Sum_probs=145.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.-|||+.|.+.++.++|++.|..||+|.+++|++ |++++||+||.|.+.++|+.||..|||..|+++.|+-.|+.-+
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRK 142 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRK 142 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccC
Confidence 4689999999999999999999999999999965 5899999999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCc
Q 024269 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g 163 (270)
....... .......+.+.....++||++|++..+++++|++.|+.||.|..+.+.+++ |
T Consensus 143 p~e~n~~-------------------~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--G 201 (321)
T KOG0148|consen 143 PSEMNGK-------------------PLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--G 201 (321)
T ss_pred ccccCCC-------------------CccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--c
Confidence 2100000 011122334556678999999999999999999999999999999999987 7
Q ss_pred EEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 164 ~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
|+||.|++.|.|..||.++|+.++. |..++....+
T Consensus 202 YaFVrF~tkEaAahAIv~mNntei~----G~~VkCsWGK 236 (321)
T KOG0148|consen 202 YAFVRFETKEAAAHAIVQMNNTEIG----GQLVRCSWGK 236 (321)
T ss_pred eEEEEecchhhHHHHHHHhcCceeC----ceEEEEeccc
Confidence 9999999999999999999999998 7766655544
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2e-27 Score=212.21 Aligned_cols=158 Identities=27% Similarity=0.452 Sum_probs=138.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCC
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~ 84 (270)
+|||+|||+++|+++|.++|+.||.|.+|.|.. +++++|||||+|.+.++|++|++.||+..|.|++|.|.|+....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999965 46789999999999999999999999999999999999975321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC--
Q 024269 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-- 162 (270)
.. ......+|||.|||.++++++|.++|+.||.|..|.+..+..+
T Consensus 82 ~~---------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~s 128 (562)
T TIGR01628 82 SL---------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKS 128 (562)
T ss_pred cc---------------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCc
Confidence 00 0011247999999999999999999999999999999887543
Q ss_pred -cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 163 -TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 -g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
|||||+|++.++|..|++++++..+. ++.|.+....
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~~----~~~i~v~~~~ 165 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLLN----DKEVYVGRFI 165 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEec----CceEEEeccc
Confidence 79999999999999999999999998 8888876544
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=1.7e-26 Score=204.43 Aligned_cols=185 Identities=19% Similarity=0.291 Sum_probs=138.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcc------------CceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKY------------GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~------------G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
...++|||+|||+.+|+++|.++|..| +.|..+.+. ..+|||||+|.+.++|..||. |||+.|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 567899999999999999999999975 244444443 458999999999999999996 9999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCc
Q 024269 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (270)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 151 (270)
|++|.|....................... .. .................+|||+|||..+++++|.++|+.||.|
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQKNPDD---NA---KNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CceeEecCccccCCccccCCCCCCCCCcc---cc---cccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 99999976654422111110000000000 00 0000000111223456799999999999999999999999999
Q ss_pred eEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 152 CFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
..+.++.+.. .|||||+|.+.++|..|++.|+|..+. +..|.|..+.
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~----~~~l~v~~a~ 373 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG----DNKLHVQRAC 373 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEECc
Confidence 9999887653 369999999999999999999999998 8899998875
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=7.2e-27 Score=208.59 Aligned_cols=179 Identities=22% Similarity=0.360 Sum_probs=147.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccC----CeEEEEE
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRVE 78 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~ 78 (270)
..++|||+|||.++|+++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|..|++.|||..|. |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 4578999999999999999999999999999999653 677899999999999999999999999999 9999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEe
Q 024269 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 158 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~ 158 (270)
++.....+............ ..........+|||+||+..+++++|+++|+.||.|..+.++.
T Consensus 257 ~a~~k~er~~~~~~~~~~~~-----------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 257 RAQKRAEREAELRRKFEELQ-----------------QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred cccChhhhHHHHHhhHHhhh-----------------hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 88765332111100000000 0011123456899999999999999999999999999999988
Q ss_pred CCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCC
Q 024269 159 DSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 159 ~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~ 204 (270)
+..+ |+|||+|.+.++|.+|+..||+..+. |+.|.|..+...
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~----gk~l~V~~a~~k 364 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG----GKPLYVALAQRK 364 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC----CceeEEEeccCc
Confidence 7533 79999999999999999999999998 999999888753
No 14
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=7.1e-27 Score=177.23 Aligned_cols=164 Identities=22% Similarity=0.326 Sum_probs=145.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
+..+.|.|.-||.++|++||+.||...|+|+.|++.. +|.+.||+||.|.+++||++|+..|||..+..+.|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 4557899999999999999999999999999999955 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
++.. ....+..|||.+||..++..+|+++|++||.|....+..+.
T Consensus 119 RPSs-----------------------------------~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq 163 (360)
T KOG0145|consen 119 RPSS-----------------------------------DSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ 163 (360)
T ss_pred cCCh-----------------------------------hhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc
Confidence 8762 12334689999999999999999999999999887777665
Q ss_pred CC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCC
Q 024269 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~ 204 (270)
-+ |.+||.|+...+|++|++.|||..-.++ ...|.|+++...
T Consensus 164 vtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~--tepItVKFannP 209 (360)
T KOG0145|consen 164 VTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGC--TEPITVKFANNP 209 (360)
T ss_pred ccceecceeEEEecchhHHHHHHHhccCCCCCCC--CCCeEEEecCCc
Confidence 44 5999999999999999999999987643 567889998754
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=4.5e-26 Score=201.64 Aligned_cols=188 Identities=18% Similarity=0.251 Sum_probs=140.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
...++|||+|||..+|+++|.++|..||.|..+.|.. ++.++|||||+|.+.++|..|++.|||+.|.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 3458999999999999999999999999999999854 5788999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCC----------CHHHHHHHHHHhCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA----------SWQDLKDHMRKAGD 150 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~ 150 (270)
..................... .. ............+..+|+|.|+...- ..++|+++|.+||.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~ 445 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLL---AK----ALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGP 445 (509)
T ss_pred ccCCCCCCccccccccccccc---cc----cchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCC
Confidence 754222111100000000000 00 00000001122345789999986321 23678999999999
Q ss_pred ceEEEEEeCCC-------CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 151 VCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 151 i~~~~~~~~~~-------~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
|..+.|+.+.. .|++||+|.+.++|++|+..|||..+. |+.|.+.+..
T Consensus 446 v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~----gr~v~~~~~~ 500 (509)
T TIGR01642 446 LINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN----DRVVVAAFYG 500 (509)
T ss_pred eeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEeC
Confidence 99999987521 269999999999999999999999999 9999888764
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.94 E-value=1.1e-26 Score=167.27 Aligned_cols=164 Identities=23% Similarity=0.308 Sum_probs=142.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
+...||||+||+..++++.|+++|-+.|+|+++.+.. +...+|||||+|.++|+|+-|++.||...+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 5678999999999999999999999999999999954 4677999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceE-EEEEeC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~ 159 (270)
... +.....+..|||+||.+.+++..|-+.|+.||.+.. -+++.+
T Consensus 87 s~~----------------------------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 87 SAH----------------------------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred ccc----------------------------------cccccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 622 122233478999999999999999999999998876 355555
Q ss_pred CCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCC
Q 024269 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 160 ~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.++ +++||.|.+.+.+.+|+..|++..+. .+.|.|..+....
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~itv~ya~k~~ 178 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLC----NRPITVSYAFKKD 178 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhc----CCceEEEEEEecC
Confidence 553 59999999999999999999999999 8899998886544
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=9.1e-27 Score=188.09 Aligned_cols=170 Identities=22% Similarity=0.384 Sum_probs=144.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCc-cCC--eEEEEE
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYN-FDG--CRLRVE 78 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g--~~l~v~ 78 (270)
+.-+|||+-||..++|.||+++|++||.|.+|.|++ ++.++|||||.|.+.++|.+|+..||+.. |.| .+|.|.
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk 112 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVK 112 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeec
Confidence 456899999999999999999999999999999955 57899999999999999999999998854 444 789998
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEe
Q 024269 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 158 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~ 158 (270)
++.....+. ....+|||+-|+..+++.+++++|.+||.|++|.|++
T Consensus 113 ~Ad~E~er~----------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilr 158 (510)
T KOG0144|consen 113 YADGERERI----------------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILR 158 (510)
T ss_pred ccchhhhcc----------------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhee
Confidence 887552211 2346899999999999999999999999999999999
Q ss_pred CCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCCCCCC
Q 024269 159 DSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSRSR 209 (270)
Q Consensus 159 ~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~~r~r 209 (270)
+..+ |++||.|.+.+.|..|++.||+..-- .....+|.|++++..+.+..
T Consensus 159 d~~~~sRGcaFV~fstke~A~~Aika~ng~~tm-eGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 159 DPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM-EGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred cccccccceeEEEEehHHHHHHHHHhhccceee-ccCCCceEEEecccCCCchH
Confidence 8766 79999999999999999999997653 11257889999986665443
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.94 E-value=2.7e-25 Score=194.12 Aligned_cols=193 Identities=21% Similarity=0.303 Sum_probs=141.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
+++|||+|||..+|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|..|+..|||..|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 589999999999999999999999999999999653 57799999999999999999999999999999999999874
Q ss_pred CCCCCCCCCCCCC----CCCC-----------------CC-CCCCCCCCCCC----------------------------
Q 024269 83 GSGRGPSSSDRRG----GYGG-----------------GG-AGGAGGAGAGA---------------------------- 112 (270)
Q Consensus 83 ~~~~~~~~~~~~~----~~~~-----------------~~-~~~~~~~~~~~---------------------------- 112 (270)
............. ...+ .. .++....+...
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 3221111000000 0000 00 00000000000
Q ss_pred -CCCCCCC----CCCCcceEEecCCCCCCC----------HHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHH
Q 024269 113 -GAGRFGI----SRHSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKY 177 (270)
Q Consensus 113 -~~~~~~~----~~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~ 177 (270)
....... ...+..+|+|.|+....+ .++|.++|.+||.|+.+.+......|++||+|.+.++|+.
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0000000 124567888999854433 3679999999999999999877667899999999999999
Q ss_pred HHHHhCCccccCccCCceeeeecCC
Q 024269 178 AIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 178 a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
|++.|||..++ |+.|.+.+..
T Consensus 426 A~~~lnGr~f~----gr~i~~~~~~ 446 (457)
T TIGR01622 426 AFQALNGRYFG----GKMITAAFVV 446 (457)
T ss_pred HHHHhcCcccC----CeEEEEEEEc
Confidence 99999999999 9999888754
No 19
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.94 E-value=1e-26 Score=178.94 Aligned_cols=146 Identities=33% Similarity=0.595 Sum_probs=135.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 86 (270)
-.|||+|||.++++.+|+.||++||+|.+|.|+ +.||||-.++...|..|+..|||..|+|..|.|+.++.+.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs-- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS-- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccC--
Confidence 469999999999999999999999999999998 6799999999999999999999999999999999988661
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEE
Q 024269 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGV 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~ 166 (270)
....+|+|+|+.+..+-++|+..|++||+|+.|+++++ |+|
T Consensus 76 -----------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~f 116 (346)
T KOG0109|consen 76 -----------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAF 116 (346)
T ss_pred -----------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeE
Confidence 13368999999999999999999999999999999996 999
Q ss_pred EEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 167 VDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 167 v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
|.|+..++|..|+..|++.++. |..+.|..+.
T Consensus 117 vh~d~~eda~~air~l~~~~~~----gk~m~vq~st 148 (346)
T KOG0109|consen 117 VHFDRAEDAVEAIRGLDNTEFQ----GKRMHVQLST 148 (346)
T ss_pred EEEeeccchHHHHhcccccccc----cceeeeeeec
Confidence 9999999999999999999999 8888877654
No 20
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.1e-25 Score=184.11 Aligned_cols=184 Identities=18% Similarity=0.277 Sum_probs=147.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.||||++||+.++.++|.++|+.+|+|.++.+... +..+||+||+|.=.+|++.|++.+++..|.|+.|.|.++...
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 89999999999999999999999999999999553 467999999999999999999999999999999999999866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-
Q 024269 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~- 162 (270)
................. .....+.......+.+.|+|.|||+.+...+|+.+|+.||.|..+.|+....+
T Consensus 86 ~r~e~~~~~e~~~veK~---------~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgk 156 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKP---------IEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGK 156 (678)
T ss_pred ccchhcccccchhhhcc---------cccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCC
Confidence 32221110000000000 00000000111233689999999999999999999999999999999987766
Q ss_pred --cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 --g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
|||||+|.+..+|..|++.+|+.+|. |++|-|+++-.
T Consensus 157 lcGFaFV~fk~~~dA~~Al~~~N~~~i~----gR~VAVDWAV~ 195 (678)
T KOG0127|consen 157 LCGFAFVQFKEKKDAEKALEFFNGNKID----GRPVAVDWAVD 195 (678)
T ss_pred ccceEEEEEeeHHHHHHHHHhccCceec----CceeEEeeecc
Confidence 69999999999999999999999999 99999998763
No 21
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=2.5e-25 Score=180.60 Aligned_cols=162 Identities=22% Similarity=0.284 Sum_probs=138.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccC-ceEEEEEecC----CCCCceEEEEEccHHHHHHHHHhcCC--CccCCeEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLR 76 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~i~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~ 76 (270)
..+|.|||+|||++.++++|.+.|++.+ .|++|.|... .+++|||||+|+++..|..|-.+|-. +.+.|+.+.
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 4689999999999999999999999987 4677777442 47899999999999999999876644 556899999
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEE
Q 024269 77 VELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (270)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~ 156 (270)
|+|+.+...-... .......|||.||+.++|++.|+++|..||.|+.++.
T Consensus 242 VdWAep~~e~ded------------------------------~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk 291 (506)
T KOG0117|consen 242 VDWAEPEEEPDED------------------------------TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK 291 (506)
T ss_pred eeccCcccCCChh------------------------------hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeec
Confidence 9999977332211 2223468999999999999999999999999999998
Q ss_pred EeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 157 SRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 157 ~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
++| ||||.|.+.++|.+|++.+|++++. |..|.|..++.
T Consensus 292 ~rD----YaFVHf~eR~davkAm~~~ngkeld----G~~iEvtLAKP 330 (506)
T KOG0117|consen 292 PRD----YAFVHFAEREDAVKAMKETNGKELD----GSPIEVTLAKP 330 (506)
T ss_pred ccc----eeEEeecchHHHHHHHHHhcCceec----CceEEEEecCC
Confidence 876 9999999999999999999999999 99999888873
No 22
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=3.1e-24 Score=174.24 Aligned_cols=156 Identities=24% Similarity=0.398 Sum_probs=136.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCcc-CCeEEEEEec
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNF-DGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~-~g~~l~v~~~ 80 (270)
..+-|||++||.++.|++|.-||++.|+|-+++|+++ |.++|||||+|-+.++|+.|++.||+..| .|+.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 4588999999999999999999999999999999765 78999999999999999999999999999 5999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCC-ceEEEEEeC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~ 159 (270)
... ++|||+|+|.+.++++|.+.|.+.++ |.++.+...
T Consensus 162 van-----------------------------------------~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~ 200 (506)
T KOG0117|consen 162 VAN-----------------------------------------CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPS 200 (506)
T ss_pred eec-----------------------------------------ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecC
Confidence 755 89999999999999999999999984 777777654
Q ss_pred C-----CCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 160 S-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 160 ~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
+ +.|||||+|++...|..|..+|-...|. .-+..+.|++++.
T Consensus 201 p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k--lwgn~~tVdWAep 247 (506)
T KOG0117|consen 201 PDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK--LWGNAITVDWAEP 247 (506)
T ss_pred ccccccccceEEEEeecchhHHHHHhhccCCcee--ecCCcceeeccCc
Confidence 3 3379999999999999999988666554 1177788888874
No 23
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=1.5e-24 Score=164.03 Aligned_cols=163 Identities=40% Similarity=0.702 Sum_probs=136.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||++||..+.+.+|..||..||.|.+|.|+ .||+||+|+++.+|..|+..||+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 368999999999999999999999999999997 689999999999999999999999999988999988754211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEE
Q 024269 87 GPSSSDRRGGYGGGGAGGAGGAGA-GAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYG 165 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~ 165 (270)
. +.+.++. .+.......+..+.+.+.|.+++..+.+++|.+.|..+|.+....+.. +++
T Consensus 77 ~----------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~ 136 (216)
T KOG0106|consen 77 R----------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFA 136 (216)
T ss_pred c----------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----ccc
Confidence 1 0000000 012334566778889999999999999999999999999995555522 489
Q ss_pred EEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 166 VVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 166 ~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
||+|...++|..|+..|++..+. ++.|.+
T Consensus 137 ~v~Fs~~~da~ra~~~l~~~~~~----~~~l~~ 165 (216)
T KOG0106|consen 137 FVEFSEQEDAKRALEKLDGKKLN----GRRISV 165 (216)
T ss_pred ceeehhhhhhhhcchhccchhhc----Cceeee
Confidence 99999999999999999999999 899888
No 24
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=5.6e-24 Score=161.55 Aligned_cols=193 Identities=23% Similarity=0.311 Sum_probs=145.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEe---cCCCCCceEEEEEccHHHHHHHHHhcCCCccCC--eEEEEEec
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~~ 80 (270)
...|||.+||+.+|..||+++|+.||.|..-+|. .++.++|.+||.|...++|+.|++.|||..-.| .+|.|+++
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 4689999999999999999999999999877763 357899999999999999999999999988765 68999999
Q ss_pred CCCCCCCCCC--CCCCCCCCC--CCCCCC-----------------------CCCC-CCCCCCCCCCCCCCcceEEecCC
Q 024269 81 HGGSGRGPSS--SDRRGGYGG--GGAGGA-----------------------GGAG-AGAGAGRFGISRHSEYRVIVRGL 132 (270)
Q Consensus 81 ~~~~~~~~~~--~~~~~~~~~--~~~~~~-----------------------~~~~-~~~~~~~~~~~~~~~~~l~v~~l 132 (270)
..+....... ......... .++.+. ...+ .+-.+...+.....+++|||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 8773221100 000000000 000000 0000 00011112233345799999999
Q ss_pred CCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 133 PSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 133 ~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
.+++++..|.++|..||.|..+++++|..+ ||+||.+.+.++|..|+..|||..+. ++.+.|.+-.
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg----~rvLQVsFKt 356 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG----DRVLQVSFKT 356 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc----ceEEEEEEec
Confidence 999999999999999999999999998764 69999999999999999999999998 8888877643
No 25
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=3e-23 Score=172.38 Aligned_cols=193 Identities=20% Similarity=0.350 Sum_probs=140.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEe--cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.-.|.|.|||+.+.+.+|..+|+.||.|.+|.|. .+++..|||||+|.+..+|..|++.+|+.+|+|++|-|.||-+.
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 4579999999999999999999999999999994 46778899999999999999999999999999999999999755
Q ss_pred CCCCCCCC--------------CCC-----C-CCCCCC-----------CCCC-----C-----------CC--CCCCCC
Q 024269 84 SGRGPSSS--------------DRR-----G-GYGGGG-----------AGGA-----G-----------GA--GAGAGA 114 (270)
Q Consensus 84 ~~~~~~~~--------------~~~-----~-~~~~~~-----------~~~~-----~-----------~~--~~~~~~ 114 (270)
........ ... + .+...- .+.. + .. +.....
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 32222110 000 0 000000 0000 0 00 000000
Q ss_pred CCCC------CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhC-
Q 024269 115 GRFG------ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLD- 183 (270)
Q Consensus 115 ~~~~------~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~- 183 (270)
.... .....+.+|||.|||+++++++|.++|++||.|.++.++.++.+ |.|||.|.+..+|+.||....
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Asp 356 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASP 356 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcCc
Confidence 0000 01123479999999999999999999999999999999988776 599999999999999999762
Q ss_pred ----C-ccccCccCCceeeeecCC
Q 024269 184 ----D-TEFRNPWARGRITVKRYD 202 (270)
Q Consensus 184 ----~-~~~~~~~~~~~i~v~~~~ 202 (270)
+ ..++ |+.|.|..+-
T Consensus 357 a~e~g~~ll~----GR~Lkv~~Av 376 (678)
T KOG0127|consen 357 ASEDGSVLLD----GRLLKVTLAV 376 (678)
T ss_pred cCCCceEEEe----ccEEeeeecc
Confidence 2 2334 7777776654
No 26
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.90 E-value=9.8e-22 Score=147.28 Aligned_cols=187 Identities=20% Similarity=0.283 Sum_probs=143.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHH----HHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEE
Q 024269 1 MSGRFSRTIYVGNLPSDIREYEVED----LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~----~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (270)
|+..++.||||.||+..+..++|+. ||++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|..|.|+++.
T Consensus 4 ~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 4 MSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred cccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 4457888999999999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCC----CCCCCCCC----------CCCCCCCCCCCCCCCCCC-CCCCCCcceEEecCCCCCCCHHHH
Q 024269 77 VELAHGGSGRGPSSS----DRRGGYGG----------GGAGGAGGAGAGAGAGRF-GISRHSEYRVIVRGLPSSASWQDL 141 (270)
Q Consensus 77 v~~~~~~~~~~~~~~----~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~v~~l~~~~~~~~l 141 (270)
|+||+.......... .+...... ...+..........+... .....+...+++.|||..++.+.+
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 999986643221110 00000000 000000000000111111 334567789999999999999999
Q ss_pred HHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCcccc
Q 024269 142 KDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 142 ~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
..+|.+|.....+.++.... +.|||+|.+...|..|...+.+..+.
T Consensus 164 ~~lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it 209 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKIT 209 (221)
T ss_pred HHHHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceec
Confidence 99999999988888877554 49999999999999999999998886
No 27
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=7.3e-23 Score=162.52 Aligned_cols=170 Identities=19% Similarity=0.313 Sum_probs=141.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
|.|||+.|.+.+.++.|+..|..||+|+.|.+-. |++.+|||||+|+-+|.|+.|++.|||.+++|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 6799999999999999999999999999999944 5788999999999999999999999999999999999643322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-
Q 024269 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~- 162 (270)
..-. +.-+........-.+|||..+.++++++||+..|+.||+|..|.+.+.+.+
T Consensus 194 pQAQ------------------------piID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 194 PQAQ------------------------PIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 249 (544)
T ss_pred cccc------------------------hHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC
Confidence 0000 000000111223469999999999999999999999999999999988655
Q ss_pred ---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCC
Q 024269 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 163 ---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~ 204 (270)
||+||+|.+.....+|+..||-..++ |..++|-..-..
T Consensus 250 ~HkGyGfiEy~n~qs~~eAiasMNlFDLG----GQyLRVGk~vTP 290 (544)
T KOG0124|consen 250 GHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTP 290 (544)
T ss_pred CccceeeEEeccccchHHHhhhcchhhcc----cceEecccccCC
Confidence 69999999999999999999999998 888888766543
No 28
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=1.5e-21 Score=162.66 Aligned_cols=151 Identities=26% Similarity=0.401 Sum_probs=134.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||| +++|+.+|.++|+.+|+|..+.+..+-.+.|||||.|.++++|.+||+.||...+.|++|.|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd--- 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD--- 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC---
Confidence 478998 99999999999999999999999433239999999999999999999999999999999999998743
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC--cE
Q 024269 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TY 164 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--g~ 164 (270)
...+||.||++.++..+|.++|+.||.|..|++..+.++ ||
T Consensus 76 -------------------------------------~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~ 118 (369)
T KOG0123|consen 76 -------------------------------------PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY 118 (369)
T ss_pred -------------------------------------CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee
Confidence 112999999999999999999999999999999998876 58
Q ss_pred EEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCC
Q 024269 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 165 ~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~ 205 (270)
||+|++.+.|.+|++.+||..+. +..|-|.......
T Consensus 119 -FV~f~~e~~a~~ai~~~ng~ll~----~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 119 -FVQFESEESAKKAIEKLNGMLLN----GKKIYVGLFERKE 154 (369)
T ss_pred -EEEeCCHHHHHHHHHHhcCcccC----CCeeEEeeccchh
Confidence 99999999999999999999998 8888776665433
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.88 E-value=4.7e-22 Score=170.19 Aligned_cols=165 Identities=23% Similarity=0.420 Sum_probs=139.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CC----CCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
|||.||++.+|.++|...|...|.|..+.|.. ++ .+.|||||+|.++++|+.|++.|+|+.|+|+.|.|.++..
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~ 597 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISEN 597 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccC
Confidence 99999999999999999999999999998833 22 2459999999999999999999999999999999999983
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC-
Q 024269 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE- 161 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~- 161 (270)
....... .........+.|+|.|+|..++..+++.+|..||.+..+.++....
T Consensus 598 k~~~~~g--------------------------K~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k 651 (725)
T KOG0110|consen 598 KPASTVG--------------------------KKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK 651 (725)
T ss_pred ccccccc--------------------------cccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcc
Confidence 2110000 1112222367999999999999999999999999999999987622
Q ss_pred ---CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 162 ---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 162 ---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
.|||||+|-++.+|..|+.+|.+..+. |+++.++++..
T Consensus 652 ~a~rGF~Fv~f~t~~ea~nA~~al~STHly----GRrLVLEwA~~ 692 (725)
T KOG0110|consen 652 GAHRGFGFVDFLTPREAKNAFDALGSTHLY----GRRLVLEWAKS 692 (725)
T ss_pred hhhccceeeeccCcHHHHHHHHhhccccee----chhhheehhcc
Confidence 269999999999999999999999998 99999988764
No 30
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.88 E-value=1.8e-21 Score=139.56 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=71.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
.+.|||+||+..+++.||+.+|..||.|..++|...+ .|||||+|+++.+|+.|+..|+|..|. |..|+|+...+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-PGfAFVEFed~RDA~DAvr~LDG~~~c----G~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-PGFAFVEFEDPRDAEDAVRYLDGKDIC----GSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-CCceEEeccCcccHHHHHhhcCCcccc----CceEEEEeecC
Confidence 5799999999999999999999999999999999854 469999999999999999999999999 99999999875
Q ss_pred CCC
Q 024269 204 SPS 206 (270)
Q Consensus 204 ~~~ 206 (270)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 443
No 31
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.87 E-value=1.3e-20 Score=135.13 Aligned_cols=78 Identities=45% Similarity=0.715 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.-.+.|||+||+..+++.||+.+|..||+|..|+|.. .+.|||||||+++.||+.|+..|+|..|.|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 4579999999999999999999999999999999965 56899999999999999999999999999999999998855
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.85 E-value=2e-19 Score=157.11 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
..++|||+|||+++++++|+++|+.||.|..+.|.. ++.++|||||+|.+.++|..|++.||+..|+|+.|.|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 36789999999999999999999999999999999999987
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
.+
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 54
No 33
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=4.3e-20 Score=134.67 Aligned_cols=80 Identities=25% Similarity=0.488 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
..+++|||+|||+.+|+++|+++|.+||.|.+|.|.. +++++|||||+|.+.++|+.|++.||+..|+|++|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4678999999999999999999999999999999964 4688999999999999999999999999999999999998
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 112 ~~~ 114 (144)
T PLN03134 112 NDR 114 (144)
T ss_pred CcC
Confidence 765
No 34
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=2.7e-20 Score=155.26 Aligned_cols=168 Identities=27% Similarity=0.437 Sum_probs=143.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
+....|||.||++.++..+|.++|+.||.|+.|++..+ ..++|| ||+|+++++|++|++.|||..+.|+.|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 44555999999999999999999999999999999654 358999 9999999999999999999999999999998887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC
Q 024269 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~ 162 (270)
...+...... ....-..++|.+++..++++.|...|..+|.|..+.++.+..+
T Consensus 153 ~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g 205 (369)
T KOG0123|consen 153 KEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG 205 (369)
T ss_pred hhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC
Confidence 6443322211 1223457899999999999999999999999999999886554
Q ss_pred ---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
+|+||.|+++++|..|++.|++..+. +..+.|..+..
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~----~~~~~V~~aqk 245 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFG----DKELYVGRAQK 245 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCC----ccceeeccccc
Confidence 69999999999999999999999998 67777766654
No 35
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.5e-20 Score=152.36 Aligned_cols=80 Identities=28% Similarity=0.409 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCC-ccCC--eEEEEEe
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGY-NFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~-~~~g--~~l~v~~ 79 (270)
+.++|||+-|++.+||.+|+++|++||.|++|.|..+ +.++|||||+|.+.|.|..|++.|||. .+.| .+|.|.|
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 4689999999999999999999999999999999774 689999999999999999999999994 4544 7999999
Q ss_pred cCCCC
Q 024269 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+...+
T Consensus 203 ADtqk 207 (510)
T KOG0144|consen 203 ADTQK 207 (510)
T ss_pred cccCC
Confidence 97664
No 36
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.84 E-value=2.4e-19 Score=133.47 Aligned_cols=183 Identities=18% Similarity=0.267 Sum_probs=131.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCC----CceEEEEEccHHHHHHHHHhcCCCccC---CeEEEEE
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRP----PCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRVE 78 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~----~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~ 78 (270)
-+||||.+||.++...+|..||..|-..+...|+.+++. +-+|||+|.+..+|.+|+..|||+.|+ +..|+++
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 589999999999999999999999987888888777554 379999999999999999999999996 7899999
Q ss_pred ecCCCCCCCCCCCCCC----CCCCCCCCC--------------CCCC-----CCCCCC----------------------
Q 024269 79 LAHGGSGRGPSSSDRR----GGYGGGGAG--------------GAGG-----AGAGAG---------------------- 113 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~----~~~~~~~~~--------------~~~~-----~~~~~~---------------------- 113 (270)
+++...+....+.... ..+.....+ .... .+..+.
T Consensus 114 lAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~a 193 (284)
T KOG1457|consen 114 LAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPSA 193 (284)
T ss_pred ehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCcc
Confidence 9985533222111100 000000000 0000 000000
Q ss_pred ------CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccc
Q 024269 114 ------AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 114 ------~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~ 187 (270)
............+|||.||..++++++|+.+|+.|.....+++......-.||++|++.+.|..|+..|+|..+
T Consensus 194 ~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~~ 273 (284)
T KOG1457|consen 194 NAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNLL 273 (284)
T ss_pred cchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhccee
Confidence 00000011223499999999999999999999999887777775544334999999999999999999999998
Q ss_pred c
Q 024269 188 R 188 (270)
Q Consensus 188 ~ 188 (270)
.
T Consensus 274 s 274 (284)
T KOG1457|consen 274 S 274 (284)
T ss_pred c
Confidence 7
No 37
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.83 E-value=9e-20 Score=152.31 Aligned_cols=188 Identities=24% Similarity=0.336 Sum_probs=134.2
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCCC
Q 024269 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSG 85 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~~ 85 (270)
|||+||.+++++++|+.+|+.||.|..|.+.. +|.++||+||+|.+.++|..|+..|||+.|.|+.|+|........
T Consensus 281 l~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 281 LYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred hhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 99999999999999999999999999999954 689999999999999999999999999999999999988765533
Q ss_pred CCCCC---CCCCCCCCCCCCCCCCC-----------CC--C-------------CCCC--------CCCCCCC-------
Q 024269 86 RGPSS---SDRRGGYGGGGAGGAGG-----------AG--A-------------GAGA--------GRFGISR------- 121 (270)
Q Consensus 86 ~~~~~---~~~~~~~~~~~~~~~~~-----------~~--~-------------~~~~--------~~~~~~~------- 121 (270)
..... ......-..+...+.++ .+ . .+.+ .....+.
T Consensus 361 ~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~ 440 (549)
T KOG0147|consen 361 TKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPAFD 440 (549)
T ss_pred cccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccccC
Confidence 22210 00000000000000000 00 0 0000 0011111
Q ss_pred CCcceEEecCCCCCC--C--------HHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCcc
Q 024269 122 HSEYRVIVRGLPSSA--S--------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~--~--------~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 191 (270)
.+..++.+.|+-... | .+++.+.|.++|+|+.|.+.++.. |+.||.|.+.+.|..|+.+|||.++.
T Consensus 441 i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~--- 516 (549)
T KOG0147|consen 441 IPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFA--- 516 (549)
T ss_pred CccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhc---
Confidence 455677777753222 1 357888999999998888877655 79999999999999999999999999
Q ss_pred CCceeeeecC
Q 024269 192 ARGRITVKRY 201 (270)
Q Consensus 192 ~~~~i~v~~~ 201 (270)
|+-|...+-
T Consensus 517 -gr~Ita~~~ 525 (549)
T KOG0147|consen 517 -GRMITAKYL 525 (549)
T ss_pred -cceeEEEEe
Confidence 888876654
No 38
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.83 E-value=8.3e-20 Score=134.39 Aligned_cols=79 Identities=34% Similarity=0.529 Sum_probs=74.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.-.+|.|.||.+.+|.++|..+|++||.|.+|+|.. |..++|||||.|.+..+|+.|++.|+|.+|+|+.|.|++|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 457899999999999999999999999999999954 67899999999999999999999999999999999999988
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 55
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.83 E-value=5.4e-20 Score=140.72 Aligned_cols=139 Identities=27% Similarity=0.417 Sum_probs=117.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
|.+++-+||||+||+..+||+-|..||++.|.|..++|+.+ .|+|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 56788999999999999999999999999999999999754 3445554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
..+.... .+....-..+||+.|...++-++|++.|.+||+|.++++++|.
T Consensus 49 ~~p~nQs------------------------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 49 TAPGNQS------------------------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred cCcccCC------------------------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 4331111 1111223579999999999999999999999999999999997
Q ss_pred CC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCC
Q 024269 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+ ||+||.|.+.++|+.||.+|+|..+. ++.|+...+.+++
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG----~R~IRTNWATRKp 143 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG----RRTIRTNWATRKP 143 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeec----cceeeccccccCc
Confidence 66 69999999999999999999999999 9999999988776
No 40
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=3.8e-19 Score=135.93 Aligned_cols=193 Identities=21% Similarity=0.288 Sum_probs=141.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCC-CccCC--eEEEEEe
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDG-YNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g--~~l~v~~ 79 (270)
+.++|||+.|.+.-+|||++.+|..||.|.+|.+.. ++.++|+|||.|.+.-+|..||..|+| ..+.| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568999999999999999999999999999999965 688999999999999999999999999 44544 6799999
Q ss_pred cCCCCCCCC-----------------------------------------------------------------------
Q 024269 80 AHGGSGRGP----------------------------------------------------------------------- 88 (270)
Q Consensus 80 ~~~~~~~~~----------------------------------------------------------------------- 88 (270)
+...+++..
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 964431100
Q ss_pred ----CCCCC-CC--------CCCCCC-CCCCCC----CCC---------------C---C-------------------C
Q 024269 89 ----SSSDR-RG--------GYGGGG-AGGAGG----AGA---------------G---A-------------------G 113 (270)
Q Consensus 89 ----~~~~~-~~--------~~~~~~-~~~~~~----~~~---------------~---~-------------------~ 113 (270)
..... .. ...... ..+... .++ . + .
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 00000 00 000000 000000 000 0 0 0
Q ss_pred CC-----------------CCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCc----EEEEEecCh
Q 024269 114 AG-----------------RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNP 172 (270)
Q Consensus 114 ~~-----------------~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g----~~~v~f~~~ 172 (270)
+. ......+.++.|||..||....+.+|.++|-.||.|+..++..|..++ |+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00 001122568899999999999999999999999999999988877653 999999999
Q ss_pred hhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 173 EDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 173 ~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
..|+.||..|||..|+ ..++.|..-
T Consensus 338 ~SaQaAIqAMNGFQIG----MKRLKVQLK 362 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIG----MKRLKVQLK 362 (371)
T ss_pred hhHHHHHHHhcchhhh----hhhhhhhhc
Confidence 9999999999999998 777766644
No 41
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.81 E-value=1.4e-20 Score=157.11 Aligned_cols=172 Identities=22% Similarity=0.300 Sum_probs=141.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
+..+|||+--|+..+++.+|.+||+.+|+|.+|.++.+ +.++|.|||+|.+.+++..|+. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 45678888899999999999999999999999999654 6789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
.............. .+ +.-..+...|||+||..+++++.|+.+|+.||.|..+.+..+.
T Consensus 256 Eaeknr~a~~s~a~---~~------------------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 256 EAEKNRAANASPAL---QG------------------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS 314 (549)
T ss_pred HHHHHHHHhccccc---cc------------------cccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence 65533321111110 00 0111122339999999999999999999999999999999886
Q ss_pred CC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 161 ~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
.+ ||+||+|.+.++|..|+.+|||.++. |+.|.|-..
T Consensus 315 ~tG~skgfGfi~f~~~~~ar~a~e~lngfelA----Gr~ikV~~v 355 (549)
T KOG0147|consen 315 ETGRSKGFGFITFVNKEDARKALEQLNGFELA----GRLIKVSVV 355 (549)
T ss_pred ccccccCcceEEEecHHHHHHHHHHhccceec----CceEEEEEe
Confidence 33 69999999999999999999999998 888876543
No 42
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=2.5e-19 Score=144.45 Aligned_cols=167 Identities=18% Similarity=0.313 Sum_probs=137.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
|+..+.++|||++|+..++++.|++.|.+||+|.+|.++. ++.++||+||+|++++.+.++|. ...+.|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 4456889999999999999999999999999999999965 47889999999999999999998 6678899999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEE
Q 024269 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~ 157 (270)
+.+.+......... ......|||++||..++++++++.|.+||.|..+.++
T Consensus 80 k~av~r~~~~~~~~-----------------------------~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~ 130 (311)
T KOG4205|consen 80 KRAVSREDQTKVGR-----------------------------HLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIM 130 (311)
T ss_pred eeccCccccccccc-----------------------------ccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEe
Confidence 98876632221110 1135689999999999999999999999999998888
Q ss_pred eCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 158 RDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 158 ~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
.+... +|+||.|.+.+.+..++. .+-..+. +..+.|+.+.
T Consensus 131 ~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~----gk~vevkrA~ 174 (311)
T KOG4205|consen 131 YDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN----GKKVEVKRAI 174 (311)
T ss_pred ecccccccccceeeEeccccccceecc-cceeeec----CceeeEeecc
Confidence 87655 599999999998888876 4444444 6666666665
No 43
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.80 E-value=4.1e-18 Score=137.42 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=145.7
Q ss_pred CceEEEcCCCCC-CCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCC
Q 024269 6 SRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 ~~~l~v~nL~~~-~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~ 84 (270)
+..|.|.||... +|++-|..+|+.||+|..|+|.... +-.|.|+|.+...|+.|++.|+|..|.|++|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 688999999887 9999999999999999999996543 3679999999999999999999999999999999999775
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcE
Q 024269 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~ 164 (270)
...+........+...-+...--.-.-++...+....++..++++.|+|..+++++|+.+|..-|..........++..+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 44443322221111110000000000011122223345678999999999999999999999999887776666666679
Q ss_pred EEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 165 ~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
+++.+++.++|..|+..+|...+. ++..++|.+++
T Consensus 455 al~q~~sveeA~~ali~~hnh~lg---en~hlRvSFSk 489 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLG---ENHHLRVSFSK 489 (492)
T ss_pred eecccCChhHhhhhccccccccCC---CCceEEEEeec
Confidence 999999999999999999999887 24578887764
No 44
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.80 E-value=4.2e-18 Score=134.71 Aligned_cols=191 Identities=20% Similarity=0.208 Sum_probs=141.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEE--------EEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~--------~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
..++.|||.|||.++|.+++.++|++||.|.. |+|.. .|+.+|-|.|.|-..+++..|+..|++..|.|+
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~ 211 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGK 211 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCc
Confidence 35678999999999999999999999998755 55644 478899999999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCCCCCC----CC------CCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCC----CCC--
Q 024269 74 RLRVELAHGGSGRGPSSSDRR----GG------YGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPS----SAS-- 137 (270)
Q Consensus 74 ~l~v~~~~~~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~----~~~-- 137 (270)
.|+|+.|+-............ .. .....-++.+.. ..+.......+|.+.|+-. ..+
T Consensus 212 ~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~-------~~~sk~r~~~tVi~kn~Ftp~~~~~~~~ 284 (382)
T KOG1548|consen 212 KLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDR-------DDPSKARADRTVILKNMFTPEDFEKNPD 284 (382)
T ss_pred EEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCc-------cccccccCCcEEEeeecCCHHHhccCHH
Confidence 999999974421111000000 00 000000000000 0112233456888888742 222
Q ss_pred -----HHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCC
Q 024269 138 -----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 138 -----~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~ 205 (270)
+++|.+.+.+||.|..+.+....+.|.+.|.|.+.++|..|++.|+|..+. |+.|......+..
T Consensus 285 l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd----gRql~A~i~DG~t 353 (382)
T KOG1548|consen 285 LLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD----GRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeec----ceEEEEEEeCCcc
Confidence 456778899999999999998888899999999999999999999999999 9999888776544
No 45
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.79 E-value=1.3e-19 Score=145.15 Aligned_cols=181 Identities=18% Similarity=0.176 Sum_probs=116.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC------CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
.....|.|.||.+++|.++|+.||..+|+|.++.|+.+ +.....|||.|.+...+..|.. |.++.|-|+.|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 34458999999999999999999999999999999652 2345689999999999999999 5555555555554
Q ss_pred -EecCCCCCCCCC---CCCCCCCCCCCCCCC--CCCCCC-----CCC-----------CCCCCCCCCCcceEEecCCCCC
Q 024269 78 -ELAHGGSGRGPS---SSDRRGGYGGGGAGG--AGGAGA-----GAG-----------AGRFGISRHSEYRVIVRGLPSS 135 (270)
Q Consensus 78 -~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~-----~~~-----------~~~~~~~~~~~~~l~v~~l~~~ 135 (270)
-+.....+.... ........+...+++ .+.... .+. .+....+ ....+++|.+|+..
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kle-eirRt~~v~sl~~~ 162 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLE-EIRRTREVQSLISA 162 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhH-HHHhhhhhhcchhh
Confidence 444433221100 000000000000000 000000 000 0000001 11247999999999
Q ss_pred CCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccc
Q 024269 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~ 187 (270)
+...++.+.|..+|.|.+.++......-+|.++|........|+. ++|.++
T Consensus 163 ~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~ 213 (479)
T KOG4676|consen 163 AILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRER 213 (479)
T ss_pred hcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhh
Confidence 999999999999999999888776666688899987777777666 444443
No 46
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=2.6e-17 Score=127.84 Aligned_cols=81 Identities=33% Similarity=0.588 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEe---cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
.++=+||||+-|+.+++|..|+..|..||+|+.|.|+ .|++++|||||+|+++.+...|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 3677999999999999999999999999999999995 4689999999999999999999999999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
....
T Consensus 178 ERgR 181 (335)
T KOG0113|consen 178 ERGR 181 (335)
T ss_pred cccc
Confidence 8765
No 47
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=9.6e-19 Score=119.00 Aligned_cols=80 Identities=38% Similarity=0.562 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE---ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
+.++||||+||++.++|++|.+||+.||+|..|.| ..+..+.|||||+|.+.++|..||..++|..++.++|.|.|.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 57899999999999999999999999999999988 345577899999999999999999999999999999999987
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 644
No 48
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.77 E-value=7.4e-18 Score=124.19 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=73.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
.......|.|-||.+.++.++|..+|++||.|.+|.|+.+..+ |||||.|....+|+.|+++|+|..++ |+.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld----gRe 84 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD----GRE 84 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec----cce
Confidence 3445679999999999999999999999999999999998766 69999999999999999999999999 999
Q ss_pred eeeecCC
Q 024269 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|+.++
T Consensus 85 lrVq~ar 91 (256)
T KOG4207|consen 85 LRVQMAR 91 (256)
T ss_pred eeehhhh
Confidence 9999887
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.76 E-value=6.3e-17 Score=131.79 Aligned_cols=184 Identities=28% Similarity=0.437 Sum_probs=133.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHh-ccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~-~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
-.+.+||+|||+++...+|++||. +.|+|..|.+..+ ++++|+|.|||+++|.+++|++.||...|.|++|.|+-..
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999998 6899999999765 7999999999999999999999999999999999998765
Q ss_pred CCCCCCCCCCCCCC--CCCCC------------CCCCCCCCCCCCC----------------------------------
Q 024269 82 GGSGRGPSSSDRRG--GYGGG------------GAGGAGGAGAGAG---------------------------------- 113 (270)
Q Consensus 82 ~~~~~~~~~~~~~~--~~~~~------------~~~~~~~~~~~~~---------------------------------- 113 (270)
..+......--+.+ .+... .+++++....+..
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 53221111100000 00000 0000000000000
Q ss_pred --CCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCcccc
Q 024269 114 --AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 114 --~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
........+....+||.||.+.+....|.+.|...|.+..+.+--++.+ |++.++|.++-+|.+|+..+++.-+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 0000112233458899999999999999999999999999887766544 69999999999999999999875543
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=8.3e-17 Score=133.09 Aligned_cols=168 Identities=22% Similarity=0.253 Sum_probs=128.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.....|.+.+||.++|++||.+||+.|+ |..+.+..+ +++.|-|||+|.++++++.|++ .+...+..+-|.|..+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 3456788899999999999999999985 788877654 8999999999999999999999 888999999999988766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceE-EEEEeC--
Q 024269 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD-- 159 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~-- 159 (270)
.+..+....... ........|.+.+||+.++++||.++|+-.-.+.. +.++.+
T Consensus 86 ~e~d~~~~~~g~------------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r 141 (510)
T KOG4211|consen 86 AEADWVMRPGGP------------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR 141 (510)
T ss_pred ccccccccCCCC------------------------CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC
Confidence 533222111100 00023458999999999999999999998655544 334433
Q ss_pred -CCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 160 -SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 160 -~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
+.+|-|||.|++.+.|+.|+.. |...|. -+.|.|..+.
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~r-hre~iG----hRYIEvF~Ss 180 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALGR-HRENIG----HRYIEVFRSS 180 (510)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHhhc----cceEEeehhH
Confidence 3447999999999999999984 444555 6666666543
No 51
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.74 E-value=8e-18 Score=108.22 Aligned_cols=68 Identities=40% Similarity=0.764 Sum_probs=64.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEE
Q 024269 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (270)
|||+|||.++|+++|+++|++||.|..+.+.. ++..+++|||+|.+.++|+.|++.|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 467889999999999999999999999999999885
No 52
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.74 E-value=2e-17 Score=128.85 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=73.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
..++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|+.||. |||..|.|+.|.|.++...
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 36899999999999999999999999999999998877778999999999999999996 9999999999999998866
No 53
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.72 E-value=4.3e-17 Score=106.81 Aligned_cols=80 Identities=34% Similarity=0.445 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
+.++.|||.|||+++|.+++.++|.+||.|..|.|-.+...+|.|||.|++..+|..|++.|+|..+.++.|.|-+.++.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 56789999999999999999999999999999999666677999999999999999999999999999999999997755
No 54
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.72 E-value=7.5e-17 Score=140.90 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=100.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcc--CceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~--G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
..++|||+||+.++|+++|+++|+.| |.|..|.+. ++||||+|.+.++|++|++.|||..|.|+.|.|.++++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 46889999999999999999999999 999999876 57999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCce
Q 024269 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~ 152 (270)
....... .+..+.++. +...................++++.|+++..+++.+.++|..+|.+.
T Consensus 307 ~~~~~~~------~~~rg~gg~-~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYV------RYTRGTGGR-GKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCccccc------ccccccCCC-cccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 5221100 001100000 00000000011122334567899999999999999999999988754
No 55
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=1.8e-16 Score=131.72 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCC--eEEEEEe
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 79 (270)
..++|||+|||..+|+++|+++|++||.|+.|.|.. ++++++||||+|.+.++|++||+.||+..|.| ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 56889999999999999999999999998865 7999999
Q ss_pred cCCCC
Q 024269 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 88653
No 56
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=2.2e-16 Score=135.84 Aligned_cols=192 Identities=22% Similarity=0.308 Sum_probs=139.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
+..+.|+|+|||..+..++|..+|..||.|..+.|... -..|+|+|.++.+|.+|+..|+...+...+|++.|+...
T Consensus 383 rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~d 459 (725)
T KOG0110|consen 383 RSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPED 459 (725)
T ss_pred hhcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhh
Confidence 34578999999999999999999999999999955422 124999999999999999999999999999999988644
Q ss_pred CCCCCCCCCCCC-CCCCC----C----CCCCCCCCCCCC----CCCC--CCCCCCcceEEecCCCCCCCHHHHHHHHHHh
Q 024269 84 SGRGPSSSDRRG-GYGGG----G----AGGAGGAGAGAG----AGRF--GISRHSEYRVIVRGLPSSASWQDLKDHMRKA 148 (270)
Q Consensus 84 ~~~~~~~~~~~~-~~~~~----~----~~~~~~~~~~~~----~~~~--~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 148 (270)
.-.......... ..... . ...-+....... .... .......+.|||.||+..++.++|..+|...
T Consensus 460 vf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~ 539 (725)
T KOG0110|consen 460 VFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQ 539 (725)
T ss_pred hccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhc
Confidence 222110000000 00000 0 000000000000 0000 0111222349999999999999999999999
Q ss_pred CCceEEEEEeCCCC-------cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 149 GDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 149 g~i~~~~~~~~~~~-------g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
|.|..+.|...++. ||+||+|.++++|+.|++.|+|..++ |..|.++.+.
T Consensus 540 G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld----GH~l~lk~S~ 596 (725)
T KOG0110|consen 540 GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD----GHKLELKISE 596 (725)
T ss_pred CeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec----CceEEEEecc
Confidence 99999988776654 89999999999999999999999999 9999999887
No 57
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.71 E-value=1.3e-16 Score=122.31 Aligned_cols=80 Identities=24% Similarity=0.239 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
....+|||+||++.+|+++|+++|+.||+|.+|.|..++...++|||+|.++++|+.|+. |||..|.|++|.|.....+
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 456899999999999999999999999999999999888888999999999999999997 9999999999999988765
Q ss_pred C
Q 024269 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 82 ~ 82 (243)
T PLN03121 82 E 82 (243)
T ss_pred c
Confidence 3
No 58
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.68 E-value=2.1e-16 Score=119.61 Aligned_cols=80 Identities=36% Similarity=0.540 Sum_probs=75.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE---ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
+++++|-|.||+.++++++|.+||..||.|..|+| +.||.++|||||.|.+.++|++|+..|||.=++.-.|.|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 57789999999999999999999999999999999 457899999999999999999999999999999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 875
No 59
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=4.6e-18 Score=122.80 Aligned_cols=81 Identities=27% Similarity=0.470 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++..|||+|||+.+|+.||.-+|++||+|++|.++. ||+++||||+.|+++.+...|+..|||..|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3678999999999999999999999999999999954 6899999999999999999999999999999999999998
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
..+.
T Consensus 113 ~~Yk 116 (219)
T KOG0126|consen 113 SNYK 116 (219)
T ss_pred cccc
Confidence 8773
No 60
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=3.4e-16 Score=100.53 Aligned_cols=68 Identities=29% Similarity=0.605 Sum_probs=61.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEE
Q 024269 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (270)
|||+|||+.+++++|.++|+.||.|..+.+... +.++++|||+|.++++|..|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999654 56789999999999999999999999999999874
No 61
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=2.7e-16 Score=124.92 Aligned_cols=81 Identities=25% Similarity=0.392 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.|.+.|||..|++.+|++||..+|+.||+|..|.++. |+.+..||||+|++.++|++|.-+|++..|+++.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 6889999999999999999999999999999999954 6888999999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
+...
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 8663
No 62
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.62 E-value=1.9e-15 Score=128.07 Aligned_cols=183 Identities=20% Similarity=0.298 Sum_probs=131.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
..+.|||++||..++++++.++...||.+..+.+.. ++.++||||++|.++.....|+..|||+.++++.|.|+.+-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457899999999999999999999999999988844 46899999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCC--CCCC-CH-------HHHHHHHHHhCCc
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGL--PSSA-SW-------QDLKDHMRKAGDV 151 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l--~~~~-~~-------~~l~~~f~~~g~i 151 (270)
................-.+ -..........+...|++.|+ |..+ .+ ++++..|.+||.|
T Consensus 368 ~g~~~~~~~~~~~~~~~~~-----------i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v 436 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPG-----------IPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAV 436 (500)
T ss_pred ccchhccccCCcccccccc-----------chhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCce
Confidence 6533222111100000000 000001122233344444442 1111 11 3456677889999
Q ss_pred eEEEEEeC-CC------CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 152 CFAEVSRD-SE------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~-~~------~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
..|.+..+ .. .|..||+|.+.++++.|+++|+|.++. ++.+...+..
T Consensus 437 ~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~----nRtVvtsYyd 490 (500)
T KOG0120|consen 437 RSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA----NRTVVASYYD 490 (500)
T ss_pred eEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC----CcEEEEEecC
Confidence 99999887 22 269999999999999999999999999 8877665543
No 63
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.62 E-value=1.6e-15 Score=119.39 Aligned_cols=80 Identities=26% Similarity=0.472 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec-CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
..-+.|+|.|||+..-+-||+.+|.+||.|.+|.|+. +..+|||+||+|++.+||++|-+.|||..|.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 3457899999999999999999999999999999966 468899999999999999999999999999999999998875
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 64
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=1.7e-14 Score=118.10 Aligned_cols=145 Identities=27% Similarity=0.454 Sum_probs=109.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.++|||+|||..+|+++|.++|..||.|..+.+.. ++.++|+|||+|.++++|..|+..++|..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999998854 478999999999999999999999999999999999999764
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC
Q 024269 83 -GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 161 (270)
................. ...............+++.+++..++..++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFAK------------KLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhhc------------cccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 11111111000000000 00111123344567899999999999999999999999997666655543
Q ss_pred C
Q 024269 162 G 162 (270)
Q Consensus 162 ~ 162 (270)
.
T Consensus 263 ~ 263 (306)
T COG0724 263 G 263 (306)
T ss_pred C
Confidence 3
No 65
>smart00362 RRM_2 RNA recognition motif.
Probab=99.61 E-value=6.9e-15 Score=94.58 Aligned_cols=71 Identities=41% Similarity=0.739 Sum_probs=65.4
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
+|+|+|||..+++++|.++|..||+|..+.+..+ +.++++|||+|.+.++|+.|+..+++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999988654 5678999999999999999999999999999999873
No 66
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=2.9e-14 Score=104.05 Aligned_cols=84 Identities=26% Similarity=0.391 Sum_probs=74.9
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
+.......+|||.|||..+++++|+++|.+||.|..+.++.+..+ +||||+|.+.++|+.|++.|++..+. +
T Consensus 28 ~~~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~----G 103 (144)
T PLN03134 28 GSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN----G 103 (144)
T ss_pred ccccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 444556789999999999999999999999999999999887643 69999999999999999999999999 9
Q ss_pred ceeeeecCCCCC
Q 024269 194 GRITVKRYDRSP 205 (270)
Q Consensus 194 ~~i~v~~~~~~~ 205 (270)
+.|.|+.+...+
T Consensus 104 r~l~V~~a~~~~ 115 (144)
T PLN03134 104 RHIRVNPANDRP 115 (144)
T ss_pred EEEEEEeCCcCC
Confidence 999999886543
No 67
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2e-15 Score=103.82 Aligned_cols=78 Identities=26% Similarity=0.440 Sum_probs=72.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.-.|||+++...+|+++|.+.|..||+|++|.++. +|-.+|||+|+|++.++|++|+..|||..|.|++|.|.|+..
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv 151 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFV 151 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEe
Confidence 34689999999999999999999999999999954 678899999999999999999999999999999999999976
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 152 ~ 152 (170)
T KOG0130|consen 152 K 152 (170)
T ss_pred c
Confidence 5
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.6e-15 Score=113.25 Aligned_cols=76 Identities=25% Similarity=0.372 Sum_probs=69.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEe---cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
-++|||+||+..++.+.|++.|++||+|++..|+ .+++++||+||+|.|.++|.+|++ -.+-.|+|++-.|.++--
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCcccccccccchhhh
Confidence 4789999999999999999999999999999884 468999999999999999999999 445789999999998865
No 69
>PLN03213 repressor of silencing 3; Provisional
Probab=99.58 E-value=7.8e-15 Score=121.57 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=70.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccH--HHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA--RDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~--~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.....||||||++.+|+++|..+|..||.|..|.|+.+.. +|||||+|.+. .++.+|+..|||..|.|+.|+|..|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 3457899999999999999999999999999999975433 99999999987 78999999999999999999999996
Q ss_pred C
Q 024269 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 3
No 70
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.55 E-value=5e-13 Score=108.40 Aligned_cols=190 Identities=18% Similarity=0.232 Sum_probs=131.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC-C-eEEEEEecCCCCC
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-G-CRLRVELAHGGSG 85 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g-~~l~v~~~~~~~~ 85 (270)
.++|.|+-+.+|-|-|.++|+.||.|..|.-. +....-.|.|+|.+++.|+.|...|+|..|- | ..|+|++++-...
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF-~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITF-TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEE-ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 46788999999999999999999999887442 2233446999999999999999999998873 4 5777777753311
Q ss_pred CC----------CCCCCCCC------------CCCCCCCCCCC-----CCCCCCCCCCCCCCCC-CcceEEecCCC-CCC
Q 024269 86 RG----------PSSSDRRG------------GYGGGGAGGAG-----GAGAGAGAGRFGISRH-SEYRVIVRGLP-SSA 136 (270)
Q Consensus 86 ~~----------~~~~~~~~------------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~v~~l~-~~~ 136 (270)
-- .......+ .+......++. ................ ....|.|.||. ..+
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~V 310 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAV 310 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhcc
Confidence 00 00000000 00000000000 0000000111111111 15678888875 678
Q ss_pred CHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 137 SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 137 ~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
|.+.|.-+|.-||.|..++|..++.. .|+|+|.+...|+-|+..|+|..+. |+.|+|-.++.
T Consensus 311 T~d~LftlFgvYGdVqRVkil~nkkd-~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrvt~SKH 372 (492)
T KOG1190|consen 311 TPDVLFTLFGVYGDVQRVKILYNKKD-NALIQMSDGQQAQLAMEHLEGHKLY----GKKLRVTLSKH 372 (492)
T ss_pred chhHHHHHHhhhcceEEEEeeecCCc-ceeeeecchhHHHHHHHHhhcceec----CceEEEeeccC
Confidence 99999999999999999999988764 8999999999999999999999999 89999988873
No 71
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.54 E-value=2.2e-12 Score=103.62 Aligned_cols=192 Identities=16% Similarity=0.162 Sum_probs=137.1
Q ss_pred CCCceEEEcCCCC--CCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCcc--CCeEEEEEe
Q 024269 4 RFSRTIYVGNLPS--DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~--~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~ 79 (270)
.+++.|.++=|++ .+|.+-|.++...+|+|..|.|.+- .--.|.|||++.+.|++|.+.|||..| +=..|+|+|
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 5677777776655 4999999999999999999988532 234799999999999999999999887 347899999
Q ss_pred cCCCCCC-----CCCC---------------C----CCCCCCCCC----CCCCCCCCCC-----CC--------------
Q 024269 80 AHGGSGR-----GPSS---------------S----DRRGGYGGG----GAGGAGGAGA-----GA-------------- 112 (270)
Q Consensus 80 ~~~~~~~-----~~~~---------------~----~~~~~~~~~----~~~~~~~~~~-----~~-------------- 112 (270)
+++.... ...+ . .+...+.+. .+++.++... +.
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 9866310 0000 0 000000000 0110110000 00
Q ss_pred CCCCCCCCCCCcceEEecCCCC-CCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCcc
Q 024269 113 GAGRFGISRHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 113 ~~~~~~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 191 (270)
.+...+....++..+.|.+|.. .++-+.|..+|..||.|+.+++++.+. |.|.|++.+..+.+.|+..|++..+-
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-gtamVemgd~~aver~v~hLnn~~lf--- 351 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-GTAMVEMGDAYAVERAVTHLNNIPLF--- 351 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-ceeEEEcCcHHHHHHHHHHhccCccc---
Confidence 0001112334678999999984 568889999999999999999999876 49999999999999999999999998
Q ss_pred CCceeeeecCC
Q 024269 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|.+|.+..++
T Consensus 352 -G~kl~v~~Sk 361 (494)
T KOG1456|consen 352 -GGKLNVCVSK 361 (494)
T ss_pred -cceEEEeecc
Confidence 8888877665
No 72
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.54 E-value=1.6e-13 Score=106.96 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=71.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
++-.||||.-|++.+++..|+..|+.||+|+.|.++.+.-+ |||||+|++..+...|.++.+|.+|+ ++.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id----grri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID----GRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec----CcEEE
Confidence 55679999999999999999999999999999999988544 69999999999999999999999999 88888
Q ss_pred eecCC
Q 024269 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|+...
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 88765
No 73
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.54 E-value=1.4e-12 Score=104.66 Aligned_cols=193 Identities=14% Similarity=0.103 Sum_probs=139.2
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~-~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.+.+.++|.+|... ++.+.|..+|..||.|..|+++++. .|.|.||+.+..+.+.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46789999999887 8889999999999999999998763 57899999999999999999999999999999999886
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCC-ceEEEEEe
Q 024269 83 GSGRGPSSSDR---RGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSR 158 (270)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~ 158 (270)
.-......-.- ...+..- .+.....-..+..+.......+...|+..|.|..+|++.|.++|...+. ...+++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdy-s~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDY-SGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred cccccCCceecCCCCcchhhc-ccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 53222111000 0000000 0000000111111222233456789999999999999999999988763 44555554
Q ss_pred CCCC--cEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 159 DSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 159 ~~~~--g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
.+.. --+.++|++.++|.+|+..+|...+.++.+.-...++
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilK 484 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILK 484 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeee
Confidence 4432 3789999999999999999999999866655554444
No 74
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.53 E-value=6.9e-14 Score=85.40 Aligned_cols=56 Identities=34% Similarity=0.584 Sum_probs=50.8
Q ss_pred HHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 23 VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 23 l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
|.++|++||+|..+.+.... .++|||+|.+.++|..|+..|||..|.|++|.|+|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68899999999999997553 599999999999999999999999999999999985
No 75
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=1.1e-13 Score=89.32 Aligned_cols=72 Identities=38% Similarity=0.741 Sum_probs=66.1
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCC--CCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
+|+|+|||..+++++|.++|..||.|..+.+..+. .+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996543 5689999999999999999999999999999999864
No 76
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.5e-14 Score=107.94 Aligned_cols=83 Identities=33% Similarity=0.522 Sum_probs=76.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
...++|||++|...+++.-|...|-.||.|.+|.+.. +++.+|||||+|+..|||.+||..||+..+.|+.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 4678999999999999999999999999999999955 4688999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 024269 81 HGGSGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
++....
T Consensus 88 kP~kik 93 (298)
T KOG0111|consen 88 KPEKIK 93 (298)
T ss_pred CCcccc
Confidence 987543
No 77
>smart00360 RRM RNA recognition motif.
Probab=99.52 E-value=7.1e-14 Score=89.48 Aligned_cols=68 Identities=41% Similarity=0.732 Sum_probs=62.4
Q ss_pred EcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 11 VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 11 v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
|+|||..+++++|+++|..||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999854 35678999999999999999999999999999999873
No 78
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=2.3e-12 Score=103.24 Aligned_cols=77 Identities=25% Similarity=0.455 Sum_probs=70.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
..|||..+.++++++||+..|+.||+|+.|.+.. ....+||+||+|.+..+...|+..||=+.++|+.|+|..+-.+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 5799999999999999999999999999999954 3467999999999999999999999999999999999877544
No 79
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=8.7e-14 Score=117.40 Aligned_cols=79 Identities=32% Similarity=0.579 Sum_probs=74.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
+.|||||||+++++++|..+|+..|.|..++++. +|+++|||||+|.+.++|..|++.|||..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999955 5899999999999999999999999999999999999999876
Q ss_pred CC
Q 024269 84 SG 85 (270)
Q Consensus 84 ~~ 85 (270)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 80
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.47 E-value=6.4e-14 Score=112.63 Aligned_cols=189 Identities=19% Similarity=0.193 Sum_probs=126.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcc----CceEEE-EEec-CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKY----GRILDI-ELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~----G~i~~~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
..-.|-+++||+++++.|+.++|..- |.+..| .+.. +++..|-|||.|..+++|+.|+. -|...++-+-|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 34567788999999999999999732 233343 4444 78999999999999999999998 56666666655554
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCC-ceE--EE
Q 024269 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCF--AE 155 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~--~~ 155 (270)
.+...+-..--.........+ +-+....+..+...-++.....+|.+.+||+..+.++|.++|..|.. |.. ++
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~----~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVH 314 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIP----GLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVH 314 (508)
T ss_pred HHhHHHHHHHHHhhccccccC----CCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeE
Confidence 332110000000000000000 00111111123344455556789999999999999999999999863 444 66
Q ss_pred EEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 156 VSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 156 ~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
+.-+.. .|-|||+|.+.+.|..|..+.++.... .+.|.|-...
T Consensus 315 mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk----~RYiEvfp~S 360 (508)
T KOG1365|consen 315 MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMK----SRYIEVFPCS 360 (508)
T ss_pred EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc----cceEEEeecc
Confidence 665543 379999999999999999999988887 7888877654
No 81
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.46 E-value=8.3e-12 Score=102.31 Aligned_cols=74 Identities=28% Similarity=0.561 Sum_probs=65.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
...++|+|.|||.+.|++-|++-|..||.|.+++|+..-.. .+.|.|.++++|+.|+..|++..+. ++.|.|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks-kGVVrF~s~edAEra~a~Mngs~l~----Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS-KGVVRFFSPEDAERACALMNGSRLD----GRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc-cceEEecCHHHHHHHHHHhccCccc----Cceeeeee
Confidence 44568999999999999999999999999999998544322 5689999999999999999999999 99998875
No 82
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.45 E-value=4.2e-13 Score=85.98 Aligned_cols=67 Identities=25% Similarity=0.491 Sum_probs=60.4
Q ss_pred EEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
|||+|||..+++++|.++|..||.+..+.+..+..+ ++|||+|.+.++|+.|++.|++..+. ++.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~----~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN----GRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC----ccCcC
Confidence 799999999999999999999999999999886222 59999999999999999999999998 66653
No 83
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=7.9e-13 Score=91.17 Aligned_cols=81 Identities=19% Similarity=0.307 Sum_probs=73.9
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
++....++.|||.++...+++++|.+.|..||+|.++++.-+..+ |||+|+|++.++|++|+..+||..+- +
T Consensus 66 PqrSVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll----~ 141 (170)
T KOG0130|consen 66 PQRSVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL----G 141 (170)
T ss_pred CccceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh----C
Confidence 445567899999999999999999999999999999999888776 49999999999999999999999999 8
Q ss_pred ceeeeecCC
Q 024269 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
..|.|+++=
T Consensus 142 q~v~VDw~F 150 (170)
T KOG0130|consen 142 QNVSVDWCF 150 (170)
T ss_pred CceeEEEEE
Confidence 899888764
No 84
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.42 E-value=3.1e-13 Score=105.05 Aligned_cols=92 Identities=34% Similarity=0.598 Sum_probs=82.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
..+++|+|+||.+.++.++|+..|.+||+|++|+|. ++|+||-|...++|..|+..|||..|.|++|+|+++...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 468999999999999999999999999999999998 679999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCCCC
Q 024269 84 SGRGPSSSDRRGGYGGG 100 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~ 100 (270)
-...+.+....+++..+
T Consensus 151 lrtapgmgDq~~cyrcG 167 (346)
T KOG0109|consen 151 LRTAPGMGDQSGCYRCG 167 (346)
T ss_pred cccCCCCCCHHHheecc
Confidence 66666666655555544
No 85
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=1.2e-12 Score=103.38 Aligned_cols=79 Identities=27% Similarity=0.343 Sum_probs=73.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC--cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
......+|+|.|+|....+.||+.+|.+||+|.+++|+.+..+ ||+||+|+++++|++|.++|||..+. |++|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE----GRkIE 167 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE----GRKIE 167 (376)
T ss_pred CCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee----ceEEE
Confidence 3455679999999999999999999999999999999988765 79999999999999999999999999 99999
Q ss_pred eecCC
Q 024269 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..+.
T Consensus 168 Vn~AT 172 (376)
T KOG0125|consen 168 VNNAT 172 (376)
T ss_pred Eeccc
Confidence 99876
No 86
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=2.7e-12 Score=93.44 Aligned_cols=80 Identities=21% Similarity=0.328 Sum_probs=72.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC-CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
...+|||+|||..+.+.+|+++|.+||.|..|.+...+. ..||||+|+++.+|+.|+..-+|..++ ++.|+|+++
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd----g~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD----GCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC----cceEEEEec
Confidence 347899999999999999999999999999999876554 259999999999999999999999999 999999999
Q ss_pred CCCCC
Q 024269 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
...++
T Consensus 81 rggr~ 85 (241)
T KOG0105|consen 81 RGGRS 85 (241)
T ss_pred cCCCc
Confidence 87653
No 87
>smart00361 RRM_1 RNA recognition motif.
Probab=99.40 E-value=1.7e-12 Score=82.99 Aligned_cols=58 Identities=26% Similarity=0.438 Sum_probs=51.5
Q ss_pred HHHHHHHHh----ccCceEEEE-Eec---C--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 20 EYEVEDLFY----KYGRILDIE-LKI---P--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 20 ~~~l~~~F~----~~G~i~~~~-~~~---~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
+++|+++|+ .||.|..|. +.. + +.++|+|||+|.+.++|..|+..|||..|.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999985 422 3 778999999999999999999999999999999986
No 88
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.38 E-value=3e-12 Score=100.13 Aligned_cols=75 Identities=19% Similarity=0.337 Sum_probs=68.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC-CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
..+|||+|||+.+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|+.|+. |+|..+. ++.|.|..+.
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~----gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV----DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC----CceEEEEecc
Confidence 46899999999999999999999999999999988864 4799999999999999995 9999999 9999999875
Q ss_pred C
Q 024269 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 79 ~ 79 (260)
T PLN03120 79 D 79 (260)
T ss_pred C
Confidence 3
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=4.3e-12 Score=107.93 Aligned_cols=179 Identities=22% Similarity=0.346 Sum_probs=137.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcc-----------C-ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----------G-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~-----------G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
...+.++|+++|+.++++.+..+|..- | .|..+.+.. .+++|||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~---~~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL---EKNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc---cccceeEEecCCCchhhhhc-ccchhhC
Confidence 567889999999999999999999753 2 366666653 37899999999999999999 9999999
Q ss_pred CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCc
Q 024269 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (270)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i 151 (270)
|.++++.-...+.........-.. .+.................++|++||..+++.++.++...||.+
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~------------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQ------------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred CCCceecccccccCCccchhhhcc------------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 999998665544222211111000 00000111112334556799999999999999999999999999
Q ss_pred eEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 152 CFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
....+..+... ||||.+|.++.....|+..|||..+. +..+.|..+-
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvvq~A~ 367 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVVQRAI 367 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc----CceeEeehhh
Confidence 99888777653 59999999999999999999999998 7888877764
No 90
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.34 E-value=5e-12 Score=86.49 Aligned_cols=77 Identities=18% Similarity=0.230 Sum_probs=70.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
...++|||+||...+++++|-++|+++|+|..|.+--+..+ |||||+|.+.++|+.|++-+++..++ .+.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd----dr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD----DRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc----cccee
Confidence 35689999999999999999999999999999887666544 69999999999999999999999999 99999
Q ss_pred eecCC
Q 024269 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
++...
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 98876
No 91
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=1.7e-12 Score=114.83 Aligned_cols=158 Identities=21% Similarity=0.368 Sum_probs=133.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.-++|||++||+..+++.+|+..|..+|.|..|.|+.+ +....||||.|.+...+-.|...+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 45789999999999999999999999999999999654 3445689999999999999999899888865565555443
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 161 (270)
. .....+.++|++|+..+....|..+|..||.|..|.+....
T Consensus 450 ~-------------------------------------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq- 491 (975)
T KOG0112|consen 450 P-------------------------------------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ- 491 (975)
T ss_pred c-------------------------------------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC-
Confidence 2 12344689999999999999999999999999998886654
Q ss_pred CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 162 ~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
-|++|.|++...|+.|+..|.+..++++ .+.+.|.++.
T Consensus 492 -~yayi~yes~~~aq~a~~~~rgap~G~P--~~r~rvdla~ 529 (975)
T KOG0112|consen 492 -PYAYIQYESPPAAQAATHDMRGAPLGGP--PRRLRVDLAS 529 (975)
T ss_pred -cceeeecccCccchhhHHHHhcCcCCCC--Cccccccccc
Confidence 3999999999999999999999999855 4557888776
No 92
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=8.7e-11 Score=98.52 Aligned_cols=166 Identities=22% Similarity=0.317 Sum_probs=114.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE-ec--C--CCCCc---eEEEEEccHHHHHHHHHhcCCCccCCeEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL-KI--P--PRPPC---YCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~-~~--~--~~~~g---~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (270)
.-++.||||+||.+++|++|...|..||.+.-=+- +. . -.++| |+|+.|+++.++..-+..+.- ....+
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 45789999999999999999999999997632111 11 1 13456 999999999999887765543 33444
Q ss_pred EEEecCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHH-HhCC
Q 024269 76 RVELAHGGSGRGP----SSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMR-KAGD 150 (270)
Q Consensus 76 ~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~ 150 (270)
.+..+.+.-.... .+......+ -.....+-++..||||++||..++.++|..+|+ .||.
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~f----------------v~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGg 397 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDF----------------VLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGG 397 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchh----------------hhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCc
Confidence 4444433311110 000000001 111244556778999999999999999999999 6999
Q ss_pred ceEEEEEeCCCC----cEEEEEecChhhHHHHHHH----hCCcccc
Q 024269 151 VCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRK----LDDTEFR 188 (270)
Q Consensus 151 i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~----l~~~~~~ 188 (270)
|..+-|-.|+.- |-+-|+|.+...=.+||.+ ++...++
T Consensus 398 V~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~ 443 (520)
T KOG0129|consen 398 VLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID 443 (520)
T ss_pred eEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc
Confidence 999999888432 6899999999888888874 4555544
No 93
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=2.1e-12 Score=96.49 Aligned_cols=140 Identities=20% Similarity=0.311 Sum_probs=112.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+..+||||+||...++++-|.++|-+.|+|..|.|.. +++.+ ||||.|+++-++.-|++++||..+.+..|.|++-.
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 6789999999999999999999999999999999954 45656 99999999999999999999999999999987644
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 161 (270)
.... .-|...++.+.+.+.|+..|.+..+.+..+.+
T Consensus 86 G~sh--------------------------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 86 GNSH--------------------------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDND 121 (267)
T ss_pred CCCc--------------------------------------------chhhhhcchhhheeeecccCCCCCcccccccc
Confidence 2200 01334566777778888888888877776655
Q ss_pred C---cEEEEEecChhhHHHHHHHhCCcccc
Q 024269 162 G---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 ~---g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
+ .+.|+.+.-......++....+.+..
T Consensus 122 ~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 122 GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 3 48888888777777888777665553
No 94
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.31 E-value=6.7e-12 Score=109.47 Aligned_cols=77 Identities=27% Similarity=0.513 Sum_probs=72.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~ 84 (270)
-++||||++|+.++++.||.++|+.||+|..|.++. ++++|||.+..-.+|.+|+.+|++..+.++.|+|.|+....
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G 496 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKG 496 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCC
Confidence 379999999999999999999999999999999974 48999999999999999999999999999999999998763
No 95
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.31 E-value=2.3e-11 Score=80.09 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=71.9
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.+......|||.|||..+|.++.-++|.+||.|..+.+-..+.+ |.|||.|++..+|..|+.+|+|..+. ++.+.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~----~ryl~ 88 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD----NRYLV 88 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC----CceEE
Confidence 44456679999999999999999999999999999999877766 79999999999999999999999998 88888
Q ss_pred eecCC
Q 024269 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|-...
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 77654
No 96
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.30 E-value=1.1e-11 Score=79.43 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=58.7
Q ss_pred EEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
|+|+|||..+++++|.++|..+|.|..+.+..++. .++|||+|.+.++|..|++.+++..+. |+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~----g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID----GRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC----CEEc
Confidence 78999999999999999999999999999998865 359999999999999999999999988 7665
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.28 E-value=2.6e-11 Score=93.37 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=68.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
.+++|+|+||++.+++++|+++|+.||.|..+.++.+... ++|||+|.+++.|+.|+ .|+|..|. +..|.|..+
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~----d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV----DQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC----CceEEEEeC
Confidence 4589999999999999999999999999999999988654 59999999999999999 59999998 888888876
Q ss_pred C
Q 024269 202 D 202 (270)
Q Consensus 202 ~ 202 (270)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 98
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.27 E-value=4.8e-12 Score=97.38 Aligned_cols=81 Identities=25% Similarity=0.554 Sum_probs=75.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
+.+.|+|||..||.+..+.||.++|-.||.|+..++.. |+.++.|+||.|.++.+|+.||..|||+.|+=++|+|++
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 36789999999999999999999999999999988844 578999999999999999999999999999999999998
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
.+++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 7765
No 99
>PLN03213 repressor of silencing 3; Provisional
Probab=99.27 E-value=2.7e-11 Score=100.87 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=70.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecCh--hhHHHHHHHhCCccccCccCCceeeeec
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNP--EDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~--~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
.+.+|||+||++.+++++|..+|..||.|..+.|++....|||||+|... .++.+|+..|+|.... |+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK----GR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK----GGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec----CceeEEee
Confidence 45799999999999999999999999999999999777778999999988 6899999999999988 99999999
Q ss_pred CC
Q 024269 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
++
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 87
No 100
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.27 E-value=1.2e-10 Score=88.79 Aligned_cols=81 Identities=22% Similarity=0.293 Sum_probs=73.5
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
......++|.|.||+.++++++|+++|.+||.|..+.+..++.+ |||||.|.+.++|++|++.|+|.-++ .-
T Consensus 184 R~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd----~L 259 (270)
T KOG0122|consen 184 RERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD----NL 259 (270)
T ss_pred ccCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc----eE
Confidence 35567789999999999999999999999999999999999887 49999999999999999999999988 77
Q ss_pred eeeeecCCC
Q 024269 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.|+|+.++.
T Consensus 260 ILrvEwskP 268 (270)
T KOG0122|consen 260 ILRVEWSKP 268 (270)
T ss_pred EEEEEecCC
Confidence 788887754
No 101
>smart00362 RRM_2 RNA recognition motif.
Probab=99.24 E-value=8.2e-11 Score=75.26 Aligned_cols=69 Identities=25% Similarity=0.442 Sum_probs=61.8
Q ss_pred eEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC--CCcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
+|+|.|||..+++++|.++|..||.+..+.+..+. ..++|||+|.+.++|+.|++.+++..+. +..|.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~----~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG----GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC----CEEEee
Confidence 48999999999999999999999999999888765 3369999999999999999999998887 777665
No 102
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.22 E-value=4.9e-11 Score=88.68 Aligned_cols=79 Identities=24% Similarity=0.377 Sum_probs=71.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcc-CceEEEEE---ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~-G~i~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
....++|..||.-+-+.++..+|.+| |.|..+.+ +.||.++|||||+|++++.|.-|-+.||+..|.|+.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999988 77778877 568999999999999999999999999999999999999987
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 655
No 103
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.22 E-value=6.2e-10 Score=86.89 Aligned_cols=79 Identities=25% Similarity=0.469 Sum_probs=72.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
++.|+|.|||..++++||++||..||.+..+.+.+ .+.+.|.|-|.|...+||..||+.+||+.++|++|.+......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 47899999999999999999999999888888855 4788999999999999999999999999999999999888765
Q ss_pred C
Q 024269 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 104
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.19 E-value=5.6e-11 Score=86.51 Aligned_cols=80 Identities=19% Similarity=0.364 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEE-EE---ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-EL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~-~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
+.+..|||+||.+++.+..|.+.|+.||.+... .+ ..++.++++|||.|.+.+.+.+|++.+||+.+..++|.|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 456789999999999999999999999987652 22 34578999999999999999999999999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 174 a~k~ 177 (203)
T KOG0131|consen 174 AFKK 177 (203)
T ss_pred EEec
Confidence 9865
No 105
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.17 E-value=4.3e-10 Score=93.84 Aligned_cols=175 Identities=27% Similarity=0.367 Sum_probs=112.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEE-EEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
....|-+.+||+.||++||.+||+..-.|.. |.+.. -+++.|-|||+|+++++|+.|+. -|...|+.+-|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 5678999999999999999999997755544 33433 35788999999999999999999 67788888999987763
Q ss_pred CCC---------CCC--CCCCCC----CC--CCCCCCC-------------CCCC------------CCCCC--------
Q 024269 82 GGS---------GRG--PSSSDR----RG--GYGGGGA-------------GGAG------------GAGAG-------- 111 (270)
Q Consensus 82 ~~~---------~~~--~~~~~~----~~--~~~~~~~-------------~~~~------------~~~~~-------- 111 (270)
... ... +..... +. .+..... +..+ ..+..
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 110 000 000000 00 0000000 0000 00000
Q ss_pred --------CCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC---CcEEEEEecChhhHHHHHH
Q 024269 112 --------AGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIR 180 (270)
Q Consensus 112 --------~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~g~~~v~f~~~~~a~~a~~ 180 (270)
+.+.....-...+..++..+||...++.++..+|+..-.+ .+++...++ +|-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 0000011111223678889999999999999999886544 555555443 3699999999999999987
Q ss_pred H
Q 024269 181 K 181 (270)
Q Consensus 181 ~ 181 (270)
+
T Consensus 340 k 340 (510)
T KOG4211|consen 340 K 340 (510)
T ss_pred c
Confidence 4
No 106
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.16 E-value=5.6e-10 Score=94.04 Aligned_cols=78 Identities=35% Similarity=0.581 Sum_probs=67.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEe--c-CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--I-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~--~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
...+|||.|||+++++++|+++|..||.|+...|. . .++..+||||+|.+.++++.|+. .+...|++++|.|+--+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 34569999999999999999999999999998772 2 24444999999999999999999 66899999999999877
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 366 ~~ 367 (419)
T KOG0116|consen 366 PG 367 (419)
T ss_pred cc
Confidence 64
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.12 E-value=7.6e-10 Score=71.08 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=63.3
Q ss_pred eEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
+|+|.|||..+++++|.++|..+|.+..+.+..+.. .++|||+|.+.++|..|+..+++..+. +..+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~----~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG----GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEe
Confidence 488999999999999999999999999999988764 469999999999999999999999887 7777664
No 108
>smart00360 RRM RNA recognition motif.
Probab=99.11 E-value=5.5e-10 Score=71.07 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=59.1
Q ss_pred ecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 129 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
|.|||..+++++|+++|..||.|..+.+..+.. .++|||+|.+.++|..|++.+++..+. +..+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~----~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD----GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC----CcEEEe
Confidence 578999999999999999999999999888765 369999999999999999999998887 777665
No 109
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=4.6e-10 Score=89.71 Aligned_cols=77 Identities=27% Similarity=0.502 Sum_probs=68.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHH-hcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR-GRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-~l~g~~~~g~~l~v~~~~~ 82 (270)
...++|||+||...+++.+|++.|.+||+|..|.+... +++|||+|.+-++|+.|.+ .+|...|+|.+|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 45689999999999999999999999999999998643 6799999999999999865 4576888999999999887
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 303 ~ 303 (377)
T KOG0153|consen 303 K 303 (377)
T ss_pred c
Confidence 3
No 110
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.08 E-value=4.2e-10 Score=68.51 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=49.7
Q ss_pred HHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 141 LKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 141 l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
|.++|++||.|..+.+..+. .++|||+|.+.++|..|++.||+..+. |+.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 67899999999999998776 579999999999999999999999998 899988753
No 111
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.06 E-value=4.1e-10 Score=95.50 Aligned_cols=79 Identities=27% Similarity=0.536 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
-.++|||.+|...+-..||+.||++||+|+..+++. ++..++|+||++.+.++|.++|..|+.+.|+|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 357899999999999999999999999999999854 35668999999999999999999999999999999999997
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 65
No 112
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.06 E-value=2.9e-10 Score=96.27 Aligned_cols=71 Identities=31% Similarity=0.467 Sum_probs=65.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (270)
-++.+|+|-|||..+++++|..+|+.||+|..|. .+....+.+||+|.|..+|++|++.|++..|.|+.|.
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir--~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIR--ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhh--cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3678999999999999999999999999999954 4455689999999999999999999999999999988
No 113
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=1.2e-09 Score=87.46 Aligned_cols=79 Identities=24% Similarity=0.311 Sum_probs=74.2
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCc----EEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g----~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
..++.+.|||..|.+-++.++|.-+|+.||.|..|.++++..+| ||||+|++.+++++|.-+|.+..|+ .+.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID----DrR 310 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID----DRR 310 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec----cce
Confidence 34667899999999999999999999999999999999998886 9999999999999999999999999 999
Q ss_pred eeeecCC
Q 024269 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|+++.
T Consensus 311 IHVDFSQ 317 (479)
T KOG0415|consen 311 IHVDFSQ 317 (479)
T ss_pred EEeehhh
Confidence 9999876
No 114
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=6.2e-11 Score=86.22 Aligned_cols=75 Identities=16% Similarity=0.264 Sum_probs=70.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
..-|||+|||+.+|+-+|.-+|++||.|.+|.++++..+ ||||+.|++.....-|+..|||..+. |+.|+|+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~----gRtirVD 110 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL----GRTIRVD 110 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec----ceeEEee
Confidence 357999999999999999999999999999999999887 49999999999999999999999999 9999998
Q ss_pred cCC
Q 024269 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
...
T Consensus 111 Hv~ 113 (219)
T KOG0126|consen 111 HVS 113 (219)
T ss_pred ecc
Confidence 764
No 115
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=98.97 E-value=2.2e-09 Score=81.58 Aligned_cols=75 Identities=17% Similarity=0.253 Sum_probs=63.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
.-++|||++|++.+..+.|++.|++||+|+.+.++.|+.+ ||+||+|.+.+.|.+|++.-+ -.|+ |++..+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piId----GR~aNc 85 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIID----GRKANC 85 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Cccc----cccccc
Confidence 3468999999999999999999999999999999998876 599999999999999998543 3445 555555
Q ss_pred ecCC
Q 024269 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 86 nlA~ 89 (247)
T KOG0149|consen 86 NLAS 89 (247)
T ss_pred chhh
Confidence 5554
No 116
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.96 E-value=8.3e-09 Score=89.76 Aligned_cols=81 Identities=23% Similarity=0.376 Sum_probs=73.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC------CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEE
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (270)
+..+++|||+||++.++++.|...|..||+|..++|+.. ...+.++||-|-+-.||++|++.|+|..+.+..++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 357899999999999999999999999999999999653 35578999999999999999999999999999999
Q ss_pred EEecCCC
Q 024269 77 VELAHGG 83 (270)
Q Consensus 77 v~~~~~~ 83 (270)
+.|++..
T Consensus 251 ~gWgk~V 257 (877)
T KOG0151|consen 251 LGWGKAV 257 (877)
T ss_pred ecccccc
Confidence 9999644
No 117
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=1.1e-09 Score=82.15 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=72.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
...+|||++|...+++.-|...|-.||.|..+.++.+... ||+||+|+..++|..|+..|++.++. |+.|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~----GrtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF----GRTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc----ceeEEE
Confidence 4579999999999999999999999999999999876443 69999999999999999999999999 999999
Q ss_pred ecCCCCC
Q 024269 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+...+
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 9997544
No 118
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.93 E-value=7.9e-11 Score=104.06 Aligned_cols=132 Identities=25% Similarity=0.290 Sum_probs=110.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE---ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
...++||.||++.+.+.+|...|..+|.+..+.+ +..+..+|+|||+|.+++++.+|+.... ..+.|+
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~gK-------- 736 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFGK-------- 736 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhhh--------
Confidence 4568899999999999999999999987777666 3357889999999999999999999444 444441
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 161 (270)
..++|.|+|...|.++++.++..+|.+....++....
T Consensus 737 -------------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~ 773 (881)
T KOG0128|consen 737 -------------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA 773 (881)
T ss_pred -------------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhhc
Confidence 2578999999999999999999999998877665544
Q ss_pred ---CcEEEEEecChhhHHHHHHHhCCcccc
Q 024269 162 ---GTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 ---~g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
.|.++|.|.+..+|..++..+....+.
T Consensus 774 gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 774 GKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred cccccceeccCCCcchhhhhcccchhhhhh
Confidence 379999999999999999888777776
No 119
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.92 E-value=1.2e-08 Score=68.30 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=64.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcc--CceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccC----CeEEEE
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRV 77 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~--G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 77 (270)
+||+|+|||...|.++|.+++... |...-+.+.. +.-+.|||||.|.++++|....+.++|..|. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 799999999999999999999853 5555566644 3567899999999999999999999999985 577888
Q ss_pred EecCCC
Q 024269 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.+|.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 887643
No 120
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.91 E-value=3.8e-09 Score=89.66 Aligned_cols=81 Identities=25% Similarity=0.363 Sum_probs=75.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
..+||+|+|+.+++++|.++|+..|.|..++++.|..+ ||+|++|.+.++|..|++.|+|.++. |+.|+|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~----gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN----GRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC----CceEEeec
Confidence 78999999999999999999999999999999998776 59999999999999999999999999 99999999
Q ss_pred CCCCCCCCC
Q 024269 201 YDRSPSRSR 209 (270)
Q Consensus 201 ~~~~~~r~r 209 (270)
+.....+.+
T Consensus 95 ~~~~~~~~~ 103 (435)
T KOG0108|consen 95 ASNRKNAER 103 (435)
T ss_pred ccccchhHH
Confidence 986665444
No 121
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.91 E-value=1.4e-10 Score=94.76 Aligned_cols=140 Identities=24% Similarity=0.386 Sum_probs=114.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcc--CceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCC-CccCCeEEEEEecCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~--G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~~~~~ 83 (270)
..+||+||.+.++..+|..+|... |--..+.++ .|||||.+.+...|.+|++.++| ..+.|+++.|++.-+.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~k-----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLVK-----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceeee-----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 368999999999999999999854 222333333 68999999999999999999999 6678999999887654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEe-CCCC
Q 024269 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR-DSEG 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~-~~~~ 162 (270)
.. ....+.|.|+|+...++.|..+...||.+..|.... +..+
T Consensus 77 kq-------------------------------------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et 119 (584)
T KOG2193|consen 77 KQ-------------------------------------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET 119 (584)
T ss_pred HH-------------------------------------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH
Confidence 21 124578999999999999999999999999887533 3333
Q ss_pred cEEEEEecChhhHHHHHHHhCCcccc
Q 024269 163 TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 163 g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
...-|+|...+.+..|+.++++..+.
T Consensus 120 avvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 120 AVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 46677899999999999999999886
No 122
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.89 E-value=4.2e-09 Score=85.63 Aligned_cols=83 Identities=24% Similarity=0.493 Sum_probs=73.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
+..|||++||.++++++|++.|.+||.|..+.++.| ..+++|+||+|.++++++.++. +.-+.|.|+.+.|..|.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 569999999999999999999999999999888664 5789999999999999999998 888999999999999998
Q ss_pred CCCCCCC
Q 024269 83 GSGRGPS 89 (270)
Q Consensus 83 ~~~~~~~ 89 (270)
.......
T Consensus 176 k~~~~~~ 182 (311)
T KOG4205|consen 176 KEVMQST 182 (311)
T ss_pred hhhcccc
Confidence 7554433
No 123
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.86 E-value=1.5e-08 Score=82.71 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=69.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|.++|..||.+..+.+..+... |+|||+|.+.++|..|+..+++..+. ++.|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~----~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE----GRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC----CceeEee
Confidence 589999999999999999999999999999998887532 69999999999999999999999999 9999999
Q ss_pred cCC
Q 024269 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 864
No 124
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.85 E-value=2.6e-08 Score=63.40 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=49.0
Q ss_pred ceEEEcCCCCCCCHHH----HHHHHhccC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 7 RTIYVGNLPSDIREYE----VEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~----l~~~F~~~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
..|+|.|||.+..... |++|+..|| .|..| . .+.|+|.|.+++.|.+|.+.|+|-.+.|.+|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-----~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-----GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-----CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999999987766 566777776 66666 2 4689999999999999999999999999999999985
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 44
No 125
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.78 E-value=1.7e-08 Score=81.75 Aligned_cols=173 Identities=21% Similarity=0.251 Sum_probs=128.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEe---cCCCCCceEEEEEccHHHHHHHHHhcCC-CccCCeEEEEEec
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~~ 80 (270)
..+++|++++..++.+.++..++..+|.+....+. ....++++++|.|...+.+..|+. +.+ ..+.+..+...+.
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 36789999999999999999999999987776662 245779999999999999999999 555 4556666655554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
............+ ..........+|.+++..++.++|...|..+|.|..+.+....
T Consensus 166 ~~~~~~~~n~~~~------------------------~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~ 221 (285)
T KOG4210|consen 166 TRRGLRPKNKLSR------------------------LSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE 221 (285)
T ss_pred ccccccccchhcc------------------------cccCccccceeecccccccchHHHhhhccCcCcceeeccCCCC
Confidence 4332111000000 1111222344499999999999999999999999999998887
Q ss_pred CC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCCCC
Q 024269 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSR 207 (270)
Q Consensus 161 ~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~~r 207 (270)
.. ++++|.|.....+..++.. ....+. +..+.+.+....+..
T Consensus 222 ~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~ 267 (285)
T KOG4210|consen 222 ESGDSKGFAYVDFSAGNSKKLALND-QTRSIG----GRPLRLEEDEPRPKS 267 (285)
T ss_pred CccchhhhhhhhhhhchhHHHHhhc-ccCccc----CcccccccCCCCccc
Confidence 76 4899999999999999987 777777 777777777655443
No 126
>smart00361 RRM_1 RNA recognition motif.
Probab=98.77 E-value=4.1e-08 Score=62.55 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=47.0
Q ss_pred HHHHHHHHH----HhCCceEEE-EEeCC------CCcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 138 WQDLKDHMR----KAGDVCFAE-VSRDS------EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 138 ~~~l~~~f~----~~g~i~~~~-~~~~~------~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
+++|.++|. +||.|..+. +..++ ..|++||+|.+.++|..|+..|||..+. |+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~----gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD----GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEe
Confidence 467788887 999999985 44332 2369999999999999999999999998 887764
No 127
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.77 E-value=1.2e-08 Score=80.03 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
-+...+||+|+.+.+|.+++...|+.||.|..+.|.. .++++|||||+|.+.+.+..|+. |||..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4678999999999999999999999999998777744 35789999999999999999999 9999999999999987
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 644
No 128
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.74 E-value=8.7e-08 Score=83.44 Aligned_cols=190 Identities=11% Similarity=-0.046 Sum_probs=122.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE--ecCCCC-CceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRP-PCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~--~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+.+.+-+.+.++++...|++++|... .|....| ..-+.+ .|.++|+|..+.+++.|++ -|...+-.+.+.|..+-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 45667778999999999999999742 2344444 333333 7899999999999999998 67777788888887654
Q ss_pred CCCCCCCCCCC-CCC--CCCCCCCCC-CCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceE-EEE
Q 024269 82 GGSGRGPSSSD-RRG--GYGGGGAGG-AGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEV 156 (270)
Q Consensus 82 ~~~~~~~~~~~-~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~ 156 (270)
...-....... ... ......+.. .+..+.-........+...+.+|||..||..++..++..+|...-.|++ |.+
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 43211111100 000 000000000 0000011111223456677889999999999999999999998777766 665
Q ss_pred EeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 157 SRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 157 ~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
...+.. +.|||.|..++++..|..--+...+. -+.|+|+.
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G----~r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG----HRIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccC----ceEEEeec
Confidence 544433 59999999999888888755555554 56666654
No 129
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.67 E-value=1.3e-07 Score=71.81 Aligned_cols=75 Identities=13% Similarity=0.160 Sum_probs=67.5
Q ss_pred ceEEecCCCCCCCHHHHHH----HHHHhCCceEEEEEeCCC-CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 125 YRVIVRGLPSSASWQDLKD----HMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~----~f~~~g~i~~~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
.+|||.||+..+..++|+. +|++||.|..|....... .|-|||.|.+.+.|-.|+.+|+|..+- |..+++.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy----gK~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY----GKPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc----Cchhhee
Confidence 3999999999999999887 999999999988875543 479999999999999999999999999 8999999
Q ss_pred cCCC
Q 024269 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+++.
T Consensus 86 yA~s 89 (221)
T KOG4206|consen 86 YAKS 89 (221)
T ss_pred cccC
Confidence 8874
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.66 E-value=2.6e-07 Score=78.90 Aligned_cols=79 Identities=27% Similarity=0.358 Sum_probs=71.4
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-c---EEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-T---YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-g---~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
...+..|+|.+|...+..-+|+.+|++||+|+-++++.+... | |+||++.+.++|.+||..||..+++ |+-|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH----GrmI 477 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH----GRMI 477 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc----ceee
Confidence 345679999999999999999999999999999999887544 3 9999999999999999999999999 9999
Q ss_pred eeecCCC
Q 024269 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|+.++.
T Consensus 478 SVEkaKN 484 (940)
T KOG4661|consen 478 SVEKAKN 484 (940)
T ss_pred eeeeccc
Confidence 9998874
No 131
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=9.5e-08 Score=73.16 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=62.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
..+||++||+.+.+.+|+.+|..||.+..+.+.. ||+||+|++..+|..|+..+++..+. +-.+.++++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~----~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELC----GERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceec----ceeeeeeccc
Confidence 3689999999999999999999999999998877 58999999999999999999999998 5446666665
No 132
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=7.4e-07 Score=72.61 Aligned_cols=158 Identities=19% Similarity=0.222 Sum_probs=107.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCce---EEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI---LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i---~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
..+..|-.++||...++.+|-.+|.-.-.. .-+-+...+.-.|.|.|.|.++|.-+.|++ -+.+.+.++.|.|.-+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 456777889999999999999999854211 112223335557899999999999999999 6777888899988655
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHh----CC---ceE
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA----GD---VCF 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~----g~---i~~ 153 (270)
....-.. +. +++........+......|...+||++.++.++.++|..- |. |..
T Consensus 137 ~ge~f~~---------ia----------gg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF 197 (508)
T KOG1365|consen 137 TGEEFLK---------IA----------GGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF 197 (508)
T ss_pred CchhheE---------ec----------CCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE
Confidence 4331000 00 0001111112222334577788999999999999999632 22 333
Q ss_pred EEEEeCCCCcEEEEEecChhhHHHHHHH
Q 024269 154 AEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 154 ~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 181 (270)
+....++.+|-|||.|..+++|+.|+.+
T Consensus 198 V~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 198 VTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EECCCCCcccceEEEecCHHHHHHHHHH
Confidence 4444455668999999999999999985
No 133
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.50 E-value=5.7e-08 Score=75.01 Aligned_cols=63 Identities=22% Similarity=0.344 Sum_probs=53.9
Q ss_pred HHHHHHHh-ccCceEEEEE--ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 21 YEVEDLFY-KYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~l~~~F~-~~G~i~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
+||...|+ +||+|..++| ....+..|.+||.|..+++|++|++.||+..|.|++|.++++..+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 55666666 8999999987 333466899999999999999999999999999999999987644
No 134
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.50 E-value=4e-07 Score=80.39 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=68.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
.+||+|++|+..+++.+|..+|+.||.|..|.++... ++|||.+....+|.+|+.+|++..+. ...|++.++.+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~----~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVA----DKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhccccc----ceeeEEeeecc
Confidence 4699999999999999999999999999999887765 69999999999999999999998888 88888888765
Q ss_pred CC
Q 024269 204 SP 205 (270)
Q Consensus 204 ~~ 205 (270)
..
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 43
No 135
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.49 E-value=1e-06 Score=66.64 Aligned_cols=83 Identities=14% Similarity=0.205 Sum_probs=67.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-----cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
....+|||.+||.++...+|..+|..|...+.+.+.....+ -++|+.|.+...|+.|++.|||..++ +..+..+
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD-pE~~stL 110 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD-PETGSTL 110 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec-cccCcee
Confidence 44679999999999999999999999876666655443322 39999999999999999999999997 3447888
Q ss_pred eeecCCCCC
Q 024269 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
+++.++...
T Consensus 111 hiElAKSNt 119 (284)
T KOG1457|consen 111 HIELAKSNT 119 (284)
T ss_pred EeeehhcCc
Confidence 888887444
No 136
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.49 E-value=1.7e-07 Score=72.14 Aligned_cols=75 Identities=19% Similarity=0.326 Sum_probs=66.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE---ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
..-.||.+.|-.+++++.|-..|.+|-.....++ ..+++++||+||.|.++.++..|+..|||..++.++|.+.-
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 4567999999999999999999999987766666 45789999999999999999999999999999999988743
No 137
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.44 E-value=2.3e-07 Score=75.12 Aligned_cols=81 Identities=28% Similarity=0.385 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEE--------EEE---ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~--------~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
...-+|||.+||..+++++|.++|.+||.|.. |+| +.|+.+++-|.|.|++...|+.|+.-+++..|.|
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 45679999999999999999999999997743 334 4578899999999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 024269 73 CRLRVELAHGGS 84 (270)
Q Consensus 73 ~~l~v~~~~~~~ 84 (270)
.+|+|.++....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999998887554
No 138
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.40 E-value=1.5e-06 Score=70.06 Aligned_cols=80 Identities=19% Similarity=0.171 Sum_probs=66.7
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCC-ccccCccCCcee
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD-TEFRNPWARGRI 196 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~-~~~~~~~~~~~i 196 (270)
++....-.+|||++|...+++.+|.++|.+||+|..+.+.... ++|||+|.+.+.|+.|.++.-+ ..|. |.+|
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI~----G~Rl 295 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVIN----GFRL 295 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeeec----ceEE
Confidence 3444556799999999999999999999999999999988765 5999999999999988887644 4445 8888
Q ss_pred eeecCCC
Q 024269 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.+.....
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 8886654
No 139
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.40 E-value=8.5e-07 Score=60.91 Aligned_cols=71 Identities=13% Similarity=0.285 Sum_probs=44.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC-----CCccCCeEEEEEec
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD-----GYNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~-----g~~~~g~~l~v~~~ 80 (270)
+.|+|.+++..++.++|+++|+.||.|..|.+... -..|||.|.++++|+.|++.+. +..|.+..+.+..-
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 57899999999999999999999999999988642 3479999999999999988663 34667777766654
No 140
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.39 E-value=7.9e-07 Score=72.61 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=49.2
Q ss_pred eEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-------cEEEEEecChhhHHHHHHHhC
Q 024269 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-------g~~~v~f~~~~~a~~a~~~l~ 183 (270)
.|.|.||.+.++.++++.+|...|+|..+.++.+... ..|||.|.+...+..|...-|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhLtn 73 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHLTN 73 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhhcc
Confidence 7999999999999999999999999999988775433 389999999888777766433
No 141
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.38 E-value=1.6e-06 Score=67.99 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=66.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
...|+|.|||..++.++|+++|..||.+..+-+..++.+ |.|-|.|...++|..|++++++..++ |..+.+..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld----G~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD----GRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC----CceeeeEE
Confidence 378999999999999999999999999888888888776 79999999999999999999998888 77776655
Q ss_pred CC
Q 024269 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 44
No 142
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.34 E-value=8.9e-07 Score=68.31 Aligned_cols=143 Identities=17% Similarity=0.259 Sum_probs=104.1
Q ss_pred HHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCC
Q 024269 24 EDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGG 101 (270)
Q Consensus 24 ~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 101 (270)
...|+.+-......+.. .+.-.+++|+.|.....-..+...-++..++-.+|++.-.... ..+
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw--edP------------- 181 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW--EDP------------- 181 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc--CCc-------------
Confidence 55566655554444433 2456789999999888888888777777777666544322211 000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHH
Q 024269 102 AGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKY 177 (270)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~ 177 (270)
..........+||-+.|.+.++.+.|-..|.+|-.....+++++..+ ||+||.|.++.++..
T Consensus 182 --------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~r 247 (290)
T KOG0226|consen 182 --------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVR 247 (290)
T ss_pred --------------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHH
Confidence 00112234578999999999999999999999998888888887655 599999999999999
Q ss_pred HHHHhCCccccCccCCceeeee
Q 024269 178 AIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 178 a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
|+.+|+|..++ .+.|.++
T Consensus 248 Amrem~gkyVg----srpiklR 265 (290)
T KOG0226|consen 248 AMREMNGKYVG----SRPIKLR 265 (290)
T ss_pred HHHhhcccccc----cchhHhh
Confidence 99999999998 6666544
No 143
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.31 E-value=3.6e-06 Score=67.84 Aligned_cols=77 Identities=27% Similarity=0.447 Sum_probs=67.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceE--------EEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCc
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 190 (270)
.....|||.|||..+|.+++.++|++||.|.. |++..+..+ |-|++.|-..+...-|++.|++..+.
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r-- 209 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR-- 209 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc--
Confidence 34457999999999999999999999997643 677777665 68999999999999999999999999
Q ss_pred cCCceeeeecCC
Q 024269 191 WARGRITVKRYD 202 (270)
Q Consensus 191 ~~~~~i~v~~~~ 202 (270)
|..|+|+.++
T Consensus 210 --g~~~rVerAk 219 (382)
T KOG1548|consen 210 --GKKLRVERAK 219 (382)
T ss_pred --CcEEEEehhh
Confidence 9999999887
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.30 E-value=9e-06 Score=54.55 Aligned_cols=77 Identities=16% Similarity=0.256 Sum_probs=60.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHh--CCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
++|.|.|+|...+.++|.+++... |....+.++.|-.+ |||||.|.+++.|..-.+.++|.....-.......+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 589999999999999999998774 56666777766443 799999999999999999999998763333333344
Q ss_pred ecC
Q 024269 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
..|
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 443
No 145
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.28 E-value=1.5e-05 Score=67.62 Aligned_cols=75 Identities=19% Similarity=0.340 Sum_probs=61.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC----CCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~----~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
..+|||.|||.+++.++|+++|..||.|....|.... ...|+||+|.+.+.++.|+.+- -..++ ++++.|+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig----~~kl~Ve 362 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG----GRKLNVE 362 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC----CeeEEEE
Confidence 3469999999999999999999999999887665532 2259999999999999999966 55555 8888888
Q ss_pred cCCC
Q 024269 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.-..
T Consensus 363 ek~~ 366 (419)
T KOG0116|consen 363 EKRP 366 (419)
T ss_pred eccc
Confidence 7653
No 146
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.23 E-value=5.7e-06 Score=62.09 Aligned_cols=79 Identities=18% Similarity=0.203 Sum_probs=63.7
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHh-CCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccC
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~-g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~ 192 (270)
.+.......++|..+|..+.+.++...|.++ |.+....+.++..+ |||||+|++.+.|.-|.+.||+..+.
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~---- 118 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM---- 118 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh----
Confidence 3444555688999999999999999999998 66676777666655 49999999999999999999999987
Q ss_pred Cceeeeec
Q 024269 193 RGRITVKR 200 (270)
Q Consensus 193 ~~~i~v~~ 200 (270)
+.-+.+..
T Consensus 119 e~lL~c~v 126 (214)
T KOG4208|consen 119 EHLLECHV 126 (214)
T ss_pred hheeeeEE
Confidence 55554443
No 147
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.23 E-value=2.3e-06 Score=73.14 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=59.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCcccc
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
.....+|+|.|||..++.++|..+|+.||+|..+....... +.+||+|-+..+|+.|+++|++.++.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-~~~~v~FyDvR~A~~Alk~l~~~~~~ 138 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-GIVFVEFYDVRDAERALKALNRREIA 138 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-ceEEEEEeehHhHHHHHHHHHHHHhh
Confidence 34557999999999999999999999999999865544433 59999999999999999999999998
No 148
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.22 E-value=1e-06 Score=66.45 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=61.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC--cEEEEEecChhhHHHHHHHhCCcccc
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
.+...+|+|.|+...++++-|.++|-+.|+|..+.|..+.+. .||||.|++.....-|++.+||..+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc
Confidence 345679999999999999999999999999999999887665 49999999999999999999998876
No 149
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=98.21 E-value=1.6e-06 Score=74.43 Aligned_cols=77 Identities=12% Similarity=0.233 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh-ccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCcc---CCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~v~~ 79 (270)
+.++.|+|.||-.-+|.-+|+.|+. .+|.|.+++|- +-+..|||.|.+.++|......|||..| +++.|.|.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmD---kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMD---KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHHHHH---HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 67888888662 2266899999999999999999999998 678999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8644
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.17 E-value=6.3e-06 Score=48.99 Aligned_cols=53 Identities=30% Similarity=0.567 Sum_probs=43.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHH
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
++.|-|.|.++...+. +...|..||+|.++.+. .....+||+|.+..+|+.||
T Consensus 1 ~~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 4688999999887755 45588899999998885 23568999999999999985
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.16 E-value=1.8e-05 Score=50.61 Aligned_cols=69 Identities=17% Similarity=0.275 Sum_probs=47.6
Q ss_pred ceEEecCCCCCCCHHH----HHHHHHHhC-CceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 125 YRVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~----l~~~f~~~g-~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
..|+|.|||...+... |++++..+| .|..+. ++.|.|.|.+.+.|..|.+.|+|..+- |..|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~------~~tAilrF~~~~~A~RA~KRmegEdVf----G~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS------GGTAILRFPNQEFAERAQKRMEGEDVF----GNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS----SS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe------CCEEEEEeCCHHHHHHHHHhhcccccc----cceEEEE
Confidence 4699999999988765 567777886 554442 258999999999999999999999999 9999999
Q ss_pred cCCC
Q 024269 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8753
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.13 E-value=3.6e-06 Score=68.43 Aligned_cols=80 Identities=21% Similarity=0.344 Sum_probs=71.0
Q ss_pred CCCCceEE-EcCCCCCCCHHHHHHHHhccCceEEEEEe---cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 3 GRFSRTIY-VGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~~~~l~-v~nL~~~~t~~~l~~~F~~~G~i~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
..++.++| |++|+.++++++|...|..+|.|..+.+. .++..+|+|||+|....++..|+.. +...+.+.++.+.
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 259 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLE 259 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccc
Confidence 34566777 99999999999999999999999999984 3578899999999999999999996 8899999999999
Q ss_pred ecCCC
Q 024269 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
...+.
T Consensus 260 ~~~~~ 264 (285)
T KOG4210|consen 260 EDEPR 264 (285)
T ss_pred cCCCC
Confidence 88766
No 153
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.11 E-value=1.3e-05 Score=70.36 Aligned_cols=76 Identities=20% Similarity=0.316 Sum_probs=64.8
Q ss_pred CCCc-eEEEcCCCCCCCHHHHHHHHhccCceE-EEEE--ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSR-TIYVGNLPSDIREYEVEDLFYKYGRIL-DIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~-~l~v~nL~~~~t~~~l~~~F~~~G~i~-~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
.+.+ .|-+.|+|++++-+||.+||..|-.+. +|.+ ..+|.+.|.|.|.|++.++|.+|...|++..|..++|++.+
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 3444 888999999999999999999996443 3444 44688999999999999999999999999999999998864
No 154
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.08 E-value=1.3e-05 Score=64.55 Aligned_cols=76 Identities=24% Similarity=0.443 Sum_probs=62.0
Q ss_pred CceEEEcCCCCCCCHHHH------HHHHhccCceEEEEEec-CC---CCCc--eEEEEEccHHHHHHHHHhcCCCccCCe
Q 024269 6 SRTIYVGNLPSDIREYEV------EDLFYKYGRILDIELKI-PP---RPPC--YCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l------~~~F~~~G~i~~~~~~~-~~---~~~g--~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
..-+||-+||+.+..+++ .++|.+||+|..|.+.. +. ...+ -.||+|.+.|||..++...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 356899999999887773 57999999999998843 21 1112 249999999999999999999999999
Q ss_pred EEEEEecC
Q 024269 74 RLRVELAH 81 (270)
Q Consensus 74 ~l~v~~~~ 81 (270)
.|++.|..
T Consensus 194 ~lkatYGT 201 (480)
T COG5175 194 VLKATYGT 201 (480)
T ss_pred eEeeecCc
Confidence 99998874
No 155
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=98.07 E-value=3e-05 Score=52.41 Aligned_cols=76 Identities=20% Similarity=0.291 Sum_probs=54.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE-e---------cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL-K---------IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~-~---------~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
...+.|.|-+.|+. ....|.+.|++||.|.+..- . ..........|+|.++.+|.+||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 34678999999988 55678899999999988751 0 011335789999999999999999 999999886
Q ss_pred EE-EEEecC
Q 024269 74 RL-RVELAH 81 (270)
Q Consensus 74 ~l-~v~~~~ 81 (270)
.| -|.+++
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 54 466653
No 156
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.04 E-value=2.7e-06 Score=65.77 Aligned_cols=70 Identities=17% Similarity=0.279 Sum_probs=59.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCC-----------CCC----ceEEEEEccHHHHHHHHHhcCCCc
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP-----------RPP----CYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~-----------~~~----g~afV~f~~~~~a~~A~~~l~g~~ 69 (270)
.+-.|||++||+.+...-|+++|++||.|-.|+|.... ... .-|+|+|.+...|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 45689999999999999999999999999999994321 111 237899999999999999999999
Q ss_pred cCCeE
Q 024269 70 FDGCR 74 (270)
Q Consensus 70 ~~g~~ 74 (270)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 157
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.98 E-value=4.1e-05 Score=60.27 Aligned_cols=77 Identities=18% Similarity=0.214 Sum_probs=67.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
......++|+|+...++.++++..|+.||.+..+.+..+... +|+||+|.+.+.++.|+. |++..+. +..|
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~----~~~i 172 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP----GPAI 172 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc----cccc
Confidence 345578999999999999999999999999998888877655 499999999999999999 9999999 7777
Q ss_pred eeecCC
Q 024269 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.+....
T Consensus 173 ~vt~~r 178 (231)
T KOG4209|consen 173 EVTLKR 178 (231)
T ss_pred eeeeee
Confidence 766554
No 158
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.95 E-value=1.7e-05 Score=54.51 Aligned_cols=59 Identities=29% Similarity=0.517 Sum_probs=40.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCc
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 185 (270)
..|+|.+++..++.++|++.|+.||.|.+|.+.... ..|+|.|.+++.|+.|++++...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~--~~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD--TEGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT---SEEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC--CEEEEEECCcchHHHHHHHHHhc
Confidence 578899999999999999999999999999887754 38999999999999999987665
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.92 E-value=3.9e-05 Score=65.85 Aligned_cols=77 Identities=26% Similarity=0.409 Sum_probs=61.3
Q ss_pred CCceEEEcCCCCCCCH------HHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccC-CeEE
Q 024269 5 FSRTIYVGNLPSDIRE------YEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRL 75 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~------~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l 75 (270)
....|+|.|+|.--.. .-|.++|+++|+|..+.+.. .++.+||.|++|.+..+|+.|++.|||..|+ .+.+
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 3468899999875222 23667899999999998854 4678999999999999999999999998885 5677
Q ss_pred EEEecC
Q 024269 76 RVELAH 81 (270)
Q Consensus 76 ~v~~~~ 81 (270)
.|..-+
T Consensus 137 ~v~~f~ 142 (698)
T KOG2314|consen 137 FVRLFK 142 (698)
T ss_pred Eeehhh
Confidence 765543
No 160
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=97.90 E-value=3.9e-05 Score=67.57 Aligned_cols=77 Identities=14% Similarity=0.135 Sum_probs=64.5
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC-------CcEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-------~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
.+..+.|||+||++.++++.|...|..||+|..++++.... ..++||.|.+..+|+.|++.|+|..+. +
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~----~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM----E 246 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee----e
Confidence 44567999999999999999999999999999988876532 249999999999999999999998886 4
Q ss_pred ceeeeecC
Q 024269 194 GRITVKRY 201 (270)
Q Consensus 194 ~~i~v~~~ 201 (270)
..+.+-+.
T Consensus 247 ~e~K~gWg 254 (877)
T KOG0151|consen 247 YEMKLGWG 254 (877)
T ss_pred eeeeeccc
Confidence 44444443
No 161
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.89 E-value=9.4e-05 Score=53.05 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=53.6
Q ss_pred CCCceEEEcCCC-----CCCCH----HHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeE
Q 024269 4 RFSRTIYVGNLP-----SDIRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~~~~l~v~nL~-----~~~t~----~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
.+.-||.|.=+. ...-+ .+|.+.|..||+|.-+++. .+.-+|+|.+.++|.+|+. ++|..+.|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 566777776554 12223 3677888999999888887 3468999999999999999 9999999999
Q ss_pred EEEEecCCC
Q 024269 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|+|....+.
T Consensus 99 l~i~LKtpd 107 (146)
T PF08952_consen 99 LKIRLKTPD 107 (146)
T ss_dssp EEEEE----
T ss_pred EEEEeCCcc
Confidence 999886644
No 162
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.88 E-value=1.1e-05 Score=66.94 Aligned_cols=63 Identities=29% Similarity=0.282 Sum_probs=55.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCC--------C--------CCceEEEEEccHHHHHHHHHhcCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--------R--------PPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~--------~--------~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
++++|.+.|||.+-.-+.|.+||+.||.|..|.|...+ . .+-+|+|+|++.+.|.+|.++|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 78999999999999999999999999999999995431 1 145799999999999999997755
No 163
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.87 E-value=2.2e-05 Score=60.98 Aligned_cols=60 Identities=17% Similarity=0.218 Sum_probs=47.8
Q ss_pred HHHHHHHH-HhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 139 QDLKDHMR-KAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 139 ~~l~~~f~-~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
+++...|. +||.|+.+.+-.+... |-+||.|...++|+.|++.||+..+. |++|..+...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc----CCcceeeecC
Confidence 34444455 8999998877665433 68999999999999999999999999 8888777654
No 164
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.75 E-value=6.4e-05 Score=67.63 Aligned_cols=78 Identities=15% Similarity=0.170 Sum_probs=70.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEE--ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
...|+|.|+|+..|.++|+.++..+|.+..+.+ .+.|+++|.|||.|.++.+|..++...+.+.+.-+.+.|..+.+.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp~ 815 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNPE 815 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCCc
Confidence 457899999999999999999999999999877 456899999999999999999999989999998888888887764
No 165
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=0.00015 Score=61.92 Aligned_cols=60 Identities=25% Similarity=0.366 Sum_probs=54.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh-ccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHH
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~-~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~ 63 (270)
++.+|||||+||--++.++|..+|. .||.|..+-|-.| +.++|-|-|+|.+..+-.+||.
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIs 431 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAIS 431 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHh
Confidence 7899999999999999999999999 7999999988544 4678999999999999999987
No 166
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.63 E-value=0.00025 Score=64.35 Aligned_cols=78 Identities=23% Similarity=0.332 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCC--eEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~~~ 81 (270)
-+++.++|++|.+.+....|...|..||.|..|.+-.. .-||||.|++...|+.|++.|-|..|+| +.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 47889999999999999999999999999999988533 6799999999999999999999999975 789999998
Q ss_pred CCC
Q 024269 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 530 ~~~ 532 (975)
T KOG0112|consen 530 PPG 532 (975)
T ss_pred CCC
Confidence 664
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.61 E-value=0.00029 Score=54.84 Aligned_cols=102 Identities=26% Similarity=0.274 Sum_probs=81.6
Q ss_pred HHHHHHHhcCCCccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCC
Q 024269 57 DAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA 136 (270)
Q Consensus 57 ~a~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~ 136 (270)
-|..|...|++....|+.|.|.|+-. ..|+|.||...+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~------------------------------------------a~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMH------------------------------------------AELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeecc------------------------------------------ceEEEEecchhh
Confidence 35566666889999999999999764 379999999999
Q ss_pred CHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 137 SWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 137 ~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
.-+.+.+.|..||+|....+..+... +-++|+|...-.|.+|+..+...-+.....++..-|..
T Consensus 44 sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP 110 (275)
T KOG0115|consen 44 SNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEP 110 (275)
T ss_pred hhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCCh
Confidence 99999999999999988666555433 58999999999999999988666665444555555544
No 168
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.59 E-value=0.00021 Score=56.58 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=50.6
Q ss_pred HHHHHHHHhccCceEEEEEecCC----CCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 20 EYEVEDLFYKYGRILDIELKIPP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 20 ~~~l~~~F~~~G~i~~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
++++.+...+||.|..|.|.... .-.--.||+|+..++|.+|+-.|||.+|+|+.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45677888999999999885431 223358999999999999999999999999999887754
No 169
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.58 E-value=7.7e-05 Score=60.40 Aligned_cols=76 Identities=13% Similarity=0.147 Sum_probs=63.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccC--ceEEEEEe---cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G--~i~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.-++||+||-..+|++||.+.+...| .+.++++. ..|.++|||+|..-+..++++.|+.|....|+|+.-.|...
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 34789999999999999999998776 55555552 24789999999999999999999999999999987777655
Q ss_pred C
Q 024269 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 160 N 160 (498)
T KOG4849|consen 160 N 160 (498)
T ss_pred c
Confidence 3
No 170
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.47 E-value=0.00046 Score=56.40 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=63.8
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceE--------EEEEeCCCC----cEEEEEecChhhHHHHHHHhCCcccc
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
.....+|||.+||..+++++|.++|.++|.|.. |++.+++.+ +-|.|.|+++..|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445679999999999999999999999987643 444444433 59999999999999999999999998
Q ss_pred CccCCceeeeecCC
Q 024269 189 NPWARGRITVKRYD 202 (270)
Q Consensus 189 ~~~~~~~i~v~~~~ 202 (270)
+..|.|-.+.
T Consensus 143 ----gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 ----GNTIKVSLAE 152 (351)
T ss_pred ----CCCchhhhhh
Confidence 6777766655
No 171
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.38 E-value=0.00049 Score=40.82 Aligned_cols=52 Identities=17% Similarity=0.369 Sum_probs=40.9
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHH
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAI 179 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~ 179 (270)
..|-|.+.+.... +.+...|..||+|..+.+... ....+|.|.+..+|+.|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 3577888886665 445568889999999888732 248999999999999985
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.37 E-value=0.0011 Score=42.57 Aligned_cols=55 Identities=16% Similarity=0.292 Sum_probs=42.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+..+|+ +|......||.++|+.||.|.--.|.. .-|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi~d-----TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWIND-----TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEECT-----TEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEEcC-----CcEEEEeecHHHHHHHHHHhc
Confidence 3566675 999999999999999999986666653 379999999999999998775
No 173
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.14 E-value=0.0015 Score=52.91 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=62.0
Q ss_pred CCcceEEecCCCCCCCHHHH------HHHHHHhCCceEEEEEeCCCC-----c--EEEEEecChhhHHHHHHHhCCcccc
Q 024269 122 HSEYRVIVRGLPSSASWQDL------KDHMRKAGDVCFAEVSRDSEG-----T--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l------~~~f~~~g~i~~~~~~~~~~~-----g--~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
....-+||-+||+.+..+++ .++|.+||.|..|.+.+.... + -+||.|...++|..|+.+.+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 44568899999998877762 588999999999887664321 2 4599999999999999999999998
Q ss_pred CccCCceeeeecCC
Q 024269 189 NPWARGRITVKRYD 202 (270)
Q Consensus 189 ~~~~~~~i~v~~~~ 202 (270)
|+.|+..+..
T Consensus 192 ----Gr~lkatYGT 201 (480)
T COG5175 192 ----GRVLKATYGT 201 (480)
T ss_pred ----CceEeeecCc
Confidence 8888766644
No 174
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.001 Score=57.55 Aligned_cols=67 Identities=27% Similarity=0.381 Sum_probs=55.5
Q ss_pred CcceEEecCCCCCCC------HHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccC
Q 024269 123 SEYRVIVRGLPSSAS------WQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~------~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~ 189 (270)
-...|.|.|+|---. ...|..+|+++|++..+.++.+..+ |+.|++|++..+|+.|++.|||..++.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 346888999884332 2346788999999999999877666 599999999999999999999999983
No 175
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=97.07 E-value=2.5e-05 Score=68.29 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=64.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.+.-+|||+||...+..+-+..+...||-|..+.... |||++|..+.-+..|+..|+-..++|..+.+..-.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~ 109 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDE 109 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchh
Confidence 4678999999999999999999999999998887652 99999999999999999999999999998887643
No 176
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=97.07 E-value=0.0065 Score=41.94 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=48.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcc-CceEEEEEecCCCC-CceEEEEEccHHHHHHHHHhcCCCccCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIELKIPPRP-PCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~-G~i~~~~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
.+..+.+...|..++.++|..+.+.+ ..|..++|..++.+ +-.+.++|.++++|+.....+||..|.-
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33444444444456666676666654 46778888888754 4457889999999999999999998853
No 177
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.03 E-value=0.00047 Score=53.69 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=58.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---------c-------EEEEEecChhhHHHHHHHhCCccc
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---------T-------YGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---------g-------~~~v~f~~~~~a~~a~~~l~~~~~ 187 (270)
.-.||++++|+.+....|+++|..||.|-.+.+...... + -++|+|.+...|......||+..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999998765432 1 589999999999999999999999
Q ss_pred c
Q 024269 188 R 188 (270)
Q Consensus 188 ~ 188 (270)
+
T Consensus 154 g 154 (278)
T KOG3152|consen 154 G 154 (278)
T ss_pred C
Confidence 8
No 178
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.00 E-value=0.0072 Score=43.00 Aligned_cols=74 Identities=16% Similarity=0.146 Sum_probs=57.8
Q ss_pred CCCceEEEcCCCCCCCH-HHH---HHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIRE-YEV---EDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~-~~l---~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
.+-.||.|.-|..++.. +|| ...++.||+|..|.+.- +.-|.|.|.+..+|-.|+..++. ...|.-+.+.|
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsW 158 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSW 158 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeec
Confidence 45578999888888543 444 45567899999998742 56799999999999999998876 66788888887
Q ss_pred cCC
Q 024269 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
-+.
T Consensus 159 qqr 161 (166)
T PF15023_consen 159 QQR 161 (166)
T ss_pred ccc
Confidence 653
No 179
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.97 E-value=0.00093 Score=55.83 Aligned_cols=68 Identities=16% Similarity=0.299 Sum_probs=57.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeC---CCC--------------cEEEEEecChhhHHHHHHHh
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEG--------------TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~--------------g~~~v~f~~~~~a~~a~~~l 182 (270)
+..+..+|.+.|||.+-.-+.|.++|..+|.|..|.|.+. +.. -+|+|+|+..+.|.+|.+.|
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3346789999999999999999999999999999999876 211 17999999999999999988
Q ss_pred CCccc
Q 024269 183 DDTEF 187 (270)
Q Consensus 183 ~~~~~ 187 (270)
+....
T Consensus 307 ~~e~~ 311 (484)
T KOG1855|consen 307 NPEQN 311 (484)
T ss_pred chhhh
Confidence 65443
No 180
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=96.89 E-value=0.01 Score=50.22 Aligned_cols=68 Identities=16% Similarity=0.289 Sum_probs=58.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhcc-CceEEEEEecCCCCCc-eEEEEEccHHHHHHHHHhcCCCccCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIELKIPPRPPC-YCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~-G~i~~~~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
+++.|+|-.+|..+|..||..|...+ -.|.+|.+..++.+.. .+.|.|.+.++|....+.+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 37899999999999999999998865 4788999988875544 47799999999999999999999864
No 181
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.89 E-value=0.0016 Score=52.68 Aligned_cols=17 Identities=18% Similarity=0.132 Sum_probs=8.5
Q ss_pred CceEEEEEccHHHHHHH
Q 024269 45 PCYCFVEFENARDAEDA 61 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A 61 (270)
+.-.||-|.-..-|.+.
T Consensus 173 RT~v~vry~pe~iACac 189 (367)
T KOG0835|consen 173 RTDVFVRYSPESIACAC 189 (367)
T ss_pred ccceeeecCHHHHHHHH
Confidence 44566666544444333
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.82 E-value=0.00081 Score=50.84 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=50.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhc-cCceE---EEEEecC-----CCCCceEEEEEccHHHHHHHHHhcCCCccCC--
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRIL---DIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDG-- 72 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~-~G~i~---~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-- 72 (270)
.....|.|++||+++|++++.+.+.. ++... .+.-... ...-.-|||.|.+.+++......++|..|.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 46679999999999999999997776 66552 2221111 1223569999999999999999999977732
Q ss_pred ---eEEEEEecCC
Q 024269 73 ---CRLRVELAHG 82 (270)
Q Consensus 73 ---~~l~v~~~~~ 82 (270)
.+..|++|-.
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 3566777664
No 183
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.78 E-value=0.012 Score=35.81 Aligned_cols=53 Identities=19% Similarity=0.357 Sum_probs=41.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcc----CceEEEEEecCCCCCceEEEEEccHHHHHHHHHhc
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKY----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~----G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..|+|.|+. +++.+||+.+|..| + ...|..+-+ .-|=|.|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~-~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEG-PFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCC-CceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 578999985 68999999999998 4 345555433 24889999999999999754
No 184
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.74 E-value=0.00092 Score=58.11 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=61.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHH-hCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
.....+.|+|.||--.+|.-+|++++.. .|.|...+|-+-+ -.|||.|.+.++|.+...+|||..... ..+..|.+
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK--ShCyV~yss~eEA~atr~AlhnV~WP~-sNPK~L~a 516 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK--SHCYVSYSSVEEAAATREALHNVQWPP-SNPKHLIA 516 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh--cceeEecccHHHHHHHHHHHhccccCC-CCCceeEe
Confidence 3355679999999999999999999995 5566666443333 379999999999999999999987651 12566666
Q ss_pred ecCC
Q 024269 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
++..
T Consensus 517 df~~ 520 (718)
T KOG2416|consen 517 DFVR 520 (718)
T ss_pred eecc
Confidence 6654
No 185
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.72 E-value=0.006 Score=48.62 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhCCceEEEEEeCCCC-----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 138 WQDLKDHMRKAGDVCFAEVSRDSEG-----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 138 ~~~l~~~f~~~g~i~~~~~~~~~~~-----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
++++.+.|.+||.|..|.|...+.. .-.||+|+..++|.+|+-.|||..++ |+.+..-+.+
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG----Gr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG----GRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec----ceeeeheecc
Confidence 4567889999999999888766443 27899999999999999999999998 8877665543
No 186
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.62 E-value=0.019 Score=36.72 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHhccC-----ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 17 DIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 17 ~~t~~~l~~~F~~~G-----~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++..+|..++...+ .|-.|.+. ..|+||+-... .|..++..|++..+.|++|.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 488999999998664 56677776 45899998654 888999999999999999999864
No 187
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.59 E-value=0.0036 Score=54.14 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=56.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh--ccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCC--CccCCeEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFY--KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~--~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v 77 (270)
...|.|.|+.||..+..|+|+-||. .|-++++|.+... .-=||+|++..||+.|.+.|.. ..|-|++|..
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 3567889999999999999999998 4889999988432 2369999999999999987754 5566776654
No 188
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.54 E-value=0.0011 Score=53.97 Aligned_cols=77 Identities=30% Similarity=0.534 Sum_probs=60.6
Q ss_pred ceEEEcCCCCCCCHHHHHH---HHhccCceEEEEEecCC------CCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 7 RTIYVGNLPSDIREYEVED---LFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~---~F~~~G~i~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
+-+||-+|+..+-.+++.+ .|.+||.|..|.+..+. ....-+||+|...++|..||...+|+.++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4578888998876666544 88899999999885432 11234899999999999999999999999999888
Q ss_pred EecCCC
Q 024269 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776544
No 189
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.53 E-value=0.0087 Score=40.53 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=44.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEE-E----------EeCCCCcEEEEEecChhhHHHHHHHhCCcccc
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAE-V----------SRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~-~----------~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
...|.|.+.|+. ....+.+.|++||.|.... + ......+...|.|.++.+|.+||. .||..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 456888899888 5577889999999987764 1 112223489999999999999999 6777776
No 190
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.52 E-value=0.011 Score=44.83 Aligned_cols=63 Identities=27% Similarity=0.264 Sum_probs=46.4
Q ss_pred CCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC--CCccCCeEEEEEecCCC
Q 024269 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELAHGG 83 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~~~~~ 83 (270)
-..+.|+++|..++.+..+..... -+-..|.|.+.++|..|...|+ +..+.|..|+|.+++..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hhHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 355789999999999988877532 4568999999999999999999 89999999999998654
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.52 E-value=0.029 Score=34.17 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=44.4
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHh---CCceEEEEEeCCCCcEEEEEecChhhHHHHHHHh
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKA---GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~---g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l 182 (270)
..|+|.|+.. ++.++|+.+|..| .....++++.+. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 5799999865 6778899999998 245577887776 7999999999999999865
No 192
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.50 E-value=0.0033 Score=49.15 Aligned_cols=75 Identities=27% Similarity=0.324 Sum_probs=60.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCcc----CCeEEEEEec
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNF----DGCRLRVELA 80 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~----~g~~l~v~~~ 80 (270)
..|+|.||+.-++-+.|.+-|+.||+|....++.+ ++..+-++|+|...-.|..|+..+.---| .+.+.-|...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 68999999999999999999999999988666544 57778899999999999999988743333 4556555554
Q ss_pred C
Q 024269 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 3
No 193
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.33 E-value=0.018 Score=46.26 Aligned_cols=73 Identities=16% Similarity=0.246 Sum_probs=56.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeE-EEEEecCCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-LRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-l~v~~~~~~ 83 (270)
...|-|-++|+... ..|..+|++||.|+..... ..-.+-+|.|.+.-+|++||. .||++|+|.. |=|..+.++
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 45677888887643 4578899999999887554 335689999999999999999 8999998754 456665544
No 194
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=95.99 E-value=0.0042 Score=52.69 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=63.6
Q ss_pred CCCceEEEcCCCCCC-CHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDI-REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~-t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.+.+.|-+..+|+.+ +-++|..-|.+||+|..|.+-.. .-.|.|+|.+..+|-.|.. .++..|+++.|+|.|.++
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 345667777777774 55889999999999999988443 3469999999999988888 899999999999999887
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 5
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.98 E-value=0.039 Score=48.05 Aligned_cols=55 Identities=18% Similarity=0.278 Sum_probs=48.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHH--hCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHh
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRK--AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~--~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l 182 (270)
+.|++.-||..+..++++.+|.. +.+++.|.+..+. -=||+|++..||+.|.+.|
T Consensus 176 cIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 176 CIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred eEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHH
Confidence 78888999999999999999976 6788889887765 4799999999999998865
No 196
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.75 E-value=0.0013 Score=55.00 Aligned_cols=79 Identities=19% Similarity=0.291 Sum_probs=67.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++.+.|.|+|+....+.|..|...||.|..|....+..-.-..-|+|...+.+..|+..|||..+....+.|.|.-..
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPde 157 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDE 157 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchh
Confidence 3567899999999999999999999999999987554433444558899999999999999999999999999887654
No 197
>PF06495 Transformer: Fruit fly transformer protein; InterPro: IPR010519 This family consists of transformer proteins from several Drosophila species and also from Ceratitis capitata (Mediterranean fruit fly). The transformer locus (tra) produces an RNA processing protein that alternatively splices the doublesex pre-mRNA in the sex determination hierarchy of Drosophila melanogaster [].; GO: 0006397 mRNA processing, 0046660 female sex differentiation, 0005634 nucleus
Probab=95.72 E-value=0.0098 Score=43.58 Aligned_cols=7 Identities=43% Similarity=0.444 Sum_probs=2.9
Q ss_pred CCCCCCc
Q 024269 258 RSVSPDK 264 (270)
Q Consensus 258 rsrs~~r 264 (270)
+|+|+.+
T Consensus 101 rSRS~~R 107 (182)
T PF06495_consen 101 RSRSRHR 107 (182)
T ss_pred hccCccc
Confidence 3444433
No 198
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.66 E-value=0.054 Score=39.13 Aligned_cols=53 Identities=15% Similarity=0.253 Sum_probs=43.9
Q ss_pred HHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 140 DLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 140 ~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
+|.+.|..||.+.-+.+..+ .-+|+|.+-..|.+|+. ++|.++. |..|.+..-
T Consensus 52 ~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~----g~~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVN----GRTLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEET----TEEEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEEC----CEEEEEEeC
Confidence 67788889999998888775 68999999999999999 9999998 888777653
No 199
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.65 E-value=0.023 Score=46.25 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=7.0
Q ss_pred CCCHHHHHHHHH
Q 024269 135 SASWQDLKDHMR 146 (270)
Q Consensus 135 ~~~~~~l~~~f~ 146 (270)
.+++++|.+++-
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 456666665554
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.14 E-value=0.3 Score=33.80 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=48.3
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhC-CceEEEEEeCCCCc--EEEEEecChhhHHHHHHHhCCcccc
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~g--~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
..+.+...|..++.++|..+.+.+- .|..+.+.++...+ .+.++|.+.+.|.+-...+||+.+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444555556666677766666654 56678888876543 8999999999999999999999997
No 201
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=94.84 E-value=0.02 Score=52.18 Aligned_cols=73 Identities=18% Similarity=0.174 Sum_probs=61.0
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCcc--CCeEEEEEecCCCC
Q 024269 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVELAHGGS 84 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--~g~~l~v~~~~~~~ 84 (270)
.++.|.+-+.+-.-|..+|.+||.|.+++...+ -..|.|+|...+.|..|++.|+|..+ -|-+.+|.+++.-.
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 344555667788889999999999999988654 56799999999999999999999776 58899999887553
No 202
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.59 E-value=0.12 Score=33.34 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=40.5
Q ss_pred eEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCC
Q 024269 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 184 (270)
..+|. .|......||.++|+.||.|.-..+ .+. -|||...+.+.|..++..+..
T Consensus 11 VFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 11 VFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-NDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp EEEEE---TT--HHHHHHHCCCCCCEEEEEE-CTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred EEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cCC---cEEEEeecHHHHHHHHHHhcc
Confidence 44554 9999999999999999999865554 332 899999999999999888764
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.77 E-value=0.15 Score=43.67 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=52.8
Q ss_pred ceEEecCCCCCC-CHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 125 YRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 125 ~~l~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
+.|.+...|..+ +.++|...|.+||.|..|.+-... -.|.|+|.+..+|-+|.. .++..++ ++.|.|..-+
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avln----nr~iKl~whn 444 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLN----NRFIKLFWHN 444 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceec----CceeEEEEec
Confidence 344455555444 678999999999999999886652 379999999999977766 6777777 6666666544
No 204
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.67 E-value=0.39 Score=41.04 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=58.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhC-CceEEEEEeCCCCc--EEEEEecChhhHHHHHHHhCCcccc
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~g--~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
...|+|-.+|..++..||..++..+- .|..+.++++.... .+.|+|.+.++|..-.+.+||+.+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999999875 67889988876553 8999999999999999999999997
No 205
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.48 E-value=0.37 Score=42.52 Aligned_cols=79 Identities=22% Similarity=0.380 Sum_probs=62.1
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhcc----CceEEEEEecC-------------CC-------------C-------
Q 024269 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP-------------PR-------------P------- 44 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~l~~~F~~~----G~i~~~~~~~~-------------~~-------------~------- 44 (270)
...++.|-|.||... +...||..+|+.| |.|..|.|..+ |. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 357899999999998 8999999999976 58999888431 11 0
Q ss_pred -----------------CceEEEEEccHHHHHHHHHhcCCCccC--CeEEEEEecC
Q 024269 45 -----------------PCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (270)
Q Consensus 45 -----------------~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~~~ 81 (270)
-=||.|+|.+.+.|......|+|+.|. +..|-+.|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIP 306 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIP 306 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecC
Confidence 027999999999999999999999996 4555555543
No 206
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=93.45 E-value=0.42 Score=31.47 Aligned_cols=70 Identities=21% Similarity=0.359 Sum_probs=44.8
Q ss_pred EEEEEccHHHHHHHHHhcCC--CccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024269 48 CFVEFENARDAEDAIRGRDG--YNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (270)
|+|+|.++.-|+..+. +.. ..+++..+.|............- .--...+..
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k~--------------------------qv~~~vs~r 53 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQKF--------------------------QVFSGVSKR 53 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceEE--------------------------EEEEcccCC
Confidence 6899999999999887 333 44566666665543221110000 001223457
Q ss_pred eEEecCCCCCCCHHHHHHH
Q 024269 126 RVIVRGLPSSASWQDLKDH 144 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~ 144 (270)
+|.|.|+|....+++|++.
T Consensus 54 tVlvsgip~~l~ee~l~D~ 72 (88)
T PF07292_consen 54 TVLVSGIPDVLDEEELRDK 72 (88)
T ss_pred EEEEeCCCCCCChhhheee
Confidence 8999999999999988765
No 207
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=92.44 E-value=0.26 Score=40.57 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=52.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhC--CceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCcccc
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
....++||+||-+.+|+++|.+.....| .+..+++..+..+ |||+|...+.....+.++.|-.+.++
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 3457999999999999999998888776 3444555444333 69999999988888888888888887
No 208
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.11 E-value=0.17 Score=38.32 Aligned_cols=80 Identities=15% Similarity=0.248 Sum_probs=49.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHH-hCCc---eEEEEEeCCCC------cEEEEEecChhhHHHHHHHhCCccccCccC
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRK-AGDV---CFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i---~~~~~~~~~~~------g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~ 192 (270)
....|.|.+||+.+|++++.+.++. ++.. ..+.-...... .-|||.|.+.+++..-...++|..+....+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~kg 85 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSKG 85 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TTS
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCCC
Confidence 3468999999999999999887766 5544 22221111111 289999999999999999999987763322
Q ss_pred C-ceeeeecCC
Q 024269 193 R-GRITVKRYD 202 (270)
Q Consensus 193 ~-~~i~v~~~~ 202 (270)
. ..-.|+.+.
T Consensus 86 ~~~~~~VE~Ap 96 (176)
T PF03467_consen 86 NEYPAVVEFAP 96 (176)
T ss_dssp -EEEEEEEE-S
T ss_pred CCcceeEEEcc
Confidence 2 333455554
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.11 E-value=1.1 Score=27.72 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=44.2
Q ss_pred CCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 17 ~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
.++.++|+..+..|+- ..|..-. .| -||.|.+..+|++.....+|..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788999999999964 4444432 34 489999999999999999999988877765
No 210
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=91.08 E-value=0.5 Score=42.40 Aligned_cols=66 Identities=17% Similarity=0.080 Sum_probs=58.0
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCcccc
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
..+.++..++||+|+...+..+-++.+...+|.|..+.... |+|..|.....+..|+..++...++
T Consensus 34 ~~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 34 FQPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred ccCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCC
Confidence 34556778999999999999999999999999998877665 9999999999999999988887776
No 211
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=90.92 E-value=0.22 Score=36.63 Aligned_cols=120 Identities=18% Similarity=0.146 Sum_probs=76.6
Q ss_pred EEEcCCC--CCCCHHHHHHHHhc-cCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCCC
Q 024269 9 IYVGNLP--SDIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSG 85 (270)
Q Consensus 9 l~v~nL~--~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~~ 85 (270)
..|+.+. ...+-..|.+.+.. ++....+.+..- ..++..++|.+.+++..++. .....++|..|.++.-.+...
T Consensus 18 ~lVg~~l~~~~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~ 94 (153)
T PF14111_consen 18 CLVGRVLSPKPISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFN 94 (153)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhccccc
Confidence 4444442 24667777776664 343334444221 25789999999999999988 566677887777765543210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCC-CCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 86 RGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
-.. ........-|.|.|||.. .+++-+..+.+.+|.+..++.....
T Consensus 95 ~~~-----------------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 95 PSE-----------------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred ccc-----------------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 000 001112345778899966 5778899999999999888876544
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.72 E-value=1.1 Score=34.07 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=44.2
Q ss_pred CHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhC--CccccCccCCceeeeecCC
Q 024269 137 SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 137 ~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~--~~~~~~~~~~~~i~v~~~~ 202 (270)
..+.|+++|..++.+..+...+.- +-..|.|.+.+.|..|...|+ +..+. |..+++.++.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~----g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFN----GKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEET----TEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccC----CCceEEEEcc
Confidence 457899999999988877776654 368999999999999999999 88887 7778877764
No 213
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=90.42 E-value=0.15 Score=41.66 Aligned_cols=7 Identities=14% Similarity=0.126 Sum_probs=2.9
Q ss_pred HHHHHhC
Q 024269 143 DHMRKAG 149 (270)
Q Consensus 143 ~~f~~~g 149 (270)
++|.-||
T Consensus 187 ~VCeVCG 193 (319)
T KOG0796|consen 187 RVCEVCG 193 (319)
T ss_pred hHHHhhh
Confidence 3444444
No 214
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=90.02 E-value=0.15 Score=41.61 Aligned_cols=8 Identities=0% Similarity=0.198 Sum_probs=3.3
Q ss_pred EEEEecCC
Q 024269 75 LRVELAHG 82 (270)
Q Consensus 75 l~v~~~~~ 82 (270)
|.|.|.++
T Consensus 163 mYiRYtqp 170 (453)
T KOG2888|consen 163 MYIRYTQP 170 (453)
T ss_pred eEEeecCC
Confidence 34444443
No 215
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.45 E-value=2.5 Score=34.38 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=46.8
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCcccc
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
..-|.|.++|+... .-|..+|.+||.|...... .++++-+|.|.+..+|++||. .+|..|+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 44666777776644 4567899999999765544 455699999999999999999 6677776
No 216
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=87.54 E-value=1.7 Score=31.36 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=45.6
Q ss_pred CCcceEEecCCCCCC----CHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCcc
Q 024269 122 HSEYRVIVRGLPSSA----SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~----~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~ 186 (270)
++..+|.|.=|..++ +...+...++.||+|..+...-.. -|.|.|.+...|-.|+.+++...
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 345677776555444 333455667889999998876543 79999999999999999987744
No 217
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=87.20 E-value=1.4 Score=35.62 Aligned_cols=169 Identities=12% Similarity=0.121 Sum_probs=97.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCC----------CCCceEEEEEccHHHHHHHHH----hcCC--C
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP----------RPPCYCFVEFENARDAEDAIR----GRDG--Y 68 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~----------~~~g~afV~f~~~~~a~~A~~----~l~g--~ 68 (270)
.++.|.+.|+...++-..+.+-|-+||+|+.|++.... +...-+.+.|-+.+.|..... .|.. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 46889999999999999999999999999999995432 335678999999999877543 2332 3
Q ss_pred ccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCcceEEecCCCCCCCHHH-HHHHH-
Q 024269 69 NFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGR-FGISRHSEYRVIVRGLPSSASWQD-LKDHM- 145 (270)
Q Consensus 69 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~~l~~~~~~~~-l~~~f- 145 (270)
.+.-..|.+.+..-..............+. ......-. .-.....+..|.|.=- ..+..++ +.+.+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~----------~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~ 162 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFS----------DYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLP 162 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchh----------hHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhh
Confidence 355666777666421000000000000000 00000000 0112334556666533 3333333 22222
Q ss_pred --HHhC----CceEEEEEeCCCC------cEEEEEecChhhHHHHHHHhCC
Q 024269 146 --RKAG----DVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 146 --~~~g----~i~~~~~~~~~~~------g~~~v~f~~~~~a~~a~~~l~~ 184 (270)
..-+ .++.+.++..... .||.+.|-+...|.+.+.-+..
T Consensus 163 fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~ 213 (309)
T PF10567_consen 163 FLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKS 213 (309)
T ss_pred hhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHh
Confidence 2223 2555666654322 3999999999999999887653
No 218
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=86.97 E-value=0.64 Score=34.78 Aligned_cols=75 Identities=21% Similarity=0.289 Sum_probs=55.2
Q ss_pred CceEEEcCCCCCC--CH---HHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCe-EEEEEe
Q 024269 6 SRTIYVGNLPSDI--RE---YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRVEL 79 (270)
Q Consensus 6 ~~~l~v~nL~~~~--t~---~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v~~ 79 (270)
.+++.+.+|+..+ +. .....+|.+|-+...+.+. ++.+..-|-|.+++.|..|...+++..|.|+ .+...+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~l---rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLL---RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHH---HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 4567788887763 22 2345567766665555554 2356677999999999999999999999888 888888
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
++..
T Consensus 87 aQ~~ 90 (193)
T KOG4019|consen 87 AQPG 90 (193)
T ss_pred ccCC
Confidence 8766
No 219
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=86.79 E-value=0.54 Score=43.43 Aligned_cols=71 Identities=17% Similarity=0.135 Sum_probs=56.1
Q ss_pred ecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 129 v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
+.|.+-..+-..|.-+|.+||.+..++..++-+ .|.|+|...+.|..|+++++|+++-. .|.+.+|.+++-
T Consensus 303 ~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~--~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 303 LENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSV--TGAPSRVSFAKT 373 (1007)
T ss_pred hhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccc--cCCceeEEeccc
Confidence 334444455667889999999999999877663 89999999999999999999998862 255667777763
No 220
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=86.52 E-value=0.31 Score=38.88 Aligned_cols=67 Identities=18% Similarity=0.371 Sum_probs=47.0
Q ss_pred CCCceEEEcCCCCC------------CCHHHHHHHHhccCceEEEEEec--------CCCC-----Cce---------EE
Q 024269 4 RFSRTIYVGNLPSD------------IREYEVEDLFYKYGRILDIELKI--------PPRP-----PCY---------CF 49 (270)
Q Consensus 4 ~~~~~l~v~nL~~~------------~t~~~l~~~F~~~G~i~~~~~~~--------~~~~-----~g~---------af 49 (270)
+-..||++.+||.. -+++-|...|..||.|..|.|.. +++. .|| ||
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 34568999999874 36778999999999999988832 2322 233 45
Q ss_pred EEEccHHHHHHHHHhcCCCcc
Q 024269 50 VEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~g~~~ 70 (270)
|+|-....-..||..|.|+.|
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 666666666777777777665
No 221
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=86.39 E-value=0.34 Score=39.66 Aligned_cols=9 Identities=11% Similarity=0.143 Sum_probs=3.5
Q ss_pred HHHHHHHhc
Q 024269 21 YEVEDLFYK 29 (270)
Q Consensus 21 ~~l~~~F~~ 29 (270)
.+|+.+|+.
T Consensus 172 ~dLw~WyEp 180 (453)
T KOG2888|consen 172 ADLWDWYEP 180 (453)
T ss_pred hHHHHHhhh
Confidence 334444433
No 222
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=86.18 E-value=0.32 Score=40.02 Aligned_cols=66 Identities=18% Similarity=0.194 Sum_probs=51.2
Q ss_pred CcceEEecCCCCCCCHHHHH---HHHHHhCCceEEEEEeCCC----Cc---EEEEEecChhhHHHHHHHhCCcccc
Q 024269 123 SEYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSE----GT---YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~----~g---~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
...-++|.+|+..+..+.+. +.|.+||.|..+.+..+.. .+ -++|+|+..++|..||...+|..++
T Consensus 76 qknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 76 QKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred hhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 33567788888777555543 5688889999888877652 11 6899999999999999999998887
No 223
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=85.22 E-value=5.4 Score=25.27 Aligned_cols=59 Identities=10% Similarity=0.239 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHhCC-----ceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 134 SSASWQDLKDHMRKAGD-----VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~-----i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
..++..+|..++...+. |-.+.+... |+||+-.. +.|..++..|++..+. |+.+.++.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~-~~a~~v~~~l~~~~~~----gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPE-EVAEKVLEALNGKKIK----GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-T-T-HHHHHHHHTT--SS----S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECH-HHHHHHHHHhcCCCCC----CeeEEEEEC
Confidence 45678888888877643 445666553 88988765 4889999999999998 888887753
No 224
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=84.82 E-value=8.9 Score=34.59 Aligned_cols=43 Identities=23% Similarity=0.349 Sum_probs=27.0
Q ss_pred CCCCCCcceEEecCCCCC-CCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 118 GISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
+.-......+.|.+++.. ++..---+++.++|++-.|.+.+..
T Consensus 55 G~LQenDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 55 GLLQENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred cccccCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 333445567888887743 3333344566788988887776643
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=84.41 E-value=4.8 Score=26.30 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=41.5
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhc
Q 024269 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
-|+-.++..++..+|++.++. || +|..|..........-|||.+....+|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 344467889999999999986 56 6777776444333456999999998888765433
No 226
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.23 E-value=2.6 Score=35.68 Aligned_cols=58 Identities=12% Similarity=0.260 Sum_probs=45.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHh
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRG 64 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~ 64 (270)
+--+.|-|.++|...-.+||...|+.|+. ..++|+.-. ...||-.|.+...|..||..
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhhc
Confidence 34588999999999999999999999974 333332211 34799999999999999993
No 227
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=82.36 E-value=7.1 Score=25.04 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=39.9
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHH
Q 024269 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-|+-.++..++..+|++.++. || +|..|........-.-|||++...++|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 455568899999999999986 55 66777664333334469999998888877544
No 228
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=81.35 E-value=9.8 Score=23.58 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=38.7
Q ss_pred CCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCcccc
Q 024269 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
..++.++++..+..|+- ..+..+.. --||.|.+..+|+++....++..+-
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~t--GfYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRT--GFYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCC--EEEEEECChHHHHHHHHhcCCCEEE
Confidence 45678899999998863 23444443 3689999999999999999998876
No 229
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=80.72 E-value=0.7 Score=42.65 Aligned_cols=8 Identities=13% Similarity=0.227 Sum_probs=3.5
Q ss_pred ceEEEEEc
Q 024269 46 CYCFVEFE 53 (270)
Q Consensus 46 g~afV~f~ 53 (270)
.|+.+...
T Consensus 60 ~y~~t~~~ 67 (1194)
T KOG4246|consen 60 VYGSTSLS 67 (1194)
T ss_pred cccccchh
Confidence 34444443
No 230
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=78.15 E-value=2.3 Score=29.77 Aligned_cols=56 Identities=18% Similarity=0.264 Sum_probs=28.8
Q ss_pred eEEEcCCCCC---------CCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccH-HHHHHHHH
Q 024269 8 TIYVGNLPSD---------IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA-RDAEDAIR 63 (270)
Q Consensus 8 ~l~v~nL~~~---------~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~-~~a~~A~~ 63 (270)
++.|-|++.. ++.++|.+.|..|..+.-.-+.......|++.|+|... .--..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 3456677543 45678999999998775444433345578999999754 33444555
No 231
>PF14893 PNMA: PNMA
Probab=77.68 E-value=3 Score=35.01 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=36.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhc-cCceEEEEE----ecCCCCCceEEEEEccH
Q 024269 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIEL----KIPPRPPCYCFVEFENA 55 (270)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~-~G~i~~~~~----~~~~~~~g~afV~f~~~ 55 (270)
|.-+.-+.|.|.+||.++++++|.+.+.. +-+.-...+ ........-|+|+|...
T Consensus 13 m~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 13 MGVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred cCcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 55577899999999999999999998764 222222233 11122244689998754
No 232
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.58 E-value=6.8 Score=31.70 Aligned_cols=46 Identities=28% Similarity=0.359 Sum_probs=35.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCc-eEEEEEecCCCCCceEEEEEccH
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~-i~~~~~~~~~~~~g~afV~f~~~ 55 (270)
+-|+|+||+.++-..||+..+.+.|- ...+... ...|-||+-|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee---cCCcceeEecCCc
Confidence 56999999999999999999988663 3444443 3367899999764
No 233
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=74.94 E-value=8.2 Score=23.49 Aligned_cols=20 Identities=20% Similarity=0.399 Sum_probs=17.0
Q ss_pred HHHHHHHHhccCceEEEEEe
Q 024269 20 EYEVEDLFYKYGRILDIELK 39 (270)
Q Consensus 20 ~~~l~~~F~~~G~i~~~~~~ 39 (270)
..+|+++|+..|+|.-+.+.
T Consensus 8 ~~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 8 TAEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHHhcCcEEEEEEc
Confidence 36799999999999888773
No 234
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.48 E-value=9.2 Score=32.55 Aligned_cols=55 Identities=9% Similarity=0.041 Sum_probs=46.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCC-ceEEEEEeCCCCcEEEEEecChhhHHHHHHH
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 181 (270)
...|-|.++|.....+||...|..|+. --.|.++.+. .+|..|.+...|..|+-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 458889999999999999999999864 4557777765 899999999999999985
No 235
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=74.39 E-value=7.7 Score=31.39 Aligned_cols=16 Identities=19% Similarity=0.073 Sum_probs=6.3
Q ss_pred EEEccHHHHHHHHHhc
Q 024269 50 VEFENARDAEDAIRGR 65 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l 65 (270)
|-|+|..-++-.+..|
T Consensus 57 lgfEDdVViefvynqL 72 (354)
T KOG2146|consen 57 LGFEDDVVIEFVYNQL 72 (354)
T ss_pred hccccchhHHHHHHHH
Confidence 3344443333333333
No 236
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=74.37 E-value=0.35 Score=42.40 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=54.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeE
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
..++|++.|++++++.++|..+...+-.+..+.+... .....+++|.|.-.-....|+..||+.-+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 4688999999999999999999999887777776322 233457889998777777777778876665443
No 237
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=72.45 E-value=11 Score=24.73 Aligned_cols=49 Identities=18% Similarity=0.199 Sum_probs=35.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEF 52 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f 52 (270)
+...-|||+|++..+-+.-...+.+..+.-.-+-+..+....||+|-..
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 5677899999998887776666666565544455555556789999877
No 238
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=71.57 E-value=3.9 Score=34.48 Aligned_cols=65 Identities=22% Similarity=0.367 Sum_probs=48.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC------CCCCceEEEEEccHHHHHHHHHhcCCCcc
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
-..|.|.+||+..++.+|.+-...+-.-++.....+ ....+.|||.|..+++.......++|..|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 357889999999999999888777643333222111 12356799999999999999998998665
No 239
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=67.13 E-value=4.7 Score=31.66 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=30.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~ 38 (270)
.+..+||+-|||..+|++.|..+.+++|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 56789999999999999999999999996665544
No 240
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=66.90 E-value=33 Score=22.44 Aligned_cols=56 Identities=14% Similarity=0.087 Sum_probs=42.6
Q ss_pred EEecCCCCCCCHHHHHHHHHH-hC-CceEEEEEeCCCC-cEEEEEecChhhHHHHHHHh
Q 024269 127 VIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 127 l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l 182 (270)
.|+...+..++..+|++.++. || .|..+.....+.+ .-|+|.+.....|.+...++
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 455556788999999999988 56 5677766655544 48999999999998876654
No 241
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=66.56 E-value=27 Score=21.23 Aligned_cols=48 Identities=15% Similarity=0.248 Sum_probs=32.0
Q ss_pred CHHHHHHHHhccC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCC
Q 024269 19 REYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 19 t~~~l~~~F~~~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 68 (270)
.-.+|.++|.+.| .|.++.....+. ++..-+.+.+.+.|.+++. -+|.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~-~~G~ 62 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK-EAGF 62 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH-HCCC
Confidence 4467888888776 777877644433 4666667777777777776 3443
No 242
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=66.39 E-value=23 Score=30.32 Aligned_cols=78 Identities=17% Similarity=0.351 Sum_probs=57.1
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhcc----CceEEEEEecC-------------CC---------------------
Q 024269 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP-------------PR--------------------- 43 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~l~~~F~~~----G~i~~~~~~~~-------------~~--------------------- 43 (270)
+.++..|-|-||..+ +...+|..+|+.| |++..|.|..+ |-
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn 222 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDN 222 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCcc
Confidence 467888999999987 8889999999865 56666666211 10
Q ss_pred ---------------CCc-------------------eEEEEEccHHHHHHHHHhcCCCccCC--eEEEEEec
Q 024269 44 ---------------PPC-------------------YCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (270)
Q Consensus 44 ---------------~~g-------------------~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~~ 80 (270)
-.| ||.|+|.+.+.+......|+|..+.. ..+-+.|.
T Consensus 223 ~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 223 VFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred chhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 012 78899999999999999999988853 44444444
No 243
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=64.28 E-value=28 Score=25.37 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=36.6
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHH
Q 024269 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.|+--++..++..+|.+.++. |+ .|..|..........-|||.+....+|.....
T Consensus 84 ~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ 140 (145)
T PTZ00191 84 TLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVAN 140 (145)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 334457788999999999986 54 55666554333333459999987777655433
No 244
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=61.38 E-value=4.4 Score=26.76 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHh
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFY 28 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~ 28 (270)
..++|.|.|||..+.+++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 568999999999999999987554
No 245
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=60.11 E-value=14 Score=27.77 Aligned_cols=46 Identities=15% Similarity=0.101 Sum_probs=32.5
Q ss_pred CCHHHHHHHHhcc-CceEEEEEecC--C--CCCceEEEEEccHHHHHHHHH
Q 024269 18 IREYEVEDLFYKY-GRILDIELKIP--P--RPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 18 ~t~~~l~~~F~~~-G~i~~~~~~~~--~--~~~g~afV~f~~~~~a~~A~~ 63 (270)
.|+++|..+.... |.+..|.+... + ..+|-.||+|.+.++|.+.++
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 4555555544422 68888888432 2 457889999999999998776
No 246
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=59.59 E-value=21 Score=24.05 Aligned_cols=51 Identities=16% Similarity=0.150 Sum_probs=32.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEcc
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~ 54 (270)
+...-|||++++..+-+.--..+-+.++.-.-+-+..+....||+|-++-+
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~ 75 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGE 75 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCC
Confidence 456789999988777665444444555543333334555667999888754
No 247
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=59.41 E-value=34 Score=23.13 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=38.5
Q ss_pred CCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCC
Q 024269 16 SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
.+-++++|..+...-|.|.+|.+..+....-.|.+...+..|++..++.|+.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 3456788888888778999999965543344577889999999999997763
No 248
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=59.07 E-value=45 Score=21.38 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=42.5
Q ss_pred eEEecCCCCCCCHHHHHHHHHH-hC-CceEEEEEeCCCC-cEEEEEecChhhHHHHHHHh
Q 024269 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l 182 (270)
..|+..++...+..+|+..++. || .|..+....-+.+ .-|+|.+.....|.+...++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 3556667889999999999987 56 5666665555443 48999999988888776654
No 249
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=57.88 E-value=35 Score=19.74 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=29.9
Q ss_pred HHHHHHHHhccC-ceEEEEEecCCCCCceEEEEEccHHHHHHHH
Q 024269 20 EYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 20 ~~~l~~~F~~~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
-.++.++|.+.| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 345667777766 7777776544445677778888888777765
No 250
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=55.70 E-value=27 Score=29.23 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=23.9
Q ss_pred EEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 48 CFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
|||+|.+..+|+.|.+.+.... +..+.|+.|.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999544332 244566555443
No 251
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=54.90 E-value=49 Score=27.00 Aligned_cols=50 Identities=14% Similarity=0.108 Sum_probs=36.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCc-eEEEEEeCCCCcEEEEEecChh
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSEGTYGVVDYTNPE 173 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~g~~~v~f~~~~ 173 (270)
....-|+++||+.++...+|+..+.+.+-+ ..+.+.- .-+.||+.|.+..
T Consensus 328 ~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg--~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 328 GAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKG--HFGKCFLHFGNRK 378 (396)
T ss_pred ccccceeeccCccccchHHHHHHHHhcCCCceeEeeec--CCcceeEecCCcc
Confidence 344579999999999999999999887643 3333322 2258999997754
No 252
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=52.61 E-value=36 Score=22.14 Aligned_cols=28 Identities=36% Similarity=0.520 Sum_probs=22.7
Q ss_pred CCCCCceEEEEEccHHHHHHHHHhcCCC
Q 024269 41 PPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~A~~~l~g~ 68 (270)
.+..+||.|||=.++.++..|+..+.+.
T Consensus 40 ~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 40 PDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp -TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred eCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 3457999999999999999999877654
No 253
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=50.13 E-value=98 Score=28.84 Aligned_cols=101 Identities=12% Similarity=0.063 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCCCCC--CCCCCCC
Q 024269 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRG--PSSSDRR 94 (270)
Q Consensus 17 ~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~~~~--~~~~~~~ 94 (270)
.+++.+|..++..-+.|..-.|-.-.-...|.||+-.... |...+..|++..+.|+.|.|+.+....... .......
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~~~~s~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM-PGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGR 576 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEeCCceEEEcChhh-HHHHHHHhccccccCCceEEEECCCCCCCcccccCCCCC
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCC
Q 024269 95 GGYGGGGAGGAGGAGAGAGAGRFG 118 (270)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~ 118 (270)
+..++...++.+.+.....+...+
T Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~ 600 (629)
T PRK11634 577 GFGGERREGGRNFSGERREGGRGD 600 (629)
T ss_pred CCCCCCCCCCcCCCCCCCCCCccc
No 254
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=49.32 E-value=39 Score=22.25 Aligned_cols=51 Identities=16% Similarity=0.125 Sum_probs=30.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhc-cCceEEEEEecCCCCCceEEEEEcc
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~-~G~i~~~~~~~~~~~~g~afV~f~~ 54 (270)
+...-|||++++..+-+.--..+-+. .++-.-+-+..+....||+|-++-+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEecCC
Confidence 46678999988877766543333333 2332223334455667888877654
No 255
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.49 E-value=2.9 Score=35.86 Aligned_cols=75 Identities=7% Similarity=-0.141 Sum_probs=54.4
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+...++..||..++++++..+|..||.|..+.+.. ++...-.+||.-.+ .+|...|.-+-...++|..++|.++.
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~ 80 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSP 80 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCc
Confidence 34567888999999999999999999999888832 33445567776544 34555555566677778888887765
No 256
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=47.12 E-value=45 Score=29.90 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=43.1
Q ss_pred EEcCCCCCCCH---HHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEE
Q 024269 10 YVGNLPSDIRE---YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 10 ~v~nL~~~~t~---~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (270)
+||||+.-... ..|.++=.+||+|..+++= ..-.|.-.+.+.|+.|+. -|+..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 45666554333 4455566689999988882 124678889999999999 78899998886
No 257
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=45.02 E-value=69 Score=19.93 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=40.2
Q ss_pred HHHHHHHhccC-ceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 21 YEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~l~~~F~~~G-~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
++|.+-|...| +|..+.-+. +..+...-||+.+...+...+ ++=..+.+..|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i---~~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEI---YKIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccce---eehHhhCCeEEEEecCCCC
Confidence 56788888888 666655433 345667788888776664444 4445678888998876543
No 258
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=44.72 E-value=66 Score=19.02 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=41.3
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccH----HHHHHHHHh
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA----RDAEDAIRG 64 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 64 (270)
|+.|.||.-.--...|.+.+...-.|..+.+... .+.+-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 5788888888888899999999888999888543 46788888744 555556653
No 259
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=44.62 E-value=86 Score=24.22 Aligned_cols=60 Identities=17% Similarity=0.162 Sum_probs=40.0
Q ss_pred CCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhc-CCCccC--CeEEEEE
Q 024269 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR-DGYNFD--GCRLRVE 78 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~--g~~l~v~ 78 (270)
.+.++..+++..++.-. +.|+.++-..|-+.+...+.++|..|+..+ ....|+ +..|.|+
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~~~~~fg~~~~~vvIE 86 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIFVDRKFGDAGSKVVIE 86 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHHTSSTTCCCGSSEEEE
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhccccccCCCCCcEEEE
Confidence 46778888888776433 566777766566677779999999998765 323333 3444444
No 260
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=44.47 E-value=32 Score=21.58 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=22.7
Q ss_pred ceEEEEEccHHHHHHHHHhcCCCccCCeE
Q 024269 46 CYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
.+++|.|.+..+|.+|-+.|...-+..+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~l 30 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRL 30 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEE
Confidence 36899999999999999988765554433
No 261
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=43.42 E-value=20 Score=19.15 Aligned_cols=17 Identities=18% Similarity=0.432 Sum_probs=10.3
Q ss_pred CCCCHHHHHHHHhccCc
Q 024269 16 SDIREYEVEDLFYKYGR 32 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G~ 32 (270)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999987653
No 262
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=43.37 E-value=74 Score=29.08 Aligned_cols=6 Identities=83% Similarity=0.949 Sum_probs=2.5
Q ss_pred CCCCCC
Q 024269 257 SRSVSP 262 (270)
Q Consensus 257 ~rsrs~ 262 (270)
+++++|
T Consensus 186 s~~~~p 191 (1027)
T KOG3580|consen 186 SRSPSP 191 (1027)
T ss_pred CCCCCC
Confidence 344443
No 263
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=41.70 E-value=1e+02 Score=20.37 Aligned_cols=47 Identities=9% Similarity=-0.016 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhC-CceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCC
Q 024269 138 WQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 138 ~~~l~~~f~~~g-~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 184 (270)
.+.++++++..| ++..+.+..........+++.+.+.|.++.-.+..
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~~ 69 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIRS 69 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHHc
Confidence 456777888875 78888888877766788888888887776655433
No 264
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=40.55 E-value=30 Score=29.44 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=47.5
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCC-ceEEEEEeCCCC------cEEEEEecChhhHHHHHHHhCCcccc
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~------g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
..+.|.+||+..+++++.+....+-. +.+..+...... +.+||.|..+++...-...++|..+-
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 57888999999999999888887643 333444322111 37999999999988888888887765
No 265
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=39.95 E-value=33 Score=24.87 Aligned_cols=34 Identities=15% Similarity=0.150 Sum_probs=28.6
Q ss_pred eEEEcCCCCC-CCHHHHHHHHhccCceEEEEEecC
Q 024269 8 TIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIP 41 (270)
Q Consensus 8 ~l~v~nL~~~-~t~~~l~~~F~~~G~i~~~~~~~~ 41 (270)
-|.|.|||.. .+++-|.++-+.+|++..+.....
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 3677899998 788889999999999999988543
No 266
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=39.04 E-value=25 Score=26.56 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=46.9
Q ss_pred ceEEecCCCCCCC-----HHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 125 YRVIVRGLPSSAS-----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~~l~~~~~-----~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
..+.+.+++..+. ......+|.++.+.....+.+.. +...|.|.+++.|..|..+++...+.+ +..+...
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~~---~~~~k~y 85 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFNG---KNELKLY 85 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccCC---CceEEEE
Confidence 3456666665442 23345666666554444443332 377889999999999999999999983 2255555
Q ss_pred cCC
Q 024269 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
++.
T Consensus 86 faQ 88 (193)
T KOG4019|consen 86 FAQ 88 (193)
T ss_pred Ecc
Confidence 554
No 267
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=39.03 E-value=1.2e+02 Score=20.23 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=22.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-ceEEEEE
Q 024269 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIEL 38 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~-~G-~i~~~~~ 38 (270)
.|+-.++..+|..||++.|+. || +|..|..
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT 53 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNT 53 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEE
Confidence 444467889999999999986 55 5666655
No 268
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=38.61 E-value=7.8 Score=34.47 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=51.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCcccc
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
...+.|++.|++++++.++|..+|..+..+..+.+-..... ...+|.|.---....|+-+|++..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 45578999999999999999999999876655544333221 27889998888888888888887775
No 269
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.40 E-value=38 Score=28.51 Aligned_cols=6 Identities=67% Similarity=0.844 Sum_probs=2.3
Q ss_pred CCCCCC
Q 024269 258 RSVSPD 263 (270)
Q Consensus 258 rsrs~~ 263 (270)
++|||+
T Consensus 87 ~sRs~s 92 (426)
T KOG2812|consen 87 RSRSPS 92 (426)
T ss_pred cccCCC
Confidence 333333
No 270
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=36.42 E-value=1.1e+02 Score=25.16 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=44.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC-----------CcEEEEEecChhhHHH
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----------GTYGVVDYTNPEDMKY 177 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-----------~g~~~v~f~~~~~a~~ 177 (270)
...|...|+...++--.+...|.+||+|+.+.++.+.. .....+.|-+.+.+..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 45788899999999999999999999999999988761 1267888888877653
No 271
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=36.37 E-value=82 Score=19.72 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=39.3
Q ss_pred HHHHHHHhccC-ceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 21 YEVEDLFYKYG-RILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 21 ~~l~~~F~~~G-~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
++|.+-|..+| ++..+.-+.. ..+...-||+-....+... .|+=..++|+.+.|+....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCcc
Confidence 46888899888 6666655432 3456677788776544444 3555678899999986543
No 272
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.64 E-value=49 Score=27.64 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEEecChhhHHHHHHHhCCcc
Q 024269 165 GVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 165 ~~v~f~~~~~a~~a~~~l~~~~ 186 (270)
|||.|.+..+|+.|++.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 6999999999999999766655
No 273
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=34.52 E-value=61 Score=26.34 Aligned_cols=29 Identities=28% Similarity=0.141 Sum_probs=23.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEE
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILD 35 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~ 35 (270)
-...|+|||+++|..-|..++...-.+..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~ 124 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQD 124 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccce
Confidence 46789999999999999999987544433
No 274
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.00 E-value=2e+02 Score=26.28 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=53.8
Q ss_pred CCCCcceEEecCCCCC-CCHHHHHHHHHHh----CCceEEEEEeC--------------C-------------C------
Q 024269 120 SRHSEYRVIVRGLPSS-ASWQDLKDHMRKA----GDVCFAEVSRD--------------S-------------E------ 161 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~i~~~~~~~~--------------~-------------~------ 161 (270)
...++.+|.|.|+.+. +...+|.-+|..| |.|..|.|... + .
T Consensus 170 ~~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee 249 (650)
T KOG2318|consen 170 LGEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEE 249 (650)
T ss_pred cccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhh
Confidence 3456789999999975 5778898888765 46777777421 1 0
Q ss_pred ---------C---------cEEEEEecChhhHHHHHHHhCCcccc
Q 024269 162 ---------G---------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 ---------~---------g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
. .||.|+|.+++.|...+..+.|.++.
T Consensus 250 ~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 250 EEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 0 18999999999999999999999997
No 275
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=33.79 E-value=41 Score=30.06 Aligned_cols=40 Identities=40% Similarity=0.586 Sum_probs=35.3
Q ss_pred CCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 44 PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 44 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
...++++.|++++.+.+|+..++|..+.+..+.++.+...
T Consensus 62 ~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 62 MPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 3579999999999999999999999999988888877654
No 276
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=33.55 E-value=3.9e+02 Score=24.73 Aligned_cols=99 Identities=14% Similarity=0.071 Sum_probs=58.8
Q ss_pred CHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC--CCc-----c-CCeEEEEEecCCCCCCCCCC
Q 024269 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYN-----F-DGCRLRVELAHGGSGRGPSS 90 (270)
Q Consensus 19 t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~-----~-~g~~l~v~~~~~~~~~~~~~ 90 (270)
-.++|.+.|..-+.|..|.+.- .||-++......-+......+. +.. + .|++|.|+++.+.
T Consensus 59 iA~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN------- 127 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN------- 127 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC-------
Confidence 3445555555544566777742 2444444443333333333333 222 2 5789999997754
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhC-CceEEEEEeCC
Q 024269 91 SDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS 160 (270)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~ 160 (270)
+..-++|+.+-..+--+.|..++...| .|+....+.|-
T Consensus 128 --------------------------------ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 128 --------------------------------PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred --------------------------------CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 112477888878888888999999988 56666665553
No 277
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=33.00 E-value=3.8e+02 Score=25.11 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=35.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhc---cCceEEEEEecCCCCCceEE-EEEccHHHHHHHHHhc
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~---~G~i~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~~l 65 (270)
.++|.|+.||+.++.+.|.+.... -|.+. |.=..+....+..| |++....+++..+..|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHH
Confidence 468999999999999988876543 24443 22222222234444 4555555555555433
No 278
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=32.86 E-value=1.6e+02 Score=20.10 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHH
Q 024269 21 YEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 21 ~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|..++..+| |.+-.|..+ ....-||++++.|.+..-++|.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 35778888887 455555333 3457799999996665555554
No 279
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=32.51 E-value=1.3e+02 Score=23.40 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=36.6
Q ss_pred CCHHHHHHHHhccCc---eEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC
Q 024269 18 IREYEVEDLFYKYGR---ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~---i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
.|.+++.+....+|. |....+..-++.++-+...-.++++|..+...|=|..+.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 577888888887764 344444444566664444456899999998888888775
No 280
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=32.05 E-value=1.1e+02 Score=20.25 Aligned_cols=48 Identities=15% Similarity=0.245 Sum_probs=31.1
Q ss_pred EEEcCCCCCCCHHHHHHHHhc-cC-ceEEEEEec-C------CCC------CceEEEEEccHH
Q 024269 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKI-P------PRP------PCYCFVEFENAR 56 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~-~------~~~------~g~afV~f~~~~ 56 (270)
.|+-.++..+|..||++.++. || .|..|.... . +.. ..-|+|++...+
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~ 84 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGD 84 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTS
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCC
Confidence 344467889999999999986 66 566665521 1 110 135888887663
No 281
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=31.31 E-value=2.1e+02 Score=20.94 Aligned_cols=57 Identities=14% Similarity=0.114 Sum_probs=40.4
Q ss_pred eEEecCCCCCCCHHHHHHHHHH-hC-CceEEEEEeCCCC-cEEEEEecChhhHHHHHHHh
Q 024269 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l 182 (270)
..++..++...+..+|++.++. |+ .|..+..+..+.+ .-|||.+....+|.....++
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~ki 142 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANKI 142 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 4556667888999999999987 55 5666665554443 48999998887766554443
No 282
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=31.09 E-value=1.4e+02 Score=18.82 Aligned_cols=39 Identities=28% Similarity=0.396 Sum_probs=27.9
Q ss_pred HHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCcc
Q 024269 26 LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 26 ~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
-+.+||.|..+.-. ..| .|-|.+.++++..++.|....|
T Consensus 16 ~L~kfG~i~Y~Skk-----~kY-vvlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKY-VVLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC-----ccE-EEEEECHHHHHHHHHHHhcCCC
Confidence 35679999887543 234 3567899999999988876554
No 283
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=30.50 E-value=25 Score=30.09 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=43.9
Q ss_pred CceEEEcCCCCCCCHH--------HHHHHHhc--cCceEEEEEec---CCCCCceEEEEEccHHHHHHHHH
Q 024269 6 SRTIYVGNLPSDIREY--------EVEDLFYK--YGRILDIELKI---PPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~--------~l~~~F~~--~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+.+|+.++....+.+ ++...|.. .+++..+.+.. .....|..|++|...+.|++++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 3556677776664444 89999998 67777777743 35678889999999999999874
No 284
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=30.20 E-value=1.7e+02 Score=26.44 Aligned_cols=59 Identities=17% Similarity=0.274 Sum_probs=38.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHh----ccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcC
Q 024269 8 TIYVGNLPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~----~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+.++.-..+.+--+|..+|. .+|-|..+.++.. .......++.|.+.++|..|+..+.
T Consensus 191 i~~~~~~~~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 191 ALTLGSDALDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred EEEeCCccCCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 344433222333456777776 6788888888443 2334667889999999999987653
No 285
>PRK02886 hypothetical protein; Provisional
Probab=30.18 E-value=1.5e+02 Score=19.51 Aligned_cols=38 Identities=18% Similarity=0.332 Sum_probs=27.7
Q ss_pred HhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCcc
Q 024269 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 27 F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
+.+||.|..+.-. ..| .|-|-+.++|+..++.|....|
T Consensus 21 LrkyG~I~Y~Skr-----~kY-vvlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 21 LRKFGNVHYVSKR-----LKY-AVLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HhhcCcEEEEecc-----ccE-EEEEECHHHHHHHHHHHhcCCC
Confidence 4679999887543 224 3667899999999998876554
No 286
>PRK02302 hypothetical protein; Provisional
Probab=30.12 E-value=1.5e+02 Score=19.63 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=27.5
Q ss_pred HhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCcc
Q 024269 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 27 F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
+.+||.|..+.-. ..| .|-|-+.++|+..++.|....|
T Consensus 23 LrkfG~I~Y~Skk-----~kY-vvlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRY-LVLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEecc-----ccE-EEEEECHHHHHHHHHHHhcCCC
Confidence 5679999887543 234 3667899999999998876543
No 287
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=30.11 E-value=1.7e+02 Score=19.56 Aligned_cols=54 Identities=17% Similarity=0.353 Sum_probs=32.2
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc--------CceEEEEEe--------cCCCCCc-eEEEEEccHHHHHHHHH
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKY--------GRILDIELK--------IPPRPPC-YCFVEFENARDAEDAIR 63 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~--------G~i~~~~~~--------~~~~~~g-~afV~f~~~~~a~~A~~ 63 (270)
++|| |.++++++++..+...+ |.|..+.-. -.+...| |.++.|.-..++.+.++
T Consensus 10 ~~~I--l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 10 TMYL--LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred EEEE--ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4444 45777777776665443 466555431 1233455 67788987777776665
No 288
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=29.29 E-value=2.1e+02 Score=20.35 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=48.6
Q ss_pred CCceEEEcCCCCC---CCHHHHHHHHhccC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 5 FSRTIYVGNLPSD---IREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nL~~~---~t~~~l~~~F~~~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
+.-.|.|...... .+...+.+.+..-| .++.+... .+...|.|.+.++-.+|.+.|....=++-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4556777766433 56678888888776 44555443 336889999999999998877765545555555544
Q ss_pred C
Q 024269 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 3
No 289
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=29.15 E-value=67 Score=26.11 Aligned_cols=68 Identities=12% Similarity=0.189 Sum_probs=45.0
Q ss_pred CCCcceEEecCCCCC------------CCHHHHHHHHHHhCCceEEEEEeC---------CCCc--------------EE
Q 024269 121 RHSEYRVIVRGLPSS------------ASWQDLKDHMRKAGDVCFAEVSRD---------SEGT--------------YG 165 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~------------~~~~~l~~~f~~~g~i~~~~~~~~---------~~~g--------------~~ 165 (270)
...+.+|++.++|-. .+++.|...|..||.|..+.++.- ...| -|
T Consensus 146 gerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffea 225 (445)
T KOG2891|consen 146 GERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEA 225 (445)
T ss_pred CCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHH
Confidence 334457888887732 356789999999999988877531 1111 24
Q ss_pred EEEecChhhHHHHHHHhCCcccc
Q 024269 166 VVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 166 ~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
||+|....--..|+..|.|..+.
T Consensus 226 yvqfmeykgfa~amdalr~~k~a 248 (445)
T KOG2891|consen 226 YVQFMEYKGFAQAMDALRGMKLA 248 (445)
T ss_pred HHHHHHHHhHHHHHHHHhcchHH
Confidence 55555556666777777777664
No 290
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=28.95 E-value=98 Score=18.89 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=31.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceE-EEEEeCCCCcEEEE-EecChhhHHHHHHHhC
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDSEGTYGVV-DYTNPEDMKYAIRKLD 183 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~~g~~~v-~f~~~~~a~~a~~~l~ 183 (270)
.+.|.|..+...-..+.+...+...|.-.. ..+.....-...++ .|.+.++|..++.+|.
T Consensus 4 ~y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 4 GYYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred cEEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 355666655544444445555555554332 22222222112333 6899999999999888
No 291
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=28.83 E-value=67 Score=20.98 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=11.6
Q ss_pred CCCCHHHHHHHHHHhCC
Q 024269 134 SSASWQDLKDHMRKAGD 150 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~ 150 (270)
...+.+++.+++..|..
T Consensus 60 ~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDA 76 (85)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 45577778887777743
No 292
>PRK11901 hypothetical protein; Reviewed
Probab=28.69 E-value=2.5e+02 Score=23.67 Aligned_cols=68 Identities=19% Similarity=0.289 Sum_probs=41.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCc---EE--EEEecChhhHHHHHHHhCCcccc-CccC
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YG--VVDYTNPEDMKYAIRKLDDTEFR-NPWA 192 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g---~~--~v~f~~~~~a~~a~~~l~~~~~~-~~~~ 192 (270)
....++|-|..+ ..++.|..+..+++ +..+++......| |. +-.|.+.++|..|+..|-..... ++|-
T Consensus 242 p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~lqa~~PWv 315 (327)
T PRK11901 242 PASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEVQAKKPWV 315 (327)
T ss_pred CCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHHHhCCCCc
Confidence 344566666654 44777877777765 3344544443333 33 33689999999999988654433 4444
No 293
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=28.47 E-value=91 Score=18.23 Aligned_cols=27 Identities=19% Similarity=0.135 Sum_probs=22.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCce
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRI 33 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i 33 (270)
..++|.+.....+.++|.+++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888887788999999999998863
No 294
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=28.23 E-value=2.1e+02 Score=19.96 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.2
Q ss_pred CCCCCCHHHHHHHHhccCceEEEEE
Q 024269 14 LPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 14 L~~~~t~~~l~~~F~~~G~i~~~~~ 38 (270)
||+-+++ |-++|+.=|+|..|..
T Consensus 11 lPPYTnK--LSDYfeSPGKI~svIt 33 (145)
T TIGR02542 11 LPPYTNK--LSDYFESPGKIQSVIT 33 (145)
T ss_pred cCCccch--hhHHhcCCCceEEEEE
Confidence 6776654 8899999999998754
No 295
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=28.22 E-value=20 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.296 Sum_probs=17.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHh
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFY 28 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~ 28 (270)
.-+++||||+||..+-.+.=..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3578999999998866655444444
No 296
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=27.83 E-value=2.8e+02 Score=21.32 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=28.3
Q ss_pred EEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 50 VEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
+.|.+.++|...++ -.|..|....|.|....+.
T Consensus 47 ~I~qs~e~ai~~lE-~e~KlWreteI~I~~g~p~ 79 (238)
T PF10915_consen 47 IIFQSAEDAIRILE-EEGKLWRETEIKIQSGKPS 79 (238)
T ss_pred hhccCHHHHHHHHH-HhcchheeeeEEEecCCcc
Confidence 57899999999999 7899999999999876644
No 297
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=27.46 E-value=55 Score=20.01 Aligned_cols=18 Identities=33% Similarity=0.685 Sum_probs=10.8
Q ss_pred CHHHHHHHHhccCceEEE
Q 024269 19 REYEVEDLFYKYGRILDI 36 (270)
Q Consensus 19 t~~~l~~~F~~~G~i~~~ 36 (270)
|--|+.+++.+||.++.+
T Consensus 3 tlyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 3 TLYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp SHHHHHHHHHTTS-----
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 445889999999987654
No 298
>PHA01632 hypothetical protein
Probab=27.40 E-value=73 Score=18.80 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=16.7
Q ss_pred EEEcCCCCCCCHHHHHHHHhc
Q 024269 9 IYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~ 29 (270)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 445688999999999987754
No 299
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=26.85 E-value=23 Score=29.75 Aligned_cols=52 Identities=15% Similarity=-0.013 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCC
Q 024269 16 SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~ 68 (270)
+.++...|.+++.+.|.|..-.+..+=+ -|.+||-...+++++++++.|.+.
T Consensus 271 ~~~~~p~iF~~i~~~G~v~~~EM~rtFN-mGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 271 PSWPPPPIFKWLQKAGNVEREEMYRTFN-MGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCCCcHHHHHHHHhcCCCHHHHHHHhc-CccceEEEEcHHHHHHHHHHHHhc
No 300
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=26.27 E-value=78 Score=25.61 Aligned_cols=28 Identities=32% Similarity=0.617 Sum_probs=23.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHh--ccCce
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFY--KYGRI 33 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~--~~G~i 33 (270)
...+.|+|||++++..-|.+++. .+|.+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~ 126 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRV 126 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEE
T ss_pred CceEEEEEecccchHHHHHHHhhccccccc
Confidence 56789999999999999999987 45543
No 301
>PF15063 TC1: Thyroid cancer protein 1
Probab=26.23 E-value=45 Score=21.16 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.4
Q ss_pred EEcCCCCCCCHHHHHHHHhccCce
Q 024269 10 YVGNLPSDIREYEVEDLFYKYGRI 33 (270)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~~G~i 33 (270)
-+.||=.+++.++|..||..-|..
T Consensus 29 asaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 29 ASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhccCHHHHHHHHHHccch
Confidence 456788899999999999998864
No 302
>PF11061 DUF2862: Protein of unknown function (DUF2862); InterPro: IPR021291 This family of proteins has no known function.
Probab=25.88 E-value=1.7e+02 Score=18.05 Aligned_cols=35 Identities=29% Similarity=0.345 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHhc--cCceEEEEEecCCCCCceE-EEEEccH
Q 024269 17 DIREYEVEDLFYK--YGRILDIELKIPPRPPCYC-FVEFENA 55 (270)
Q Consensus 17 ~~t~~~l~~~F~~--~G~i~~~~~~~~~~~~g~a-fV~f~~~ 55 (270)
-++. +|.+.+.. .|.|...++. +| .|.+ .|+|.+.
T Consensus 15 Ri~~-~l~~~l~~~~~g~I~~fKmt-DG--~giG~vv~~~ng 52 (64)
T PF11061_consen 15 RIPK-ELVDKLGKNPIGTIKGFKMT-DG--SGIGVVVEFSNG 52 (64)
T ss_pred hccH-HHHHHhccCCcEEEEEEEEe-cC--CcEEEEEEecCC
Confidence 3444 45555665 8889988875 22 4544 4677653
No 303
>cd06405 PB1_Mekk2_3 The PB1 domain is present in the two mitogen-activated protein kinase kinases MEKK2 and MEKK3 which are two members of the signaling kinase cascade involved in angiogenesis and early cardiovascular development. The PB1 domain of MEKK2 (and/or MEKK3) interacts with the PB1 domain of another member of the kinase cascade Map2k5. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, f
Probab=25.73 E-value=1.9e+02 Score=18.49 Aligned_cols=62 Identities=18% Similarity=0.252 Sum_probs=43.8
Q ss_pred cCCCCCCCHHHHHHHHh-ccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 12 GNLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 12 ~nL~~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
-.+|..+.-+||.+-.. .||.-.++..... .-.|-..+++|-++|++.++. .-+-+.|++-.
T Consensus 14 i~f~RPvkf~dl~~kv~~afGq~mdl~ytn~-----eL~iPl~~Q~DLDkAie~ld~-s~~~ksLRilL 76 (79)
T cd06405 14 IQFPRPVKFKDLQQKVTTAFGQPMDLHYTNN-----ELLIPLKNQEDLDRAIELLDR-SPHMKSLRILL 76 (79)
T ss_pred EecCCCccHHHHHHHHHHHhCCeeeEEEecc-----cEEEeccCHHHHHHHHHHHcc-CccccceeEeE
Confidence 35667777778776554 7998888766432 267888999999999997765 44445555544
No 304
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.48 E-value=1.5e+02 Score=17.31 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=24.8
Q ss_pred HHHHHHHhccC-ceEEEEEecCC-CCCceEEEEEccHHHHHHHHH
Q 024269 21 YEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 21 ~~l~~~F~~~G-~i~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|.++|.++| .|..+...... .......+..++.+.+.++++
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 56777787776 66666553322 123344555567666666666
No 305
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=25.13 E-value=1.6e+02 Score=17.62 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=27.8
Q ss_pred CHHHHHHHHhccC-ceEEEEEecCC-CCCceEEEEEccHHHHHHHHHhc
Q 024269 19 REYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 19 t~~~l~~~F~~~G-~i~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.-.+|.++|..+| .|..+...... ...+...+.+...++.+.+++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 4567888898887 66666553321 12455667776554555555443
No 306
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=25.09 E-value=1.3e+02 Score=20.09 Aligned_cols=55 Identities=16% Similarity=0.103 Sum_probs=36.9
Q ss_pred CCCCCCCHHHHHHHHHHhCCc-eEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCc
Q 024269 131 GLPSSASWQDLKDHMRKAGDV-CFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 131 ~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~ 185 (270)
.+-+.++...|...|..-|.- ....+-+|--.-+|-|.|.+.+.+..|...|...
T Consensus 19 S~~p~l~~~~i~~Q~~~~gkk~~pp~lRkD~W~pm~vv~f~~~~~g~~~yq~Lrel 74 (91)
T PF12829_consen 19 SQTPNLDNNQILKQFPFPGKKNKPPSLRKDYWRPMCVVNFPNYEVGVSAYQKLREL 74 (91)
T ss_pred ecCcccChhHHHHhccCCCcccCCchhccccceEeEEEECCChHHHHHHHHHHHHH
Confidence 345667777777777766632 2233334433349999999999999999877543
No 307
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=24.78 E-value=1.6e+02 Score=17.30 Aligned_cols=45 Identities=9% Similarity=0.063 Sum_probs=24.8
Q ss_pred EEcCCCCCCCHHHHHHHHhccC-ceEEEEEecCC-CCCceEEEEEcc
Q 024269 10 YVGNLPSDIREYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFEN 54 (270)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~~G-~i~~~~~~~~~-~~~g~afV~f~~ 54 (270)
.|..-...-.-.+|.++|..+| .|..+...... .......+.+.+
T Consensus 3 ~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~ 49 (71)
T cd04879 3 LIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDS 49 (71)
T ss_pred EEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCC
Confidence 3433333445677888898876 67777664432 223334444444
No 308
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=24.44 E-value=2e+02 Score=18.34 Aligned_cols=62 Identities=13% Similarity=0.205 Sum_probs=39.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhcc-------CceEEEEEec-CCCCCceEEEEEccHHHHHHHHHhcCCCcc
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKY-------GRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~-------G~i~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
-|-..+||..+|.++|...-..- ..|.-+.... ....+-||+.+=.+++.+.++-+ -.|+.+
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~-~aG~p~ 71 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR-RAGLPA 71 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH-HcCCCc
Confidence 35667899989999998877543 2333333322 23446677777788888888776 346554
No 309
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=24.24 E-value=24 Score=21.87 Aligned_cols=38 Identities=21% Similarity=0.232 Sum_probs=25.8
Q ss_pred HHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhc
Q 024269 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 21 ~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
++|.+.|..++....+. +-.+|..|.+.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHh
Confidence 57788887654433321 124899999999998877654
No 310
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=24.15 E-value=1.5e+02 Score=18.99 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=17.0
Q ss_pred CceEEEEEccHHHHHHHHHhcCCC
Q 024269 45 PCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~g~ 68 (270)
.+..+|.|+..++-++|.. |.|.
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g~ 76 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRGC 76 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT-
T ss_pred CCEEEEEEcCCCCHHHHHh-hCCC
Confidence 6689999999999999988 6653
No 311
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.25 E-value=3.1e+02 Score=20.18 Aligned_cols=53 Identities=19% Similarity=0.335 Sum_probs=38.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhc---cCceEEEEEec------------CCCCCc-eEEEEEccHHHH
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKI------------PPRPPC-YCFVEFENARDA 58 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~---~G~i~~~~~~~------------~~~~~g-~afV~f~~~~~a 58 (270)
...|++..++..+++++.+++.+. .+++..|.+-. +...+. |-+|.|++-...
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFetG~~l 155 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFETGKEL 155 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEeccchhh
Confidence 368999999999999999998885 35677776611 222334 888999876543
No 312
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.17 E-value=1.8e+02 Score=17.49 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=26.0
Q ss_pred CHHHHHHHHhccC-ceEEEEEecC-CCCCceEEEEEc--cHHHHHHHHH
Q 024269 19 REYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFE--NARDAEDAIR 63 (270)
Q Consensus 19 t~~~l~~~F~~~G-~i~~~~~~~~-~~~~g~afV~f~--~~~~a~~A~~ 63 (270)
.-..|.++|..+| .|..+..... .......+|.+. +.+++.+++.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~ 62 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLR 62 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHH
Confidence 4467888888887 6776655433 222333444554 5556666665
No 313
>PF09702 Cas_Csa5: CRISPR-associated protein (Cas_Csa5); InterPro: IPR010157 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor family of Cas protein found in various species of Sulfolobus and Pyrococcus (all archaeal). It is found with two different CRISPR loci in Sulfolobus solfataricus.
Probab=22.95 E-value=1.2e+02 Score=20.65 Aligned_cols=23 Identities=39% Similarity=0.556 Sum_probs=15.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHh
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFY 28 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~ 28 (270)
..+.+.++++.||. ++|+.+|+.
T Consensus 61 ekeg~~i~~g~lPt---~~eVe~Fl~ 83 (105)
T PF09702_consen 61 EKEGNYIIVGYLPT---DEEVEDFLD 83 (105)
T ss_pred cCCCCEEecCCCCC---hHHHHHHHH
Confidence 35668899999994 555555554
No 314
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=22.89 E-value=3.8e+02 Score=24.69 Aligned_cols=41 Identities=20% Similarity=0.096 Sum_probs=34.7
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeC
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~ 159 (270)
++......+|+.+|..++.++...++......++++.+++.
T Consensus 296 PEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 296 PEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeecc
Confidence 34445679999999999999999999999988999998875
No 315
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=22.54 E-value=2.9e+02 Score=19.51 Aligned_cols=49 Identities=12% Similarity=0.154 Sum_probs=29.3
Q ss_pred HHHHHHHhccC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCcc
Q 024269 21 YEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 21 ~~l~~~F~~~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
.-|.+.|..++ .+.+++-..+.+.+..-++.-++.+.|..|++ -.|..+
T Consensus 84 ~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLe-d~gi~~ 133 (142)
T COG4747 84 SRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALE-DAGIKL 133 (142)
T ss_pred HHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHH-HcCCee
Confidence 44566666655 44555444444445566666677788888888 455544
No 316
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=21.86 E-value=34 Score=20.36 Aligned_cols=36 Identities=19% Similarity=0.226 Sum_probs=16.8
Q ss_pred CCceEEEEEcc-HHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 44 PPCYCFVEFEN-ARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 44 ~~g~afV~f~~-~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
++|||||...+ .+|.--.-..|++.+-++ .+.|...
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~gD-~V~v~i~ 43 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMDGD-KVLVRIT 43 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-TT--EEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCCCC-EEEEEEe
Confidence 48999999887 222211223355444334 4444443
No 317
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=21.85 E-value=5.6e+02 Score=22.84 Aligned_cols=57 Identities=18% Similarity=0.215 Sum_probs=33.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhcc---CceEEEEEecCC-CCCceEE-EEEccHHHHHHHHH
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKY---GRILDIELKIPP-RPPCYCF-VEFENARDAEDAIR 63 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~---G~i~~~~~~~~~-~~~g~af-V~f~~~~~a~~A~~ 63 (270)
++|.|+.||+.++.+.+.+..... +++..|.=..+. ...+..| |++.....++..+.
T Consensus 226 ~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~ 287 (445)
T cd00187 226 NTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLN 287 (445)
T ss_pred ceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCCceEEEEEECCCccHHHHHH
Confidence 689999999999999888766532 332222111221 1135666 45555555554444
No 318
>PF12993 DUF3877: Domain of unknown function, E. rectale Gene description (DUF3877); InterPro: IPR024539 This entry represents proteins of unknown function found primarily in Firmicutes. The Eubacterium rectale gene appears to be upregulated in the presence of Bacteroides thetaiotaomicron compared to growth in pure culture [].
Probab=21.36 E-value=2e+02 Score=21.63 Aligned_cols=18 Identities=22% Similarity=0.296 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHhccCce
Q 024269 16 SDIREYEVEDLFYKYGRI 33 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~G~i 33 (270)
..+|-++|.++|.+|++-
T Consensus 107 hgcT~e~I~~~F~~ys~~ 124 (175)
T PF12993_consen 107 HGCTLEDILELFHKYSDN 124 (175)
T ss_pred CCcCHHHHHHHHHHhcCC
Confidence 468999999999999863
No 319
>PHA03075 glutaredoxin-like protein; Provisional
Probab=21.31 E-value=2e+02 Score=20.13 Aligned_cols=30 Identities=23% Similarity=0.487 Sum_probs=16.4
Q ss_pred HHHHHhccCceEEEEE-ecCCCCCceEEEEEc
Q 024269 23 VEDLFYKYGRILDIEL-KIPPRPPCYCFVEFE 53 (270)
Q Consensus 23 l~~~F~~~G~i~~~~~-~~~~~~~g~afV~f~ 53 (270)
|-++|..+|. ..+.+ +.++..+..|||.|.
T Consensus 59 Inn~~~~lgn-e~v~lfKydp~t~qmA~V~i~ 89 (123)
T PHA03075 59 INNFFKHLGN-EYVSLFKYDPETKQMAFVDIS 89 (123)
T ss_pred HHHHHHhhcc-cEEEEEEEcCCCCcEEEEehh
Confidence 4555666652 33333 455566667777653
No 320
>PRK15464 cold shock-like protein CspH; Provisional
Probab=20.96 E-value=76 Score=19.88 Aligned_cols=11 Identities=9% Similarity=-0.006 Sum_probs=8.3
Q ss_pred CCceEEEEEcc
Q 024269 44 PPCYCFVEFEN 54 (270)
Q Consensus 44 ~~g~afV~f~~ 54 (270)
.+||+||+=.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 38999997554
No 321
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=20.85 E-value=6.5e+02 Score=24.66 Aligned_cols=59 Identities=15% Similarity=0.183 Sum_probs=34.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhc---cCceEEEEEecCCCCCceEE-EEEccHHHHHHHHHhc
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~---~G~i~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~~l 65 (270)
..+|.|+.||+.++.+.|.+-... -|.|. |.-..+....+.-| |+.....+++..+..|
T Consensus 241 ~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~~~vrivI~lk~~~~~~~~~~~L 303 (869)
T PRK12758 241 KKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTAADVEILVHLAPGVSPDKTIDAL 303 (869)
T ss_pred CCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCCCceEEEEEeCCCCCHHHHHHHH
Confidence 568999999999888877665542 35554 32223222234444 5555555555555544
No 322
>PF07237 DUF1428: Protein of unknown function (DUF1428); InterPro: IPR009874 This family consists of several hypothetical bacterial and one archaeal sequence of around 120 residues in length. The function of this family is unknown.; PDB: 2OKQ_A.
Probab=20.37 E-value=3e+02 Score=18.86 Aligned_cols=44 Identities=11% Similarity=0.208 Sum_probs=28.2
Q ss_pred HHHHHHhccCceEEEEE----ecCC--------------CCCceEEEEEccHHHHHHHHHhc
Q 024269 22 EVEDLFYKYGRILDIEL----KIPP--------------RPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 22 ~l~~~F~~~G~i~~~~~----~~~~--------------~~~g~afV~f~~~~~a~~A~~~l 65 (270)
...++|..||.+..+.. ...| ..--|.+|+|.+.+..+++...+
T Consensus 24 ~a~~vf~e~GAl~~vE~wgdDvp~G~~TsF~~Av~a~~~E~VVFSWi~wpska~rD~~~~k~ 85 (103)
T PF07237_consen 24 KAAEVFKEHGALRVVECWGDDVPDGKVTSFPRAVKAKPDETVVFSWIEWPSKATRDAANAKM 85 (103)
T ss_dssp HHHHHHHHTT-SEEEEEEEEE----SS--HHHHTT--TTEEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCEEEEEeecCcCCcCccCCHHHHhcCCCCCEEEEEEEEcCCHHHHHHHHHHh
Confidence 34678999996655443 1112 22348999999999998887654
No 323
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=20.17 E-value=2.6e+02 Score=18.79 Aligned_cols=45 Identities=22% Similarity=0.241 Sum_probs=26.0
Q ss_pred eEEEcCCCCCCCHHHHHH---HHhccCceEEEEE-----ecCCCCCceEEEEE
Q 024269 8 TIYVGNLPSDIREYEVED---LFYKYGRILDIEL-----KIPPRPPCYCFVEF 52 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~---~F~~~G~i~~~~~-----~~~~~~~g~afV~f 52 (270)
..|+.|||.++.+.++.. .+..++.-..|.. .....+.|++.+-+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 357889999988877654 5555554455544 12334556555443
No 324
>PRK11901 hypothetical protein; Reviewed
Probab=20.10 E-value=2.1e+02 Score=24.10 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=35.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCC-CC-ceEE--EEEccHHHHHHHHHhcCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPR-PP-CYCF--VEFENARDAEDAIRGRDG 67 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~-~~-g~af--V~f~~~~~a~~A~~~l~g 67 (270)
-+|.|-.+ -.++.|..|..+++ +..+++..+.. .+ =|.. =.|.+.++|..|+..|-.
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCH
Confidence 45555443 45777888888775 34555544321 11 1322 268999999999998864
Done!