Query 024269
Match_columns 270
No_of_seqs 289 out of 2577
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 05:19:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 6.3E-35 2.2E-39 228.5 16.6 163 4-203 13-180 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 9.5E-34 3.3E-38 219.7 19.4 194 4-200 2-203 (205)
3 1b7f_A Protein (SXL-lethal pro 100.0 2.2E-33 7.6E-38 211.8 19.7 160 5-201 2-168 (168)
4 3md3_A Nuclear and cytoplasmic 100.0 2.7E-33 9.1E-38 210.8 19.4 159 7-202 1-165 (166)
5 1fxl_A Paraneoplastic encephal 100.0 4.4E-33 1.5E-37 209.9 19.9 158 5-201 1-167 (167)
6 1l3k_A Heterogeneous nuclear r 100.0 4.5E-33 1.5E-37 215.4 18.8 168 4-206 11-185 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 3.9E-32 1.3E-36 221.8 24.8 195 4-202 7-281 (282)
8 3nmr_A Cugbp ELAV-like family 100.0 7.3E-33 2.5E-37 210.3 18.3 163 5-202 2-175 (175)
9 2adc_A Polypyrimidine tract-bi 100.0 4.2E-32 1.4E-36 214.8 22.1 194 4-203 32-227 (229)
10 2qfj_A FBP-interacting repress 100.0 2.3E-32 7.8E-37 214.6 19.1 173 5-205 27-206 (216)
11 1qm9_A Polypyrimidine tract-bi 100.0 3.3E-32 1.1E-36 210.9 19.5 193 5-203 2-196 (198)
12 2yh0_A Splicing factor U2AF 65 100.0 2.3E-31 7.8E-36 206.1 23.2 179 4-205 2-195 (198)
13 2g4b_A Splicing factor U2AF 65 100.0 7.2E-32 2.5E-36 204.3 19.8 155 4-201 2-171 (172)
14 1fje_B Nucleolin RBD12, protei 100.0 1.5E-32 5E-37 208.7 11.4 161 4-203 11-173 (175)
15 2cjk_A Nuclear polyadenylated 100.0 2.5E-32 8.7E-37 205.8 12.6 158 4-203 1-165 (167)
16 3sde_A Paraspeckle component 1 100.0 8.1E-31 2.8E-35 211.4 17.7 157 4-204 20-179 (261)
17 3smz_A Protein raver-1, ribonu 100.0 1.9E-30 6.3E-35 212.1 18.3 166 4-205 93-265 (284)
18 3smz_A Protein raver-1, ribonu 100.0 7.1E-30 2.4E-34 208.6 20.0 151 4-203 20-174 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 3.9E-30 1.4E-34 210.9 16.9 167 5-204 116-291 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 9.3E-30 3.2E-34 208.7 18.1 153 4-203 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 5.3E-25 1.8E-29 154.9 10.1 109 5-140 4-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 1.4E-22 4.8E-27 173.5 19.3 81 4-84 100-183 (437)
23 4fxv_A ELAV-like protein 1; RN 99.9 3.9E-23 1.3E-27 141.1 9.6 78 5-82 18-98 (99)
24 3lqv_A PRE-mRNA branch site pr 99.9 8.6E-23 2.9E-27 143.8 9.1 106 2-150 4-109 (115)
25 1x4a_A Splicing factor, argini 99.9 1.6E-21 5.5E-26 135.9 12.3 81 3-83 19-99 (109)
26 2lxi_A RNA-binding protein 10; 99.9 2.4E-22 8.2E-27 135.1 7.4 79 6-84 1-84 (91)
27 1sjq_A Polypyrimidine tract-bi 99.9 1E-21 3.5E-26 133.8 10.2 79 3-84 13-93 (105)
28 3s8s_A Histone-lysine N-methyl 99.9 1.3E-21 4.5E-26 136.0 10.3 81 3-83 3-86 (110)
29 3r27_A HnRNP L, heterogeneous 99.9 1.9E-21 6.5E-26 131.1 10.6 77 4-83 19-97 (100)
30 2wbr_A GW182, gawky, LD47780P; 99.9 1.7E-21 5.9E-26 126.5 9.8 75 4-81 5-79 (89)
31 2fy1_A RNA-binding motif prote 99.9 4.2E-21 1.4E-25 135.0 12.6 84 1-84 2-87 (116)
32 2hvz_A Splicing factor, argini 99.9 1.3E-21 4.4E-26 134.5 9.6 76 7-84 1-76 (101)
33 2i2y_A Fusion protein consists 99.9 3.8E-21 1.3E-25 141.8 12.8 138 42-204 10-148 (150)
34 2kn4_A Immunoglobulin G-bindin 99.9 4.1E-21 1.4E-25 142.9 12.9 144 36-205 3-151 (158)
35 2dgu_A Heterogeneous nuclear r 99.9 9.5E-21 3.3E-25 130.5 13.4 79 4-87 9-87 (103)
36 2a3j_A U1 small nuclear ribonu 99.9 3E-21 1E-25 137.2 11.1 80 4-83 27-110 (127)
37 2dnz_A Probable RNA-binding pr 99.9 8.8E-21 3E-25 128.8 13.0 81 3-83 2-85 (95)
38 1whw_A Hypothetical protein ri 99.9 7.5E-21 2.6E-25 130.1 12.6 81 4-84 6-89 (99)
39 2cpf_A RNA binding motif prote 99.9 3.9E-21 1.3E-25 131.3 10.7 81 3-83 2-88 (98)
40 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.2E-20 4.2E-25 130.0 13.0 81 4-84 13-94 (103)
41 3pgw_S U1-70K; protein-RNA com 99.9 1.6E-21 5.5E-26 166.9 10.3 77 122-202 100-180 (437)
42 1x4d_A Matrin 3; structural ge 99.9 2.8E-21 9.4E-26 131.7 9.2 77 4-83 13-92 (102)
43 2x1f_A MRNA 3'-END-processing 99.9 5.9E-21 2E-25 129.9 10.7 79 5-83 1-82 (96)
44 2dgo_A Cytotoxic granule-assoc 99.8 1.9E-20 6.3E-25 131.8 13.3 82 4-85 13-97 (115)
45 2dgs_A DAZ-associated protein 99.8 1.6E-20 5.6E-25 128.4 12.5 80 4-84 8-90 (99)
46 2ad9_A Polypyrimidine tract-bi 99.8 5.3E-21 1.8E-25 133.6 10.1 80 3-85 28-109 (119)
47 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.9E-21 2E-25 126.9 10.0 78 4-81 5-85 (85)
48 2d9p_A Polyadenylate-binding p 99.8 8.2E-21 2.8E-25 130.9 10.9 82 3-84 12-94 (103)
49 2dnm_A SRP46 splicing factor; 99.8 7.3E-21 2.5E-25 131.2 10.6 81 4-84 11-94 (103)
50 1nu4_A U1A RNA binding domain; 99.8 2.4E-21 8.2E-26 132.1 8.1 83 1-83 3-89 (97)
51 2cq1_A PTB-like protein L; RRM 99.8 1.4E-20 4.7E-25 128.4 11.8 78 4-84 13-92 (101)
52 3md1_A Nuclear and cytoplasmic 99.8 7.9E-21 2.7E-25 125.7 10.2 78 6-83 1-81 (83)
53 2cq3_A RNA-binding protein 9; 99.8 2.4E-20 8.3E-25 128.5 13.0 81 4-84 13-94 (103)
54 2dgx_A KIAA0430 protein; RRM d 99.8 1.2E-20 4.2E-25 128.2 11.3 80 4-83 7-90 (96)
55 2lkz_A RNA-binding protein 5; 99.8 2E-21 6.8E-26 131.1 7.2 79 4-82 7-94 (95)
56 1x5t_A Splicing factor 3B subu 99.8 8.7E-21 3E-25 129.1 10.4 82 3-84 2-87 (96)
57 2cqb_A Peptidyl-prolyl CIS-tra 99.8 7.1E-21 2.4E-25 131.0 10.0 81 4-84 10-93 (102)
58 1x5u_A Splicing factor 3B subu 99.8 1.8E-20 6.2E-25 129.7 12.1 81 4-84 13-96 (105)
59 2e5h_A Zinc finger CCHC-type a 99.8 1.3E-20 4.3E-25 127.8 10.9 78 4-81 14-94 (94)
60 2do0_A HnRNP M, heterogeneous 99.8 3E-20 1E-24 130.5 13.2 81 4-84 13-95 (114)
61 2dgv_A HnRNP M, heterogeneous 99.8 1E-20 3.5E-25 127.7 10.3 81 3-83 5-86 (92)
62 2cq0_A Eukaryotic translation 99.8 7.6E-21 2.6E-25 131.1 9.8 81 4-84 13-96 (103)
63 2cqd_A RNA-binding region cont 99.8 5E-20 1.7E-24 129.8 14.1 79 4-83 15-96 (116)
64 3bs9_A Nucleolysin TIA-1 isofo 99.8 6.8E-21 2.3E-25 127.2 9.2 80 4-83 4-86 (87)
65 2do4_A Squamous cell carcinoma 99.8 1.4E-20 4.9E-25 129.0 10.9 80 4-83 15-96 (100)
66 4a8x_A RNA-binding protein wit 99.8 1.3E-20 4.5E-25 126.0 10.4 80 4-83 2-85 (88)
67 1x5s_A Cold-inducible RNA-bind 99.8 1.3E-20 4.5E-25 129.6 10.5 80 4-83 10-92 (102)
68 2cpz_A CUG triplet repeat RNA- 99.8 1E-20 3.6E-25 133.1 10.1 82 4-85 23-107 (115)
69 1wex_A Hypothetical protein (r 99.8 2E-20 6.9E-25 128.3 11.1 78 4-84 13-92 (104)
70 2cph_A RNA binding motif prote 99.8 2.9E-20 1E-24 129.1 12.0 81 4-84 13-98 (107)
71 1wi8_A EIF-4B, eukaryotic tran 99.8 2.4E-20 8.2E-25 128.8 11.3 80 3-84 12-95 (104)
72 2dnq_A RNA-binding protein 4B; 99.8 3.8E-20 1.3E-24 124.3 11.9 75 4-83 6-80 (90)
73 2cqc_A Arginine/serine-rich sp 99.8 1.3E-20 4.4E-25 128.0 9.3 79 4-82 13-94 (95)
74 1x4h_A RNA-binding protein 28; 99.8 3.9E-20 1.3E-24 129.3 11.9 80 4-83 13-101 (111)
75 2dnh_A Bruno-like 5, RNA bindi 99.8 2.5E-20 8.5E-25 129.0 10.7 82 4-85 13-99 (105)
76 1p27_B RNA-binding protein 8A; 99.8 1.6E-20 5.3E-25 130.2 9.5 80 4-83 21-103 (106)
77 2dgt_A RNA-binding protein 30; 99.8 5.1E-20 1.8E-24 124.2 11.7 76 3-83 7-82 (92)
78 2ywk_A Putative RNA-binding pr 99.8 1.8E-20 6.1E-25 127.3 9.3 79 4-82 14-94 (95)
79 2dgp_A Bruno-like 4, RNA bindi 99.8 3.5E-20 1.2E-24 128.4 10.9 82 3-84 10-97 (106)
80 1why_A Hypothetical protein ri 99.8 4.6E-20 1.6E-24 125.7 11.3 77 4-83 15-93 (97)
81 1x4c_A Splicing factor, argini 99.8 9.4E-20 3.2E-24 126.6 13.1 77 4-84 13-94 (108)
82 2div_A TRNA selenocysteine ass 99.8 1.2E-20 4E-25 129.2 8.3 82 2-83 5-94 (99)
83 2kxn_B Transformer-2 protein h 99.8 1.8E-20 6.3E-25 134.1 9.6 80 4-83 44-126 (129)
84 1s79_A Lupus LA protein; RRM, 99.8 2.4E-20 8.1E-25 128.0 9.2 79 4-83 9-89 (103)
85 2dnp_A RNA-binding protein 14; 99.8 6.7E-20 2.3E-24 123.1 11.3 75 4-83 7-81 (90)
86 1oo0_B CG8781-PA, drosophila Y 99.8 3E-20 1E-24 129.7 9.7 80 4-83 24-106 (110)
87 2jrs_A RNA-binding protein 39; 99.8 2.5E-20 8.4E-25 129.4 9.2 80 4-83 24-106 (108)
88 3p5t_L Cleavage and polyadenyl 99.8 3.7E-21 1.2E-25 129.2 4.8 77 7-83 2-83 (90)
89 1x4f_A Matrin 3; structural ge 99.8 2.2E-20 7.6E-25 129.0 8.8 78 3-83 22-102 (112)
90 2khc_A Testis-specific RNP-typ 99.8 2.8E-20 9.6E-25 131.5 9.4 78 4-81 38-118 (118)
91 2dng_A Eukaryotic translation 99.8 5.6E-20 1.9E-24 126.7 10.7 79 3-83 12-93 (103)
92 3ns6_A Eukaryotic translation 99.8 1.2E-20 4.1E-25 129.2 7.1 80 4-83 4-93 (100)
93 3ulh_A THO complex subunit 4; 99.8 4.2E-20 1.4E-24 128.3 10.0 78 4-81 27-106 (107)
94 2cpe_A RNA-binding protein EWS 99.8 4.6E-20 1.6E-24 129.4 10.2 81 4-84 13-104 (113)
95 2dis_A Unnamed protein product 99.8 1.4E-19 4.7E-24 126.1 12.5 83 3-85 5-94 (109)
96 2cpi_A CCR4-NOT transcription 99.8 2.3E-20 7.9E-25 130.3 8.5 80 4-83 13-101 (111)
97 2jvr_A Nucleolar protein 3; RN 99.8 3.3E-20 1.1E-24 128.6 9.0 79 4-83 26-105 (111)
98 1x4g_A Nucleolysin TIAR; struc 99.8 1.2E-19 4E-24 126.4 11.9 78 4-84 23-100 (109)
99 2nlw_A Eukaryotic translation 99.8 4.5E-20 1.5E-24 127.5 9.6 80 4-83 13-100 (105)
100 2la6_A RNA-binding protein FUS 99.8 3.3E-20 1.1E-24 126.9 8.6 78 4-81 11-99 (99)
101 2xnq_A Nuclear polyadenylated 99.8 9.9E-20 3.4E-24 123.8 10.9 75 4-83 20-95 (97)
102 2cpx_A Hypothetical protein FL 99.8 6.7E-20 2.3E-24 128.9 10.2 80 4-84 23-106 (115)
103 2err_A Ataxin-2-binding protei 99.8 3.9E-20 1.3E-24 128.7 8.9 80 4-83 27-107 (109)
104 3ucg_A Polyadenylate-binding p 99.8 8.4E-20 2.9E-24 122.4 10.2 78 5-83 5-85 (89)
105 2krb_A Eukaryotic translation 99.8 2.3E-20 7.7E-25 122.8 7.2 72 6-77 1-80 (81)
106 2ytc_A PRE-mRNA-splicing facto 99.8 7.1E-20 2.4E-24 121.6 9.7 75 4-81 10-85 (85)
107 3ex7_B RNA-binding protein 8A; 99.8 5.2E-20 1.8E-24 131.6 9.6 80 4-83 20-102 (126)
108 3s7r_A Heterogeneous nuclear r 99.8 8.1E-20 2.8E-24 121.9 9.9 76 4-80 9-87 (87)
109 2cpj_A Non-POU domain-containi 99.8 7.4E-20 2.5E-24 125.1 9.9 77 4-83 13-89 (99)
110 2cq2_A Hypothetical protein LO 99.8 7.4E-20 2.5E-24 126.4 9.9 79 2-83 21-106 (114)
111 2fc9_A NCL protein; structure 99.8 8.3E-20 2.8E-24 125.4 9.9 79 4-83 13-91 (101)
112 2jvo_A Nucleolar protein 3; nu 99.8 7.7E-20 2.6E-24 126.8 9.8 75 4-83 29-103 (108)
113 2cpd_A Apobec-1 stimulating pr 99.8 2.6E-19 9E-24 122.4 12.1 75 4-83 13-89 (99)
114 1u6f_A Tcubp1, RNA-binding pro 99.8 1.8E-19 6E-24 131.1 11.8 81 4-84 40-123 (139)
115 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.3E-19 4.4E-24 134.5 11.2 81 4-84 37-120 (156)
116 2diu_A KIAA0430 protein; struc 99.8 2.5E-19 8.4E-24 117.4 11.1 75 4-85 6-86 (96)
117 2dhg_A TRNA selenocysteine ass 99.8 1.1E-19 3.7E-24 125.5 10.1 81 4-84 7-91 (104)
118 2dh8_A DAZ-associated protein 99.8 5E-20 1.7E-24 127.4 8.3 80 4-84 14-96 (105)
119 2kt5_A RNA and export factor-b 99.8 1.9E-19 6.5E-24 128.3 11.5 81 4-84 33-115 (124)
120 2rs2_A Musashi-1, RNA-binding 99.8 1.9E-19 6.6E-24 125.1 11.2 79 4-83 23-104 (109)
121 3n9u_C Cleavage and polyadenyl 99.8 8E-20 2.7E-24 134.9 9.5 79 5-83 54-137 (156)
122 2kvi_A Nuclear polyadenylated 99.8 6.7E-20 2.3E-24 124.6 8.3 75 4-83 8-83 (96)
123 2e5j_A Methenyltetrahydrofolat 99.8 8.5E-20 2.9E-24 124.3 8.8 78 4-83 17-94 (97)
124 2la4_A Nuclear and cytoplasmic 99.8 6.9E-20 2.4E-24 125.8 8.2 76 4-82 25-100 (101)
125 3beg_B Splicing factor, argini 99.8 4.1E-20 1.4E-24 129.8 7.1 75 121-202 13-92 (115)
126 1whx_A Hypothetical protein ri 99.8 1E-19 3.4E-24 126.9 9.0 77 4-83 8-84 (111)
127 2cqh_A IGF-II mRNA-binding pro 99.8 1.2E-19 4E-24 122.7 9.1 77 3-83 5-83 (93)
128 1fjc_A Nucleolin RBD2, protein 99.8 6.1E-20 2.1E-24 124.9 7.6 78 4-83 14-91 (96)
129 1x4e_A RNA binding motif, sing 99.8 2E-20 7E-25 124.3 5.0 79 3-81 2-83 (85)
130 2cqp_A RNA-binding protein 12; 99.8 4E-20 1.4E-24 126.2 6.6 80 4-83 13-95 (98)
131 2mss_A Protein (musashi1); RNA 99.8 5.9E-20 2E-24 119.0 6.9 72 8-80 1-75 (75)
132 2m2b_A RNA-binding protein 10; 99.8 8E-20 2.7E-24 131.4 7.8 81 3-84 20-109 (131)
133 3egn_A RNA-binding protein 40; 99.8 7.1E-20 2.4E-24 133.8 7.6 82 4-85 43-132 (143)
134 1p1t_A Cleavage stimulation fa 99.8 9.8E-20 3.3E-24 125.7 7.8 80 4-83 6-88 (104)
135 2j76_E EIF-4B, EIF4B, eukaryot 99.8 7.8E-20 2.7E-24 125.2 7.2 78 4-83 17-98 (100)
136 2kn4_A Immunoglobulin G-bindin 99.8 4.3E-19 1.5E-23 132.0 11.8 81 4-84 68-151 (158)
137 2ek1_A RNA-binding protein 12; 99.8 4.3E-20 1.5E-24 125.3 5.8 78 4-81 13-93 (95)
138 2fc8_A NCL protein; structure 99.8 2E-19 6.8E-24 123.7 9.2 80 4-83 13-92 (102)
139 2cqg_A TDP-43, TAR DNA-binding 99.8 7E-19 2.4E-23 121.2 11.8 78 4-83 13-93 (103)
140 1wf1_A RNA-binding protein RAL 99.8 2.4E-19 8.1E-24 125.0 9.4 74 5-83 26-100 (110)
141 2lea_A Serine/arginine-rich sp 99.8 1.1E-19 3.7E-24 131.2 7.8 80 4-83 45-127 (135)
142 1wg5_A Heterogeneous nuclear r 99.8 5.2E-19 1.8E-23 121.9 10.8 79 4-83 13-94 (104)
143 2dgw_A Probable RNA-binding pr 99.8 3.6E-19 1.2E-23 119.7 9.6 78 4-83 8-87 (91)
144 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.9E-19 1.3E-23 129.5 10.4 77 4-80 61-140 (140)
145 2cq4_A RNA binding motif prote 99.8 2.3E-19 7.8E-24 126.0 8.8 78 5-83 24-104 (114)
146 1x4b_A Heterogeneous nuclear r 99.8 5.1E-19 1.7E-23 124.6 10.5 78 5-83 26-106 (116)
147 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.5E-19 8.5E-24 134.1 9.0 81 4-84 70-153 (165)
148 1uaw_A Mouse-musashi-1; RNP-ty 99.8 9.6E-20 3.3E-24 118.6 6.0 73 7-80 1-76 (77)
149 2jwn_A Embryonic polyadenylate 99.8 5.4E-19 1.9E-23 126.0 10.3 78 5-83 35-115 (124)
150 2e5g_A U6 snRNA-specific termi 99.8 1.1E-18 3.6E-23 118.1 11.2 77 4-83 6-82 (94)
151 2ki2_A SS-DNA binding protein 99.8 5.8E-20 2E-24 123.4 4.7 76 7-83 2-80 (90)
152 1wg1_A KIAA1579 protein, homol 99.8 2.3E-19 7.9E-24 119.8 7.6 77 3-83 2-78 (88)
153 1x5p_A Negative elongation fac 99.8 1.5E-18 5E-23 118.1 11.6 75 4-83 13-87 (97)
154 1fj7_A Nucleolin RBD1, protein 99.8 7.6E-20 2.6E-24 125.6 5.2 79 4-83 15-95 (101)
155 1x4c_A Splicing factor, argini 99.8 2.6E-18 8.7E-23 119.3 12.9 81 120-203 11-92 (108)
156 1x5o_A RNA binding motif, sing 99.8 4.8E-19 1.6E-23 124.3 9.3 80 4-83 23-112 (114)
157 2i2y_A Fusion protein consists 99.8 5.5E-19 1.9E-23 130.2 9.9 78 4-83 71-148 (150)
158 2cpy_A RNA-binding protein 12; 99.8 2.6E-19 8.9E-24 125.6 7.5 79 4-83 13-94 (114)
159 2db1_A Heterogeneous nuclear r 99.8 2.2E-19 7.6E-24 126.6 6.9 79 4-83 15-98 (118)
160 3beg_B Splicing factor, argini 99.8 3.8E-19 1.3E-23 124.9 7.9 76 4-83 14-94 (115)
161 2e44_A Insulin-like growth fac 99.8 1.1E-18 3.9E-23 118.5 9.6 79 4-83 13-92 (96)
162 1iqt_A AUF1, heterogeneous nuc 99.8 2.2E-19 7.7E-24 116.2 5.7 72 8-80 1-75 (75)
163 2f3j_A RNA and export factor b 99.8 8.9E-19 3.1E-23 132.1 9.7 80 4-83 86-167 (177)
164 1wez_A HnRNP H', FTP-3, hetero 99.8 4.9E-19 1.7E-23 121.4 7.4 78 4-83 13-92 (102)
165 2hgl_A HNRPF protein, heteroge 99.8 3.2E-19 1.1E-23 128.2 6.6 79 4-83 42-125 (136)
166 1sjr_A Polypyrimidine tract-bi 99.8 3.4E-18 1.2E-22 125.2 12.1 77 7-84 47-125 (164)
167 2dnn_A RNA-binding protein 12; 99.8 1.3E-18 4.5E-23 120.2 9.0 76 5-82 15-92 (109)
168 3zzy_A Polypyrimidine tract-bi 99.8 2.1E-18 7.1E-23 121.9 10.0 75 7-83 29-106 (130)
169 3q2s_C Cleavage and polyadenyl 99.8 7.7E-19 2.6E-23 138.0 8.1 78 5-82 67-149 (229)
170 1wel_A RNA-binding protein 12; 99.8 6.4E-19 2.2E-23 125.5 6.9 79 4-83 23-104 (124)
171 2hzc_A Splicing factor U2AF 65 99.8 2.1E-18 7.2E-23 115.0 8.8 73 3-79 3-86 (87)
172 2lmi_A GRSF-1, G-rich sequence 99.8 5.3E-19 1.8E-23 122.5 5.7 79 4-83 9-92 (107)
173 2e5i_A Heterogeneous nuclear r 99.8 5.7E-18 2E-22 119.2 10.6 77 5-84 22-103 (124)
174 1wf0_A TDP-43, TAR DNA-binding 99.8 1.7E-18 5.9E-23 115.6 7.5 77 3-83 2-78 (88)
175 2hgn_A Heterogeneous nuclear r 99.8 5.8E-19 2E-23 127.2 5.3 78 4-83 44-123 (139)
176 3d2w_A TAR DNA-binding protein 99.8 3.4E-18 1.2E-22 114.1 8.6 74 4-83 9-84 (89)
177 2dha_A FLJ20171 protein; RRM d 99.8 1.1E-18 3.9E-23 123.1 6.2 78 4-82 21-104 (123)
178 2hgm_A HNRPF protein, heteroge 99.7 2.2E-18 7.5E-23 121.9 7.5 77 4-82 40-120 (126)
179 2pe8_A Splicing factor 45; RRM 99.7 9.3E-18 3.2E-22 115.2 10.1 80 3-82 5-93 (105)
180 2lcw_A RNA-binding protein FUS 99.6 9.5E-20 3.3E-24 128.3 0.0 80 4-83 5-95 (116)
181 2bz2_A Negative elongation fac 99.7 8.7E-18 3E-22 118.7 9.0 75 4-83 37-111 (121)
182 2xs2_A Deleted in azoospermia- 99.7 2.4E-18 8.4E-23 118.2 5.8 78 4-83 7-86 (102)
183 3md3_A Nuclear and cytoplasmic 99.7 2.3E-17 8E-22 123.4 10.3 78 4-81 85-165 (166)
184 4f02_A Polyadenylate-binding p 99.7 1.7E-17 5.7E-22 129.4 9.7 79 5-83 102-181 (213)
185 2lea_A Serine/arginine-rich sp 99.7 1.5E-17 5.2E-22 119.9 8.3 121 46-206 5-129 (135)
186 2dnl_A Cytoplasmic polyadenyla 99.7 2.1E-17 7E-22 115.8 8.3 75 4-81 6-86 (114)
187 2qfj_A FBP-interacting repress 99.7 4.3E-17 1.5E-21 127.3 10.7 80 4-83 123-205 (216)
188 1rk8_A CG8781-PA, CG8781-PA pr 99.7 4E-17 1.4E-21 122.0 9.9 137 50-205 11-153 (165)
189 4fxv_A ELAV-like protein 1; RN 99.7 6.8E-17 2.3E-21 110.0 9.9 76 123-202 18-97 (99)
190 2fy1_A RNA-binding motif prote 99.7 2.1E-16 7.1E-21 110.9 12.7 80 122-205 5-87 (116)
191 1x4a_A Splicing factor, argini 99.7 3.3E-16 1.1E-20 108.8 13.5 84 118-205 16-100 (109)
192 2j8a_A Histone-lysine N-methyl 99.7 1.7E-17 5.9E-22 115.0 6.6 78 6-83 2-96 (136)
193 2jvr_A Nucleolar protein 3; RN 99.7 4E-17 1.4E-21 113.0 8.5 84 118-205 22-106 (111)
194 2dit_A HIV TAT specific factor 99.7 7.5E-17 2.5E-21 112.5 9.8 79 4-83 13-102 (112)
195 3u1l_A PRE-mRNA-splicing facto 99.7 3.3E-17 1.1E-21 128.1 8.8 77 4-83 132-229 (240)
196 1fje_B Nucleolin RBD12, protei 99.7 3.8E-17 1.3E-21 123.4 8.7 78 4-83 97-174 (175)
197 2cpz_A CUG triplet repeat RNA- 99.7 5.2E-16 1.8E-20 108.9 13.8 84 118-205 19-106 (115)
198 2yh0_A Splicing factor U2AF 65 99.7 6.7E-17 2.3E-21 124.5 9.6 80 4-83 112-194 (198)
199 2g4b_A Splicing factor U2AF 65 99.7 4.3E-17 1.5E-21 122.7 8.3 76 5-80 93-171 (172)
200 2cjk_A Nuclear polyadenylated 99.7 3.6E-17 1.2E-21 122.6 7.7 78 5-83 86-166 (167)
201 3ex7_B RNA-binding protein 8A; 99.7 1.2E-16 4.2E-21 114.0 9.4 82 120-205 18-103 (126)
202 1l3k_A Heterogeneous nuclear r 99.7 1.2E-16 4E-21 122.9 9.7 80 5-85 103-185 (196)
203 2voo_A Lupus LA protein; RNA-b 99.7 1.4E-16 4.6E-21 121.9 9.9 77 6-83 109-187 (193)
204 1b7f_A Protein (SXL-lethal pro 99.7 1.7E-16 5.7E-21 119.0 9.6 77 4-80 87-168 (168)
205 3nmr_A Cugbp ELAV-like family 99.7 1.4E-16 4.8E-21 120.2 9.2 77 5-81 94-175 (175)
206 2wbr_A GW182, gawky, LD47780P; 99.7 3.6E-16 1.2E-20 101.5 9.6 73 124-202 7-79 (89)
207 2e5j_A Methenyltetrahydrofolat 99.7 9.2E-16 3.1E-20 104.2 12.0 82 119-205 14-95 (97)
208 3v4m_A Splicing factor U2AF 65 99.7 2.4E-16 8.3E-21 108.2 8.9 80 3-82 2-96 (105)
209 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.8E-15 6.2E-20 103.9 13.2 84 119-206 10-95 (103)
210 1sjq_A Polypyrimidine tract-bi 99.7 6.9E-16 2.4E-20 105.0 10.7 77 123-205 15-93 (105)
211 2do4_A Squamous cell carcinoma 99.7 1.6E-15 5.5E-20 103.6 12.4 82 120-205 13-97 (100)
212 2dgo_A Cytotoxic granule-assoc 99.7 3.9E-15 1.3E-19 104.4 14.3 84 119-206 10-97 (115)
213 1fxl_A Paraneoplastic encephal 99.7 3.5E-16 1.2E-20 117.0 9.3 76 5-80 87-167 (167)
214 2d9p_A Polyadenylate-binding p 99.7 1E-15 3.5E-20 105.1 10.9 84 119-206 10-95 (103)
215 2dnh_A Bruno-like 5, RNA bindi 99.7 2.2E-15 7.4E-20 103.9 12.6 82 121-206 12-99 (105)
216 2do0_A HnRNP M, heterogeneous 99.7 3.3E-15 1.1E-19 104.6 13.7 82 120-205 11-95 (114)
217 4f25_A Polyadenylate-binding p 99.7 5.6E-16 1.9E-20 108.6 9.5 77 124-204 5-83 (115)
218 3pgw_A U1-A; protein-RNA compl 99.7 5.2E-16 1.8E-20 126.2 10.7 76 4-81 205-281 (282)
219 2cq3_A RNA-binding protein 9; 99.7 2.8E-15 9.4E-20 103.0 12.6 83 119-205 10-94 (103)
220 3s8s_A Histone-lysine N-methyl 99.6 9.8E-16 3.3E-20 106.2 10.1 78 123-204 5-86 (110)
221 2cq0_A Eukaryotic translation 99.6 1.5E-15 5.1E-20 104.4 11.0 83 120-206 11-97 (103)
222 2ywk_A Putative RNA-binding pr 99.6 1.3E-15 4.5E-20 103.0 10.1 80 119-202 11-93 (95)
223 1qm9_A Polypyrimidine tract-bi 99.6 4.1E-16 1.4E-20 120.2 8.5 78 4-83 118-197 (198)
224 2dnm_A SRP46 splicing factor; 99.6 2.1E-15 7.2E-20 103.6 11.2 83 119-205 8-94 (103)
225 2dgx_A KIAA0430 protein; RRM d 99.6 1.9E-15 6.5E-20 102.4 10.7 81 122-206 7-92 (96)
226 2adc_A Polypyrimidine tract-bi 99.6 9.8E-16 3.4E-20 120.7 10.7 78 4-83 149-228 (229)
227 2e5h_A Zinc finger CCHC-type a 99.6 1.3E-15 4.6E-20 102.8 9.9 79 120-202 12-94 (94)
228 3r27_A HnRNP L, heterogeneous 99.6 1E-15 3.5E-20 103.0 9.0 76 122-203 19-96 (100)
229 2cqc_A Arginine/serine-rich sp 99.6 3.1E-15 1.1E-19 101.1 11.4 81 119-203 10-94 (95)
230 1whw_A Hypothetical protein ri 99.6 3.3E-15 1.1E-19 101.8 11.4 81 122-206 6-90 (99)
231 2hvz_A Splicing factor, argini 99.6 2.1E-15 7.1E-20 103.2 10.4 76 125-205 1-76 (101)
232 2dnz_A Probable RNA-binding pr 99.6 4E-15 1.4E-19 100.6 11.6 80 123-206 4-87 (95)
233 1x5s_A Cold-inducible RNA-bind 99.6 3.3E-15 1.1E-19 102.4 11.3 80 122-205 10-93 (102)
234 2dnq_A RNA-binding protein 4B; 99.6 4.7E-15 1.6E-19 99.2 11.7 77 122-206 6-82 (90)
235 3tyt_A Heterogeneous nuclear r 99.6 4E-16 1.4E-20 120.6 7.2 77 4-80 121-204 (205)
236 1x5u_A Splicing factor 3B subu 99.6 5.1E-15 1.7E-19 102.0 11.9 83 119-205 10-96 (105)
237 2ad9_A Polypyrimidine tract-bi 99.6 1.6E-15 5.5E-20 105.8 9.3 80 120-205 27-108 (119)
238 1wex_A Hypothetical protein (r 99.6 4.3E-15 1.5E-19 101.7 11.3 78 122-205 13-92 (104)
239 1x4h_A RNA-binding protein 28; 99.6 6.2E-15 2.1E-19 102.7 12.4 83 120-206 11-103 (111)
240 1x4d_A Matrin 3; structural ge 99.6 9.8E-16 3.3E-20 104.2 7.9 76 122-203 13-91 (102)
241 3bs9_A Nucleolysin TIA-1 isofo 99.6 2.1E-15 7.1E-20 100.3 9.4 78 122-203 4-85 (87)
242 1x4f_A Matrin 3; structural ge 99.6 1.3E-15 4.4E-20 105.1 8.6 79 119-203 20-101 (112)
243 2cph_A RNA binding motif prote 99.6 6.3E-15 2.1E-19 101.9 12.1 84 119-206 10-99 (107)
244 2dgp_A Bruno-like 4, RNA bindi 99.6 5.4E-15 1.8E-19 102.1 11.7 82 120-205 9-97 (106)
245 4a8x_A RNA-binding protein wit 99.6 1.8E-15 6.1E-20 100.8 8.9 77 124-204 4-85 (88)
246 2d9o_A DNAJ (HSP40) homolog, s 99.6 7.8E-15 2.7E-19 99.3 12.1 76 5-84 9-91 (100)
247 1wi8_A EIF-4B, eukaryotic tran 99.6 3.1E-15 1.1E-19 102.9 10.3 83 118-206 9-96 (104)
248 2dnp_A RNA-binding protein 14; 99.6 4.2E-15 1.4E-19 99.5 10.6 77 122-206 7-83 (90)
249 2kxn_B Transformer-2 protein h 99.6 2.9E-15 1E-19 107.0 10.5 82 120-205 42-127 (129)
250 2dgv_A HnRNP M, heterogeneous 99.6 6.1E-15 2.1E-19 99.1 11.5 81 121-205 5-87 (92)
251 2dhg_A TRNA selenocysteine ass 99.6 9.9E-15 3.4E-19 100.4 12.6 81 121-205 6-91 (104)
252 2cq1_A PTB-like protein L; RRM 99.6 3.7E-15 1.3E-19 101.4 10.2 79 120-204 11-91 (101)
253 3mdf_A Peptidyl-prolyl CIS-tra 99.6 2.6E-15 8.8E-20 99.4 9.2 77 122-202 5-85 (85)
254 2dgs_A DAZ-associated protein 99.6 7.2E-15 2.5E-19 100.1 11.6 81 121-206 7-91 (99)
255 2dgu_A Heterogeneous nuclear r 99.6 1E-14 3.4E-19 100.2 12.4 76 123-206 10-85 (103)
256 1wf1_A RNA-binding protein RAL 99.6 1.4E-14 4.8E-19 100.7 13.2 76 121-204 24-100 (110)
257 1x5t_A Splicing factor 3B subu 99.6 2.9E-15 1E-19 101.5 9.4 80 123-206 4-88 (96)
258 1why_A Hypothetical protein ri 99.6 1E-14 3.6E-19 98.9 12.0 81 122-206 15-95 (97)
259 2la6_A RNA-binding protein FUS 99.6 6.9E-15 2.3E-19 100.2 11.2 81 118-202 7-99 (99)
260 2e44_A Insulin-like growth fac 99.6 5.6E-15 1.9E-19 100.1 10.6 81 120-204 11-92 (96)
261 2cpj_A Non-POU domain-containi 99.6 6.8E-15 2.3E-19 100.2 11.1 79 121-205 12-90 (99)
262 2cpd_A Apobec-1 stimulating pr 99.6 1.3E-14 4.5E-19 98.8 12.5 78 120-205 11-90 (99)
263 2dgt_A RNA-binding protein 30; 99.6 7.8E-15 2.7E-19 98.5 11.2 77 121-205 7-83 (92)
264 2cpf_A RNA binding motif prote 99.6 4.4E-15 1.5E-19 101.0 10.0 79 123-205 4-89 (98)
265 2cqb_A Peptidyl-prolyl CIS-tra 99.6 3.7E-15 1.3E-19 102.2 9.5 81 122-206 10-94 (102)
266 1x4g_A Nucleolysin TIAR; struc 99.6 9.5E-15 3.2E-19 101.3 11.6 79 122-206 23-101 (109)
267 2ytc_A PRE-mRNA-splicing facto 99.6 5.3E-15 1.8E-19 97.8 9.8 77 120-202 8-85 (85)
268 2dng_A Eukaryotic translation 99.6 1E-14 3.4E-19 100.2 11.5 82 118-205 9-94 (103)
269 2lxi_A RNA-binding protein 10; 99.6 1.1E-15 3.9E-20 102.3 6.5 77 125-205 2-84 (91)
270 2jrs_A RNA-binding protein 39; 99.6 2.2E-14 7.6E-19 99.2 13.2 83 118-204 20-106 (108)
271 2dh8_A DAZ-associated protein 99.6 1.4E-14 4.6E-19 99.9 12.1 81 120-205 12-96 (105)
272 3md1_A Nuclear and cytoplasmic 99.6 6.7E-15 2.3E-19 96.9 10.1 76 125-204 2-81 (83)
273 1u6f_A Tcubp1, RNA-binding pro 99.6 2.3E-14 7.9E-19 103.9 13.8 84 119-206 37-124 (139)
274 2jvo_A Nucleolar protein 3; nu 99.6 4.8E-15 1.6E-19 102.5 9.5 79 120-206 27-105 (108)
275 2x1f_A MRNA 3'-END-processing 99.6 4.5E-15 1.5E-19 100.5 9.3 77 124-204 2-82 (96)
276 2div_A TRNA selenocysteine ass 99.6 1.1E-14 3.6E-19 99.3 11.1 79 122-204 7-94 (99)
277 1p27_B RNA-binding protein 8A; 99.6 8.1E-15 2.8E-19 101.2 10.6 79 121-203 20-102 (106)
278 3ue2_A Poly(U)-binding-splicin 99.6 2E-15 6.7E-20 105.6 7.5 79 4-82 18-108 (118)
279 3tht_A Alkylated DNA repair pr 99.6 2.9E-15 9.8E-20 123.3 9.4 77 2-81 14-97 (345)
280 3ulh_A THO complex subunit 4; 99.6 6.6E-15 2.2E-19 101.8 9.7 79 120-202 25-106 (107)
281 2cpi_A CCR4-NOT transcription 99.6 3.2E-15 1.1E-19 104.1 8.1 81 121-205 12-102 (111)
282 2lkz_A RNA-binding protein 5; 99.6 2.2E-15 7.6E-20 101.4 7.0 78 122-203 7-94 (95)
283 2cpx_A Hypothetical protein FL 99.6 2.6E-14 8.8E-19 100.2 12.7 82 121-206 22-107 (115)
284 2cpe_A RNA-binding protein EWS 99.6 1.1E-14 3.7E-19 101.8 10.7 83 120-206 11-105 (113)
285 1sjr_A Polypyrimidine tract-bi 99.6 1.1E-14 3.7E-19 106.7 11.1 81 122-204 44-124 (164)
286 2khc_A Testis-specific RNP-typ 99.6 1.6E-14 5.4E-19 101.7 11.5 80 119-202 35-118 (118)
287 2cqd_A RNA-binding region cont 99.6 1.8E-14 6.1E-19 101.1 11.6 80 119-203 12-95 (116)
288 1jmt_A Splicing factor U2AF 35 99.6 5.5E-16 1.9E-20 106.3 3.6 69 12-80 21-103 (104)
289 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.2E-14 4.1E-19 107.6 11.1 79 122-204 37-119 (156)
290 2err_A Ataxin-2-binding protei 99.6 5.9E-15 2E-19 102.3 8.9 81 119-203 24-106 (109)
291 2kt5_A RNA and export factor-b 99.6 7.9E-14 2.7E-18 99.0 14.6 80 120-203 31-113 (124)
292 2cqp_A RNA-binding protein 12; 99.6 5.7E-15 1.9E-19 100.5 8.2 80 121-204 12-95 (98)
293 3p5t_L Cleavage and polyadenyl 99.6 4.3E-15 1.5E-19 99.3 7.3 77 125-205 2-84 (90)
294 1oo0_B CG8781-PA, drosophila Y 99.6 9.2E-15 3.1E-19 101.6 9.1 81 120-204 22-106 (110)
295 1x5o_A RNA binding motif, sing 99.6 4.3E-14 1.5E-18 98.9 12.6 83 120-202 21-110 (114)
296 3lqv_A PRE-mRNA branch site pr 99.6 1.6E-14 5.6E-19 101.2 10.2 79 121-203 5-84 (115)
297 2kvi_A Nuclear polyadenylated 99.6 9.2E-15 3.2E-19 99.0 8.6 77 121-205 7-84 (96)
298 2a3j_A U1 small nuclear ribonu 99.6 2.1E-14 7.2E-19 101.8 10.6 79 122-204 27-110 (127)
299 2hgl_A HNRPF protein, heteroge 99.6 5.4E-15 1.9E-19 106.1 7.4 80 118-202 38-123 (136)
300 2xnq_A Nuclear polyadenylated 99.6 2E-14 6.9E-19 97.4 9.8 77 119-203 17-94 (97)
301 2la4_A Nuclear and cytoplasmic 99.6 1.9E-14 6.5E-19 98.4 9.8 76 122-203 25-100 (101)
302 2fc9_A NCL protein; structure 99.6 9.4E-15 3.2E-19 99.9 8.1 79 120-205 11-92 (101)
303 3s6e_A RNA-binding protein 39; 99.6 1.4E-14 4.7E-19 100.5 8.9 77 4-81 5-91 (114)
304 1s79_A Lupus LA protein; RRM, 99.6 1.8E-14 6.1E-19 98.6 9.2 75 122-201 9-86 (103)
305 1x4e_A RNA binding motif, sing 99.6 4.6E-15 1.6E-19 98.1 6.0 75 123-201 4-82 (85)
306 2db1_A Heterogeneous nuclear r 99.6 9.2E-15 3.2E-19 102.8 7.8 80 118-202 11-96 (118)
307 2hgn_A Heterogeneous nuclear r 99.6 2.5E-15 8.7E-20 108.1 4.9 80 120-205 42-124 (139)
308 2e5i_A Heterogeneous nuclear r 99.6 1.2E-13 4.2E-18 97.0 13.4 77 124-204 25-102 (124)
309 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 5.4E-14 1.8E-18 102.1 11.9 78 120-201 59-140 (140)
310 3ns6_A Eukaryotic translation 99.6 8.5E-15 2.9E-19 99.9 7.0 76 123-202 5-91 (100)
311 1whx_A Hypothetical protein ri 99.6 8.9E-15 3.1E-19 101.7 7.2 75 123-203 9-83 (111)
312 2cqh_A IGF-II mRNA-binding pro 99.5 2.9E-14 9.8E-19 95.9 9.4 77 123-206 7-85 (93)
313 3sde_A Paraspeckle component 1 99.5 1.4E-14 4.9E-19 116.3 9.3 80 4-83 94-179 (261)
314 1x5p_A Negative elongation fac 99.5 9.7E-14 3.3E-18 94.1 11.9 78 121-206 12-89 (97)
315 2cq2_A Hypothetical protein LO 99.5 2E-14 6.8E-19 99.2 8.5 82 122-205 23-107 (114)
316 2dgw_A Probable RNA-binding pr 99.5 4.4E-14 1.5E-18 94.6 10.0 79 121-205 7-88 (91)
317 1wel_A RNA-binding protein 12; 99.5 1.3E-14 4.4E-19 103.1 7.7 79 119-202 20-102 (124)
318 1wg5_A Heterogeneous nuclear r 99.5 2.7E-14 9.1E-19 98.2 9.0 80 119-203 10-93 (104)
319 2nlw_A Eukaryotic translation 99.5 3.2E-14 1.1E-18 97.9 9.3 78 122-203 13-99 (105)
320 2cqg_A TDP-43, TAR DNA-binding 99.5 1.6E-13 5.6E-18 94.0 12.9 81 119-205 10-94 (103)
321 1p1t_A Cleavage stimulation fa 99.5 2E-14 6.8E-19 98.9 8.2 79 123-205 7-89 (104)
322 1wez_A HnRNP H', FTP-3, hetero 99.5 4E-14 1.4E-18 96.8 9.6 77 121-203 12-91 (102)
323 2cq4_A RNA binding motif prote 99.5 2.8E-14 9.7E-19 99.8 9.1 76 122-202 23-102 (114)
324 2dnn_A RNA-binding protein 12; 99.5 2E-14 6.8E-19 99.2 8.1 76 121-202 13-91 (109)
325 2ek1_A RNA-binding protein 12; 99.5 9.2E-15 3.1E-19 98.8 6.2 76 123-202 14-93 (95)
326 2m2b_A RNA-binding protein 10; 99.5 5E-14 1.7E-18 101.0 10.5 79 121-204 20-108 (131)
327 3s7r_A Heterogeneous nuclear r 99.5 5.1E-14 1.7E-18 93.5 9.8 76 121-201 8-87 (87)
328 3ucg_A Polyadenylate-binding p 99.5 5.2E-14 1.8E-18 93.8 9.6 75 124-203 6-84 (89)
329 3n9u_C Cleavage and polyadenyl 99.5 4.3E-14 1.5E-18 104.1 10.1 76 123-202 54-135 (156)
330 2krb_A Eukaryotic translation 99.5 1.7E-14 5.9E-19 94.4 6.6 70 125-198 2-80 (81)
331 1x4b_A Heterogeneous nuclear r 99.5 7E-14 2.4E-18 98.1 10.2 80 122-206 25-108 (116)
332 2diu_A KIAA0430 protein; struc 99.5 7.3E-14 2.5E-18 91.5 9.4 71 125-205 10-85 (96)
333 2jwn_A Embryonic polyadenylate 99.5 5.8E-14 2E-18 99.7 9.6 76 123-203 35-114 (124)
334 3zzy_A Polypyrimidine tract-bi 99.5 5.1E-14 1.8E-18 99.4 8.9 80 122-204 26-106 (130)
335 2j76_E EIF-4B, EIF4B, eukaryot 99.5 1.6E-14 5.4E-19 98.6 6.1 80 119-204 14-98 (100)
336 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.7E-14 9.1E-19 92.5 6.9 72 125-201 1-76 (77)
337 2e5g_A U6 snRNA-specific termi 99.5 1.3E-13 4.3E-18 92.9 10.5 74 123-203 7-81 (94)
338 2mss_A Protein (musashi1); RNA 99.5 2.7E-14 9.2E-19 92.0 6.8 71 126-201 1-75 (75)
339 1nu4_A U1A RNA binding domain; 99.5 2.4E-14 8.3E-19 97.1 6.9 81 121-205 5-90 (97)
340 2cpy_A RNA-binding protein 12; 99.5 3.1E-14 1.1E-18 99.5 7.0 78 121-203 12-93 (114)
341 2dis_A Unnamed protein product 99.5 2.3E-13 8E-18 94.3 11.1 79 123-205 7-93 (109)
342 1fjc_A Nucleolin RBD2, protein 99.5 3.1E-14 1E-18 96.4 6.4 80 120-204 12-91 (96)
343 2fc8_A NCL protein; structure 99.5 2E-13 7E-18 93.4 10.5 81 119-206 10-94 (102)
344 2rs2_A Musashi-1, RNA-binding 99.5 9.6E-14 3.3E-18 96.1 8.8 80 121-205 22-105 (109)
345 2lmi_A GRSF-1, G-rich sequence 99.5 3.5E-14 1.2E-18 98.1 6.5 78 120-202 7-90 (107)
346 1fj7_A Nucleolin RBD1, protein 99.5 1.6E-13 5.4E-18 93.8 9.7 78 122-205 15-96 (101)
347 2hzc_A Splicing factor U2AF 65 99.5 1.3E-13 4.5E-18 91.5 8.7 72 122-200 4-86 (87)
348 2f3j_A RNA and export factor b 99.5 1.6E-13 5.5E-18 103.3 9.8 79 120-202 84-165 (177)
349 2dha_A FLJ20171 protein; RRM d 99.5 1.7E-14 5.8E-19 101.7 4.0 77 121-202 20-103 (123)
350 2ki2_A SS-DNA binding protein 99.5 4.2E-14 1.4E-18 94.5 5.8 75 125-204 2-80 (90)
351 3q2s_C Cleavage and polyadenyl 99.5 1.4E-13 4.8E-18 108.0 9.4 76 123-202 67-148 (229)
352 2hgm_A HNRPF protein, heteroge 99.5 1.1E-13 3.6E-18 97.8 7.4 77 120-202 38-119 (126)
353 1wg1_A KIAA1579 protein, homol 99.5 7E-14 2.4E-18 93.0 6.2 75 123-204 4-78 (88)
354 3egn_A RNA-binding protein 40; 99.5 1.8E-13 6.2E-18 99.6 8.8 81 121-205 42-131 (143)
355 2bz2_A Negative elongation fac 99.5 3E-13 1E-17 95.3 9.1 77 121-205 36-112 (121)
356 1iqt_A AUF1, heterogeneous nuc 99.5 1.1E-13 3.9E-18 89.0 6.4 71 126-201 1-75 (75)
357 2xs2_A Deleted in azoospermia- 99.4 4.2E-13 1.4E-17 91.8 7.0 75 122-202 7-84 (102)
358 2lcw_A RNA-binding protein FUS 99.1 1.8E-14 6.3E-19 101.1 0.0 81 122-206 5-97 (116)
359 3d2w_A TAR DNA-binding protein 99.4 3.7E-13 1.3E-17 89.5 6.3 77 120-203 7-83 (89)
360 1owx_A Lupus LA protein, SS-B, 99.4 1.4E-12 4.9E-17 90.4 9.4 75 4-81 16-94 (121)
361 2voo_A Lupus LA protein; RNA-b 99.4 3.2E-12 1.1E-16 97.6 11.4 75 123-202 108-185 (193)
362 1wf0_A TDP-43, TAR DNA-binding 99.4 4.4E-13 1.5E-17 89.1 5.6 76 123-205 4-79 (88)
363 2dit_A HIV TAT specific factor 99.4 4.1E-12 1.4E-16 88.3 10.2 80 122-205 13-103 (112)
364 2dnr_A Synaptojanin-1; RRM dom 99.4 2.5E-12 8.7E-17 83.5 8.2 75 3-83 4-86 (91)
365 3u1l_A PRE-mRNA-splicing facto 99.4 1.3E-12 4.5E-17 102.0 7.8 82 122-205 132-230 (240)
366 2j8a_A Histone-lysine N-methyl 99.4 2.9E-12 9.9E-17 88.9 8.4 75 125-203 3-95 (136)
367 2pe8_A Splicing factor 45; RRM 99.4 3.9E-12 1.3E-16 87.0 8.9 77 122-202 6-92 (105)
368 2dnl_A Cytoplasmic polyadenyla 99.3 5.2E-12 1.8E-16 88.1 9.1 59 123-182 7-72 (114)
369 3v4m_A Splicing factor U2AF 65 99.2 1.6E-11 5.4E-16 84.1 6.8 76 123-202 4-95 (105)
370 3s6e_A RNA-binding protein 39; 99.2 4.7E-11 1.6E-15 82.7 8.1 77 122-202 5-91 (114)
371 3ue2_A Poly(U)-binding-splicin 99.2 3.2E-11 1.1E-15 84.1 7.0 76 123-202 19-107 (118)
372 1ufw_A Synaptojanin 2; RNP dom 99.2 2.1E-11 7.1E-16 79.5 5.2 72 4-81 13-93 (95)
373 1jmt_A Splicing factor U2AF 35 99.2 1.4E-11 4.8E-16 84.2 3.3 69 129-201 20-103 (104)
374 3tht_A Alkylated DNA repair pr 99.1 6.8E-11 2.3E-15 97.3 7.1 80 120-202 14-97 (345)
375 2d9o_A DNAJ (HSP40) homolog, s 99.1 3.8E-10 1.3E-14 76.2 9.0 65 134-205 27-91 (100)
376 3dxb_A Thioredoxin N-terminall 99.0 6E-10 2.1E-14 87.0 7.7 76 6-81 124-211 (222)
377 1owx_A Lupus LA protein, SS-B, 99.0 2E-09 6.8E-14 74.6 7.6 77 119-201 13-93 (121)
378 2l9w_A U4/U6 snRNA-associated- 98.9 4.8E-09 1.7E-13 69.7 8.3 73 4-79 19-96 (117)
379 2dnr_A Synaptojanin-1; RRM dom 98.8 6.5E-09 2.2E-13 67.5 6.4 71 123-202 6-84 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.7 3.5E-08 1.2E-12 64.3 6.7 70 123-201 14-92 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.7 4.3E-07 1.5E-11 59.9 11.6 74 4-83 6-84 (104)
382 1wey_A Calcipressin 1; structu 98.5 9.3E-07 3.2E-11 58.7 8.9 77 4-83 3-84 (104)
383 3dxb_A Thioredoxin N-terminall 98.5 3.2E-07 1.1E-11 71.5 7.1 63 136-202 141-211 (222)
384 2l9w_A U4/U6 snRNA-associated- 98.4 2.9E-06 1E-10 56.5 9.0 71 123-199 20-95 (117)
385 1wwh_A Nucleoporin 35, nucleop 98.1 1.8E-05 6.2E-10 54.0 8.4 72 5-81 23-95 (119)
386 1whv_A Poly(A)-specific ribonu 98.1 1E-05 3.5E-10 52.7 6.3 54 6-65 16-69 (100)
387 1uw4_A UPF3X; nonsense mediate 98.0 1.7E-05 5.7E-10 51.8 6.9 65 7-71 2-71 (91)
388 3ctr_A Poly(A)-specific ribonu 98.0 1.3E-05 4.4E-10 52.4 5.3 54 7-66 7-60 (101)
389 1wey_A Calcipressin 1; structu 97.7 0.00018 6.2E-09 47.7 7.1 73 124-202 5-82 (104)
390 2l08_A Regulator of nonsense t 97.5 0.00022 7.4E-09 46.8 6.0 77 5-81 8-94 (97)
391 3p3d_A Nucleoporin 53; structu 97.5 0.0003 1E-08 48.6 6.2 77 4-82 5-98 (132)
392 1uw4_A UPF3X; nonsense mediate 97.4 0.00096 3.3E-08 43.4 7.9 65 125-189 2-72 (91)
393 1whv_A Poly(A)-specific ribonu 97.4 0.0013 4.3E-08 42.9 7.9 54 125-183 17-70 (100)
394 3ctr_A Poly(A)-specific ribonu 97.1 0.001 3.4E-08 43.5 5.6 54 125-183 7-60 (101)
395 2dhx_A Poly (ADP-ribose) polym 97.1 0.0025 8.5E-08 42.1 7.1 69 124-201 8-81 (104)
396 3pq1_A Poly(A) RNA polymerase; 97.1 0.00032 1.1E-08 59.8 3.4 55 6-63 53-107 (464)
397 1wwh_A Nucleoporin 35, nucleop 96.9 0.005 1.7E-07 42.0 7.3 64 121-188 21-84 (119)
398 2l08_A Regulator of nonsense t 96.2 0.0046 1.6E-07 40.5 3.6 66 124-189 9-80 (97)
399 3pq1_A Poly(A) RNA polymerase; 95.3 0.012 3.9E-07 50.3 3.7 56 124-181 53-108 (464)
400 3d45_A Poly(A)-specific ribonu 93.8 0.15 5E-06 44.4 6.9 55 6-66 440-494 (507)
401 3p3d_A Nucleoporin 53; structu 93.3 0.11 3.7E-06 36.0 4.2 72 124-201 7-96 (132)
402 2g0c_A ATP-dependent RNA helic 89.9 1.5 5E-05 27.0 6.6 68 8-81 2-75 (76)
403 4eyt_A Telomerase associated p 87.9 3.7 0.00012 26.0 8.5 69 4-79 10-78 (129)
404 3d45_A Poly(A)-specific ribonu 85.2 2.3 8E-05 36.9 7.2 55 125-184 441-495 (507)
405 4eyt_A Telomerase associated p 75.2 13 0.00044 23.5 7.4 57 124-184 12-68 (129)
406 3j21_T 50S ribosomal protein L 69.0 18 0.00063 22.8 5.9 54 10-63 26-81 (86)
407 4e8u_A Putative uncharacterize 65.1 9.4 0.00032 27.7 4.4 56 8-63 14-81 (172)
408 1vq8_S 50S ribosomal protein L 60.3 23 0.00079 22.3 5.1 54 10-63 25-80 (85)
409 3ts2_A Protein LIN-28 homolog 55.3 2.2 7.6E-05 30.2 -0.2 28 21-53 2-29 (148)
410 2e5p_A Protein PHF1, PHD finge 52.8 7.9 0.00027 22.9 1.9 20 31-55 28-47 (68)
411 2eqj_A Metal-response element- 46.8 11 0.00039 22.3 1.9 12 44-55 40-51 (66)
412 2m0o_A PHD finger protein 1; t 46.6 11 0.00038 23.0 1.9 20 31-55 45-64 (79)
413 3fry_A Probable copper-exporti 45.5 44 0.0015 19.5 5.8 56 6-65 6-61 (73)
414 4a17_R RPL23A, 60S ribosomal p 45.2 48 0.0017 23.3 5.2 51 13-63 93-145 (150)
415 3u5e_X 60S ribosomal protein L 45.0 51 0.0018 23.0 5.3 54 10-63 82-137 (142)
416 2zkr_s 60S ribosomal protein L 44.3 51 0.0017 23.4 5.3 54 10-63 96-151 (156)
417 3iz5_X 60S ribosomal protein L 41.5 42 0.0014 23.7 4.5 52 12-63 94-147 (152)
418 3h7h_B Transcription elongatio 38.2 38 0.0013 22.3 3.7 35 33-69 41-75 (106)
419 1vd2_A Protein kinase C, IOTA 37.4 78 0.0027 20.0 5.0 55 9-65 17-74 (89)
420 3swz_A Steroid 17-alpha-hydrox 37.1 45 0.0015 28.2 5.1 59 9-74 17-79 (494)
421 3lpe_A Putative transcription 36.6 80 0.0027 19.9 6.6 33 33-67 40-72 (92)
422 4hcz_A PHD finger protein 1; p 36.1 22 0.00075 20.5 1.9 20 31-55 22-41 (58)
423 3uzu_A Ribosomal RNA small sub 35.7 20 0.00069 28.2 2.4 32 7-38 115-146 (279)
424 3fut_A Dimethyladenosine trans 34.7 35 0.0012 26.7 3.7 29 7-36 111-139 (271)
425 4a4j_A Pacszia, cation-transpo 32.0 71 0.0024 18.0 5.0 54 7-63 4-60 (69)
426 4e8u_A Putative uncharacterize 30.5 1E+02 0.0035 22.2 5.2 50 125-174 13-74 (172)
427 2jrh_A Mitogen-activated prote 29.7 97 0.0033 19.5 4.2 64 13-82 19-83 (94)
428 1ytr_A Bacteriocin plantaricin 29.1 32 0.0011 15.4 1.4 13 19-31 13-25 (26)
429 3j21_T 50S ribosomal protein L 28.5 1.1E+02 0.0038 19.2 7.3 57 126-182 24-83 (86)
430 4bby_A Alkyldihydroxyacetoneph 28.2 52 0.0018 29.5 4.1 53 13-65 350-408 (658)
431 2cs4_A Protein C12ORF2; GTP bi 28.2 39 0.0013 21.7 2.4 22 11-32 21-43 (95)
432 1qyr_A KSGA, high level kasuga 28.0 51 0.0017 25.4 3.5 30 7-36 91-120 (252)
433 3tqs_A Ribosomal RNA small sub 27.5 25 0.00084 27.3 1.6 31 8-38 98-128 (255)
434 2npt_B Mitogen-activated prote 27.0 1.1E+02 0.0039 19.5 4.3 49 13-66 35-84 (100)
435 2c60_A Human mitogen-activated 26.7 98 0.0033 20.1 3.9 49 13-66 46-95 (111)
436 2exu_A Transcription initiatio 26.0 63 0.0021 24.0 3.5 29 42-70 146-174 (200)
437 2od0_A Hypothetical protein VP 25.8 66 0.0023 20.8 3.3 22 18-39 4-25 (105)
438 1i4w_A Mitochondrial replicati 25.5 43 0.0015 27.4 2.8 22 8-29 144-165 (353)
439 3dxs_X Copper-transporting ATP 25.0 1E+02 0.0035 17.6 6.3 57 6-65 3-63 (74)
440 1x8d_A Hypothetical protein YI 24.7 1.4E+02 0.0049 19.3 4.7 32 22-54 28-60 (104)
441 2e5q_A PHD finger protein 19; 24.1 76 0.0026 18.5 2.8 13 43-55 33-45 (63)
442 2nn4_A Hypothetical protein YQ 23.7 27 0.00093 21.1 0.9 18 19-36 4-21 (72)
443 3ftd_A Dimethyladenosine trans 23.5 51 0.0017 25.3 2.7 29 7-35 96-124 (249)
444 2g9o_A Copper-transporting ATP 23.4 1.3E+02 0.0045 18.2 5.2 57 6-65 4-64 (90)
445 3iz5_X 60S ribosomal protein L 22.8 2E+02 0.007 20.2 6.1 57 126-182 90-149 (152)
446 2xmw_A PACS-N, cation-transpor 22.5 1.1E+02 0.0037 16.9 6.3 57 6-65 4-63 (71)
447 2lfv_A Protein DAMX; cell divi 28.2 18 0.00062 23.8 0.0 50 18-68 34-87 (106)
448 2gu3_A YPMB protein; APC1927, 22.0 85 0.0029 21.6 3.4 44 11-54 68-127 (136)
449 3u5e_X 60S ribosomal protein L 21.9 2.1E+02 0.0071 19.9 7.1 57 126-182 80-139 (142)
450 1wvf_A 4-cresol dehydrogenase 21.7 53 0.0018 28.4 2.8 41 22-62 217-261 (520)
451 4a17_R RPL23A, 60S ribosomal p 21.0 2.2E+02 0.0076 20.0 7.1 57 126-182 88-147 (150)
452 2yko_A LINE-1 ORF1P; RNA-bindi 20.8 1.1E+02 0.0039 23.2 4.0 75 6-80 52-149 (233)
453 1ik9_C DNA ligase IV; DNA END 20.2 72 0.0025 16.4 2.0 15 16-30 20-34 (37)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=6.3e-35 Score=228.53 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=144.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|+.|++.+|+..+.|+.|.|.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
..... .......+|||+|||..+++++|.++|+.||.|..+.++.+.
T Consensus 93 ~~~~~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 93 QRDPS---------------------------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp CCCTH---------------------------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred ccccc---------------------------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 64411 011123589999999999999999999999999999998875
Q ss_pred CC--cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 161 EG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~--g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ |||||+|.+.++|++|++.|||..+. |+.|.|..+..
T Consensus 140 ~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~----g~~i~V~~a~~ 180 (213)
T 4f02_A 140 NGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRFKS 180 (213)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEcCC
Confidence 43 69999999999999999999999999 99999998864
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=9.5e-34 Score=219.70 Aligned_cols=194 Identities=14% Similarity=0.126 Sum_probs=145.4
Q ss_pred CCCceEEEcCCC-CCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLP-SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~-~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.++++|||+||| ..+|+++|+++|++||.|..|++..+ .+|||||+|.+.++|+.|++.|||..|.|++|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 478999999999 79999999999999999999999754 479999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCC-CCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCc--eEEEEE
Q 024269 83 GSGRGPSSSDR-RGGY--GGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV--CFAEVS 157 (270)
Q Consensus 83 ~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i--~~~~~~ 157 (270)
........... .... ............ .+..........+..+|||.|||..+++++|+++|++||.| ..+.+.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~-~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~ 158 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFS-TPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVF 158 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCS-SHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEEC
T ss_pred CccCCCcccccccCCccccccCCCcccccc-CcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEE
Confidence 53211000000 0000 000000000000 00000000112356789999999999999999999999998 888888
Q ss_pred eCCC--CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 158 RDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 158 ~~~~--~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
.+.. .|+|||+|.+.++|.+|+..||+..+.+.....++.|+.
T Consensus 159 ~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 159 SGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp SCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred cCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 7642 379999999999999999999999999777777777765
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=2.2e-33 Score=211.78 Aligned_cols=160 Identities=23% Similarity=0.327 Sum_probs=142.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|++.|||..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 679999999999999999999999999999999854 56788999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 161 (270)
+... .....+|+|.|||..+++++|.++|++||.|..+.+..+..
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 5411 12347899999999999999999999999999999988763
Q ss_pred C----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 162 ~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
. |+|||+|.+.++|..|++.|++..+.+ .++.|.|.++
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEG--GSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT--CSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecC--CCeEEEEEeC
Confidence 3 599999999999999999999999971 1388888754
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=210.85 Aligned_cols=159 Identities=21% Similarity=0.369 Sum_probs=142.6
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~ 84 (270)
++|||+|||+++|+++|+++|+.||.|.+|.+.. ++.++|||||+|.+.++|..|++.|||..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999964 35678999999999999999998899999999999999987552
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC--
Q 024269 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-- 162 (270)
. ....+..+|+|+|||..+++++|.++|+.||.|..+.+..+..+
T Consensus 81 ~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 81 Q---------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp C---------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred C---------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 1 12234579999999999999999999999999999999887543
Q ss_pred --cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 --g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
|+|||+|.+.++|..|+..|+|..+. |+.|.|.+++
T Consensus 128 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~ 165 (166)
T 3md3_A 128 SRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINWAA 165 (166)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEESC
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEEEecC
Confidence 59999999999999999999999998 9999999875
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=4.4e-33 Score=209.88 Aligned_cols=158 Identities=23% Similarity=0.341 Sum_probs=140.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
++++|||+|||+++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|++.|||..+.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 478999999999999999999999999999999954 56778999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 161 (270)
+.. ......+|+|.|||..+++++|.++|+.||.|..+.+..+..
T Consensus 81 ~~~-----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 81 PSS-----------------------------------ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp CCC-----------------------------------GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCc-----------------------------------ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 541 112346899999999999999999999999999999988763
Q ss_pred C----cEEEEEecChhhHHHHHHHhCCccccCccCCce--eeeecC
Q 024269 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR--ITVKRY 201 (270)
Q Consensus 162 ~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~--i~v~~~ 201 (270)
+ |+|||+|.+.++|..|++.|+|..+. |+. |.|.++
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~~~i~v~~A 167 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS----GATEPITVKFA 167 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCT----TCSSCCEEEEC
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccC----CCccceEEEeC
Confidence 3 59999999999999999999999998 644 666543
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=4.5e-33 Score=215.38 Aligned_cols=168 Identities=13% Similarity=0.245 Sum_probs=140.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+++|+++|+++|+.||.|.+|.+.. ++.++|||||+|.+.++|++|++ +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 4678999999999999999999999999999999965 46788999999999999999999 5999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
........ ........+|||.|||..+++++|.++|+.||.|..+.++.+.
T Consensus 90 ~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 90 VSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred cCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 75522110 1112344799999999999999999999999999999999876
Q ss_pred CC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCCC
Q 024269 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 161 ~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
.+ |+|||+|.+.++|.+|+.. ++..+. |+.|.|..+.....
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~----G~~i~v~~a~~k~~ 185 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN----GHNCEVRKALSKQE 185 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEET----TEECEEEECC----
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEEC----CEEEEEEecCChhH
Confidence 43 5999999999999999987 788888 99999999875443
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=3.9e-32 Score=221.79 Aligned_cols=195 Identities=19% Similarity=0.245 Sum_probs=148.4
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
+++++|||+|||.++|+++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.+
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 86 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQY 86 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEE
Confidence 789999999999999999966 8999999999999988899999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCC----------------------CCCC-CCC------CCCC-------------------------C
Q 024269 80 AHGGSGRGPSSSDR----------------------RGGY-GGG------GAGG-------------------------A 105 (270)
Q Consensus 80 ~~~~~~~~~~~~~~----------------------~~~~-~~~------~~~~-------------------------~ 105 (270)
+............. .... ... ..+. .
T Consensus 87 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 166 (282)
T 3pgw_A 87 AKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMPP 166 (282)
T ss_pred eccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCCC
Confidence 97653210000000 0000 000 0000 0
Q ss_pred CCCCCCCCC----------------------CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCc
Q 024269 106 GGAGAGAGA----------------------GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT 163 (270)
Q Consensus 106 ~~~~~~~~~----------------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g 163 (270)
.+...++.. ........+..+|||+|||..+++++|+++|+.||.|..+.+..+. .|
T Consensus 167 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~g 245 (282)
T 3pgw_A 167 PGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-HD 245 (282)
T ss_pred CCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-Cc
Confidence 000000000 0001123356789999999999999999999999999999998765 36
Q ss_pred EEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 164 ~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
+|||+|.+.++|..|++.|+|..+.. |+.|.|.+++
T Consensus 246 ~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ak 281 (282)
T 3pgw_A 246 IAFVEFDNEVQAGAARDALQGFKITQ---NNAMKISFAK 281 (282)
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEeCC---CCEEEEEEec
Confidence 99999999999999999999998873 7899998875
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=7.3e-33 Score=210.31 Aligned_cols=163 Identities=17% Similarity=0.284 Sum_probs=140.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---C--CCCceEEEEEccHHHHHHHHHhcCCCccC---CeEEE
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---P--RPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLR 76 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~--~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~ 76 (270)
++++|||+|||+++|+++|+++|++||+|..|.+..+ + .++|||||+|.+.++|+.|++.|||..+. +++|.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 6799999999999999999999999999999999653 2 67899999999999999999999998875 68888
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEE
Q 024269 77 VELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (270)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~ 156 (270)
+.++.... .......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 82 ~~~~~~~~----------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 82 MKPADSEK----------------------------------NNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp EEECGGGC----------------------------------CSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred Eccccccc----------------------------------cccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 88876541 12234578999999999999999999999999999999
Q ss_pred EeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 157 SRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 157 ~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
+.+..+ |+|||+|.+.++|.+|++.|||..+.. ..++.|.|.+++
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-GCSSPMVVKFAD 175 (175)
T ss_dssp EECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT-TCSSCCEEEECC
T ss_pred EECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC-CCCCCeEEEecC
Confidence 888653 599999999999999999999988762 114888888763
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=4.2e-32 Score=214.81 Aligned_cols=194 Identities=15% Similarity=0.172 Sum_probs=147.1
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||+ ++++++|+++|+.||.|..|.+..+. +|||||+|.+.++|++|++.|||..|.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5789999999999 99999999999999999999997654 79999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhC-CceEEEEEeCCC
Q 024269 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSE 161 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~ 161 (270)
.....+..................................+..+|||.|||..+++++|+++|+.|| .|..+.+....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~- 188 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD- 188 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-
Confidence 6322221111100000000000000000000011112234568999999999999999999999999 99999986532
Q ss_pred CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 162 ~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
.|+|||+|.+.++|.+|++.|++..+.+ ++.|.|.+++.
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~~---g~~l~v~~a~~ 227 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLGE---NHHLRVSFSKS 227 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSS---SCBCEEEECSS
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccCC---CCeEEEEEecC
Confidence 4699999999999999999999999862 78899888753
No 10
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=2.3e-32 Score=214.58 Aligned_cols=173 Identities=18% Similarity=0.316 Sum_probs=145.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
++++|||+|||.++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 468999999999999999999999999999999954 56789999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 161 (270)
......+.. ...........+|||.|||..+++++|+++|+.||.|..+.+..+..
T Consensus 107 ~~~~~~~~~------------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 107 NIGQAQPII------------------------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp CCGGGHHHH------------------------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT
T ss_pred Cccccchhh------------------------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 441100000 00000123457999999999999999999999999999999998754
Q ss_pred C----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCC
Q 024269 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 162 ~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~ 205 (270)
+ |+|||+|.+.++|.+|++.|++..+. |+.|.|.++...+
T Consensus 163 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG----GQYLRVGKAVTPP 206 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCBCS----SSBCEEEECSSCS
T ss_pred CCCcCceEEEEecCHHHHHHHHHHccCCEeC----CcEEEEEEecCCC
Confidence 3 59999999999999999999999998 9999999987543
No 11
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=3.3e-32 Score=210.87 Aligned_cols=193 Identities=16% Similarity=0.174 Sum_probs=146.5
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 5 FSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nL~~-~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.+++|||+|||+ ++++++|+++|+.||.|..|.+..+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 368999999999 99999999999999999999997654 789999999999999999999999999999999999866
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhC-CceEEEEEeCCCC
Q 024269 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEG 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~ 162 (270)
....+..................................+..+|+|+|||..+++++|.++|+.|| .|..+.+..+. .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~ 158 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-R 158 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-S
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-C
Confidence 322221111100000000000000000011111122234578999999999999999999999999 99999986643 4
Q ss_pred cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
|+|||+|.+.++|..|+..|+|..+.+ ++.|.|.+++.
T Consensus 159 g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~a~~ 196 (198)
T 1qm9_A 159 KMALIQMGSVEEAVQALIDLHNHDLGE---NHHLRVSFSKS 196 (198)
T ss_dssp SCEEEECSSHHHHHHHHHHHTSSCCSS---CCSCCEEEECC
T ss_pred cEEEEEeCCHHHHHHHHHHhcCCccCC---CCeEEEEeecc
Confidence 799999999999999999999999862 78888887653
No 12
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=2.3e-31 Score=206.08 Aligned_cols=179 Identities=21% Similarity=0.352 Sum_probs=143.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcc----C-------ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~----G-------~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
+.+++|||+|||+++|+++|+++|+.| | .|..+.+. .++|||||+|.+.++|++|+ .|||..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 578999999999999999999999999 5 56666664 45899999999999999999 699999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCce
Q 024269 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~ 152 (270)
+.|.|.++............... ...............+|||+|||..+++++|.++|+.||.|.
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSV---------------YVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSC---------------CCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcC---------------CCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 99999998765322211000000 000011122335668999999999999999999999999999
Q ss_pred EEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCC
Q 024269 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 153 ~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+.+..+... |+|||+|.+.++|+.|++.|++..+. |+.|.|..+....
T Consensus 143 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 143 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET----TEECEEEESCCCC
T ss_pred EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEECCCCC
Confidence 9999987633 59999999999999999999999998 9999999986543
No 13
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=7.2e-32 Score=204.30 Aligned_cols=155 Identities=23% Similarity=0.428 Sum_probs=138.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcc----C-------ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~----G-------~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
+++++|||+|||+++|+++|+++|+.| | .|.++.+. .++|||||+|.++++|++|+ .|||..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 478999999999999999999999999 6 77777775 34899999999999999999 699999999
Q ss_pred eEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCce
Q 024269 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~ 152 (270)
++|.|.++..... .....+|+|+|||..+++++|.++|++||.|.
T Consensus 78 ~~i~v~~~~~~~~-----------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-----------------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp EECEEECCSSCCC-----------------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ceeeecCCcccCC-----------------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 9999998764411 12257899999999999999999999999999
Q ss_pred EEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 153 ~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
.+.+..+... |+|||+|.+.++|.+|++.|++..+. |+.|.|..+
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~A 171 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRA 171 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC----CeEEEEEeC
Confidence 9999988643 59999999999999999999999998 999999876
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.98 E-value=1.5e-32 Score=208.75 Aligned_cols=161 Identities=14% Similarity=0.225 Sum_probs=139.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE--ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+++++|||+|||.++|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|++|++ |||..|.|++|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCC
Confidence 67899999999999999999999999997766323 3457889999999999999999996 99999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~ 161 (270)
.... .......+|||.|||..+++++|+++|+.||.|..+ ......
T Consensus 90 ~~~~---------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~ 135 (175)
T 1fje_B 90 GRDS---------------------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKS 135 (175)
T ss_dssp CSSC---------------------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSC
T ss_pred Cccc---------------------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCC
Confidence 5421 122356799999999999999999999999998777 223344
Q ss_pred CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 162 ~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
.|+|||+|.+.++|.+|++.|+|..+. |+.|.|.++..
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~~ 173 (175)
T 1fje_B 136 KGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYYTGE 173 (175)
T ss_dssp CSEEEEECSSHHHHHHHHHHHTEEEET----TEEEEEEECSS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEecCC
Confidence 479999999999999999999999999 99999998864
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.98 E-value=2.5e-32 Score=205.80 Aligned_cols=158 Identities=18% Similarity=0.365 Sum_probs=139.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
+++++|||+|||+++|+++|+++|+.||.|.+|.+.. ++.++|||||+|.+.++|+.|+.. +..++|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999964 478899999999999999999994 57899999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
.+.. ......+|||+|||..+++++|.++|+.||.|..+.+..+.
T Consensus 79 ~~~~-----------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 79 IPRD-----------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CCHH-----------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred cchh-----------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 6431 11234689999999999999999999999999999998775
Q ss_pred CC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ |+|||+|.+.++|.+|++ +++..+. |+.|.|..+..
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~V~~a~p 165 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK----DRKIEIKRAEP 165 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSS----SSCEEEEECCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeC----CeEEEEeecCC
Confidence 43 699999999999999998 8999998 99999998864
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=8.1e-31 Score=211.40 Aligned_cols=157 Identities=25% Similarity=0.340 Sum_probs=140.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||+++|+++|+++|+.||.|..|.+.. ++|||||+|.+.++|..|+..|||..|.|+.|.|.++.+.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 4568999999999999999999999999999999964 4899999999999999999999999999999999997643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-
Q 024269 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~- 162 (270)
.+|||+|||..+++++|.++|..||.|..+.++.+..+
T Consensus 97 -----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 135 (261)
T 3sde_A 97 -----------------------------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR 135 (261)
T ss_dssp -----------------------------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSC
T ss_pred -----------------------------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCC
Confidence 58999999999999999999999999999999887543
Q ss_pred --cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCC
Q 024269 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 163 --g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~ 204 (270)
|+|||+|.+.++|..|+..|++..+.....++.|.|..+...
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 699999999999999999996655544445788888887643
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1.9e-30 Score=212.07 Aligned_cols=166 Identities=18% Similarity=0.239 Sum_probs=147.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|.++|+.||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..|+|++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999999998854 5678999999999999999999989999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCC-CHHHHHHHHHHhCCceEEEEEeC
Q 024269 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~i~~~~~~~~ 159 (270)
..... ........+|||.|||..+ ++++|.++|+.||.|..+.++.+
T Consensus 173 ~~~~~--------------------------------~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 173 DAGQL--------------------------------TPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CGGGC--------------------------------CTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred CCCCC--------------------------------CcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 76521 1122345789999999995 99999999999999999999887
Q ss_pred CCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCC
Q 024269 160 SEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 160 ~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~ 205 (270)
..+ |+|||+|.+.++|..|+..|+|..+. |+.|.|.++....
T Consensus 221 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a~~~~ 265 (284)
T 3smz_A 221 QDGQLKGFAVLEYETAEMAEEAQQQADGLSLG----GSHLRVSFCAPGP 265 (284)
T ss_dssp SSCCEEEEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCSSS
T ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeEEEEEEecCCC
Confidence 544 69999999999999999999999998 9999999986543
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=7.1e-30 Score=208.59 Aligned_cols=151 Identities=23% Similarity=0.280 Sum_probs=139.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|+.|| |..+.+ +.++|||||+|.+.++|..|+..|||..|.|++|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC
Confidence 4679999999999999999999999999 999988 456899999999999999999999999999999999985422
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-
Q 024269 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~- 162 (270)
.+|||+|||..+++++|.++|..||.|..+.++.+..+
T Consensus 96 -----------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 96 -----------------------------------------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp -----------------------------------------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred -----------------------------------------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 68999999999999999999999999999999887643
Q ss_pred ---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
|+|||+|.+.++|..|+..|++..+. |+.|.|..+..
T Consensus 135 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v~~a~~ 174 (284)
T 3smz_A 135 QSKGYGFAEYMKKDSAARAKSDLLGKPLG----PRTLYVHWTDA 174 (284)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCG
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 59999999999999999999999998 99999998864
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=3.9e-30 Score=210.94 Aligned_cols=167 Identities=13% Similarity=0.263 Sum_probs=142.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccC-ceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G-~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
++++|||+|||+.+|+++|.++|+.|| .|..|.+..+ +.++|||||+|.+.++|..|+..|||..|.|+.|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999553 5789999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCC-CCHHHHHHHHHHhCCceEEEEEeCC
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~ 160 (270)
+....... ........+|||.|||.. +++++|.++|+.||.|..+.++.+.
T Consensus 196 ~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 196 PLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp CC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 65321110 112335579999999999 9999999999999999999998865
Q ss_pred C-----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCC
Q 024269 161 E-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~ 204 (270)
. .|+|||+|.+.++|..|+ .|+|..+. |+.|.|.++..+
T Consensus 248 ~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~----g~~i~V~~a~~k 291 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG----NREISVSLADKK 291 (292)
T ss_dssp C---CCCEEEEEEESSHHHHHHHG-GGTTEEET----TEEEEEEECCCC
T ss_pred CcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC----CcEEEEEEecCC
Confidence 4 369999999999999999 99999998 999999988654
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=9.3e-30 Score=208.73 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=135.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
+++++|||+|||+++|+++|+++|+.||.|..|.|..+ ..++|||||+|.+.++|..|++ +||..|.|+.|.|.++..
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECCC
Confidence 57899999999999999999999999999999999664 3458999999999999999996 999999999999998642
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhC-CceEEEEEeCC-
Q 024269 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS- 160 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~- 160 (270)
.+|||+|||..+++++|.++|..|| .|..+.++.+.
T Consensus 118 ------------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 118 ------------------------------------------CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp ------------------------------------------CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred ------------------------------------------CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 5899999999999999999999999 99999998765
Q ss_pred --CCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 161 --EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 --~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
..|+|||+|.+.++|..|+..|++..+. |+.|.|..+..
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~ 196 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIE----GYTLVTKVSNP 196 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 3479999999999999999999999998 89999998764
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=5.3e-25 Score=154.92 Aligned_cols=109 Identities=22% Similarity=0.297 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.+++|||+|||+++|+++|+++|++||.|.+|.|..+ +.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 3678999999999999999999999999999999654 457899999999999999999999999999999999998865
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHH
Q 024269 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQD 140 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 140 (270)
....... ........+|||.|||+.+|++.
T Consensus 84 ~~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC-------------------------------------------------------
T ss_pred ccccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 3222111 11122335799999999998764
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.90 E-value=1.4e-22 Score=173.48 Aligned_cols=81 Identities=30% Similarity=0.533 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|.++|++||.|..|.|+. ++.++|||||+|.+.++|++||..|||..|.|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4568999999999999999999999999999999964 5788999999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 180 ~~~~ 183 (437)
T 3pgw_S 180 RGRT 183 (437)
T ss_pred CCCC
Confidence 8663
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=3.9e-23 Score=141.10 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=73.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||+++|+++|+++|++||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|++|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 568999999999999999999999999999999964 47789999999999999999999999999999999999987
Q ss_pred C
Q 024269 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.88 E-value=8.6e-23 Score=143.81 Aligned_cols=106 Identities=26% Similarity=0.363 Sum_probs=94.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
...++++|||+|||..+|+++|+++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34688999999999999999999999999999999998888889999999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCC
Q 024269 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD 150 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 150 (270)
+.... .+++...++++|.++|++||.
T Consensus 84 ~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 54110 345667788999999999984
No 25
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=135.90 Aligned_cols=81 Identities=59% Similarity=1.034 Sum_probs=77.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
..+.++|||+|||.++|+++|+++|++||.|..|.|..++.+++||||+|.+.++|++|++.||+..|+|+.|.|+++++
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 36789999999999999999999999999999999988888899999999999999999999999999999999999987
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 6
No 26
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=2.4e-22 Score=135.10 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=71.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccC-ceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhc-CCCccCCeEEEEEec
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELA 80 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G-~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~~~ 80 (270)
|++|||+|||+++|+++|+++|++|| .|.+|.|.. ++.++|||||+|.+.++|++|++.+ ++..|+|++|.|+++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 68999999999999999999999999 899999854 4788999999999999999999877 457899999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8763
No 27
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1e-21 Score=133.82 Aligned_cols=79 Identities=20% Similarity=0.287 Sum_probs=72.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC--CCccCCeEEEEEec
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~~ 80 (270)
..++++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|++.++|+.|++.|+ +..|.|++|.|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 478899999999999999999999999999999999865 8999999999999999999886 47899999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
+...
T Consensus 90 ~~~~ 93 (105)
T 1sjq_A 90 NHKE 93 (105)
T ss_dssp SSSS
T ss_pred CCCC
Confidence 8763
No 28
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=136.00 Aligned_cols=81 Identities=19% Similarity=0.294 Sum_probs=75.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
..+.++|||+|||+++|+++|+++|++||.|.+|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 36889999999999999999999999999999999965 467899999999999999999999999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
Confidence 8754
No 29
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=131.11 Aligned_cols=77 Identities=17% Similarity=0.187 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCc--cCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--~~g~~l~v~~~~ 81 (270)
.++++|||+|||+.+|+++|.++|++||.|.+|.+.. .+|+|||+|++.++|..|++.||+.. |.|++|.|++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~ 95 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYST 95 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEecc
Confidence 6899999999999999999999999999999999974 48999999999999999999999865 789999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
.+
T Consensus 96 ~k 97 (100)
T 3r27_A 96 SQ 97 (100)
T ss_dssp CS
T ss_pred cc
Confidence 65
No 30
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=1.7e-21 Score=126.54 Aligned_cols=75 Identities=12% Similarity=0.141 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
-.+..|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|++|++.||+..+.|++|.|.++.
T Consensus 5 ~~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 5 WGSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 4678999999999999999999999999999999975 59999999999999999999999999999999999984
No 31
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=4.2e-21 Score=135.03 Aligned_cols=84 Identities=25% Similarity=0.451 Sum_probs=77.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
|...++++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3447889999999999999999999999999999999965 57889999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024269 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
+++...
T Consensus 82 ~a~~~~ 87 (116)
T 2fy1_A 82 QAKKPS 87 (116)
T ss_dssp ECCCSS
T ss_pred ECCCCC
Confidence 998663
No 32
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=1.3e-21 Score=134.47 Aligned_cols=76 Identities=45% Similarity=0.718 Sum_probs=72.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~ 84 (270)
++|||+|||.++|+++|+++|++||+|..|.+..+ ++|||||+|.+.++|++|++.|||..|.|+.|.|.++.+..
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999766 78999999999999999999999999999999999998763
No 33
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=3.8e-21 Score=141.79 Aligned_cols=138 Identities=18% Similarity=0.164 Sum_probs=111.7
Q ss_pred CCCCceEEEEEccHHHHHHHHHhc-CCCccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024269 42 PRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGIS 120 (270)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (270)
...+|+++|+|.+.++|++|++.| ||..++| .|.+.++............ .........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~ 69 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------------HHHHMHRDS 69 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------CCCCSCSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------ccccccccC
Confidence 366899999999999999999999 9999999 9999987653111000000 000111233
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+ ..|||||+|.+.++|..|+..|++..+. |+.|.|..
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLC----GCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSS----SSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 445689999999999999999999999999999999887 3479999999999999999999999998 99999998
Q ss_pred CCCC
Q 024269 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
+...
T Consensus 145 a~~~ 148 (150)
T 2i2y_A 145 SNGE 148 (150)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 8653
No 34
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=4.1e-21 Score=142.93 Aligned_cols=144 Identities=15% Similarity=0.071 Sum_probs=105.0
Q ss_pred EEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024269 36 IELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGA 114 (270)
Q Consensus 36 ~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (270)
+.|..+ ..++|||||+|.+.++|++|+..+++....+..+.+............. ..
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 60 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------HH 60 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------------CC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------------cc
Confidence 445333 3679999999999999999998887643333333332211110000000 00
Q ss_pred CCCCCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCc
Q 024269 115 GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 115 ~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 190 (270)
...........+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.|++..+.
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 138 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-- 138 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS--
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 011222345689999999999999999999999999999999887533 69999999999999999999999998
Q ss_pred cCCceeeeecCCCCC
Q 024269 191 WARGRITVKRYDRSP 205 (270)
Q Consensus 191 ~~~~~i~v~~~~~~~ 205 (270)
|+.|.|..+....
T Consensus 139 --g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 139 --GRELRVQMARYGR 151 (158)
T ss_dssp --SSEEEEEEECCSS
T ss_pred --CeEEEEEECCCCC
Confidence 9999999987543
No 35
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.86 E-value=9.5e-21 Score=130.54 Aligned_cols=79 Identities=19% Similarity=0.411 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..|.|+.|.|.++.+.
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 578999999999999999999999999999999987 679999999999999999999999999999999999877
Q ss_pred CCCC
Q 024269 84 SGRG 87 (270)
Q Consensus 84 ~~~~ 87 (270)
....
T Consensus 84 ~~~~ 87 (103)
T 2dgu_A 84 DQKR 87 (103)
T ss_dssp CCCC
T ss_pred cccc
Confidence 4433
No 36
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=137.23 Aligned_cols=80 Identities=19% Similarity=0.367 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
.++++|||+|||+.+++++|+ ++|++||.|.+|.+..++.++|||||+|.+.++|..|+..|||..|.|++|.|.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~ 106 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITF 106 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEE
Confidence 578999999999999999876 6999999999999988889999999999999999999999999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 107 a~~~ 110 (127)
T 2a3j_A 107 SETP 110 (127)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 9865
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.8e-21 Score=128.78 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+|+++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|++.|||..|.|++|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 368899999999999999999999999999999999653 67899999999999999999999999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9876
No 38
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=7.5e-21 Score=130.15 Aligned_cols=81 Identities=28% Similarity=0.386 Sum_probs=76.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|++|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 85 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPS 85 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 6889999999999999999999999999999999954 5678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 86 ~~~~ 89 (99)
T 1whw_A 86 TIKK 89 (99)
T ss_dssp CCCS
T ss_pred CCCc
Confidence 8763
No 39
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=3.9e-21 Score=131.31 Aligned_cols=81 Identities=22% Similarity=0.355 Sum_probs=75.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec------CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEE
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (270)
+.++++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|+|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46889999999999999999999999999999999964 236789999999999999999999999999999999
Q ss_pred EEecCCC
Q 024269 77 VELAHGG 83 (270)
Q Consensus 77 v~~~~~~ 83 (270)
|.++...
T Consensus 82 V~~a~~~ 88 (98)
T 2cpf_A 82 VRISERA 88 (98)
T ss_dssp EECSSCS
T ss_pred EEEccCC
Confidence 9999876
No 40
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=130.04 Aligned_cols=81 Identities=33% Similarity=0.495 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.+.++|||+|||..+|+++|+++|+.||.|..|.|..+ ..++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 92 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCC
Confidence 67899999999999999999999999999999999764 44689999999999999999999999999999999999987
Q ss_pred CC
Q 024269 83 GS 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 93 ~~ 94 (103)
T 2cqi_A 93 PS 94 (103)
T ss_dssp TT
T ss_pred Cc
Confidence 63
No 41
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.85 E-value=1.6e-21 Score=166.95 Aligned_cols=77 Identities=14% Similarity=0.209 Sum_probs=70.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|.++|.+||.|..|.|+.+.. .|||||+|.+.++|+.||+.||+..|. |..|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC----CEEEE
Confidence 3457999999999999999999999999999999987753 369999999999999999999999998 99999
Q ss_pred eecCC
Q 024269 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|.++.
T Consensus 176 V~~a~ 180 (437)
T 3pgw_S 176 VDVER 180 (437)
T ss_pred EEEeC
Confidence 99886
No 42
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=2.8e-21 Score=131.68 Aligned_cols=77 Identities=18% Similarity=0.179 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCC--CccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~~ 80 (270)
+++++|||+|||+ .+|+++|+++|++||.|.+|.|+.+ ++||||+|++.++|+.|++.||+ ..|.|++|.|.++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 89 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLS 89 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEEC
Confidence 6899999999999 9999999999999999999999754 68999999999999999998886 4599999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
+..
T Consensus 90 ~~~ 92 (102)
T 1x4d_A 90 QKY 92 (102)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 43
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=5.9e-21 Score=129.86 Aligned_cols=79 Identities=25% Similarity=0.535 Sum_probs=74.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
++++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5799999999999999999999999999999999653 6789999999999999999999999999999999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 44
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.9e-20 Score=131.80 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=76.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024269 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87743
No 45
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.6e-20 Score=128.44 Aligned_cols=80 Identities=24% Similarity=0.467 Sum_probs=75.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++ ||+..|+|+.|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 6789999999999999999999999999999999965 46789999999999999999999 9999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8763
No 46
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.3e-21 Score=133.57 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=73.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC--CCccCCeEEEEEec
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~~ 80 (270)
..++++|||+|||+++|+++|+++|+.||.|.+|.|..+ +|||||+|++.++|++|++.|+ +..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 368899999999999999999999999999999999765 7999999999999999999887 47899999999999
Q ss_pred CCCCC
Q 024269 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
+....
T Consensus 105 ~~k~~ 109 (119)
T 2ad9_A 105 NHKEL 109 (119)
T ss_dssp SSSSC
T ss_pred cCCCC
Confidence 87643
No 47
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=5.9e-21 Score=126.89 Aligned_cols=78 Identities=32% Similarity=0.551 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|+.|++.|||..|+|++|.|+++
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 84 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 6889999999999999999999999999999999843 4678999999999999999999999999999999999997
Q ss_pred C
Q 024269 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 85 k 85 (85)
T 3mdf_A 85 K 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.2e-21 Score=130.92 Aligned_cols=82 Identities=23% Similarity=0.319 Sum_probs=76.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec-CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 35789999999999999999999999999999999965 46778999999999999999999999999999999999998
Q ss_pred CCC
Q 024269 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
+..
T Consensus 92 ~~~ 94 (103)
T 2d9p_A 92 RKE 94 (103)
T ss_dssp SCC
T ss_pred ccc
Confidence 764
No 49
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=7.3e-21 Score=131.18 Aligned_cols=81 Identities=35% Similarity=0.495 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 57899999999999999999999999999999999653 678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8763
No 50
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=2.4e-21 Score=132.13 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=76.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEE
Q 024269 1 MSGRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 1 m~~~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (270)
|+..++++|||+|||.++++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|+.|+..|||..|+|+.|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 455889999999999999999999 9999999999999987777789999999999999999999999999999999
Q ss_pred EEecCCC
Q 024269 77 VELAHGG 83 (270)
Q Consensus 77 v~~~~~~ 83 (270)
|.++.+.
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999865
No 51
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.4e-20 Score=128.38 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhc--CCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~g~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|..+ +|||||+|.+.++|+.|++.| ++..|.|++|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~ 89 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSN 89 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcC
Confidence 68899999999999999999999999999999988754 899999999999999999976 5688999999999998
Q ss_pred CCC
Q 024269 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 90 ~~~ 92 (101)
T 2cq1_A 90 HKE 92 (101)
T ss_dssp CSS
T ss_pred ccc
Confidence 663
No 52
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=7.9e-21 Score=125.68 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=73.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
+.+|||+|||.++++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|+.|+..|||..|+|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47899999999999999999999999999999964 467899999999999999999999999999999999999986
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 53
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2.4e-20 Score=128.52 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.+.++|||+|||.++|+++|+++|+.||.|..|.|..+ ..++|||||+|.+.++|++|+..|||..|+|+.|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 57899999999999999999999999999999999654 35799999999999999999999999999999999999987
Q ss_pred CC
Q 024269 83 GS 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 93 ~~ 94 (103)
T 2cq3_A 93 RV 94 (103)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 54
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=128.21 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHH----HHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~----~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
.+.++|||+|||..+++++|+ ++|++||.|..|.|..+...+|||||+|.+.++|++|++.|||..|+|++|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999976644489999999999999999999999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+++.
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9865
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2e-21 Score=131.09 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=70.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCc--eEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCC----ccCCeE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR--ILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGCR 74 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~--i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~----~~~g~~ 74 (270)
..=.||||+|||+++|+++|+++|++||. |.+|.+.. ++.++|||||+|.+.++|++|++.|||. .|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34479999999999999999999999995 66888854 4789999999999999999999999996 489999
Q ss_pred EEEEecCC
Q 024269 75 LRVELAHG 82 (270)
Q Consensus 75 l~v~~~~~ 82 (270)
|.|++|+.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 56
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=129.08 Aligned_cols=82 Identities=24% Similarity=0.372 Sum_probs=75.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEE-EEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-ELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~-~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
..++++|||+|||.++|+++|+++|+.||.|..| .|.. ++.++|||||+|.+.++|++|+..|||..|.|++|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3678999999999999999999999999999999 8854 46789999999999999999999999999999999999
Q ss_pred ecCCCC
Q 024269 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++.+..
T Consensus 82 ~a~~~~ 87 (96)
T 1x5t_A 82 YAFKKD 87 (96)
T ss_dssp ESCCCC
T ss_pred EecccC
Confidence 998763
No 57
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.1e-21 Score=131.00 Aligned_cols=81 Identities=31% Similarity=0.509 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 6789999999999999999999999999999999954 3678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 90 ~~~~ 93 (102)
T 2cqb_A 90 KPMR 93 (102)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 8764
No 58
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.8e-20 Score=129.67 Aligned_cols=81 Identities=28% Similarity=0.398 Sum_probs=75.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8763
No 59
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=127.76 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=73.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|++|++.|||..|.|++|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 57899999999999999999999999999999999653 678999999999999999999999999999999999997
Q ss_pred C
Q 024269 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3e-20 Score=130.51 Aligned_cols=81 Identities=19% Similarity=0.245 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+++++|||+|||..+|+++|+++|..||.|..|.|.. ++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 6789999999999999999999999999999999954 46678999999999999999999999999999999999997
Q ss_pred CCC
Q 024269 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 93 ~~~ 95 (114)
T 2do0_A 93 RAL 95 (114)
T ss_dssp CCC
T ss_pred cCC
Confidence 653
No 61
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.84 E-value=1e-20 Score=127.67 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=76.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec-CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
..++++|||+|||.++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 47889999999999999999999999999999999965 56788999999999999999999999999999999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 62
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=7.6e-21 Score=131.08 Aligned_cols=81 Identities=33% Similarity=0.512 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5789999999999999999999999999999999964 4678899999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 63
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=5e-20 Score=129.76 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.||+ .|.|+.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 5789999999999999999999999999999999954 467899999999999999999999998 899999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 755
No 64
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=6.8e-21 Score=127.18 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 5788999999999999999999999999999999954 4677899999999999999999999999999999999998
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 65
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.4e-20 Score=128.97 Aligned_cols=80 Identities=23% Similarity=0.438 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999999965 46778999999999999999999999999999999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 66
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=126.05 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCC---C-CCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP---R-PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~---~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
..+++|||+|||.++|+++|+++|+.||.|..|.+..+. . ++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 367899999999999999999999999999999995532 2 789999999999999999999999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9765
No 67
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=129.63 Aligned_cols=80 Identities=34% Similarity=0.549 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|++.|||..|.|++|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 6889999999999999999999999999999999965 4678999999999999999999999999999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 90 ~~~ 92 (102)
T 1x5s_A 90 GKS 92 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 876
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1e-20 Score=133.05 Aligned_cols=82 Identities=21% Similarity=0.506 Sum_probs=75.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5679999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024269 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.+...
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87643
No 69
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2e-20 Score=128.33 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCC--CccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g--~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|++||.|..|.|..+ +|||||+|.+.++|..|++.|++ ..|.|++|.|+++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 57899999999999999999999999999999998753 89999999999999999998865 45999999999998
Q ss_pred CCC
Q 024269 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 90 ~~~ 92 (104)
T 1wex_A 90 SKR 92 (104)
T ss_dssp SSS
T ss_pred Ccc
Confidence 763
No 70
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.9e-20 Score=129.07 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec----CCCCCceEEEEEccHHHHHHHHHhc-CCCccCCeEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~ 78 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..| |+..|.|+.|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 5789999999999999999999999999999999943 4678999999999999999999999 9999999999999
Q ss_pred ecCCCC
Q 024269 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++.+..
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998763
No 71
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=128.78 Aligned_cols=80 Identities=24% Similarity=0.396 Sum_probs=74.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC----CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
..+.++|||+|||.++|+++|+++|+.|| |..|.|..+ +.++|||||+|.+.++|++|+ .||+..|.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35789999999999999999999999999 999999654 677999999999999999999 799999999999999
Q ss_pred ecCCCC
Q 024269 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++.+..
T Consensus 90 ~a~~~~ 95 (104)
T 1wi8_A 90 VADQAQ 95 (104)
T ss_dssp ECCCCC
T ss_pred EccCCC
Confidence 998763
No 72
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=124.27 Aligned_cols=75 Identities=33% Similarity=0.628 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|++.|||..|+|+.|.|.++.+.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 80 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNK 80 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCC
Confidence 688999999999999999999999999999999998 789999999999999999999999999999999999876
No 73
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.3e-20 Score=127.99 Aligned_cols=79 Identities=30% Similarity=0.444 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|+.||.|..|.+..+ +.++|||||+|.+.++|++|++.|||..|+|++|.|+++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 57899999999999999999999999999999999653 677899999999999999999999999999999999998
Q ss_pred CC
Q 024269 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
+.
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 74
No 74
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=129.34 Aligned_cols=80 Identities=20% Similarity=0.415 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcC------CCccCCeE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRD------GYNFDGCR 74 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~------g~~~~g~~ 74 (270)
.++++|||+|||+++|+++|+++|..||.|..|.|.. ++.++|||||+|.+.++|++|++.|| +..|+|+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5789999999999999999999999999999999965 36789999999999999999999999 99999999
Q ss_pred EEEEecCCC
Q 024269 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|.|.++.+.
T Consensus 93 l~v~~a~~~ 101 (111)
T 1x4h_A 93 LKVDLAVTR 101 (111)
T ss_dssp EEEECCCCC
T ss_pred EEEEECCCC
Confidence 999999876
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=2.5e-20 Score=128.97 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCC---eEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG---CRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g---~~l~v~ 78 (270)
.++++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999965 46778999999999999999999999999988 999999
Q ss_pred ecCCCCC
Q 024269 79 LAHGGSG 85 (270)
Q Consensus 79 ~~~~~~~ 85 (270)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987643
No 76
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.6e-20 Score=130.23 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46789999999999999999999999999999999653 677899999999999999999999999999999999998
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 765
No 77
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.1e-20 Score=124.17 Aligned_cols=76 Identities=34% Similarity=0.610 Sum_probs=72.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|++|+..|||..|.|+.|.|.++.+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 3678999999999999999999999999999999997 56999999999999999999999999999999999987
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 82 ~ 82 (92)
T 2dgt_A 82 R 82 (92)
T ss_dssp C
T ss_pred C
Confidence 6
No 78
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=127.26 Aligned_cols=79 Identities=25% Similarity=0.415 Sum_probs=73.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+.+++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|++.|||..|+|++|.|.+++
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 57899999999999999999999999999999999654 6678999999999999999999999999999999999986
Q ss_pred C
Q 024269 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 4
No 79
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.5e-20 Score=128.45 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=75.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCcc---CCeEEE
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLR 76 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---~g~~l~ 76 (270)
..+.++|||+|||.++|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 36789999999999999999999999999999999965 467899999999999999999999999887 899999
Q ss_pred EEecCCCC
Q 024269 77 VELAHGGS 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++.+..
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998763
No 80
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=4.6e-20 Score=125.68 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC--CeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~~~ 81 (270)
.++++|||+|||.++|+++|+++|++||.|..|.+... +|||||+|.+.++|++|++.|||..|. |+.|.|.+++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57899999999999999999999999999999998754 789999999999999999999999999 9999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 81
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=9.4e-20 Score=126.57 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=72.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCC-----eEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~l~v~ 78 (270)
...++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++||+.|||..|.| +.|.|+
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 46799999999999999999999999999999999865 899999999999999999999999999 999999
Q ss_pred ecCCCC
Q 024269 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++.+..
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998763
No 82
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=129.19 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=75.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHHhccCceE-EEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeE---
Q 024269 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRIL-DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--- 74 (270)
Q Consensus 2 ~~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~-~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--- 74 (270)
+..++++|||+|||+++++++|+++|++||.|. .|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 347899999999999999999999999999999 999854 4678899999999999999999999999999999
Q ss_pred -EEEEecCCC
Q 024269 75 -LRVELAHGG 83 (270)
Q Consensus 75 -l~v~~~~~~ 83 (270)
|.|.++.+.
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998865
No 83
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=1.8e-20 Score=134.11 Aligned_cols=80 Identities=30% Similarity=0.465 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|++|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5789999999999999999999999999999999965 4688999999999999999999999999999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 865
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=2.4e-20 Score=128.00 Aligned_cols=79 Identities=16% Similarity=0.340 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+++|+++|.++|+.||+|.+|.|..+ +.++|||||+|.+.++|+.|+. +||..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 46789999999999999999999999999999999654 6789999999999999999999 99999999999999886
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 88 ~~ 89 (103)
T 1s79_A 88 DY 89 (103)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 85
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=6.7e-20 Score=123.06 Aligned_cols=75 Identities=32% Similarity=0.554 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|+.|+..|||..|+|+.|.|.++.+.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 678999999999999999999999999999999997 569999999999999999999999999999999999876
No 86
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=3e-20 Score=129.66 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 4678999999999999999999999999999999964 4678999999999999999999999999999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 865
No 87
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=2.5e-20 Score=129.36 Aligned_cols=80 Identities=26% Similarity=0.468 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|++.|||..|+|++|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5789999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 865
No 88
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.7e-21 Score=129.23 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=67.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccC--ceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G--~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.+|||+|||.++|+++|+++|+.|| .|.+|.+.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5899999999999999999999999 999999855 57889999999999999999999999999999999999988
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 66
No 89
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=2.2e-20 Score=128.97 Aligned_cols=78 Identities=26% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC--CCccCCeEEEEEe
Q 024269 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~-~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l~v~~ 79 (270)
..++++|||+|||++ +|+++|+++|++||.|.+|.|.. ++|||||+|++.++|+.|++.|| +..|.|++|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 368999999999998 99999999999999999999974 48999999999999999999885 4679999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
++..
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 9865
No 90
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.82 E-value=2.8e-20 Score=131.47 Aligned_cols=78 Identities=23% Similarity=0.546 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|+.|++.|||..|+|+.|.|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 5679999999999999999999999999999999964 4688999999999999999999999999999999999987
Q ss_pred C
Q 024269 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 91
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=5.6e-20 Score=126.66 Aligned_cols=79 Identities=28% Similarity=0.496 Sum_probs=73.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
..+.++|||+|||.++|+++|+++|+.|| |..|.|..+ +.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 36789999999999999999999999997 999999653 677899999999999999999 6999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9876
No 92
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.82 E-value=1.2e-20 Score=129.17 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=73.9
Q ss_pred CCCceEEEcCCCC------CCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCC-e
Q 024269 4 RFSRTIYVGNLPS------DIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-C 73 (270)
Q Consensus 4 ~~~~~l~v~nL~~------~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~ 73 (270)
..+++|||+|||. ++++++|+++|++||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999999954 47789999999999999999999999999999 9
Q ss_pred EEEEEecCCC
Q 024269 74 RLRVELAHGG 83 (270)
Q Consensus 74 ~l~v~~~~~~ 83 (270)
+|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998643
No 93
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=4.2e-20 Score=128.28 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5789999999999999999999999999999999854 56778999999999999999999999999999999999975
No 94
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=129.36 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceE--------EEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--------DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~--------~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
.++++|||+|||..+|+++|+++|+.||.|. .|.|.. ++.++|||||+|.+.++|++|++.|||..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999998 588854 46889999999999999999999999999999
Q ss_pred eEEEEEecCCCC
Q 024269 73 CRLRVELAHGGS 84 (270)
Q Consensus 73 ~~l~v~~~~~~~ 84 (270)
+.|.|.++....
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999998763
No 95
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=126.08 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=75.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCc-eEEEEEe-c---CCCCCceEEEEEccHHHHHHHHHhcC--CCccCCeEE
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELK-I---PPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRL 75 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~-i~~~~~~-~---~~~~~g~afV~f~~~~~a~~A~~~l~--g~~~~g~~l 75 (270)
+.++++|||+|||..+|+++|+++|..||. |..|.+. . ++.++|||||+|.+.++|+.|+..|| +..|.|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 367899999999999999999999999998 9999986 3 35789999999999999999999996 599999999
Q ss_pred EEEecCCCCC
Q 024269 76 RVELAHGGSG 85 (270)
Q Consensus 76 ~v~~~~~~~~ 85 (270)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 96
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=2.3e-20 Score=130.31 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=73.8
Q ss_pred CCCceEEEcCCCCCCCHHHHH---HHHhccCceEEEEEecCC------CCCceEEEEEccHHHHHHHHHhcCCCccCCeE
Q 024269 4 RFSRTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~---~~F~~~G~i~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
.+.++|||+|||+++++++|. ++|++||+|..|.|..+. .++|||||+|.+.++|++|++.|||..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 467899999999999999999 999999999999996542 56699999999999999999999999999999
Q ss_pred EEEEecCCC
Q 024269 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|.|.++.+.
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999999876
No 97
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=3.3e-20 Score=128.57 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
...++|||+|||+++|+++|+++|++|| .|..+.+.. ..++|||||+|.+.++|++|++.|||..|+|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4568999999999999999999999999 899998853 35799999999999999999999999999999999999875
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 98
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=126.40 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=73.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||..+|+++|+++|+.||.|..|.|..+ +|||||+|.+.++|+.|+..|||..|.|+.|.|.++.+.
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 46789999999999999999999999999999999865 899999999999999999999999999999999999876
Q ss_pred C
Q 024269 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 99
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=4.5e-20 Score=127.51 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=74.0
Q ss_pred CCCceEEEcCCCCCC------CHHHHHHHHhccCceEEEEEe-cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCe-EE
Q 024269 4 RFSRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RL 75 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~------t~~~l~~~F~~~G~i~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l 75 (270)
..+++|||+|||..+ |+++|+++|++||.|..|.|. .++.++|||||+|.+.++|+.|+..|||..|+|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 789999999999999999985 4678899999999999999999999999999998 99
Q ss_pred EEEecCCC
Q 024269 76 RVELAHGG 83 (270)
Q Consensus 76 ~v~~~~~~ 83 (270)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998765
No 100
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=3.3e-20 Score=126.89 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=72.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEE--------EEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
.+.++|||+|||.++|+++|+++|++||.|.. |.+.. ++.++|||||+|.+.++|+.|++.|||..|.|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 57899999999999999999999999999999 88854 46789999999999999999999999999999
Q ss_pred eEEEEEecC
Q 024269 73 CRLRVELAH 81 (270)
Q Consensus 73 ~~l~v~~~~ 81 (270)
+.|.|++++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 101
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=9.9e-20 Score=123.81 Aligned_cols=75 Identities=25% Similarity=0.550 Sum_probs=71.4
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. ++++++|+++|+.||.|..|.+. +|||||+|.+.++|++|+..|||..|+|+.|.|++++.
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 6889999999998 99999999999999999999984 89999999999999999999999999999999999875
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 102
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.7e-20 Score=128.93 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCce----EEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i----~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
.++++|||+|||.++|+++|+++|+.||.| ..+.+. ++.++|||||+|.+.++|+.|+..|||..|.|++|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 555555 788899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024269 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+.+..
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98763
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.9e-20 Score=128.67 Aligned_cols=80 Identities=28% Similarity=0.494 Sum_probs=74.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.+.++|||+|||.++|+++|+++|++||.|..|.+..+ +.++|||||+|.+.++|++|++.|||..|+|+.|.|.++.+
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57899999999999999999999999999999999653 45799999999999999999999999999999999999886
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 4
No 104
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.82 E-value=8.4e-20 Score=122.37 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||.++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|+ .|||..|.|+.|.|.+++
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 468999999999999999999999999999999954 5688999999999999999999 799999999999999987
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 105
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=2.3e-20 Score=122.79 Aligned_cols=72 Identities=28% Similarity=0.469 Sum_probs=67.0
Q ss_pred CceEEEcCCCCCC------CHHHHHHHHhccCceEEEEEe-cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCe-EEEE
Q 024269 6 SRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRV 77 (270)
Q Consensus 6 ~~~l~v~nL~~~~------t~~~l~~~F~~~G~i~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~-~l~v 77 (270)
+++|||+|||..+ |+++|+++|++||.|..|.+. .++.++|||||+|.+.++|+.|+..|||..|+|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999985 4678899999999999999999999999999999 8876
No 106
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=7.1e-20 Score=121.61 Aligned_cols=75 Identities=28% Similarity=0.477 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhc-CCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~g~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|++||.|..|.+..+ +|||||+|.+.++|+.|+..| ||..|+|++|.|++++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 57799999999999999999999999999999999753 799999999999999999988 9999999999999974
No 107
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=5.2e-20 Score=131.65 Aligned_cols=80 Identities=24% Similarity=0.425 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999954 5677999999999999999999999999999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 100 ~~~ 102 (126)
T 3ex7_B 100 FVR 102 (126)
T ss_dssp EES
T ss_pred cCC
Confidence 865
No 108
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=8.1e-20 Score=121.88 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|++ +++..|+|+.|.|++|
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 6789999999999999999999999999999999964 46789999999999999999998 6888999999999875
No 109
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.4e-20 Score=125.11 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+|+++|+++|++||.|..|.+..+ +|||||+|.+.++|++|++.|||..|.|++|.|.++.+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 57789999999999999999999999999999999754 899999999999999999999999999999999999876
No 110
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=7.4e-20 Score=126.39 Aligned_cols=79 Identities=13% Similarity=0.221 Sum_probs=72.2
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCcc-----CCeE
Q 024269 2 SGRFSRTIYV--GNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF-----DGCR 74 (270)
Q Consensus 2 ~~~~~~~l~v--~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~-----~g~~ 74 (270)
+..++++||| +||+.++|+++|+++|++||.|..|.|.. .+|||||+|.+.++|++|++.|||..| .|++
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999999 77999999999999999999999998864 389999999999999999999999988 6899
Q ss_pred EEEEecCCC
Q 024269 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999999865
No 111
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=8.3e-20 Score=125.36 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|++||.|. +....++.++|||||+|.+.++|++|+..|||..|.|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999882 222346788999999999999999999999999999999999999876
No 112
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.82 E-value=7.7e-20 Score=126.81 Aligned_cols=75 Identities=27% Similarity=0.472 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|++||.|..|.+. +|||||+|.+.++|+.|+..|||..|+|+.|.|.++.+.
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 578999999999999999999999999999999998 799999999999999999999999999999999999876
No 113
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=122.36 Aligned_cols=75 Identities=29% Similarity=0.421 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcc--CceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~--G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||.++|+++|+++|++| |.|..|.+. +|||||+|.+.++|+.|+..|||..|.|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999875 7899999999999999999999999999999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 114
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.81 E-value=1.8e-19 Score=131.14 Aligned_cols=81 Identities=31% Similarity=0.581 Sum_probs=75.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|++.|||..|.|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5679999999999999999999999999999999964 3567999999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 120 ~~~~ 123 (139)
T 1u6f_A 120 ASGH 123 (139)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 115
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.81 E-value=1.3e-19 Score=134.45 Aligned_cols=81 Identities=33% Similarity=0.481 Sum_probs=75.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|++.||+..|.|+.|.|+++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47899999999999999999999999999999999653 667899999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 117 ~~~~ 120 (156)
T 1h2v_Z 117 AGFK 120 (156)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 116
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.5e-19 Score=117.44 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=67.9
Q ss_pred CCCce-EEEcCCCCCCCHHH----HHHHHhcc-CceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 4 RFSRT-IYVGNLPSDIREYE----VEDLFYKY-GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~-l~v~nL~~~~t~~~----l~~~F~~~-G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
.|+.| |||+|||..+++++ |+++|++| |+|.+| + .|+|||+|.+.++|+.|++.|||..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 57787 99999999999988 55899999 499998 3 399999999999999999999999999999999
Q ss_pred EecCCCCC
Q 024269 78 ELAHGGSG 85 (270)
Q Consensus 78 ~~~~~~~~ 85 (270)
.+++....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99997743
No 117
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=1.1e-19 Score=125.47 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=75.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhc-cCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCc-cCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYN-FDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~-~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~-~~g~~l~v~~ 79 (270)
.++++|||+|||.++|+++|+++|+. ||.|..|.|.. ++.++|||||+|.+.++|+.|++.|||.. |+|++|.|.+
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~ 86 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSV 86 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEE
Confidence 67899999999999999999999999 99999999955 56789999999999999999999999999 9999999999
Q ss_pred cCCCC
Q 024269 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+.+..
T Consensus 87 a~~~~ 91 (104)
T 2dhg_A 87 AIPKA 91 (104)
T ss_dssp CCCCC
T ss_pred ccCCC
Confidence 97663
No 118
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5e-20 Score=127.40 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=74.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+.. |+..|.|+.|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a 92 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPC 92 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEc
Confidence 6889999999999999999999999999999999965 467789999999999999999997 999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 93 ~~~~ 96 (105)
T 2dh8_A 93 TPRG 96 (105)
T ss_dssp CCSS
T ss_pred cCCC
Confidence 8663
No 119
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=1.9e-19 Score=128.31 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999954 46789999999999999999999999999999999999998
Q ss_pred CCC
Q 024269 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 763
No 120
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.81 E-value=1.9e-19 Score=125.09 Aligned_cols=79 Identities=13% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..+ +..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5789999999999999999999999999999999965 4788999999999999999999965 59999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 866
No 121
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=8e-20 Score=134.93 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=72.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccC--ceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G--~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
..++|||+|||+++|+++|+++|+.|| .|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999954 578899999999999999999999999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8743
No 122
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.7e-20 Score=124.57 Aligned_cols=75 Identities=25% Similarity=0.514 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~-~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. .+|+++|+++|+.||.|..|.+. +|||||+|.+.++|+.|+..|||..|.|++|.|+++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 6889999999998 99999999999999999999996 79999999999999999999999999999999999986
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 83 ~ 83 (96)
T 2kvi_A 83 N 83 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 123
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=8.5e-20 Score=124.31 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
..+++|||+|||.++|+++|+++|+.||.|. +.+.. +.++|||||+|.+.++|+.|++.|||..|+|+.|.|.++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4589999999999999999999999999996 55543 477999999999999999999999999999999999999875
No 124
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.9e-20 Score=125.76 Aligned_cols=76 Identities=26% Similarity=0.467 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
..+++|||+|||.++++++|+++|+.||.|..|.+. .++|||||+|.+.++|+.|+..|||..|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 357899999999999999999999999999999997 4589999999999999999999999999999999999875
No 125
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.81 E-value=4.1e-20 Score=129.82 Aligned_cols=75 Identities=63% Similarity=1.020 Sum_probs=64.9
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCce-----
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR----- 195 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~----- 195 (270)
....++|||.|||..+++++|+++|.+||.|..+.++.+ |||||+|.+.++|++|++.|++..+. ++.
T Consensus 13 ~r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~~~~~~ 85 (115)
T 3beg_B 13 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFR----SHEGETAY 85 (115)
T ss_dssp ----CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCC----CTTSCCCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEEC----CcEeeeEE
Confidence 356789999999999999999999999999999999877 79999999999999999999999998 666
Q ss_pred eeeecCC
Q 024269 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..+.
T Consensus 86 i~v~~~~ 92 (115)
T 3beg_B 86 IRVKVDG 92 (115)
T ss_dssp CEEEECC
T ss_pred EEeccCC
Confidence 5555543
No 126
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1e-19 Score=126.93 Aligned_cols=77 Identities=26% Similarity=0.307 Sum_probs=71.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
+.+++|||+|||+.+|+++|+++|++||.|..|.|.. +++||||+|.+.++|+.|+..|||..|.|++|.|+|+...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4568999999999999999999999999999998864 5899999999999999999999999999999999999764
No 127
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.2e-19 Score=122.66 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=70.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCc-eEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCC-CccCCeEEEEEec
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~-i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~g~~l~v~~~ 80 (270)
..+.++|||+|||.++|+++|+++|++||. |..+.+. ++|||||+|.+.++|++|++.||| ..|+|+.|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 468899999999999999999999999999 6666664 389999999999999999999999 9999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 876
No 128
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=6.1e-20 Score=124.86 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=73.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|+.|+..|||..|+|+.|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 567999999999999999999999999999877 567788999999999999999999999999999999999999866
No 129
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2e-20 Score=124.26 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=72.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
..++++|||+|||+++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|++.|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 46889999999999999999999999999999999964 467899999999999999999999999999999998766
Q ss_pred cC
Q 024269 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 130
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=4e-20 Score=126.24 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=72.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEe---cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
...++|||+|||..+++++|+++|..||.|..+.+. .++.++|||||+|.+.++|++|++.|||..|.|+.|.|+++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999766553 35678999999999999999999999999999999999998
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
..+
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 131
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.80 E-value=5.9e-20 Score=118.98 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=67.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
+|||+|||+++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|++|++ |||..|+|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 589999999999999999999999999999854 46789999999999999999999 9999999999999875
No 132
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=8e-20 Score=131.44 Aligned_cols=81 Identities=16% Similarity=0.255 Sum_probs=74.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEE--EEEec---CCCCCceEEEEEccHHHHHHHHHhcCCC----ccCCe
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGC 73 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~--~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~----~~~g~ 73 (270)
..++++|||+|||+++|+++|+++|+.||.|.. |.|+. ++.++|||||+|.+. +|.+|+..|||. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 357899999999999999999999999999966 88854 578899999999999 999999999999 99999
Q ss_pred EEEEEecCCCC
Q 024269 74 RLRVELAHGGS 84 (270)
Q Consensus 74 ~l~v~~~~~~~ 84 (270)
.|.|.++.+..
T Consensus 99 ~l~V~~a~~~~ 109 (131)
T 2m2b_A 99 TINVEFAKGSK 109 (131)
T ss_dssp CCCCEECCCSC
T ss_pred EEEEEECCCCC
Confidence 99999998763
No 133
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=7.1e-20 Score=133.85 Aligned_cols=82 Identities=24% Similarity=0.373 Sum_probs=75.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEE--------EEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~--------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 75 (270)
.++++|||+|||+.+|+++|+++|+.||.|.. +.+..++.++|||||+|.+.++|..|+..|||..|.|++|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l 122 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPM 122 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEE
Confidence 57899999999999999999999999998865 5556678999999999999999999999999999999999
Q ss_pred EEEecCCCCC
Q 024269 76 RVELAHGGSG 85 (270)
Q Consensus 76 ~v~~~~~~~~ 85 (270)
.|.+++....
T Consensus 123 ~V~~a~~~~~ 132 (143)
T 3egn_A 123 VVQFARSARP 132 (143)
T ss_dssp EEEECCCSCC
T ss_pred EEEECCCCCC
Confidence 9999987643
No 134
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=9.8e-20 Score=125.73 Aligned_cols=80 Identities=31% Similarity=0.594 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|++.|||..|.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3568999999999999999999999999999999954 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 866
No 135
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=7.8e-20 Score=125.18 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec----CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
...++|||+|||.++++++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|++|+ .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5679999999999999999999999999 99999953 5678999999999999999999 7999999999999999
Q ss_pred cCCC
Q 024269 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8865
No 136
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=4.3e-19 Score=131.97 Aligned_cols=81 Identities=33% Similarity=0.501 Sum_probs=75.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..|.|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999954 5789999999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.+..
T Consensus 148 ~~~~ 151 (158)
T 2kn4_A 148 RYGR 151 (158)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 8763
No 137
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=4.3e-20 Score=125.34 Aligned_cols=78 Identities=21% Similarity=0.227 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEe---cCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++|+++|+++|++||.|..+.+. .++.++|||||+|.++++|++|++.|||..|.|+.|.|+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 457899999999999999999999999999876664 34678899999999999999999999999999999999987
Q ss_pred C
Q 024269 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 138
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=123.70 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=71.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|+.|+.|.-+.-..++.++|||||+|.+.++|++|++.|||..|.|+.|.|.++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 67899999999999999999999999875544443456788999999999999999999999999999999999999876
No 139
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=7e-19 Score=121.16 Aligned_cols=78 Identities=18% Similarity=0.319 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+. ++..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 6789999999999999999999999999999999965 36789999999999999999999 477899999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 91 ~~~ 93 (103)
T 2cqg_A 91 NSK 93 (103)
T ss_dssp CTT
T ss_pred CCC
Confidence 876
No 140
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=2.4e-19 Score=125.04 Aligned_cols=74 Identities=30% Similarity=0.625 Sum_probs=70.1
Q ss_pred CCceEEEcCCCCC-CCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 5 FSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nL~~~-~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
++++|||+|||.. +|+++|+++|++||.|..|.+ ++|||||+|.+.++|+.|++.|||..|+|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999999 3899999999999999999999999999999999999865
No 141
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=1.1e-19 Score=131.18 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|.|++|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4578999999999999999999999999999999954 4688999999999999999999999999999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
++.
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 142
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.2e-19 Score=121.91 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEE-EEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|..||.|.. |.|.. ++.++|||||+|.++++|++|+.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 46799999999999999999999999999987 77754 578899999999999999999996 999999999999998
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 754
No 143
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3.6e-19 Score=119.73 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=72.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||.++|+++|+++|+.| .|..|.|.. ++.++|||||+|.+.++|++|+. |||..|+|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 567999999999999999999999999 999999965 46778999999999999999999 99999999999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 65
No 144
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=3.9e-19 Score=129.47 Aligned_cols=77 Identities=32% Similarity=0.556 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.+|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999954 4788999999999999999999999999999999999875
No 145
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=2.3e-19 Score=125.96 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=72.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
++++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+ .|||..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 457999999999999999999999999999999964 3678999999999999999999 799999999999999987
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 146
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.1e-19 Score=124.58 Aligned_cols=78 Identities=18% Similarity=0.344 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC---CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||.++|+++|+++|..||.|..|.|..+ +.++|||||+|.+.++|+.|+.. |+..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4589999999999999999999999999999999653 67899999999999999999996 9999999999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 105 ~~ 106 (116)
T 1x4b_A 105 AR 106 (116)
T ss_dssp SC
T ss_pred CC
Confidence 76
No 147
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=2.5e-19 Score=134.08 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=74.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+.+|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|+.||..|||..|.|++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4567899999999999999999999999999999964 5677999999999999999999999999999999999999
Q ss_pred CCCC
Q 024269 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 8663
No 148
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.6e-20 Score=118.61 Aligned_cols=73 Identities=14% Similarity=0.316 Sum_probs=68.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
++|||+|||.++++++|+++|++||+|..|.+.. ++.++|||||+|.+.++|++|+..++ ..|+|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999954 46789999999999999999999888 9999999999986
No 149
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.79 E-value=5.4e-19 Score=125.96 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=72.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||.++|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|+.|+ .|||..|+|+.|.|.+++
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 458999999999999999999999999999999954 5788999999999999999999 699999999999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 150
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-18 Score=118.15 Aligned_cols=77 Identities=17% Similarity=0.387 Sum_probs=67.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
...++|||+|||.++|+++|+++|+.||.|..|.+.. ...+ ||||+|.+.++|++|+. |||..|+|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~-~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDK-DKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECS-SSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcC-CCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 5678999999999999999999999999999983322 1222 99999999999999999 9999999999999988755
No 151
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=5.8e-20 Score=123.43 Aligned_cols=76 Identities=32% Similarity=0.576 Sum_probs=69.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
++|||+|||.++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.+ |+.|+..|||..|+|++|.|.++.+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999964 3788999999999999 99999999999999999999999866
No 152
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=2.3e-19 Score=119.84 Aligned_cols=77 Identities=32% Similarity=0.372 Sum_probs=71.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
++.+++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.+.++|+.|++.|||..|+|++|.|+++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 4678999999999999999999999999 99999885 5689999999999999999999999999999999999875
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 153
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.5e-18 Score=118.14 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|| ++|+++|+++|++||.|..|.|. .++|||||+|.+.++|++|+..|||..|.|++|.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 57799999996 89999999999999999999985 56899999999999999999999999999999999999876
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=7.6e-20 Score=125.58 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=71.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEE--ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||.++|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|++|++ |||..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 47889999999999999999999999998877222 2357889999999999999999999 99999999999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 155
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=2.6e-18 Score=119.29 Aligned_cols=81 Identities=59% Similarity=0.934 Sum_probs=71.8
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccC-ccCCceeee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN-PWARGRITV 198 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~-~~~~~~i~v 198 (270)
+....++|||+|||..+++++|+++|.+||.|..+.++.+ +||||+|.+.++|++|++.|++..+.+ ...++.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V 87 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRV 87 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEE
Confidence 3456789999999999999999999999999999999887 799999999999999999999999981 111299999
Q ss_pred ecCCC
Q 024269 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
+.+..
T Consensus 88 ~~a~~ 92 (108)
T 1x4c_A 88 KVDGP 92 (108)
T ss_dssp EESSC
T ss_pred EeCCC
Confidence 99865
No 156
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=124.31 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCcc--------CCe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNF--------DGC 73 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~--------~g~ 73 (270)
.+.++|||+|||+++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4679999999999999999999999999999999965 467789999999999999999999999999 578
Q ss_pred EEEEEecCCC
Q 024269 74 RLRVELAHGG 83 (270)
Q Consensus 74 ~l~v~~~~~~ 83 (270)
+|.|.|+.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998854
No 157
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=5.5e-19 Score=130.16 Aligned_cols=78 Identities=42% Similarity=0.733 Sum_probs=73.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||+++|+++|+++|+.||.|..|.+..+ ++|||||+|.+.++|..|+..|||..|.|++|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 6899999999999999999999999999999999999865
No 158
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.6e-19 Score=125.56 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=72.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCce-EEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI-LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i-~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|.. ++.++|||||+|.+.++|++||+. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 577999999999999999999999999999 7788854 578899999999999999999995 999999999999998
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 159
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.78 E-value=2.2e-19 Score=126.57 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCc---eEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~---i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
.+.++|||+|||+++|+++|+++|+.||. |..|.|.. +++++|||||+|.+.++|++|++ ||+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999998 88888854 36789999999999999999999 99999999999999
Q ss_pred ecCCC
Q 024269 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 160
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.78 E-value=3.8e-19 Score=124.85 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=66.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeE-----EEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-----LRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~-----l~v~ 78 (270)
+..++|||+|||+++|+++|+++|++||+|..|.|..+ |||||+|.+.++|++||+.|||..|+|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45789999999999999999999999999999999765 99999999999999999999999999998 7777
Q ss_pred ecCCC
Q 024269 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
.+.+.
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 66543
No 161
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=118.50 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEE-EecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
..+++|||+|||+.+|+++|+++|+.||.|..|. +..+. ..+.|||+|.+.++|+.|+..|||..|+|++|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999994 65442 245599999999999999999999999999999999987
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 162
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=2.2e-19 Score=116.22 Aligned_cols=72 Identities=22% Similarity=0.503 Sum_probs=66.9
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
+|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.+.++|+.|++ +++..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999854 46789999999999999999999 6999999999999875
No 163
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.78 E-value=8.9e-19 Score=132.13 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=74.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||+.+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|++.|||..|+|++|.|+++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4678999999999999999999999999999999955 47789999999999999999999999999999999999997
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 65
No 164
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.9e-19 Score=121.36 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=70.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|+.||.| .|.|.. +++++|||||+|.++++|++||+ +|+..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 567899999999999999999999999954 888854 57789999999999999999996 89999999999999887
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 165
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.77 E-value=3.2e-19 Score=128.22 Aligned_cols=79 Identities=15% Similarity=0.167 Sum_probs=72.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCc---eEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~---i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
.+.++|||+|||+++|+++|+++|+.||. |..|.|..+ ++++|||||+|.+.++|++|++ ||+..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 788888543 6789999999999999999999 99999999999999
Q ss_pred ecCCC
Q 024269 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 121 ~a~~~ 125 (136)
T 2hgl_A 121 KSHRT 125 (136)
T ss_dssp ECCHH
T ss_pred ECChH
Confidence 98643
No 166
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.77 E-value=3.4e-18 Score=125.25 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=69.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCC--eEEEEEecCCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGGS 84 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~~~~~~ 84 (270)
.+|||+||++.+|+++|+++|++||.|..|.|.. ..++|||||+|.+.++|+.|++.|||..|.| +.|+|+|+++..
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4588999999999999999999999999999853 3457899999999999999999999999965 999999998763
No 167
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=120.23 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
+.++|||+|||+++|+++|+++|+.| .|..|.|.. +++++|||||+|.+.++|++||. ||+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 35799999999999999999999999 899999964 47889999999999999999995 999999999999988764
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=2.1e-18 Score=121.86 Aligned_cols=75 Identities=23% Similarity=0.367 Sum_probs=68.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCce-EEEEEccHHHHHHHHHhcCCCccCC--eEEEEEecCCC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~~~~~ 83 (270)
-.|||+||++.+|+++|+++|++||.|..|.+.. +.+|+ |||+|.+.++|+.|++.|||..|.| +.|+|+|++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~--~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT--KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEE--ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEc--CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 3456999999999999999999999999998854 23677 9999999999999999999999988 99999999876
No 169
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=7.7e-19 Score=137.97 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=71.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccC--ceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G--~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
..++|||+|||+++|+++|+++|+.|| .|..|.|+. ++.++|||||+|.+.++|++||+.||+..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999964 568899999999999999999999999999999999999
Q ss_pred cCC
Q 024269 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 170
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.4e-19 Score=125.49 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEE-EE--ecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-EL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~-~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|..||.|..+ .+ ..++.++|||||+|.+.++|++||. |||..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 456899999999999999999999999998763 33 3467889999999999999999999 9999999999999998
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 171
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.76 E-value=2.1e-18 Score=114.97 Aligned_cols=73 Identities=29% Similarity=0.549 Sum_probs=68.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhcc----C-------ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~----G-------~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
++++++|||+|||+++|+++|+++|++| | .|.++.+..+ +|||||+|.+.++|++|+ .|||..|.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 8999998754 899999999999999999 89999999
Q ss_pred CeEEEEEe
Q 024269 72 GCRLRVEL 79 (270)
Q Consensus 72 g~~l~v~~ 79 (270)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 172
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.76 E-value=5.3e-19 Score=122.52 Aligned_cols=79 Identities=14% Similarity=0.108 Sum_probs=72.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCc---eEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~---i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
.+.++|||+|||+++|+++|+++|+.||. |..|.|..+ +.++|||||+|.+.++|++|+. +|+..|+|+.|.|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~ 87 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVY 87 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEE
Confidence 57789999999999999999999999998 889988543 6889999999999999999999 99999999999999
Q ss_pred ecCCC
Q 024269 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 88 ~a~~~ 92 (107)
T 2lmi_A 88 EINNE 92 (107)
T ss_dssp ECCHH
T ss_pred ECCHH
Confidence 98743
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=5.7e-18 Score=119.18 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=68.6
Q ss_pred CCce--EEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCce-EEEEEccHHHHHHHHHhcCCCccCC--eEEEEEe
Q 024269 5 FSRT--IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~~~~--l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~~ 79 (270)
++++ |||+||++.+|+++|+++|++||.|..|.|... .|| |||+|.+.++|..|++.|||..|.| +.|.|++
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 568999999999999999999999999998542 386 9999999999999999999999987 6999999
Q ss_pred cCCCC
Q 024269 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+++..
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98763
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.7e-18 Score=115.62 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=67.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
+.++++|||+|||.++|+++|+++|++||.|..|.|..+ ++|||||+|.+.++|++|+.. ...+.|+.|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 468899999999999999999999999999999999754 789999999999999865431 3556899999999886
Q ss_pred C
Q 024269 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 6
No 175
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.8e-19 Score=127.23 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=70.5
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
...++|||+|||+++|+++|+++|+.|| |+.|.|.. +++++|||||+|.+.++|++|| .+|+..|+|+.|.|.++.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 67888854 4688999999999999999999 599999999999999987
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 176
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=3.4e-18 Score=114.13 Aligned_cols=74 Identities=22% Similarity=0.483 Sum_probs=62.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCc--cCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~--~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|++||.|.+|.|..+ ++|||||+|.+.++|++ +++.. +.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 57899999999999999999999999999999999763 79999999999999984 44544 569999999988
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 65
No 177
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.1e-18 Score=123.09 Aligned_cols=78 Identities=19% Similarity=0.142 Sum_probs=69.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCce----EEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i----~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
.+.++|||+|||+++|+++|+++|+.||.| ..|.|.. +++++|||||+|.+.++|++||+. |+..|+|+.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 567899999999999999999999999975 5777753 578899999999999999999994 999999999999
Q ss_pred EecCC
Q 024269 78 ELAHG 82 (270)
Q Consensus 78 ~~~~~ 82 (270)
..+..
T Consensus 100 ~~a~~ 104 (123)
T 2dha_A 100 FRSTA 104 (123)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 88753
No 178
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=2.2e-18 Score=121.85 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceE--EEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--DIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~--~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|.. +++++|||||+|.++++|++|++ +++..|+|+.|.|..
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 457899999999999999999999999 566 888854 37889999999999999999999 588999999999988
Q ss_pred cCC
Q 024269 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 179
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.75 E-value=9.3e-18 Score=115.22 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=71.5
Q ss_pred CCCCceEEEcCCCC-----CCCHHHHHHHHhccCceEEEEEecC----CCCCceEEEEEccHHHHHHHHHhcCCCccCCe
Q 024269 3 GRFSRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 3 ~~~~~~l~v~nL~~-----~~t~~~l~~~F~~~G~i~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
..++++|+|.||.. +.++++|+++|++||.|.+|.|..+ +.++|+|||+|.++++|.+|++.|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46899999999973 2478999999999999999999653 47899999999999999999999999999999
Q ss_pred EEEEEecCC
Q 024269 74 RLRVELAHG 82 (270)
Q Consensus 74 ~l~v~~~~~ 82 (270)
+|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 180
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=9.5e-20 Score=128.30 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEE--------EEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
.++++|||+|||..+++++|+++|+.||.|.. |.|.. ++.++|||||+|.+.++|++|+..|||..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 67899999999999999999999999999998 77754 46789999999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 024269 73 CRLRVELAHGG 83 (270)
Q Consensus 73 ~~l~v~~~~~~ 83 (270)
++|.|.++.+.
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998865
No 181
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=8.7e-18 Score=118.70 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=70.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|| ++|+++|+++|+.||.|..|.+. .++|||||+|.+.++|+.|++.|||..|.|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 47899999996 69999999999999999999986 56899999999999999999999999999999999999866
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.73 E-value=2.4e-18 Score=118.19 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|+.|+. ++..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4578999999999999999999999999999999965 46778999999999999999999 9999999999999987
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 55
No 183
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.3e-17 Score=123.35 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=73.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..+.+.. ++.++|+|||+|.+.++|.+|+..|||..|+|++|.|.|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5678999999999999999999999999999999964 4678999999999999999999999999999999999998
Q ss_pred C
Q 024269 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 6
No 184
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.7e-17 Score=129.44 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=73.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
..++|||+|||+.+|+++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|++|++.|||..|+|++|.|.++.+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4578999999999999999999999999999999653 457899999999999999999999999999999999999765
No 185
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.72 E-value=1.5e-17 Score=119.91 Aligned_cols=121 Identities=15% Similarity=0.094 Sum_probs=75.1
Q ss_pred ceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024269 46 CYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (270)
-++|++|++...+..|+..++|....|..- +. ....++......
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~-----------------------------------~~~~~~~~~~~~ 48 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MS-----------------------------------YGRPPPDVEGMT 48 (135)
T ss_dssp -------------------------------CC-----------------------------------SCCSCSSGGGCC
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCCC-CC-----------------------------------cCCCCCCCCCCC
Confidence 467888889999999999888755443320 00 011123345568
Q ss_pred eEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|+.|++.|++..+. ++.|.|..+
T Consensus 49 ~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~l~V~~a 124 (135)
T 2lea_A 49 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRVQMA 124 (135)
T ss_dssp CEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS----SSCCEEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 999999999999999999999999999999987653 369999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024269 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
+....
T Consensus 125 ~~~~~ 129 (135)
T 2lea_A 125 RYGRP 129 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75443
No 186
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-17 Score=115.82 Aligned_cols=75 Identities=25% Similarity=0.396 Sum_probs=63.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC------CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
..+++|||+|||+++|+++|+++|++||.|. +.+..+ +.++|||||+|.+.++|++|++.|++ ++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~--~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLE--EDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEE--ETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhh--cCCcEEEe
Confidence 6789999999999999999999999999999 666432 57899999999999999999998842 56666666
Q ss_pred EecC
Q 024269 78 ELAH 81 (270)
Q Consensus 78 ~~~~ 81 (270)
..+.
T Consensus 83 ~~~~ 86 (114)
T 2dnl_A 83 VSSP 86 (114)
T ss_dssp ECCS
T ss_pred ccCC
Confidence 5443
No 187
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.71 E-value=4.3e-17 Score=127.35 Aligned_cols=80 Identities=26% Similarity=0.474 Sum_probs=74.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999965 4677999999999999999999999999999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 876
No 188
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.71 E-value=4e-17 Score=122.03 Aligned_cols=137 Identities=14% Similarity=0.123 Sum_probs=73.9
Q ss_pred EEEccHHHHHHHHHhcCCCccC--CeEEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceE
Q 024269 50 VEFENARDAEDAIRGRDGYNFD--GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRV 127 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~g~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (270)
.+|++.++|+.|+..|++.... |+.+.+....... ...+... ...........+....+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~---------~~~~~~~------~~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA---------IHSYERV------RNEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc---------ccCcccc------ccCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999999886554 5555544322110 0000000 000000011112334567899
Q ss_pred EecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCC
Q 024269 128 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 128 ~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~ 203 (270)
||+|||..+++++|.++|.+||.|..+.++.+..+ |||||+|.+.++|+.|+..|++..+. |+.|.|.++..
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~~ 151 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTIQVDWCFV 151 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEESEE
T ss_pred EEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEEEecC
Confidence 99999999999999999999999999999987544 59999999999999999999999998 99999999864
Q ss_pred CC
Q 024269 204 SP 205 (270)
Q Consensus 204 ~~ 205 (270)
..
T Consensus 152 ~~ 153 (165)
T 1rk8_A 152 KG 153 (165)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 189
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.71 E-value=6.8e-17 Score=110.00 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=70.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
.+++|||+|||..+++++|+++|++||.|..+.++.++.+ |||||+|.+.++|++|++.|+|..+. |+.|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----SKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 4578999999999999999999999999999999987654 59999999999999999999999999 999999
Q ss_pred ecCC
Q 024269 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..++
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 9885
No 190
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.71 E-value=2.1e-16 Score=110.91 Aligned_cols=80 Identities=18% Similarity=0.323 Sum_probs=72.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
....+|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|+.|++.|++..+. |+.|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~l~V 80 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH----GKAIKV 80 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS----SSBCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 3457999999999999999999999999999999998763 269999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 024269 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+....
T Consensus 81 ~~a~~~~ 87 (116)
T 2fy1_A 81 EQAKKPS 87 (116)
T ss_dssp EECCCSS
T ss_pred EECCCCC
Confidence 9987544
No 191
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-16 Score=108.80 Aligned_cols=84 Identities=19% Similarity=0.334 Sum_probs=74.6
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC-CcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
.....+..+|||.|||..+++++|+++|.+||.|..+.+..+.. .+||||+|.+.++|+.|++.|++..+. ++.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 91 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYRL 91 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEE
Confidence 34455678999999999999999999999999999999977654 469999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024269 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+...+
T Consensus 92 ~V~~a~~~~ 100 (109)
T 1x4a_A 92 RVEFPRSGR 100 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEEcccCC
Confidence 999987544
No 192
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.7e-17 Score=114.97 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=68.3
Q ss_pred CceEEEcCC----CCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEcc----HHH----HHHHHH--hcCCC
Q 024269 6 SRTIYVGNL----PSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFEN----ARD----AEDAIR--GRDGY 68 (270)
Q Consensus 6 ~~~l~v~nL----~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~----~~~----a~~A~~--~l~g~ 68 (270)
.+.|||+|| |+.+++++|+++|+.||+|.+|.+.. |+.++|||||+|.+ +++ |..|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 378999999 99999999999999999999999965 57889999999996 434 788888 78999
Q ss_pred ccCCeEEEEEecCCC
Q 024269 69 NFDGCRLRVELAHGG 83 (270)
Q Consensus 69 ~~~g~~l~v~~~~~~ 83 (270)
.|+|++|.|.+-...
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999987644
No 193
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.70 E-value=4e-17 Score=113.01 Aligned_cols=84 Identities=32% Similarity=0.573 Sum_probs=72.6
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhC-CceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
........+|||+|||+.+++++|+++|++|| .|..+.+......|||||+|.+.++|++|++.|++..+. |+.|
T Consensus 22 ~~~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr~i 97 (111)
T 2jvr_A 22 SKLPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR----GSVI 97 (111)
T ss_dssp ---CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET----TEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEE
Confidence 33445568999999999999999999999999 899999875556689999999999999999999999999 9999
Q ss_pred eeecCCCCC
Q 024269 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|+.+...+
T Consensus 98 ~V~~a~~~p 106 (111)
T 2jvr_A 98 TVERDDNPP 106 (111)
T ss_dssp EEEESCC--
T ss_pred EEEECCCCC
Confidence 999987543
No 194
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=7.5e-17 Score=112.55 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=70.3
Q ss_pred CCCceEEEcCCCCCC-----------CHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCC
Q 024269 4 RFSRTIYVGNLPSDI-----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~-----------t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 72 (270)
.++++|+|.||.... ++++|+++|++||.|..|.| .+..++|||||+|.+.++|++|+..|||..|+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 578999999995443 26899999999999999966 555689999999999999999999999999999
Q ss_pred eEEEEEecCCC
Q 024269 73 CRLRVELAHGG 83 (270)
Q Consensus 73 ~~l~v~~~~~~ 83 (270)
++|.|.++.+.
T Consensus 92 r~l~v~~a~~~ 102 (112)
T 2dit_A 92 RQITAQAWDGT 102 (112)
T ss_dssp EECEEEECCSC
T ss_pred cEEEEEEeCCC
Confidence 99999998765
No 195
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.70 E-value=3.3e-17 Score=128.07 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=71.0
Q ss_pred CCCceEEEcCCCCCC---------CHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCcc----
Q 024269 4 RFSRTIYVGNLPSDI---------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---- 70 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~---------t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~---- 70 (270)
.++++|||+||+..+ ++++|+++|++||+|.+|.|.. ++|||||+|.+.++|+.|++.|||..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 578999999999998 7999999999999999999975 389999999999999999999999999
Q ss_pred --------CCeEEEEEecCCC
Q 024269 71 --------DGCRLRVELAHGG 83 (270)
Q Consensus 71 --------~g~~l~v~~~~~~ 83 (270)
.|+.|.|.|+...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999865
No 196
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=3.8e-17 Score=123.45 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=72.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 356899999999999999999999999999887 667889999999999999999999999999999999999999864
No 197
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.70 E-value=5.2e-16 Score=108.87 Aligned_cols=84 Identities=23% Similarity=0.283 Sum_probs=75.2
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
........+|||+|||..+++++|+++|..||.|..+.++.+..+ +||||+|.+.++|+.|++.|++..+. +
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g 94 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----M 94 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----T
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 344456689999999999999999999999999999999987644 59999999999999999999999998 9
Q ss_pred ceeeeecCCCCC
Q 024269 194 GRITVKRYDRSP 205 (270)
Q Consensus 194 ~~i~v~~~~~~~ 205 (270)
+.|.|..+....
T Consensus 95 ~~l~V~~a~~~~ 106 (115)
T 2cpz_A 95 KRLKVQLKRSKN 106 (115)
T ss_dssp EECEEECCCCSC
T ss_pred EEEEEEEcCCCC
Confidence 999999987544
No 198
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.69 E-value=6.7e-17 Score=124.51 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999954 5677999999999999999999999999999999999999
Q ss_pred CCC
Q 024269 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 876
No 199
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=4.3e-17 Score=122.73 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=71.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEec
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~ 80 (270)
..++|||+|||..+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.+|
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 4677899999999999999999999999999999999987
No 200
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.6e-17 Score=122.57 Aligned_cols=78 Identities=22% Similarity=0.472 Sum_probs=72.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
++++|||+|||..+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|++ ++|..|+|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999954 47889999999999999999999 99999999999999998
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 201
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.69 E-value=1.2e-16 Score=114.00 Aligned_cols=82 Identities=17% Similarity=0.279 Sum_probs=73.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|.++|..||.|..+.++.+.. .|+|||+|.+.++|+.|++.|++..+. ++.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 93 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQP 93 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS----SSB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 445578999999999999999999999999999999987753 369999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024269 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..+....
T Consensus 94 l~v~~a~~~~ 103 (126)
T 3ex7_B 94 ISVDWCFVRG 103 (126)
T ss_dssp CEEEESEESS
T ss_pred EEEEEecCCC
Confidence 9999987443
No 202
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1.2e-16 Score=122.93 Aligned_cols=80 Identities=23% Similarity=0.394 Sum_probs=71.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+.. +|..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999965 467899999999999999999994 8999999999999998
Q ss_pred CCCC
Q 024269 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
+...
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7643
No 203
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.4e-16 Score=121.92 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=70.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCCC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~~ 83 (270)
.++|||+|||+++|+++|.++|++||.|..|.|.. ++.++|||||+|.+.++|+.|+..+ +..|+|+.|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 58999999999999999999999999999999965 4678899999999999999999855 56999999999998866
No 204
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.7e-16 Score=118.97 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=71.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCC--eEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g--~~l~v~ 78 (270)
.++++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|+|||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999955 46778999999999999999999999999988 999999
Q ss_pred ec
Q 024269 79 LA 80 (270)
Q Consensus 79 ~~ 80 (270)
+|
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 205
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1.4e-16 Score=120.19 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=70.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCCCccC---CeEEEEEe
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~~l~v~~ 79 (270)
+.++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|++.|||..+. |++|.|.|
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 678999999999999999999999999999999955 4667899999999999999999999998775 49999998
Q ss_pred cC
Q 024269 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 206
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.67 E-value=3.6e-16 Score=101.52 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=68.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
...|+|+||++.+++++|+++|.+||+|..+++.. ..|||||+|.+.++|.+|++.||+..+. ++.|.|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLA----NTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEET----TEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEEEEECC
Confidence 46899999999999999999999999999999876 4589999999999999999999999999 9999999873
No 207
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=9.2e-16 Score=104.18 Aligned_cols=82 Identities=18% Similarity=0.222 Sum_probs=72.7
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
.......+|||+|||..+++++|+++|..||.|. +.++.+...|||||+|.+.++|+.|++.|++..+. |+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG----TDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS----SSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEE
Confidence 3445568999999999999999999999999997 67777777789999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 024269 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+...+
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9887543
No 208
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.67 E-value=2.4e-16 Score=108.19 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=69.6
Q ss_pred CCCCceEEEcCC--CCCC--------CHHHHHHHHhccCceEEEEEecC-----CCCCceEEEEEccHHHHHHHHHhcCC
Q 024269 3 GRFSRTIYVGNL--PSDI--------REYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 3 ~~~~~~l~v~nL--~~~~--------t~~~l~~~F~~~G~i~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
+.|+++|.|.|+ |..+ .+++|+++|++||.|.+|.|..+ +.++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999998 3333 34789999999999999999654 25789999999999999999999999
Q ss_pred CccCCeEEEEEecCC
Q 024269 68 YNFDGCRLRVELAHG 82 (270)
Q Consensus 68 ~~~~g~~l~v~~~~~ 82 (270)
..|+|++|.|.++..
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999999753
No 209
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.8e-15 Score=103.93 Aligned_cols=84 Identities=11% Similarity=0.126 Sum_probs=75.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC--cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
.......+|||+|||..+++++|+++|+.||.|..+.++.+... +||||+|.+.++|+.|++.|++..+. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL----GKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC----CCeE
Confidence 34456789999999999999999999999999999999887544 69999999999999999999999999 9999
Q ss_pred eeecCCCCCC
Q 024269 197 TVKRYDRSPS 206 (270)
Q Consensus 197 ~v~~~~~~~~ 206 (270)
.|..+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9999876443
No 210
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=6.9e-16 Score=104.96 Aligned_cols=77 Identities=10% Similarity=0.096 Sum_probs=69.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCC--ccccCccCCceeeeec
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~--~~~~~~~~~~~i~v~~ 200 (270)
+..+|||+|||+.+++++|+++|++||.|..+.++.+ .|||||+|++.++|+.|++.|++ ..+. |+.|.|.+
T Consensus 15 ~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~----Gr~l~V~~ 88 (105)
T 1sjq_A 15 PSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIYIQF 88 (105)
T ss_dssp CCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEET----TEECCBCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEEEE
Confidence 4579999999999999999999999999999999986 37999999999999999998864 6777 99999999
Q ss_pred CCCCC
Q 024269 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 89 A~~~~ 93 (105)
T 1sjq_A 89 SNHKE 93 (105)
T ss_dssp CSSSS
T ss_pred cCCCC
Confidence 86533
No 211
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=1.6e-15 Score=103.58 Aligned_cols=82 Identities=21% Similarity=0.359 Sum_probs=73.9
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.+..+ |+|||+|.+.++|+.|++.|++..+. ++.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3455689999999999999999999999999999999987733 59999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024269 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+....
T Consensus 89 ~v~~a~~~~ 97 (100)
T 2do4_A 89 KVAISNSGP 97 (100)
T ss_dssp EEEECCCCS
T ss_pred EEEECCCCC
Confidence 999987544
No 212
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.66 E-value=3.9e-15 Score=104.39 Aligned_cols=84 Identities=23% Similarity=0.334 Sum_probs=75.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|..||.|..+.++.+... |||||+|.+.++|+.|++.|++..+. ++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GR 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET----TE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 34456789999999999999999999999999999999987543 59999999999999999999999998 99
Q ss_pred eeeeecCCCCCC
Q 024269 195 RITVKRYDRSPS 206 (270)
Q Consensus 195 ~i~v~~~~~~~~ 206 (270)
.|.|..+.....
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999976544
No 213
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=3.5e-16 Score=117.02 Aligned_cols=76 Identities=30% Similarity=0.576 Sum_probs=69.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---CCCCCceEEEEEccHHHHHHHHHhcCCCccCCeE--EEEEe
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--LRVEL 79 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~--l~v~~ 79 (270)
+.++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+. |.|.|
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999954 4667899999999999999999999999999964 88887
Q ss_pred c
Q 024269 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 214
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1e-15 Score=105.14 Aligned_cols=84 Identities=18% Similarity=0.281 Sum_probs=74.2
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeC--CCCcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~--~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
....+..+|||+|||..+++++|+++|..||.|..+.+..+ ...+||||+|.+.++|+.|++.|++..+. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 85 (103)
T 2d9p_A 10 ITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA----TKPL 85 (103)
T ss_dssp CCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBC
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 34456789999999999999999999999999999999987 22269999999999999999999999998 9999
Q ss_pred eeecCCCCCC
Q 024269 197 TVKRYDRSPS 206 (270)
Q Consensus 197 ~v~~~~~~~~ 206 (270)
.|..+.....
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2d9p_A 86 YVALAQRKEE 95 (103)
T ss_dssp EEEECSSCCC
T ss_pred EEEEeccccc
Confidence 9999875443
No 215
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.66 E-value=2.2e-15 Score=103.91 Aligned_cols=82 Identities=18% Similarity=0.216 Sum_probs=73.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCC---c
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR---G 194 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~---~ 194 (270)
..+..+|||+|||..+++++|.++|+.||.|..+.+..+..+ |||||+|.+.++|+.|++.|++..+. + +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM----PGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC----TTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC----CCCCc
Confidence 345689999999999999999999999999999999987643 69999999999999999999999988 5 8
Q ss_pred eeeeecCCCCCC
Q 024269 195 RITVKRYDRSPS 206 (270)
Q Consensus 195 ~i~v~~~~~~~~ 206 (270)
.|.|..+.....
T Consensus 88 ~l~V~~a~~~~~ 99 (105)
T 2dnh_A 88 SLVVKFADTDKE 99 (105)
T ss_dssp CCEEEESCSSCC
T ss_pred cEEEEECccCcc
Confidence 999999876544
No 216
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=3.3e-15 Score=104.55 Aligned_cols=82 Identities=23% Similarity=0.326 Sum_probs=73.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.+..+ +||||+|.+.++|+.|++.|++..+. ++.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 86 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF----DRPM 86 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC----CCEE
Confidence 3345689999999999999999999999999999999987653 59999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024269 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+....
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2do0_A 87 HVKMDERAL 95 (114)
T ss_dssp EEEECSCCC
T ss_pred EEEEcccCC
Confidence 999986543
No 217
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.65 E-value=5.6e-16 Score=108.60 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=70.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC--cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~--g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.|++..+. |+.|.|..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 358999999999999999999999999999999887654 69999999999999999999999999 999999988
Q ss_pred CCC
Q 024269 202 DRS 204 (270)
Q Consensus 202 ~~~ 204 (270)
...
T Consensus 81 ~~~ 83 (115)
T 4f25_A 81 KSR 83 (115)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 218
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.65 E-value=5.2e-16 Score=126.20 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=70.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC-CeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.+..+. +|||||+|.+.++|.+|+..|||..|. |+.|.|.|++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 467899999999999999999999999999999997542 589999999999999999999999999 9999999986
No 219
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.8e-15 Score=102.99 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=74.5
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC--CcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
....+..+|||+|||..+++++|+++|..||.|..+.++.+.. .++|||+|.+.++|+.|++.|++..+. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3445668999999999999999999999999999999988754 369999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024269 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999987544
No 220
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.65 E-value=9.8e-16 Score=106.24 Aligned_cols=78 Identities=21% Similarity=0.120 Sum_probs=72.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|.+.++|++|++.||+..+. |+.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~----gr~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM----GNIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEE
Confidence 4579999999999999999999999999999999988764 59999999999999999999999999 999999
Q ss_pred ecCCCC
Q 024269 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..+...
T Consensus 81 ~~a~~~ 86 (110)
T 3s8s_A 81 QLDIKG 86 (110)
T ss_dssp EECSTT
T ss_pred EECCCC
Confidence 988643
No 221
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.5e-15 Score=104.36 Aligned_cols=83 Identities=16% Similarity=0.238 Sum_probs=74.8
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.|++..+. ++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HLI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 3456789999999999999999999999999999999987643 59999999999999999999999998 999
Q ss_pred eeeecCCCCCC
Q 024269 196 ITVKRYDRSPS 206 (270)
Q Consensus 196 i~v~~~~~~~~ 206 (270)
|.|..+.....
T Consensus 87 l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 LNVEWAKPSTN 97 (103)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999876543
No 222
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=103.02 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=72.3
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
.......+|||+|||..+++++|+++|+.||.|..+.+..+..+ |+|||+|.+.++|+.|++.|++..+. ++.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY----GRP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CCE
Confidence 34456789999999999999999999999999999999987653 59999999999999999999999999 999
Q ss_pred eeeecCC
Q 024269 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..++
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9998875
No 223
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=4.1e-16 Score=120.15 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC-CeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|+.|| .|..|.+..+ .+|+|||+|.+.++|.+|+..|||..|+ |++|.|.|++
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST--TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC--CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 4589999999999999999999999999 9999999653 3799999999999999999999999999 9999999987
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 224
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=2.1e-15 Score=103.57 Aligned_cols=83 Identities=17% Similarity=0.183 Sum_probs=74.2
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
+...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|+.|++.|++..+. ++
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 83 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD----GR 83 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT----TB
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC----Cc
Confidence 3445668999999999999999999999999999999988754 369999999999999999999999998 99
Q ss_pred eeeeecCCCCC
Q 024269 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|.|..+....
T Consensus 84 ~l~V~~a~~~~ 94 (103)
T 2dnm_A 84 ELRVQVARYGR 94 (103)
T ss_dssp CCEEEECSSCC
T ss_pred EEEEEECCcCC
Confidence 99999987543
No 225
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.9e-15 Score=102.35 Aligned_cols=81 Identities=20% Similarity=0.206 Sum_probs=73.1
Q ss_pred CCcceEEecCCCCCCCHHHHH----HHHHHhCCceEEEEEeCCC-CcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~~~-~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
....+|||+|||..+++++|+ ++|++||.|..+.++.+.. .+||||+|.+.++|++|++.||+..+. |+.|
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~----gr~l 82 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG----SKKI 82 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC----CeEE
Confidence 345799999999999999999 9999999999999987654 379999999999999999999999999 9999
Q ss_pred eeecCCCCCC
Q 024269 197 TVKRYDRSPS 206 (270)
Q Consensus 197 ~v~~~~~~~~ 206 (270)
.|..+.....
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999875443
No 226
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=9.8e-16 Score=120.73 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=71.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC-CeEEEEEecC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.|| .|..|.+... .+|+|||+|.+.++|.+|+..|||..|. |++|.|.|++
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~ 226 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 226 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEec
Confidence 3579999999999999999999999999 9999999542 3799999999999999999999999999 9999999987
Q ss_pred CC
Q 024269 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 227 ~~ 228 (229)
T 2adc_A 227 ST 228 (229)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 227
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.3e-15 Score=102.77 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=71.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|++||.|..+.++.+..+ ++|||+|.+.++|+.|++.|++..+. ++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 87 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF----GRV 87 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET----TEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 3456689999999999999999999999999999999887553 69999999999999999999999999 999
Q ss_pred eeeecCC
Q 024269 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9998764
No 228
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.64 E-value=1e-15 Score=103.04 Aligned_cols=76 Identities=16% Similarity=0.184 Sum_probs=68.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCcc--ccCccCCceeeee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~--~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|.++|++||.|..+.+++.+ |+|||+|++.++|..|++.|++.. +. |+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k--g~AFVef~~~~~A~~Av~~ln~~~~~i~----Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK--RQALVEFEDVLGACNAVNYAADNQIYIA----GHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT--TEEEEEESSHHHHHHHHHHHHHSCEEET----TEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHhcCCCceeC----CcEEEEE
Confidence 456799999999999999999999999999999988643 799999999999999999999876 56 9999999
Q ss_pred cCCC
Q 024269 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+++.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 8864
No 229
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3.1e-15 Score=101.13 Aligned_cols=81 Identities=21% Similarity=0.265 Sum_probs=73.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
....+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |+|||+|.+.++|+.|++.|++..+. ++
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GR 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 34456789999999999999999999999999999999987654 59999999999999999999999999 99
Q ss_pred eeeeecCCC
Q 024269 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.|.|..++.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999998753
No 230
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=101.81 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=73.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|..||.|..+.++.+... |||||+|.+.++|+.|++.|++..+. ++.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 81 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----GRMLH 81 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----SCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 35689999999999999999999999999999999877633 69999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024269 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 82 V~~a~~~~~ 90 (99)
T 1whw_A 82 VLPSTIKKE 90 (99)
T ss_dssp EEECCCCST
T ss_pred EEEcCCCcc
Confidence 999876544
No 231
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=103.22 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=70.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCC
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~ 204 (270)
++|||+|||..+++++|+++|++||.|..+.+..+ ..|+|||+|.+.++|+.|++.|++..+. |+.|.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEEEEccCC
Confidence 37999999999999999999999999999999887 5579999999999999999999999998 999999998765
Q ss_pred C
Q 024269 205 P 205 (270)
Q Consensus 205 ~ 205 (270)
.
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 232
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=4e-15 Score=100.62 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=72.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|++||.|..+.+..+.. .|+|||+|.+.++|+.|++.|++..+. ++.|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA----GRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----SSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 457999999999999999999999999999999998754 369999999999999999999999998 999999
Q ss_pred ecCCCCCC
Q 024269 199 KRYDRSPS 206 (270)
Q Consensus 199 ~~~~~~~~ 206 (270)
..+.....
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99875443
No 233
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.3e-15 Score=102.39 Aligned_cols=80 Identities=25% Similarity=0.367 Sum_probs=72.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.+..+|||.|||..+++++|.++|+.||.|..+.++.+..+ +||||+|.+.++|+.|++.|++..+. ++.|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD----GRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT----SCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 45689999999999999999999999999999999887543 59999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024269 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..+....
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 99986544
No 234
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=4.7e-15 Score=99.19 Aligned_cols=77 Identities=19% Similarity=0.343 Sum_probs=70.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
.+..+|||+|||..+++++|+++|++||.|..+.+.+ +||||+|.+.++|+.|++.|++..+. ++.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDIIK----NYGFVHIEDKTAAEDAIRNLHHYKLH----GVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEET----TEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC----CEEEEEECCHHHHHHHHHHhcCCccC----CcEEEEEEC
Confidence 4568999999999999999999999999999999983 69999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024269 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
.....
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 75443
No 235
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=4e-16 Score=120.59 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=68.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCce--EEEEEecC-CCCCceEEEEEccHHHHHHHHHhcCCCccCCe----EEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI--LDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC----RLR 76 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i--~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~----~l~ 76 (270)
.++++|||+|||+.+|+++|+++|+.||.| ..+.+..+ +..+|+|||+|.+.++|..|+..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 467899999999999999999999999999 88888654 45569999999999999999999999999876 677
Q ss_pred EEec
Q 024269 77 VELA 80 (270)
Q Consensus 77 v~~~ 80 (270)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7765
No 236
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.1e-15 Score=102.04 Aligned_cols=83 Identities=27% Similarity=0.355 Sum_probs=74.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
....+..+|||+|||..+++++|.++|++||.|..+.++.+..+ |||||+|.+.++|+.|++.|++..+. ++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY----GK 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS----SC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC----Ce
Confidence 34456689999999999999999999999999999999887643 59999999999999999999999998 99
Q ss_pred eeeeecCCCCC
Q 024269 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|.|..+....
T Consensus 86 ~l~v~~a~~~~ 96 (105)
T 1x5u_A 86 PIRVNKASAHN 96 (105)
T ss_dssp BCEEEETTTTS
T ss_pred EEEEEECCCCC
Confidence 99999987543
No 237
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.6e-15 Score=105.76 Aligned_cols=80 Identities=10% Similarity=0.089 Sum_probs=70.8
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCC--ccccCccCCceee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~--~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||+.+++++|+++|++||.|..+.++.++ |||||+|++.++|++|++.|++ ..+. |+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k--G~AFVeF~~~e~A~~Ai~~l~~~~~~l~----Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK--NQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG--TEEEEECSCHHHHHHHHHHHHHHCCCBT----TBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC--CEEEEEECCHHHHHHHHHHhccCCceEC----CeEEE
Confidence 44567899999999999999999999999999999998863 7999999999999999999874 5677 99999
Q ss_pred eecCCCCC
Q 024269 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.++....
T Consensus 101 V~~a~~k~ 108 (119)
T 2ad9_A 101 IQFSNHKE 108 (119)
T ss_dssp EEECSSSS
T ss_pred EEEccCCC
Confidence 99986433
No 238
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=4.3e-15 Score=101.70 Aligned_cols=78 Identities=19% Similarity=0.208 Sum_probs=68.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCc--cccCccCCceeeee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT--EFRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~--~~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|+++|++||.|..+.++.+ .|+|||+|++.++|..|++.|++. .+. |+.|.|.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~----Gr~l~V~ 86 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIA----GQQAFFN 86 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSS----SSBCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEEE
Confidence 45679999999999999999999999999999998875 479999999999999999998764 466 9999999
Q ss_pred cCCCCC
Q 024269 200 RYDRSP 205 (270)
Q Consensus 200 ~~~~~~ 205 (270)
++....
T Consensus 87 ~a~~~~ 92 (104)
T 1wex_A 87 YSTSKR 92 (104)
T ss_dssp ECSSSS
T ss_pred EccCcc
Confidence 987533
No 239
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=6.2e-15 Score=102.65 Aligned_cols=83 Identities=11% Similarity=0.172 Sum_probs=74.0
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhC------CccccC
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLD------DTEFRN 189 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~------~~~~~~ 189 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|+.|++.|+ +..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 445678999999999999999999999999999999987754 3699999999999999999999 99998
Q ss_pred ccCCceeeeecCCCCCC
Q 024269 190 PWARGRITVKRYDRSPS 206 (270)
Q Consensus 190 ~~~~~~i~v~~~~~~~~ 206 (270)
++.|.|..+.....
T Consensus 90 ---g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 ---GRQLKVDLAVTRDE 103 (111)
T ss_dssp ---SCEEEEECCCCCCC
T ss_pred ---CEEEEEEECCCCcc
Confidence 99999999875443
No 240
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.63 E-value=9.8e-16 Score=104.17 Aligned_cols=76 Identities=11% Similarity=0.062 Sum_probs=68.9
Q ss_pred CCcceEEecCCCC-CCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCc--cccCccCCceeee
Q 024269 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT--EFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~--~~~~~~~~~~i~v 198 (270)
.+..+|||+|||. .+++++|+++|++||.|..+.++.++ ++|||+|++.++|+.|++.|++. .+. |+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVF----GKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceEC----CcEEEE
Confidence 4568999999999 99999999999999999999998765 69999999999999999999865 477 999999
Q ss_pred ecCCC
Q 024269 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99874
No 241
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.63 E-value=2.1e-15 Score=100.27 Aligned_cols=78 Identities=22% Similarity=0.288 Sum_probs=69.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |+|||+|.+.++|+.|++.|++..+. |+.|.
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQIR 79 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 34679999999999999999999999999999999987543 59999999999999999999999998 99999
Q ss_pred eecCCC
Q 024269 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|..+..
T Consensus 80 v~~a~~ 85 (87)
T 3bs9_A 80 TNWATR 85 (87)
T ss_dssp EEEEC-
T ss_pred EEecCC
Confidence 998764
No 242
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.3e-15 Score=105.06 Aligned_cols=79 Identities=13% Similarity=0.064 Sum_probs=69.3
Q ss_pred CCCCCcceEEecCCCCC-CCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCC--ccccCccCCce
Q 024269 119 ISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGR 195 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~--~~~~~~~~~~~ 195 (270)
....+..+|||+|||.. +++++|+++|++||.|..+.++.. .|||||+|++.++|+.|++.|++ ..+. |+.
T Consensus 20 ~~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~----Gr~ 93 (112)
T 1x4f_A 20 QKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQ----GRC 93 (112)
T ss_dssp CSSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSS----SSC
T ss_pred ccCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEE
Confidence 34556789999999998 999999999999999999999864 37999999999999999998864 4577 999
Q ss_pred eeeecCCC
Q 024269 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|.|.++..
T Consensus 94 l~V~~a~~ 101 (112)
T 1x4f_A 94 VKVDLSEK 101 (112)
T ss_dssp CEEEEECS
T ss_pred EEEEECcc
Confidence 99999864
No 243
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=6.3e-15 Score=101.94 Aligned_cols=84 Identities=18% Similarity=0.391 Sum_probs=74.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeC-CC----CcEEEEEecChhhHHHHHHHh-CCccccCccC
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-SE----GTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWA 192 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~-~~----~g~~~v~f~~~~~a~~a~~~l-~~~~~~~~~~ 192 (270)
.......+|||+|||..+++++|+++|..||.|..+.++.+ .. .|||||+|.+.++|+.|++.| ++..+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~---- 85 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY---- 85 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS----
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC----
Confidence 34456789999999999999999999999999999999877 22 369999999999999999999 999998
Q ss_pred CceeeeecCCCCCC
Q 024269 193 RGRITVKRYDRSPS 206 (270)
Q Consensus 193 ~~~i~v~~~~~~~~ 206 (270)
++.|.|..+.....
T Consensus 86 g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 GRRLVLEWADSEVT 99 (107)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CCEEEEEeCCCCCC
Confidence 99999999876543
No 244
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.62 E-value=5.4e-15 Score=102.09 Aligned_cols=82 Identities=20% Similarity=0.248 Sum_probs=73.0
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccc---cCccC
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEF---RNPWA 192 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~---~~~~~ 192 (270)
......+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|+.|++.|++..+ .
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~---- 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM---- 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC----
Confidence 345668999999999999999999999999999999988754 36999999999999999999999887 5
Q ss_pred CceeeeecCCCCC
Q 024269 193 RGRITVKRYDRSP 205 (270)
Q Consensus 193 ~~~i~v~~~~~~~ 205 (270)
++.|.|..+....
T Consensus 85 g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 85 NRPIQVKPADSES 97 (106)
T ss_dssp SSCCEEEECCCCS
T ss_pred CceEEEEECCccc
Confidence 8999999987544
No 245
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.62 E-value=1.8e-15 Score=100.81 Aligned_cols=77 Identities=14% Similarity=0.302 Sum_probs=70.7
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC-----CCcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
..+|||+|||..+++++|.++|+.||.|..+.++.+. ..|+|||+|.+.++|+.|++.|++..+. |+.|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeEEEE
Confidence 4789999999999999999999999999999998765 4479999999999999999999999999 999999
Q ss_pred ecCCCC
Q 024269 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..+...
T Consensus 80 ~~a~~~ 85 (88)
T 4a8x_A 80 TAVLAP 85 (88)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 988643
No 246
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=7.8e-15 Score=99.32 Aligned_cols=76 Identities=21% Similarity=0.299 Sum_probs=65.3
Q ss_pred CCceEEEcCCC-------CCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 5 FSRTIYVGNLP-------SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 5 ~~~~l~v~nL~-------~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
....|.|.... ..+|+++|+++|++||.|.+|.|. +.++|||||+|.+.++|+.|++.+++ +.|++|.|
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V 84 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKI 84 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEE
Confidence 45677777655 458999999999999999999997 47799999999999999999997655 67999999
Q ss_pred EecCCCC
Q 024269 78 ELAHGGS 84 (270)
Q Consensus 78 ~~~~~~~ 84 (270)
.|+.+..
T Consensus 85 ~~a~~~~ 91 (100)
T 2d9o_A 85 SWLEGQP 91 (100)
T ss_dssp ECSSCCC
T ss_pred EEccCCC
Confidence 9988663
No 247
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.1e-15 Score=102.91 Aligned_cols=83 Identities=16% Similarity=0.392 Sum_probs=73.5
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC-----CcEEEEEecChhhHHHHHHHhCCccccCccC
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~ 192 (270)
..+..+..+|||+|||..+++++|+++|..|| |..+.++.+.. .|||||+|.+.++|++|+ .|++..+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~---- 82 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG---- 82 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET----
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC----
Confidence 34445678999999999999999999999999 99999988754 369999999999999999 99999998
Q ss_pred CceeeeecCCCCCC
Q 024269 193 RGRITVKRYDRSPS 206 (270)
Q Consensus 193 ~~~i~v~~~~~~~~ 206 (270)
++.|.|..+.....
T Consensus 83 g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 83 NKRIRVDVADQAQD 96 (104)
T ss_dssp TEECEEEECCCCCC
T ss_pred CcEEEEEEccCCCC
Confidence 99999999876544
No 248
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.2e-15 Score=99.46 Aligned_cols=77 Identities=23% Similarity=0.419 Sum_probs=70.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|++||.|..+.+..+ ||||+|.+.++|+.|++.|++..+. ++.|.|..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVK----GKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 45679999999999999999999999999999999864 9999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024269 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
.....
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 249
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.62 E-value=2.9e-15 Score=106.95 Aligned_cols=82 Identities=21% Similarity=0.236 Sum_probs=73.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|++|++.|++..+. |+.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 345668999999999999999999999999999999987753 369999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024269 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..+...+
T Consensus 118 l~V~~a~~~~ 127 (129)
T 2kxn_B 118 IRVDFSITKR 127 (129)
T ss_dssp CEESCCSSSS
T ss_pred EEEEEecCCC
Confidence 9999886543
No 250
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.62 E-value=6.1e-15 Score=99.07 Aligned_cols=81 Identities=25% Similarity=0.475 Sum_probs=72.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC--CcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+.. .|+|||+|.+.++|+.|++.|++..+. ++.|.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v 80 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS----GREIDV 80 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT----TBCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEE
Confidence 34568999999999999999999999999999999987532 269999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 024269 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..++...
T Consensus 81 ~~a~~~~ 87 (92)
T 2dgv_A 81 RIDRNAS 87 (92)
T ss_dssp EECSCCS
T ss_pred EEcCCCC
Confidence 9886543
No 251
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=9.9e-15 Score=100.39 Aligned_cols=81 Identities=19% Similarity=0.199 Sum_probs=72.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHH-hCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCcc-ccCccCCce
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTE-FRNPWARGR 195 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~-~~~~~~~~~ 195 (270)
..+..+|||+|||..+++++|.++|.. ||.|..+.++.+..+ |||||+|.+.++|+.|++.|++.. +. ++.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~----g~~ 81 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG----SKP 81 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS----SSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC----CEe
Confidence 345689999999999999999999999 999999999987632 599999999999999999999999 88 999
Q ss_pred eeeecCCCCC
Q 024269 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..+....
T Consensus 82 l~v~~a~~~~ 91 (104)
T 2dhg_A 82 VRLSVAIPKA 91 (104)
T ss_dssp CCCCBCCCCC
T ss_pred EEEEEccCCC
Confidence 9999986544
No 252
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=3.7e-15 Score=101.38 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=69.7
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhC--CccccCccCCceee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~--~~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||..+++++|+++|++||.|..+.++.+ .|+|||+|++.++|+.|++.|+ +..+. |+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR----NQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET----TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CcEEE
Confidence 3456689999999999999999999999999999998876 4799999999999999999874 56677 99999
Q ss_pred eecCCCC
Q 024269 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|.++...
T Consensus 85 V~~a~~~ 91 (101)
T 2cq1_A 85 IQYSNHK 91 (101)
T ss_dssp EEECSCS
T ss_pred EEEcCcc
Confidence 9998743
No 253
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.62 E-value=2.6e-15 Score=99.35 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=69.8
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |+|||+|.+.++|+.|++.|++..+. |+.|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 35689999999999999999999999999999999776433 59999999999999999999999998 99999
Q ss_pred eecCC
Q 024269 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98763
No 254
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=7.2e-15 Score=100.12 Aligned_cols=81 Identities=19% Similarity=0.366 Sum_probs=72.5
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|+.|++ |++..+. ++.|
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~l 81 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM----GKKV 81 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS----SCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC----CeEE
Confidence 34568999999999999999999999999999999988754 3699999999999999999 9999998 9999
Q ss_pred eeecCCCCCC
Q 024269 197 TVKRYDRSPS 206 (270)
Q Consensus 197 ~v~~~~~~~~ 206 (270)
.|..+.....
T Consensus 82 ~V~~a~~~~~ 91 (99)
T 2dgs_A 82 EVKRAEPRDS 91 (99)
T ss_dssp EEEECCCCCC
T ss_pred EEEECCCCcc
Confidence 9999875443
No 255
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.62 E-value=1e-14 Score=100.16 Aligned_cols=76 Identities=11% Similarity=0.202 Sum_probs=69.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
+..+|||+|||..+++++|+++|.+||.|..+.+++ +||||+|.+.++|+.|++.|++..+. ++.|.|..+.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLE----GENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccC----CCEEEEEEcC
Confidence 457999999999999999999999999999999885 49999999999999999999999998 9999999997
Q ss_pred CCCC
Q 024269 203 RSPS 206 (270)
Q Consensus 203 ~~~~ 206 (270)
....
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 5443
No 256
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.62 E-value=1.4e-14 Score=100.66 Aligned_cols=76 Identities=17% Similarity=0.251 Sum_probs=69.1
Q ss_pred CCCcceEEecCCCCC-CCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 121 RHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
.....+|||+|||.. +++++|+++|.+||.|..+.+. .+||||+|.+.++|+.|++.|++..+. ++.|.|.
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~ 95 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH----KGYAFVQYSNERHARAAVLGENGRVLA----GQTLDIN 95 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE----TTEEEEECSSSHHHHHHHHHHTTCEET----TEECCEE
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEE
Confidence 344579999999999 9999999999999999999982 369999999999999999999999998 9999999
Q ss_pred cCCCC
Q 024269 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
.+...
T Consensus 96 ~a~~~ 100 (110)
T 1wf1_A 96 MAGEP 100 (110)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 98643
No 257
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.9e-15 Score=101.50 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=72.1
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEE-EEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
+..+|||+|||..+++++|.++|+.||.|..+ .++.+... |||||+|.+.++|+.|++.|++..+. ++.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----NRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 45799999999999999999999999999999 88876432 69999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024269 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999875543
No 258
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-14 Score=98.93 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=71.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
.+..+|||+|||..+++++|+++|++||.|..+.+..+ .+||||+|.+.++|++|++.|++..+.+ .++.|.|..+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~--~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGG--PDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSS--SSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCC--CCcEEEEEEC
Confidence 45579999999999999999999999999999999876 4699999999999999999999998862 2688999988
Q ss_pred CCCCC
Q 024269 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
...+.
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76443
No 259
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.61 E-value=6.9e-15 Score=100.22 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=72.6
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceE--------EEEEeCCCC----cEEEEEecChhhHHHHHHHhCCc
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~ 185 (270)
..+.....+|||+|||..+++++|+++|++||.|.. +.++.+..+ |+|||+|.+.++|+.|++.|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 345556789999999999999999999999999999 999887653 59999999999999999999999
Q ss_pred cccCccCCceeeeecCC
Q 024269 186 EFRNPWARGRITVKRYD 202 (270)
Q Consensus 186 ~~~~~~~~~~i~v~~~~ 202 (270)
.+. |+.|.|+.++
T Consensus 87 ~~~----g~~l~V~~A~ 99 (99)
T 2la6_A 87 EFS----GNPIKVSFAT 99 (99)
T ss_dssp BSS----SSBCEEEECC
T ss_pred EeC----CcEEEEEecC
Confidence 998 9999998763
No 260
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=5.6e-15 Score=100.10 Aligned_cols=81 Identities=21% Similarity=0.329 Sum_probs=73.3
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEE-EEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~-~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
......+|||+|||..+++++|+++|..||.|..+ .++.+...+.|||+|.+.++|+.|++.|++..+. |+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE----NFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEE
Confidence 33456899999999999999999999999999999 5888877778999999999999999999999998 999999
Q ss_pred ecCCCC
Q 024269 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..+...
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 988643
No 261
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=6.8e-15 Score=100.24 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=72.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
..+..+|||+|||..+++++|+++|.+||.|..+.+..+ .+||||+|.+.++|++|++.|++..+. ++.|.|..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLR----GKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBT----TBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeC----CceEEEEE
Confidence 345679999999999999999999999999999999865 479999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024269 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 87544
No 262
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.3e-14 Score=98.81 Aligned_cols=78 Identities=23% Similarity=0.234 Sum_probs=70.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHh--CCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||..+++++|+++|.+| |.|..+.+.+ +||||+|.+.++|+.|+..|++..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLD----GSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEET----TEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 34456899999999999999999999999 8999888764 59999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024269 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..+....
T Consensus 83 v~~a~~~~ 90 (99)
T 2cpd_A 83 VTLAKPVD 90 (99)
T ss_dssp EECCCCCC
T ss_pred EEECCCCC
Confidence 99986543
No 263
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=7.8e-15 Score=98.52 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.9
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.+.++ +|||+|.+.++|+.|++.|++..+. ++.|.|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ----GKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeC----CcEEEEEE
Confidence 445689999999999999999999999999999999864 9999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024269 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 97544
No 264
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=4.4e-15 Score=100.99 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=71.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC-------CcEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~-------~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
+..+|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|+.|++.|++..+. ++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD----GHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 457999999999999999999999999999999987654 269999999999999999999999999 999
Q ss_pred eeeecCCCCC
Q 024269 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..+....
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999987543
No 265
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.7e-15 Score=102.19 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=73.0
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|+.|++.|++..+. ++.|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 4568999999999999999999999999999999987643 369999999999999999999999999 99999
Q ss_pred eecCCCCCC
Q 024269 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999875443
No 266
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=9.5e-15 Score=101.35 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=72.6
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|..||.|..+.++.+ .|||||+|.+.++|+.|+..|++..+. |+.|.|..+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIE----GHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEET----TEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEEC----CcEEEEEec
Confidence 45679999999999999999999999999999999887 479999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024269 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
.....
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 76543
No 267
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=5.3e-15 Score=97.85 Aligned_cols=77 Identities=17% Similarity=0.247 Sum_probs=69.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHh-CCccccCccCCceeee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWARGRITV 198 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l-~~~~~~~~~~~~~i~v 198 (270)
...+..+|||+|||..+++++|+++|++||.|..+.+..+. |+|||+|.+.++|+.|++.| ++..+. |+.|.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k--g~afV~f~~~~~A~~a~~~l~~~~~~~----g~~l~v 81 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ--QCAFIQFATRQAAEVAAEKSFNKLIVN----GRRLNV 81 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHTTTTTCEET----TEECCE
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC--CEEEEEECCHHHHHHHHHHhcCCeeEC----CCEEEE
Confidence 34556899999999999999999999999999999998753 79999999999999999999 999998 899998
Q ss_pred ecCC
Q 024269 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
+.++
T Consensus 82 ~~ak 85 (85)
T 2ytc_A 82 KWGR 85 (85)
T ss_dssp EECC
T ss_pred EecC
Confidence 8763
No 268
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.61 E-value=1e-14 Score=100.17 Aligned_cols=82 Identities=15% Similarity=0.269 Sum_probs=72.8
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
..+..+..+|||+|||..+++++|+++|..|| |..+.++.+..+ |||||+|.+.++|+.|+ .|++..+. +
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g 82 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG----D 82 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET----T
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC----C
Confidence 34445678999999999999999999999997 999999988653 59999999999999999 89999998 9
Q ss_pred ceeeeecCCCCC
Q 024269 194 GRITVKRYDRSP 205 (270)
Q Consensus 194 ~~i~v~~~~~~~ 205 (270)
+.|.|..+....
T Consensus 83 ~~l~V~~a~~~~ 94 (103)
T 2dng_A 83 RSLRVDIAEGRK 94 (103)
T ss_dssp EECEEEECCCCC
T ss_pred eEEEEEEecCCC
Confidence 999999987544
No 269
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.61 E-value=1.1e-15 Score=102.30 Aligned_cols=77 Identities=16% Similarity=0.325 Sum_probs=67.8
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhC-CceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhC-CccccCccCCceeee
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLD-DTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g-~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~-~~~~~~~~~~~~i~v 198 (270)
.+|||+|||..+++++|+++|++|| .|..+.++.++.+ |||||+|.+.++|++|++.++ +..+. |+.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEEEE
Confidence 5899999999999999999999999 7999998876543 699999999999999999875 55677 999999
Q ss_pred ecCCCCC
Q 024269 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
.++...+
T Consensus 78 ~~a~~~~ 84 (91)
T 2lxi_A 78 HYSDPKP 84 (91)
T ss_dssp ECCCSCC
T ss_pred EEcCCCC
Confidence 9986543
No 270
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.60 E-value=2.2e-14 Score=99.17 Aligned_cols=83 Identities=19% Similarity=0.245 Sum_probs=74.2
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
.....+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.|++..+. |
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~----g 95 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA----G 95 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS----S
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----C
Confidence 334456689999999999999999999999999999999887554 59999999999999999999999998 9
Q ss_pred ceeeeecCCCC
Q 024269 194 GRITVKRYDRS 204 (270)
Q Consensus 194 ~~i~v~~~~~~ 204 (270)
+.|.|..+...
T Consensus 96 ~~l~V~~a~~k 106 (108)
T 2jrs_A 96 RPMKVGHVTER 106 (108)
T ss_dssp SCCEEECSCSS
T ss_pred EEEEEEEcccC
Confidence 99999988653
No 271
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.4e-14 Score=99.86 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=72.8
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|+.|++. ++..+. ++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD----GRN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC----CEE
Confidence 4456789999999999999999999999999999999988654 5999999999999999999 999998 999
Q ss_pred eeeecCCCCC
Q 024269 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..+....
T Consensus 87 l~V~~a~~~~ 96 (105)
T 2dh8_A 87 IDPKPCTPRG 96 (105)
T ss_dssp EBCCCSCCSS
T ss_pred EEEEEccCCC
Confidence 9999887443
No 272
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.60 E-value=6.7e-15 Score=96.86 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=70.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|.++|+.||.|..+.++.+..+ |+|||+|.+.++|+.|++.|++..+. |+.|.|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEEEe
Confidence 58999999999999999999999999999999887543 59999999999999999999999998 99999998
Q ss_pred CCCC
Q 024269 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
+...
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8653
No 273
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.60 E-value=2.3e-14 Score=103.90 Aligned_cols=84 Identities=17% Similarity=0.236 Sum_probs=75.3
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|.++|+.||.|..+.++.+..+ |||||+|.+.++|++|++.|++..+. ++
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL----NK 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----SC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----Ce
Confidence 34456689999999999999999999999999999999988653 59999999999999999999999999 99
Q ss_pred eeeeecCCCCCC
Q 024269 195 RITVKRYDRSPS 206 (270)
Q Consensus 195 ~i~v~~~~~~~~ 206 (270)
.|.|..+.....
T Consensus 113 ~l~v~~a~~~~~ 124 (139)
T 1u6f_A 113 RLKVALAASGHQ 124 (139)
T ss_dssp EEEEEESSCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999875443
No 274
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=4.8e-15 Score=102.51 Aligned_cols=79 Identities=16% Similarity=0.257 Sum_probs=71.2
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
......+|||+|||..+++++|+++|++||.|..+.+. .|||||+|.+.++|+.|++.|++..+. |+.|.|.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 98 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA----NQPLEVV 98 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEE
Confidence 34556899999999999999999999999999999998 479999999999999999999999998 9999999
Q ss_pred cCCCCCC
Q 024269 200 RYDRSPS 206 (270)
Q Consensus 200 ~~~~~~~ 206 (270)
.+.....
T Consensus 99 ~a~~~~~ 105 (108)
T 2jvo_A 99 YSKLPAK 105 (108)
T ss_dssp SCSCCC-
T ss_pred EecCCCC
Confidence 9876543
No 275
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.60 E-value=4.5e-15 Score=100.53 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=70.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|.++|+.||.|..+.+..+.. .|||||+|.+.++|+.|++.|++..+. |+.|.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----SRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEE
Confidence 46899999999999999999999999999999988754 369999999999999999999999999 9999999
Q ss_pred cCCCC
Q 024269 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
.+...
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 98754
No 276
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=99.31 Aligned_cols=79 Identities=9% Similarity=0.131 Sum_probs=71.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCce-EEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCce-
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVC-FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR- 195 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~-~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~- 195 (270)
.+..+|||+|||..+++++|+++|++||.|. .+.++.++.+ |||||+|.+.++|+.|++.|++..+. ++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP----GATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES----SCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC----CCCc
Confidence 4568999999999999999999999999999 9999988644 59999999999999999999999998 777
Q ss_pred ---eeeecCCCC
Q 024269 196 ---ITVKRYDRS 204 (270)
Q Consensus 196 ---i~v~~~~~~ 204 (270)
|.|.++...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 899988644
No 277
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=8.1e-15 Score=101.19 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=72.4
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|.++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.|++..+. |+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC----CcEE
Confidence 445689999999999999999999999999999999987654 69999999999999999999999998 9999
Q ss_pred eeecCCC
Q 024269 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 9998764
No 278
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.60 E-value=2e-15 Score=105.58 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=68.6
Q ss_pred CCCceEEEcCCCCC-----CCHHHHHHHHhccCceEEEEEecC-------CCCCceEEEEEccHHHHHHHHHhcCCCccC
Q 024269 4 RFSRTIYVGNLPSD-----IREYEVEDLFYKYGRILDIELKIP-------PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~~~~l~v~nL~~~-----~t~~~l~~~F~~~G~i~~~~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
.++++|+|.|+-.. -.++||+++|++||+|.+|.|..+ +.++|+|||+|.++++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 48999999999432 246899999999999999999543 245699999999999999999999999999
Q ss_pred CeEEEEEecCC
Q 024269 72 GCRLRVELAHG 82 (270)
Q Consensus 72 g~~l~v~~~~~ 82 (270)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999753
No 279
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.60 E-value=2.9e-15 Score=123.27 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=67.7
Q ss_pred CCCCCceEEEcC--CCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccC---Ce--E
Q 024269 2 SGRFSRTIYVGN--LPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GC--R 74 (270)
Q Consensus 2 ~~~~~~~l~v~n--L~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~---g~--~ 74 (270)
++.++.+|||+| |+..+|+++|+++|++||+|..|.+.. ++|||||+|.+.++|++|++.|||..+. |+ +
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 457999999999 578999999999999999999987753 5899999999999999999999998873 44 6
Q ss_pred EEEEecC
Q 024269 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 8888875
No 280
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.59 E-value=6.6e-15 Score=101.83 Aligned_cols=79 Identities=15% Similarity=0.205 Sum_probs=71.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.+..+ |+|||+|.+.++|++|++.|++..+. ++.|
T Consensus 25 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 100 (107)
T 3ulh_A 25 GVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD----GRPM 100 (107)
T ss_dssp CCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 3456789999999999999999999999999999999987633 59999999999999999999999998 9999
Q ss_pred eeecCC
Q 024269 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 101 ~V~~a~ 106 (107)
T 3ulh_A 101 NIQLVT 106 (107)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 998764
No 281
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.2e-15 Score=104.06 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=73.2
Q ss_pred CCCcceEEecCCCCCCCHHHHH---HHHHHhCCceEEEEEeCCCC-------cEEEEEecChhhHHHHHHHhCCccccCc
Q 024269 121 RHSEYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~---~~f~~~g~i~~~~~~~~~~~-------g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 190 (270)
.....+|||+|||..+++++|. ++|.+||.|..+.++.+... |||||+|.+.++|++|++.|++..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-- 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--
Confidence 3456799999999999999999 99999999999999877542 69999999999999999999999999
Q ss_pred cCCceeeeecCCCCC
Q 024269 191 WARGRITVKRYDRSP 205 (270)
Q Consensus 191 ~~~~~i~v~~~~~~~ 205 (270)
|+.|.|..+....
T Consensus 90 --gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 --GRTLKASLGTTKY 102 (111)
T ss_dssp --TEEEEEESCCCCS
T ss_pred --CEEEEEEeccccc
Confidence 9999999987544
No 282
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.59 E-value=2.2e-15 Score=101.35 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=68.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCC--ceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCcc----ccCcc
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTE----FRNPW 191 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~--i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~----~~~~~ 191 (270)
..-.+|||+|||+.+|+++|+++|++||. +..+.++.++.+ |||||+|.+.++|++|++.|++.. ++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~--- 83 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKID--- 83 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEET---
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceEC---
Confidence 44579999999999999999999999995 678888887653 699999999999999999999975 55
Q ss_pred CCceeeeecCCC
Q 024269 192 ARGRITVKRYDR 203 (270)
Q Consensus 192 ~~~~i~v~~~~~ 203 (270)
|+.|.|++++.
T Consensus 84 -Gr~i~V~~Aks 94 (95)
T 2lkz_A 84 -GKTIGVDFAKS 94 (95)
T ss_dssp -TEEEEEEECCC
T ss_pred -CEEEEEEEccC
Confidence 99999998864
No 283
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.6e-14 Score=100.16 Aligned_cols=82 Identities=7% Similarity=0.046 Sum_probs=72.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCc----eEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|.++|..||.| ..+.+......|||||+|.+.++|+.|++.|++..+. ++.|
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l 97 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY----GKIL 97 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS----SCBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEE
Confidence 3456899999999999999999999999998 6777776666689999999999999999999999998 9999
Q ss_pred eeecCCCCCC
Q 024269 197 TVKRYDRSPS 206 (270)
Q Consensus 197 ~v~~~~~~~~ 206 (270)
.|..+.....
T Consensus 98 ~v~~a~~~~~ 107 (115)
T 2cpx_A 98 VIEFGKNKKQ 107 (115)
T ss_dssp EEEECCCCSC
T ss_pred EEEEccCCCC
Confidence 9999976543
No 284
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.1e-14 Score=101.76 Aligned_cols=83 Identities=24% Similarity=0.419 Sum_probs=73.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCce--------EEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccc
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--------FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--------~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~ 187 (270)
......+|||+|||..+++++|+++|..||.|. .+.++.+..+ |||||+|.+.++|+.|++.|++..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 345678999999999999999999999999998 6888877443 6999999999999999999999999
Q ss_pred cCccCCceeeeecCCCCCC
Q 024269 188 RNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 188 ~~~~~~~~i~v~~~~~~~~ 206 (270)
. ++.|.|..+.....
T Consensus 91 ~----g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 91 Q----GSKLKVSLARKKPP 105 (113)
T ss_dssp T----TEECEEECSSCCCC
T ss_pred C----CCEEEEEECCCCCC
Confidence 9 99999999876443
No 285
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.59 E-value=1.1e-14 Score=106.69 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=71.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+||++.+++++|.++|++||.|..+.+......++|||+|.+.++|+.|++.|+|..+.+ .++.|+|+++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g--~g~~L~V~~A 121 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDFS 121 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS--SCSCEEEEEC
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC--CCcEEEEEEe
Confidence 34567999999999999999999999999999999876666799999999999999999999999961 1489999998
Q ss_pred CCC
Q 024269 202 DRS 204 (270)
Q Consensus 202 ~~~ 204 (270)
+..
T Consensus 122 k~~ 124 (164)
T 1sjr_A 122 KLT 124 (164)
T ss_dssp SSS
T ss_pred cCC
Confidence 753
No 286
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.59 E-value=1.6e-14 Score=101.75 Aligned_cols=80 Identities=23% Similarity=0.355 Sum_probs=71.4
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|.+||.|..+.++.+.. .|||||+|.+.++|+.|++.|++..+. ++
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 110 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG----TK 110 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET----TE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC----CE
Confidence 3445678999999999999999999999999999999987754 369999999999999999999999998 99
Q ss_pred eeeeecCC
Q 024269 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|+.++
T Consensus 111 ~l~V~~ak 118 (118)
T 2khc_A 111 RLKVQLKK 118 (118)
T ss_dssp ECCEEEC-
T ss_pred EEEEEecC
Confidence 99998763
No 287
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.8e-14 Score=101.13 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=71.7
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
....+..+|||.|||..+++++|+++|..||.|..+.++.+..+ +||||+|.+.++|++|++.+++ .+. ++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~----g~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID----GR 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET----TE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC----CE
Confidence 34456789999999999999999999999999999999887543 6999999999999999999998 787 99
Q ss_pred eeeeecCCC
Q 024269 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.|.|..+..
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 999999864
No 288
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.59 E-value=5.5e-16 Score=106.28 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=58.8
Q ss_pred cCCCCCCCHHHHHHHH------------hccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEE
Q 024269 12 GNLPSDIREYEVEDLF------------YKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 12 ~nL~~~~t~~~l~~~F------------~~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 77 (270)
.|||..+++++|.+.| ++||.|..|.|..+ +.++|||||+|.++++|++|+..|||..|+|++|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 4444556677666555 99999999999653 578999999999999999999999999999999999
Q ss_pred Eec
Q 024269 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
.++
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 289
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.59 E-value=1.2e-14 Score=107.57 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=72.9
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.+..+|||.|||..+++++|+++|+.||.|..|.++.+..+ +||||+|.+.++|++|++.|++..+. ++.|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD----DRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 45689999999999999999999999999999999988654 59999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024269 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|+.+...
T Consensus 113 V~~a~~~ 119 (156)
T 1h2v_Z 113 TDWDAGF 119 (156)
T ss_dssp EEEESCC
T ss_pred EEECCCC
Confidence 9999753
No 290
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=5.9e-15 Score=102.31 Aligned_cols=81 Identities=21% Similarity=0.272 Sum_probs=72.9
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC--CcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~--~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
.......+|||+|||..+++++|+++|++||.|..+.+..+.. .|||||+|.+.++|+.|++.|++..+. |+.|
T Consensus 24 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 99 (109)
T 2err_A 24 ENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKI 99 (109)
T ss_dssp SCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET----TEEC
T ss_pred cCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC----CEEE
Confidence 3445668999999999999999999999999999999987643 379999999999999999999999999 9999
Q ss_pred eeecCCC
Q 024269 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 100 ~V~~a~~ 106 (109)
T 2err_A 100 EVNNATA 106 (109)
T ss_dssp EEEECCC
T ss_pred EEEECCC
Confidence 9998864
No 291
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.58 E-value=7.9e-14 Score=99.00 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=72.9
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.+..+.. .|+|||+|.+.++|+.|++.|++..+. |+.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 445678999999999999999999999999999999988762 369999999999999999999999998 9999
Q ss_pred eeecCCC
Q 024269 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 107 ~V~~a~~ 113 (124)
T 2kt5_A 107 DIQLVAS 113 (124)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9998864
No 292
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=5.7e-15 Score=100.46 Aligned_cols=80 Identities=11% Similarity=0.132 Sum_probs=70.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
.....+|||+|||..+++++|+++|..||.|..+.++.+..+ |+|||+|.+.++|++|++.|++..+. ++.|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l 87 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKV 87 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET----TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC----CeEE
Confidence 345689999999999999999999999999987666655443 69999999999999999999999998 9999
Q ss_pred eeecCCCC
Q 024269 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
.|+.+...
T Consensus 88 ~V~~a~~~ 95 (98)
T 2cqp_A 88 KLVLGSGP 95 (98)
T ss_dssp EEEESSCS
T ss_pred EEEEcCCC
Confidence 99988653
No 293
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.58 E-value=4.3e-15 Score=99.34 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=66.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhC--CceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
.+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|++|++.|++..+. |+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEEEEE
Confidence 4799999999999999999999999 9999999988644 59999999999999999999999999 999999
Q ss_pred ecCCCCC
Q 024269 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+....
T Consensus 78 ~~~~~~~ 84 (90)
T 3p5t_L 78 TPSNKLE 84 (90)
T ss_dssp CCC----
T ss_pred EECCCCc
Confidence 9887543
No 294
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.58 E-value=9.2e-15 Score=101.61 Aligned_cols=81 Identities=15% Similarity=0.213 Sum_probs=73.0
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|.++|+.||.|..+.++.+..+ |||||+|.+.++|+.|+..|++..+. |+.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQT 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 3456789999999999999999999999999999999877543 69999999999999999999999998 999
Q ss_pred eeeecCCCC
Q 024269 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|..+...
T Consensus 98 l~V~~a~~~ 106 (110)
T 1oo0_B 98 IQVDWCFVK 106 (110)
T ss_dssp CEEEESEES
T ss_pred EEEEEcccC
Confidence 999988643
No 295
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=4.3e-14 Score=98.86 Aligned_cols=83 Identities=19% Similarity=0.281 Sum_probs=72.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCcc----C
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW----A 192 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~----~ 192 (270)
......+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|+.|++.|++..+.+.. .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 3445689999999999999999999999999999999988632 59999999999999999999999996333 4
Q ss_pred CceeeeecCC
Q 024269 193 RGRITVKRYD 202 (270)
Q Consensus 193 ~~~i~v~~~~ 202 (270)
++.|.|.++.
T Consensus 101 ~~~l~v~~a~ 110 (114)
T 1x5o_A 101 TEPLLCKFSG 110 (114)
T ss_dssp SSCBEEEECC
T ss_pred CCceeEEccC
Confidence 7888888876
No 296
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.57 E-value=1.6e-14 Score=101.15 Aligned_cols=79 Identities=20% Similarity=0.237 Sum_probs=71.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC-cEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
..+..+|||+|||..+++++|.++|+.||.|..+.++.+... |+|||+|.+.++|+.|+..|+|..+. |+.|.|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~ 80 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS----NRYLVVL 80 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS----SCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEE
Confidence 345679999999999999999999999999999999876543 79999999999999999999999998 9999999
Q ss_pred cCCC
Q 024269 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.+..
T Consensus 81 ~a~~ 84 (115)
T 3lqv_A 81 YYNA 84 (115)
T ss_dssp ECCH
T ss_pred EecC
Confidence 8863
No 297
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.57 E-value=9.2e-15 Score=98.97 Aligned_cols=77 Identities=16% Similarity=0.275 Sum_probs=69.0
Q ss_pred CCCcceEEecCCCC-CCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 121 RHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
..+..+|||+|||. .+++++|.++|++||.|..+.+. .|||||+|.+.++|+.|++.|++..+. ++.|.|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~ 78 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNF----GKKLILE 78 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCB----TTTBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeC----CcEEEEE
Confidence 34568999999998 99999999999999999999986 369999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 024269 200 RYDRSP 205 (270)
Q Consensus 200 ~~~~~~ 205 (270)
.+....
T Consensus 79 ~a~~~~ 84 (96)
T 2kvi_A 79 VSSSNA 84 (96)
T ss_dssp EEECCC
T ss_pred EcCcCC
Confidence 886543
No 298
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=101.81 Aligned_cols=79 Identities=9% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCcceEEecCCCCCCCHHHHH----HHHHHhCCceEEEEEeC-CCCcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~-~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
.+..+|||+|||..+++++|+ ++|++||.|..|.+... ...|||||+|.+.++|+.|++.|+|..+. |+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----gr~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----GNPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT----TSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC----CCEE
Confidence 446799999999999999876 69999999999888653 33479999999999999999999999999 9999
Q ss_pred eeecCCCC
Q 024269 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
.|.++...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998753
No 299
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.57 E-value=5.4e-15 Score=106.08 Aligned_cols=80 Identities=23% Similarity=0.294 Sum_probs=71.5
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCC---ceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCcc
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 191 (270)
.++.....+|||+|||+.+++++|+++|+.||. |..+.++.+..+ |||||+|.+.++|++|++ +++..+.
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~--- 113 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG--- 113 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS---
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC---
Confidence 344556789999999999999999999999999 888999887653 599999999999999999 9999998
Q ss_pred CCceeeeecCC
Q 024269 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
++.|.|..+.
T Consensus 114 -gr~i~V~~a~ 123 (136)
T 2hgl_A 114 -HRYIEVFKSH 123 (136)
T ss_dssp -SSEEEEEECC
T ss_pred -CEEEEEEECC
Confidence 9999998764
No 300
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.57 E-value=2e-14 Score=97.40 Aligned_cols=77 Identities=17% Similarity=0.302 Sum_probs=69.2
Q ss_pred CCCCCcceEEecCCCC-CCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 119 ISRHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
....+..+|||+|||. .+++++|+++|+.||.|..+.+. .|||||+|.+.++|+.|++.|++..+. |+.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 88 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNF----GKKLI 88 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEET----TEECE
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 3445678999999998 99999999999999999999985 379999999999999999999999998 99999
Q ss_pred eecCCC
Q 024269 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|+.++.
T Consensus 89 V~~a~~ 94 (97)
T 2xnq_A 89 LEVSSS 94 (97)
T ss_dssp EEECCC
T ss_pred EEecCC
Confidence 998864
No 301
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.9e-14 Score=98.38 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=69.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|..||.|..+.+.. ..|||||+|.+.++|+.|+..|++..+. |+.|.|..+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQ----GRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEET----TEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEec
Confidence 3467999999999999999999999999999999984 3479999999999999999999999999 999999887
Q ss_pred CC
Q 024269 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
+.
T Consensus 99 ~~ 100 (101)
T 2la4_A 99 KE 100 (101)
T ss_dssp CC
T ss_pred cC
Confidence 53
No 302
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=9.4e-15 Score=99.93 Aligned_cols=79 Identities=18% Similarity=0.249 Sum_probs=67.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeC---CCCcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~---~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
...+..+|||+|||..+++++|+++|.+||.| .++.+ ...|||||+|.+.++|++|++.|++..+. ++.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 83 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRAI 83 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeEE
Confidence 34456899999999999999999999999987 33333 23479999999999999999999999999 9999
Q ss_pred eeecCCCCC
Q 024269 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+....
T Consensus 84 ~v~~a~~~~ 92 (101)
T 2fc9_A 84 RLELQGPRG 92 (101)
T ss_dssp EEEECSSCC
T ss_pred EEEEcCCCC
Confidence 999987543
No 303
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.56 E-value=1.4e-14 Score=100.55 Aligned_cols=77 Identities=14% Similarity=0.136 Sum_probs=66.9
Q ss_pred CCCceEEEcCCCCCC----------CHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCe
Q 024269 4 RFSRTIYVGNLPSDI----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~----------t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
-++++|.|.|+=... .++||+++|++||.|.+|.|..+ .++|+|||+|.+.++|.+|++.|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 368899999984432 34578999999999999998654 3589999999999999999999999999999
Q ss_pred EEEEEecC
Q 024269 74 RLRVELAH 81 (270)
Q Consensus 74 ~l~v~~~~ 81 (270)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999986
No 304
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-14 Score=98.56 Aligned_cols=75 Identities=16% Similarity=0.267 Sum_probs=67.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
....+|||+|||..+++++|.++|+.||.|..+.++.+.. .|||||+|.+.++|+.|+. +++..+. |+.|.|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l~V 83 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK----ETDLLI 83 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT----TTTCEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC----CEEEEE
Confidence 3457999999999999999999999999999999998754 3699999999999999999 8999998 898988
Q ss_pred ecC
Q 024269 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
..+
T Consensus 84 ~~~ 86 (103)
T 1s79_A 84 LFK 86 (103)
T ss_dssp EEH
T ss_pred EEc
Confidence 754
No 305
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=4.6e-15 Score=98.13 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=67.2
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|++||.|..+.++.+.. .|||||+|.+.++|+.|++.|++..+. ++.|++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ----AQMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC----EESCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe----eEEEee
Confidence 457999999999999999999999999999999988754 369999999999999999999999998 777766
Q ss_pred ecC
Q 024269 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
...
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 543
No 306
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.56 E-value=9.2e-15 Score=102.78 Aligned_cols=80 Identities=25% Similarity=0.328 Sum_probs=71.4
Q ss_pred CCCCCCcceEEecCCCCCCCHHHHHHHHHHhCC---ceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCcc
Q 024269 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 118 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 191 (270)
..+.....+|||+|||..+++++|+++|..||. |..+.++.+..+ |||||+|.+.++|++|++ +++..+.
T Consensus 11 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~--- 86 (118)
T 2db1_A 11 GPEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG--- 86 (118)
T ss_dssp SSCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET---
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC---
Confidence 344556789999999999999999999999998 889999887654 599999999999999999 9999998
Q ss_pred CCceeeeecCC
Q 024269 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
++.|.|..+.
T Consensus 87 -gr~i~V~~a~ 96 (118)
T 2db1_A 87 -HRYIEVFKSH 96 (118)
T ss_dssp -TEEEEEEEEC
T ss_pred -CeEEEEEECC
Confidence 9999998875
No 307
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.56 E-value=2.5e-15 Score=108.15 Aligned_cols=80 Identities=16% Similarity=0.207 Sum_probs=68.1
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
......+|||.|||+.+++++|+++|+.|| +..+.++.+..+ |||||+|.+.++|++|+ ++++..+. ++.|
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~----gR~i 115 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ----HRYI 115 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS----SCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC----CEEE
Confidence 344567999999999999999999999999 679998877543 69999999999999999 78999998 8999
Q ss_pred eeecCCCCC
Q 024269 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+....
T Consensus 116 ~V~~a~~~~ 124 (139)
T 2hgn_A 116 ELFLNSTTG 124 (139)
T ss_dssp CCEECCCSC
T ss_pred EEEECCCCC
Confidence 998876543
No 308
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.56 E-value=1.2e-13 Score=97.01 Aligned_cols=77 Identities=8% Similarity=0.027 Sum_probs=67.0
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcE-EEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~-~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
...|||+||++.+++++|.++|++||.|..+.+... .|+ |||+|.+.++|..|++.|+|..+.+ ..+.|.|.+++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g--~~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYA--GCCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBT--TBSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecC--CCeEEEEEEec
Confidence 346789999999999999999999999999998764 375 9999999999999999999999982 02689999987
Q ss_pred CC
Q 024269 203 RS 204 (270)
Q Consensus 203 ~~ 204 (270)
..
T Consensus 101 ~~ 102 (124)
T 2e5i_A 101 PT 102 (124)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 309
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.55 E-value=5.4e-14 Score=102.08 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=69.9
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.++. .|||||+|.+.++|++|++.|++..+. |+.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET----TEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 344678999999999999999999999999999999987743 369999999999999999999999998 999
Q ss_pred eeeecC
Q 024269 196 ITVKRY 201 (270)
Q Consensus 196 i~v~~~ 201 (270)
|.|+.+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 998764
No 310
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.55 E-value=8.5e-15 Score=99.87 Aligned_cols=76 Identities=21% Similarity=0.274 Sum_probs=69.8
Q ss_pred CcceEEecCCCC------CCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccC
Q 024269 123 SEYRVIVRGLPS------SASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 123 ~~~~l~v~~l~~------~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~ 192 (270)
..++|||+|||. .+++++|.++|++||.|..+.++.+..+ |||||+|.+.++|++|++.|++..+.
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~---- 80 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD---- 80 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS----
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC----
Confidence 357999999999 9999999999999999999999988763 69999999999999999999999998
Q ss_pred C-ceeeeecCC
Q 024269 193 R-GRITVKRYD 202 (270)
Q Consensus 193 ~-~~i~v~~~~ 202 (270)
| +.|.|..+.
T Consensus 81 g~r~l~V~~a~ 91 (100)
T 3ns6_A 81 LKHRLFLYTMK 91 (100)
T ss_dssp SSCBCEEEESH
T ss_pred CCeEEEEEECc
Confidence 7 999998764
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.55 E-value=8.9e-15 Score=101.69 Aligned_cols=75 Identities=15% Similarity=0.315 Sum_probs=68.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
..++|||+|||..+++++|+++|.+||.|..+.++.. .++|||+|.+.++|+.|++.||+..+. ++.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG--GITAIVEFLEPLEARKAFRHLAYSKFH----HVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS--SSCEEEEESCHHHHHHHHHHHTTCBSS----SSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEEEEEECC
Confidence 4579999999999999999999999999999988753 479999999999999999999999998 9999999886
Q ss_pred C
Q 024269 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 312
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-14 Score=95.94 Aligned_cols=77 Identities=16% Similarity=0.167 Sum_probs=67.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCC-ceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCC-ccccCccCCceeeeec
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD-TEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~-~~~~~~~~~~~i~v~~ 200 (270)
...+|||+|||..+++++|+++|.+||. |..+.+.. .+||||+|.+.++|+.|++.|++ ..+. ++.|.|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELH----GKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEET----TEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeEC----CEEEEEEE
Confidence 4579999999999999999999999999 66665543 36999999999999999999999 8998 99999999
Q ss_pred CCCCCC
Q 024269 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
+.....
T Consensus 80 a~~~~~ 85 (93)
T 2cqh_A 80 SVSKKL 85 (93)
T ss_dssp CCCCCC
T ss_pred ccCccc
Confidence 875443
No 313
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.4e-14 Score=116.30 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=71.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec--CCCCCceEEEEEccHHHHHHHHHhcCC-CccC---CeEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDG-YNFD---GCRLRV 77 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g-~~~~---g~~l~v 77 (270)
.++++|||+|||+.+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999854 567899999999999999999999954 4444 999999
Q ss_pred EecCCC
Q 024269 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 999865
No 314
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=9.7e-14 Score=94.08 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=69.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
..+..+|||+|+ .+++++|+++|.+||.|..+.+. ...|+|||+|.+.++|+.|++.|++..+. ++.|.|..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEET----TEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEE
Confidence 345689999996 89999999999999999999985 34479999999999999999999999998 99999999
Q ss_pred CCCCCC
Q 024269 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
+.....
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 875443
No 315
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=2e-14 Score=99.17 Aligned_cols=82 Identities=18% Similarity=0.209 Sum_probs=69.4
Q ss_pred CCcceEEe--cCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccc-cCccCCceeee
Q 024269 122 HSEYRVIV--RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF-RNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~-~~~~~~~~i~v 198 (270)
.+..+||| +||+..+++++|+++|++||.|..+.++.+ .|||||+|.+.++|++|++.|||.++ .....+..|.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 45678999 779999999999999999999999888654 47999999999999999999999988 32222788889
Q ss_pred ecCCCCC
Q 024269 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
.++..-+
T Consensus 101 ~~a~~~p 107 (114)
T 2cq2_A 101 NFVEKVQ 107 (114)
T ss_dssp EEESCCC
T ss_pred EecccCc
Confidence 8886433
No 316
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.4e-14 Score=94.63 Aligned_cols=79 Identities=22% Similarity=0.328 Sum_probs=70.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.....+|||+|||..+++++|+++|..| .|..+.++.+..+ |+|||+|.+.++|+.|++ |++..+. ++.|.
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~----gr~i~ 80 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG----GRYIE 80 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET----TEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC----CcEEE
Confidence 3456899999999999999999999999 9999999887432 599999999999999999 9999999 99999
Q ss_pred eecCCCCC
Q 024269 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..+...+
T Consensus 81 v~~a~~~~ 88 (91)
T 2dgw_A 81 VFREKSGP 88 (91)
T ss_dssp EEEESSCC
T ss_pred EEECCcCC
Confidence 99886543
No 317
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.3e-14 Score=103.06 Aligned_cols=79 Identities=20% Similarity=0.210 Sum_probs=67.2
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEe-CCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR-DSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~-~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
.+.....+|||+|||..+++++|+++|..||.|..+.++. ... .|||||+|.+.++|++|++ |++..+. ++
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG----NR 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST----TS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC----Cc
Confidence 4455678999999999999999999999999987743333 322 2699999999999999999 9999999 99
Q ss_pred eeeeecCC
Q 024269 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|..+.
T Consensus 95 ~i~V~~a~ 102 (124)
T 1wel_A 95 FIQVHPIT 102 (124)
T ss_dssp CBEEEEEC
T ss_pred EEEEEECC
Confidence 99998875
No 318
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.7e-14 Score=98.15 Aligned_cols=80 Identities=18% Similarity=0.174 Sum_probs=69.0
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceE-EEEEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
+......+|||+|||..+++++|+++|..||.|.. +.++.+.. .|||||+|.+.++|++|++. ++..+. ++
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~----gr 84 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG----HR 84 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS----SS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC----Cc
Confidence 34456689999999999999999999999999987 77776533 36999999999999999998 999988 89
Q ss_pred eeeeecCCC
Q 024269 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.|.|..+..
T Consensus 85 ~i~v~~~~~ 93 (104)
T 1wg5_A 85 YIEIFKSSR 93 (104)
T ss_dssp CCEEEEECT
T ss_pred EEEEEECCH
Confidence 999987754
No 319
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.54 E-value=3.2e-14 Score=97.93 Aligned_cols=78 Identities=13% Similarity=0.242 Sum_probs=68.7
Q ss_pred CCcceEEecCCCCCC------CHHHHHHHHHHhCCceEEEEEeCC--CCcEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 122 HSEYRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
...++|||+|||..+ ++++|.++|++||.|..+.++... ..|||||+|.+.++|+.|+..|+|..+. |
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~----g 88 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----K 88 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS----T
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC----C
Confidence 346799999999999 789999999999999999987422 2379999999999999999999999998 8
Q ss_pred c-eeeeecCCC
Q 024269 194 G-RITVKRYDR 203 (270)
Q Consensus 194 ~-~i~v~~~~~ 203 (270)
+ .|.|..+..
T Consensus 89 ~~~l~V~~a~~ 99 (105)
T 2nlw_A 89 QHTFRVNLFTD 99 (105)
T ss_dssp TCEEEEECSCC
T ss_pred CceEEEEEcch
Confidence 8 999998864
No 320
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1.6e-13 Score=94.04 Aligned_cols=81 Identities=22% Similarity=0.283 Sum_probs=70.1
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
....+..+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|+.|++. +..+. |+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~----g~ 83 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMID----GR 83 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEET----TE
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeC----Ce
Confidence 34455689999999999999999999999999999999987653 5999999999999999994 55677 99
Q ss_pred eeeeecCCCCC
Q 024269 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|.|..+....
T Consensus 84 ~l~v~~a~~~~ 94 (103)
T 2cqg_A 84 WCDCKLPNSKQ 94 (103)
T ss_dssp EEEEECCCTTC
T ss_pred EEEEEecCCCC
Confidence 99999987543
No 321
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2e-14 Score=98.86 Aligned_cols=79 Identities=28% Similarity=0.387 Sum_probs=71.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.|++..+. |+.|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----GRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS----SSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 4579999999999999999999999999999999887543 59999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 024269 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+....
T Consensus 83 ~~a~~~~ 89 (104)
T 1p1t_A 83 DNAASEK 89 (104)
T ss_dssp EETTCTT
T ss_pred EeCCCcc
Confidence 9887543
No 322
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=4e-14 Score=96.78 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=67.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.....+|||.|||+.+++++|+++|..||.+ .+.++.+..+ |||||+|.+.++|++|++ +++..+. ++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ----HRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS----SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC----CcEEE
Confidence 3456899999999999999999999999954 8998887643 599999999999999995 7999998 89999
Q ss_pred eecCCC
Q 024269 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|..+..
T Consensus 86 V~~~~~ 91 (102)
T 1wez_A 86 LFLNST 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 987754
No 323
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.8e-14 Score=99.76 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=69.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|+.|+ .|++..+. |+.|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~ 97 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL----GVPII 97 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC----CeEEE
Confidence 34579999999999999999999999999999999876643 69999999999999999 99999998 99999
Q ss_pred eecCC
Q 024269 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..+.
T Consensus 98 V~~a~ 102 (114)
T 2cq4_A 98 VQASQ 102 (114)
T ss_dssp EEEHH
T ss_pred EEecC
Confidence 98875
No 324
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=2e-14 Score=99.17 Aligned_cols=76 Identities=24% Similarity=0.314 Sum_probs=68.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
.....+|||+|||+.+++++|+++|+.| .|..+.++.+..+ |+|||+|.+.++|++|+ .+++..+. ++.|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~i~ 86 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI----QRYVE 86 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET----TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC----CeEEE
Confidence 3456799999999999999999999999 8999999877543 69999999999999999 69999998 99999
Q ss_pred eecCC
Q 024269 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..+.
T Consensus 87 V~~a~ 91 (109)
T 2dnn_A 87 VSPAT 91 (109)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 98775
No 325
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.54 E-value=9.2e-15 Score=98.81 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=68.0
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
+..+|||.|||..+++++|+++|.+||.|..+.++.+... |+|||+|.+.++|++|++.|++..+. ++.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEE
Confidence 4589999999999999999999999999987777765443 59999999999999999999999999 999999
Q ss_pred ecCC
Q 024269 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8764
No 326
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.54 E-value=5e-14 Score=100.98 Aligned_cols=79 Identities=11% Similarity=0.184 Sum_probs=70.7
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceE--EEEEeCCCC----cEEEEEecChhhHHHHHHHhCCc----cccCc
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDT----EFRNP 190 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~----~~~~~ 190 (270)
.....+|||+|||..+++++|+++|.+||.|.. +.++.+..+ |||||+|.+. +|.+|+..|++. .+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~-- 96 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID-- 96 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC--
Confidence 345679999999999999999999999999966 888887743 6999999999 999999999999 888
Q ss_pred cCCceeeeecCCCC
Q 024269 191 WARGRITVKRYDRS 204 (270)
Q Consensus 191 ~~~~~i~v~~~~~~ 204 (270)
|+.|.|+.+...
T Consensus 97 --gr~l~V~~a~~~ 108 (131)
T 2m2b_A 97 --GKTINVEFAKGS 108 (131)
T ss_dssp --GCCCCCEECCCS
T ss_pred --CEEEEEEECCCC
Confidence 999999998653
No 327
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.54 E-value=5.1e-14 Score=93.47 Aligned_cols=76 Identities=20% Similarity=0.319 Sum_probs=67.2
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |+|||+|.+.++|++|++ +++..+. |+.|
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i 82 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD----GRVI 82 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET----TEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC----CEEE
Confidence 345689999999999999999999999999999999987653 599999999999999996 5777787 9999
Q ss_pred eeecC
Q 024269 197 TVKRY 201 (270)
Q Consensus 197 ~v~~~ 201 (270)
.|+.+
T Consensus 83 ~v~~A 87 (87)
T 3s7r_A 83 DPKKA 87 (87)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 88754
No 328
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.53 E-value=5.2e-14 Score=93.84 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=68.9
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|+++|+.||.|..+.+..+.. .|+|||+|.+.++|+.|+ .|++..+. |+.|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR----GRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET----TEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC----CcEEEEE
Confidence 46899999999999999999999999999999988753 359999999999999999 99999998 9999999
Q ss_pred cCCC
Q 024269 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.++.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 8764
No 329
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.53 E-value=4.3e-14 Score=104.14 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=69.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhC--CceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
...+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|+.|++.|++..+. |+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----GEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEe
Confidence 457999999999999999999999999 9999999988654 59999999999999999999999999 9999
Q ss_pred eeecCC
Q 024269 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999885
No 330
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=94.40 Aligned_cols=70 Identities=14% Similarity=0.256 Sum_probs=61.8
Q ss_pred ceEEecCCCCCC------CHHHHHHHHHHhCCceEEEEEeCC--CCcEEEEEecChhhHHHHHHHhCCccccCccCCc-e
Q 024269 125 YRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-R 195 (270)
Q Consensus 125 ~~l~v~~l~~~~------~~~~l~~~f~~~g~i~~~~~~~~~--~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~-~ 195 (270)
++|||+|||..+ ++++|+++|++||.|..+.++... ..|||||+|.+.++|+.|++.|+|..+. |+ .
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS----SSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC----Ccee
Confidence 589999999999 679999999999999999987432 2379999999999999999999999998 77 6
Q ss_pred eee
Q 024269 196 ITV 198 (270)
Q Consensus 196 i~v 198 (270)
|.|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 765
No 331
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=7e-14 Score=98.06 Aligned_cols=80 Identities=15% Similarity=0.229 Sum_probs=71.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|+.|++. ++..+. ++.|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~ 99 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID----GRVVE 99 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC----CEEEE
Confidence 34579999999999999999999999999999999987543 6999999999999999998 999998 99999
Q ss_pred eecCCCCCC
Q 024269 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 100 V~~a~~~~~ 108 (116)
T 1x4b_A 100 PKRAVAREE 108 (116)
T ss_dssp EECCSSCCC
T ss_pred EEECCCCcc
Confidence 999875443
No 332
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=7.3e-14 Score=91.54 Aligned_cols=71 Identities=17% Similarity=0.285 Sum_probs=63.1
Q ss_pred ceEEecCCCCCCCHHH----HHHHHHHh-CCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 125 YRVIVRGLPSSASWQD----LKDHMRKA-GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~----l~~~f~~~-g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
+.|||.|||..+++++ |.++|++| |+|..+. .|+|||.|.+.++|..|++.|+|..+. |+.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------gG~AfV~F~~~esA~~A~~~l~G~~l~----gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------GCSAILRFINQDSAERAQKRMENEDVF----GNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------TTCEEEEESSHHHHHHHHHHHTTCCSS----SSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------cCEEEEEECCHHHHHHHHHHhcCCccC----CceEEEE
Confidence 3499999999999988 55899999 4998882 289999999999999999999999999 9999999
Q ss_pred cCCCCC
Q 024269 200 RYDRSP 205 (270)
Q Consensus 200 ~~~~~~ 205 (270)
+++..+
T Consensus 80 ~A~~~s 85 (96)
T 2diu_A 80 FTPKNR 85 (96)
T ss_dssp SSCCSC
T ss_pred ecCCCc
Confidence 997543
No 333
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.52 E-value=5.8e-14 Score=99.71 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=69.4
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|+.|+ .|++..+. |+.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR----GRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 4579999999999999999999999999999999887433 59999999999999999 89999998 999999
Q ss_pred ecCCC
Q 024269 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..++.
T Consensus 110 ~~a~~ 114 (124)
T 2jwn_A 110 LPKRT 114 (124)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 98864
No 334
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.52 E-value=5.1e-14 Score=99.36 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=69.3
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcE-EEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~-~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
.....|||+||++.+++++|.++|++||.|..+.+.... .|+ |||+|.+.++|+.|++.|+|..+.+ ..+.|+|++
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g--~~~~LrI~~ 102 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDF 102 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEET--TEEEEEEEE
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecC--CCcEEEEEe
Confidence 344678899999999999999999999999999887754 356 9999999999999999999999982 128999999
Q ss_pred CCCC
Q 024269 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
++..
T Consensus 103 ak~~ 106 (130)
T 3zzy_A 103 SKLT 106 (130)
T ss_dssp CSCS
T ss_pred cCCC
Confidence 8743
No 335
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.52 E-value=1.6e-14 Score=98.58 Aligned_cols=80 Identities=16% Similarity=0.397 Sum_probs=67.9
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC-----CCcEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-----~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
.......+|||+|||..+++++|+++|+.|| |..+.++.+. ..|||||+|.+.++|+.|+ .|++..+. |
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~----g 87 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----N 87 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT----T
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC----C
Confidence 3445678999999999999999999999999 9999998775 2369999999999999999 89999998 9
Q ss_pred ceeeeecCCCC
Q 024269 194 GRITVKRYDRS 204 (270)
Q Consensus 194 ~~i~v~~~~~~ 204 (270)
+.|.|..+..+
T Consensus 88 ~~l~V~~a~~~ 98 (100)
T 2j76_E 88 RRIRVDVADQA 98 (100)
T ss_dssp BCCCCEECCCS
T ss_pred eEEEEEeccCC
Confidence 99999988643
No 336
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=2.7e-14 Score=92.54 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=65.4
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
++|||+|||..+++++|+++|++||.|..+.+..++. .|+|||+|.+.++|+.|++.++ ..+. |+.|.|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEEEe
Confidence 3799999999999999999999999999999988764 3699999999999999999999 8888 88888876
Q ss_pred C
Q 024269 201 Y 201 (270)
Q Consensus 201 ~ 201 (270)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 5
No 337
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=1.3e-13 Score=92.94 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=64.8
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCc-EEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT-YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g-~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
...+|||+|||..+++++|+++|..||.|..+ +.+..++ ||||+|.+.++|++|++ |++..+. |+.|.|+.+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~----g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG----GHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET----TEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC----CEEEEEEEC
Confidence 34699999999999999999999999999987 3333333 99999999999999999 9999999 999999877
Q ss_pred CC
Q 024269 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
..
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 338
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.52 E-value=2.7e-14 Score=92.02 Aligned_cols=71 Identities=18% Similarity=0.285 Sum_probs=64.5
Q ss_pred eEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
+|||+|||..+++++|+++|++||.|..+.++.++.+ |+|||+|.+.++|++|++ +++..+. |+.|.|+.+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEEeC
Confidence 4899999999999999999999999999999877543 699999999999999998 9999998 899988764
No 339
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.52 E-value=2.4e-14 Score=97.09 Aligned_cols=81 Identities=14% Similarity=0.176 Sum_probs=70.6
Q ss_pred CCCcceEEecCCCCCCCHHHHH----HHHHHhCCceEEEEEeC-CCCcEEEEEecChhhHHHHHHHhCCccccCccCCce
Q 024269 121 RHSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~i~~~~~~~~-~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~ 195 (270)
..+..+|||+|||..+++++|+ ++|++||.|..+.+... ...|+|||+|.+.++|+.|++.|++..+. |+.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 80 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY----DKP 80 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC----CcE
Confidence 3456899999999999999999 99999999999988742 22369999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024269 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..+....
T Consensus 81 l~v~~a~~~~ 90 (97)
T 1nu4_A 81 MRIQYAKTDS 90 (97)
T ss_dssp CEEEECSSCC
T ss_pred EEEEEccCCC
Confidence 9999887543
No 340
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=3.1e-14 Score=99.51 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=69.5
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCc-eEEEEEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i-~~~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|+++|..||.| ..+.++.+.. .|||||+|.+.++|++|++. ++..+. ++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~----gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN----GREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET----TEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC----CeEE
Confidence 3456899999999999999999999999999 8888887663 26999999999999999997 999998 9999
Q ss_pred eeecCCC
Q 024269 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 87 ~v~~a~~ 93 (114)
T 2cpy_A 87 FVHVVTL 93 (114)
T ss_dssp EEEEECH
T ss_pred EEEECCH
Confidence 9998863
No 341
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=2.3e-13 Score=94.26 Aligned_cols=79 Identities=18% Similarity=0.289 Sum_probs=69.5
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCC-ceEEEEE-eCCC----CcEEEEEecChhhHHHHHHHhC--CccccCccCCc
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVS-RDSE----GTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARG 194 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~-i~~~~~~-~~~~----~g~~~v~f~~~~~a~~a~~~l~--~~~~~~~~~~~ 194 (270)
+.++|||+|||..+++++|+++|..||. |..+.++ .+.. .|||||+|.+.++|+.|++.|+ +..+. ++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~----g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW----GH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT----TB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec----CC
Confidence 4579999999999999999999999998 9999887 4433 3699999999999999999996 57888 99
Q ss_pred eeeeecCCCCC
Q 024269 195 RITVKRYDRSP 205 (270)
Q Consensus 195 ~i~v~~~~~~~ 205 (270)
.|.|..+....
T Consensus 83 ~l~V~~a~~~~ 93 (109)
T 2dis_A 83 QIAVDWAEPEI 93 (109)
T ss_dssp CCEEEESCSSC
T ss_pred eEEEEEcCCCC
Confidence 99999987544
No 342
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=3.1e-14 Score=96.40 Aligned_cols=80 Identities=8% Similarity=0.166 Sum_probs=68.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
...+..+|||+|||..+++++|+++|..||.|..+ .......|||||+|.+.++|+.|++.|++..+. |+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEE
Confidence 34466899999999999999999999999988777 222233379999999999999999999999998 9999999
Q ss_pred cCCCC
Q 024269 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
.+...
T Consensus 87 ~a~~~ 91 (96)
T 1fjc_A 87 YTGEK 91 (96)
T ss_dssp ECSSS
T ss_pred EcCCC
Confidence 88643
No 343
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.50 E-value=2e-13 Score=93.38 Aligned_cols=81 Identities=22% Similarity=0.356 Sum_probs=68.3
Q ss_pred CCCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
....+..+|||+|||..+++++|+++|..|+ .+.++.+... |||||+|.+.++|+.|++.|++..+. ++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 82 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID----GN 82 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC----Ce
Confidence 3445678999999999999999999999774 4556655433 59999999999999999999999999 99
Q ss_pred eeeeecCCCCCC
Q 024269 195 RITVKRYDRSPS 206 (270)
Q Consensus 195 ~i~v~~~~~~~~ 206 (270)
.|.|..+.....
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2fc8_A 83 KVTLDWAKPKGE 94 (102)
T ss_dssp ECEEEECCCCCS
T ss_pred EEEEEEecCCCC
Confidence 999999875443
No 344
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.50 E-value=9.6e-14 Score=96.13 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=68.6
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
.....+|||+|||..+++++|.++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++.++ ..+. |+.|
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~----g~~l 96 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTI 96 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEET----TEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCC----CEEE
Confidence 345689999999999999999999999999999999887543 699999999999999999874 7777 9999
Q ss_pred eeecCCCCC
Q 024269 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+....
T Consensus 97 ~V~~a~~~~ 105 (109)
T 2rs2_A 97 DPKVAFPRR 105 (109)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCCC
Confidence 999887544
No 345
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.50 E-value=3.5e-14 Score=98.09 Aligned_cols=78 Identities=12% Similarity=0.180 Sum_probs=69.4
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCC---ceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~---i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
......+|||+|||+.+++++|+++|..||. |..+.++.+..+ |+|||+|.+.++|+.|++ +++..+. +
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----g 81 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG----Q 81 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS----S
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC----C
Confidence 3456689999999999999999999999988 889998877553 699999999999999999 9999988 8
Q ss_pred ceeeeecCC
Q 024269 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|..+.
T Consensus 82 r~i~V~~a~ 90 (107)
T 2lmi_A 82 RYVEVYEIN 90 (107)
T ss_dssp SCCCCEECC
T ss_pred eEEEEEECC
Confidence 999988775
No 346
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.50 E-value=1.6e-13 Score=93.77 Aligned_cols=78 Identities=15% Similarity=0.226 Sum_probs=66.4
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEe----CCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR----DSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~----~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|..||.|.. .++. ....|||||+|.+.++|++|++ |++..+. ++.|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~l~ 88 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF----GNEIK 88 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT----TBCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC----CcEEE
Confidence 35689999999999999999999999998766 2222 2344799999999999999999 9999998 99999
Q ss_pred eecCCCCC
Q 024269 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..+....
T Consensus 89 V~~a~~~~ 96 (101)
T 1fj7_A 89 LEKPKGRD 96 (101)
T ss_dssp EECCSCCC
T ss_pred EEEcCCCC
Confidence 99986543
No 347
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.49 E-value=1.3e-13 Score=91.45 Aligned_cols=72 Identities=17% Similarity=0.384 Sum_probs=65.5
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHh----C-------CceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCc
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKA----G-------DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 190 (270)
.+..+|||+|||..+++++|+++|..| | .|..+.+..+ .|||||+|.+.++|+.|+ .|++..+.
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~-- 78 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQ-- 78 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEET--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEEC--
Confidence 356899999999999999999999999 8 8999988866 479999999999999999 99999998
Q ss_pred cCCceeeeec
Q 024269 191 WARGRITVKR 200 (270)
Q Consensus 191 ~~~~~i~v~~ 200 (270)
|+.|.|+.
T Consensus 79 --g~~l~V~r 86 (87)
T 2hzc_A 79 --GQSLKIRR 86 (87)
T ss_dssp --TEECEEEC
T ss_pred --CeEEEEeC
Confidence 88888864
No 348
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.48 E-value=1.6e-13 Score=103.30 Aligned_cols=79 Identities=14% Similarity=0.158 Sum_probs=71.5
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
...+.++|||+|||..+++++|+++|+.||.|..+.+..+.. .|+|||+|.+.++|+.|++.|++..+. ++.|
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~----Gr~l 159 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPM 159 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS----SSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC----CEEE
Confidence 345578999999999999999999999999999999988652 269999999999999999999999998 8999
Q ss_pred eeecCC
Q 024269 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 160 ~V~~a~ 165 (177)
T 2f3j_A 160 DIQLVA 165 (177)
T ss_dssp EEEEES
T ss_pred EEEEec
Confidence 998875
No 349
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.7e-14 Score=101.66 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=66.9
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCc----eEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i----~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
.....+|||+|||+.+++++|+++|+.||.| ..+.++.+..+ |||||+|.+.++|++|++. ++..+. +
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~----g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG----K 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS----S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC----C
Confidence 3556899999999999999999999999875 67888877543 6999999999999999996 888888 8
Q ss_pred ceeeeecCC
Q 024269 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 899888764
No 350
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.48 E-value=4.2e-14 Score=94.50 Aligned_cols=75 Identities=27% Similarity=0.358 Sum_probs=67.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|+++|+.||.|..+.+..+.. .|+|||+|.+.+ |+.|+..|++..+. |+.|.|+.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEEEE
Confidence 4799999999999999999999999999999987754 369999999999 99999999999998 99999998
Q ss_pred CCCC
Q 024269 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
+...
T Consensus 77 a~~~ 80 (90)
T 2ki2_A 77 ANPK 80 (90)
T ss_dssp C---
T ss_pred cCCC
Confidence 8643
No 351
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.48 E-value=1.4e-13 Score=107.96 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=69.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhC--CceEEEEEeCCCC----cEEEEEecChhhHHHHHHHhCCccccCccCCcee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g--~i~~~~~~~~~~~----g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i 196 (270)
..++|||+||+..+++++|+++|..|| .|..|.|+.+..+ |||||+|.+.++|++||+.|++..|. ++.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT----TBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC----CEEe
Confidence 457899999999999999999999999 9999999988654 59999999999999999999999999 9999
Q ss_pred eeecCC
Q 024269 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999875
No 352
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.47 E-value=1.1e-13 Score=97.78 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=65.6
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCce--EEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--FAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~--~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
......+|||+|||+.+++++|+++|+.| .|. .+.++.+..+ |||||+|.+.++|++|++. ++..+. ++
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~----gR 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIG----HR 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBT----TB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEEC----CE
Confidence 34456789999999999999999999999 666 8888876543 6999999999999999985 668888 88
Q ss_pred eeeeecCC
Q 024269 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|..+.
T Consensus 112 ~I~V~~a~ 119 (126)
T 2hgm_A 112 YIEVFKSS 119 (126)
T ss_dssp CCCCEEEC
T ss_pred EEEEEECC
Confidence 88887664
No 353
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.47 E-value=7e-14 Score=92.99 Aligned_cols=75 Identities=20% Similarity=0.334 Sum_probs=67.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
...+|||+|||..+++++|+++|.+| .|..+.+. ...|+|||+|.+.++|+.|++.|++..+. |+.|.|+.+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~~a~ 76 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----GKDLIVQLQP 76 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEEEEcC
Confidence 34789999999999999999999999 99999885 44479999999999999999999999999 9999999886
Q ss_pred CC
Q 024269 203 RS 204 (270)
Q Consensus 203 ~~ 204 (270)
..
T Consensus 77 ~~ 78 (88)
T 1wg1_A 77 TD 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 354
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.47 E-value=1.8e-13 Score=99.62 Aligned_cols=81 Identities=12% Similarity=0.117 Sum_probs=69.0
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceE--------EEEEe-CCCCcEEEEEecChhhHHHHHHHhCCccccCcc
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSR-DSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~-~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 191 (270)
..+..+|||+|||..+++++|.++|..||.|.. +.+.. ....|||||+|.+.++|..|+..||+..+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~--- 118 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF--- 118 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET---
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC---
Confidence 345679999999999999999999999998865 33332 334479999999999999999999999998
Q ss_pred CCceeeeecCCCCC
Q 024269 192 ARGRITVKRYDRSP 205 (270)
Q Consensus 192 ~~~~i~v~~~~~~~ 205 (270)
|+.|.|..+....
T Consensus 119 -g~~l~V~~a~~~~ 131 (143)
T 3egn_A 119 -GKPMVVQFARSAR 131 (143)
T ss_dssp -TEECEEEECCCSC
T ss_pred -CcEEEEEECCCCC
Confidence 9999999987543
No 355
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.46 E-value=3e-13 Score=95.34 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=68.5
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeec
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|+ .+++++|+++|+.||.|..+.+. ...|||||+|.+.++|+.|++.|++..+. |+.|.|..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCS----SCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEE
Confidence 345689999996 69999999999999999999986 34479999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024269 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87544
No 356
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.46 E-value=1.1e-13 Score=89.03 Aligned_cols=71 Identities=15% Similarity=0.284 Sum_probs=63.0
Q ss_pred eEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecC
Q 024269 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~ 201 (270)
+|||+|||..+++++|+++|++||.|..+.++.+.. .|+|||+|.+.++|+.|++. ++..+. |+.|.|+.+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG----LSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT----TBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC----CEEEEEEEC
Confidence 589999999999999999999999999999987654 36999999999999999995 788887 888887653
No 357
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.41 E-value=4.2e-13 Score=91.79 Aligned_cols=75 Identities=17% Similarity=0.304 Sum_probs=66.1
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
....+|||+|||..+++++|.++|+.||.|..+.++.+..+ |||||+|.+.++|+.|++ ++..+. |..|.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~----g~~l~v 80 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH----GKKLKL 80 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC----CEEEEE
Confidence 35679999999999999999999999999999999987632 699999999999999999 777777 777777
Q ss_pred ecCC
Q 024269 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 81 ~~a~ 84 (102)
T 2xs2_A 81 GPAI 84 (102)
T ss_dssp EEEE
T ss_pred EECC
Confidence 7664
No 358
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=1.8e-14 Score=101.05 Aligned_cols=81 Identities=22% Similarity=0.327 Sum_probs=71.7
Q ss_pred CCcceEEecCCCCCCCHHHHHHHHHHhCCceE--------EEEEeCCC----CcEEEEEecChhhHHHHHHHhCCccccC
Q 024269 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~--------~~~~~~~~----~g~~~v~f~~~~~a~~a~~~l~~~~~~~ 189 (270)
.+..+|||+|||..+++++|+++|+.||.|.. +.++.+.. .|||||+|.+.++|+.|++.|++..+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~- 83 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS- 83 (116)
Confidence 34579999999999999999999999999988 77877644 369999999999999999999999998
Q ss_pred ccCCceeeeecCCCCCC
Q 024269 190 PWARGRITVKRYDRSPS 206 (270)
Q Consensus 190 ~~~~~~i~v~~~~~~~~ 206 (270)
++.|.|..+.....
T Consensus 84 ---g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 84 ---GNPIKVSFATRRAD 97 (116)
Confidence 99999999875543
No 359
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.41 E-value=3.7e-13 Score=89.51 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=61.0
Q ss_pred CCCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
+..+..+|||+|||..+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|++ +++..+. ..++.|.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~--~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI--IKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE--ETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc--cCCEEEEEE
Confidence 3456789999999999999999999999999999999876 45799999999999883 5555443 127888888
Q ss_pred cCCC
Q 024269 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.+..
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 8764
No 360
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=1.4e-12 Score=90.40 Aligned_cols=75 Identities=13% Similarity=0.135 Sum_probs=67.7
Q ss_pred CCCceEEEcCCCCC-CCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEcc-HHHHHHHHHhcC--CCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGRD--GYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~-~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~--g~~~~g~~l~v~~ 79 (270)
.+.+.|+|+||+.. ++.++|+++|+.||+|..|.+..+. ..|||+|.+ +++|..|+..|| +..|.|..+.+++
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~---~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA---KEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC---SEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC---CEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 57899999999999 9999999999999999999997653 369999999 899999999894 7899999999987
Q ss_pred cC
Q 024269 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
..
T Consensus 93 L~ 94 (121)
T 1owx_A 93 LE 94 (121)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 361
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.39 E-value=3.2e-12 Score=97.57 Aligned_cols=75 Identities=17% Similarity=0.296 Sum_probs=65.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC---cEEEEEecChhhHHHHHHHhCCccccCccCCceeeee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~---g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~ 199 (270)
...+|||+|||..+++++|+++|+.||.|..+.+..+..+ |+|||+|.+.++|+.|++.++ ..+. |+.|.|.
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~-~~~~----Gr~l~V~ 182 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPG-QKYK----ETDLLIL 182 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTT-CEET----TEECEEE
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCC-CeEC----CEEEEEE
Confidence 3479999999999999999999999999999999886543 699999999999999998765 4777 8999888
Q ss_pred cCC
Q 024269 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
...
T Consensus 183 ~~~ 185 (193)
T 2voo_A 183 FKD 185 (193)
T ss_dssp ETT
T ss_pred EhH
Confidence 754
No 362
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=4.4e-13 Score=89.08 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=61.9
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
...+|||+|||..+++++|+++|++||.|..+.++.+ ..|||||+|.+.++|++| ++..+. ..+..|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~~----~~~~~~--~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQSL----CGEDLI--IKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHHT----TTCEEE--ETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHHH----hcCCce--eCCEEEEEEecC
Confidence 3579999999999999999999999999999999876 447999999999999753 444332 128888888876
Q ss_pred CCC
Q 024269 203 RSP 205 (270)
Q Consensus 203 ~~~ 205 (270)
...
T Consensus 77 ~~~ 79 (88)
T 1wf0_A 77 PKH 79 (88)
T ss_dssp CCC
T ss_pred CCC
Confidence 543
No 363
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=4.1e-12 Score=88.33 Aligned_cols=80 Identities=23% Similarity=0.348 Sum_probs=67.7
Q ss_pred CCcceEEecCCCCCCC-----------HHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCc
Q 024269 122 HSEYRVIVRGLPSSAS-----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~~-----------~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~ 190 (270)
.+..+|+|.||..... +++|+++|++||.|..+.+......|+|||+|.+.++|+.|++.|+|..+.
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 90 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG-- 90 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET--
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC--
Confidence 4567999999954432 579999999999999997754445589999999999999999999999998
Q ss_pred cCCceeeeecCCCCC
Q 024269 191 WARGRITVKRYDRSP 205 (270)
Q Consensus 191 ~~~~~i~v~~~~~~~ 205 (270)
++.|.|..+....
T Consensus 91 --gr~l~v~~a~~~~ 103 (112)
T 2dit_A 91 --GRQITAQAWDGTT 103 (112)
T ss_dssp --TEECEEEECCSCC
T ss_pred --CcEEEEEEeCCCC
Confidence 9999999986543
No 364
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=2.5e-12 Score=83.48 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=64.3
Q ss_pred CCCCceEEEcCCC----CCCCH----HHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeE
Q 024269 3 GRFSRTIYVGNLP----SDIRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 3 ~~~~~~l~v~nL~----~~~t~----~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
+.+.-||+|.-.+ .+.-+ .+|.+.|.+||+|..+++..+ .+||+|.+.++|.+|++ |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 3678899998776 23434 678999999999999999754 49999999999999999 9999999999
Q ss_pred EEEEecCCC
Q 024269 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|+|+++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998765
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=1.3e-12 Score=102.05 Aligned_cols=82 Identities=12% Similarity=0.218 Sum_probs=69.4
Q ss_pred CCcceEEecCCCCCC---------CHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCcccc----
Q 024269 122 HSEYRVIVRGLPSSA---------SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR---- 188 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~---- 188 (270)
....+|||+||+..+ ++++|+++|++||.|..+.++..+ |+|||+|.+.++|+.|++.|++..+.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k--G~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK--NCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG--TEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC--CEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 356799999999988 799999999999999999998754 79999999999999999999999991
Q ss_pred ----CccCCceeeeecCCCCC
Q 024269 189 ----NPWARGRITVKRYDRSP 205 (270)
Q Consensus 189 ----~~~~~~~i~v~~~~~~~ 205 (270)
....++.|.|+.+...+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 01138999999997544
No 366
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.36 E-value=2.9e-12 Score=88.87 Aligned_cols=75 Identities=15% Similarity=0.165 Sum_probs=66.5
Q ss_pred ceEEecCC----CCCCCHHHHHHHHHHhCCceEEEEEeCCCC----cEEEEEecC----hhh----HHHHHH--HhCCcc
Q 024269 125 YRVIVRGL----PSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTN----PED----MKYAIR--KLDDTE 186 (270)
Q Consensus 125 ~~l~v~~l----~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~----g~~~v~f~~----~~~----a~~a~~--~l~~~~ 186 (270)
..|+|+|| |+.+++++|+++|+.||.|..+.++.|+.+ |||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 57999999 999999999999999999999999999988 499999996 444 788888 789999
Q ss_pred ccCccCCceeeeecCCC
Q 024269 187 FRNPWARGRITVKRYDR 203 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~~ 203 (270)
+. |+.|+|...+.
T Consensus 83 I~----Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IM----GFKFEVILNKH 95 (136)
T ss_dssp ET----TEEEEEEECCT
T ss_pred ec----CcEEEEEECcc
Confidence 99 99999987653
No 367
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.36 E-value=3.9e-12 Score=87.05 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=66.8
Q ss_pred CCcceEEecCCCC-----CCCHHHHHHHHHHhCCceEEEEEeCCC-----CcEEEEEecChhhHHHHHHHhCCccccCcc
Q 024269 122 HSEYRVIVRGLPS-----SASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 122 ~~~~~l~v~~l~~-----~~~~~~l~~~f~~~g~i~~~~~~~~~~-----~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 191 (270)
.+..+|+|.|+.. ..++++|+++|++||.|..+.++.++. .|++||+|.+.++|.+|++.|||..+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--- 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--- 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 3567999999863 237899999999999999999988642 379999999999999999999999999
Q ss_pred CCceeeeecCC
Q 024269 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|+.|.+..+.
T Consensus 83 -Gr~i~v~~a~ 92 (105)
T 2pe8_A 83 -GRVVKACFYN 92 (105)
T ss_dssp -TEECEEEECC
T ss_pred -CcEEEEEEcC
Confidence 9999999875
No 368
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=5.2e-12 Score=88.09 Aligned_cols=59 Identities=15% Similarity=0.325 Sum_probs=52.6
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCC-------CCcEEEEEecChhhHHHHHHHh
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-------EGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~-------~~g~~~v~f~~~~~a~~a~~~l 182 (270)
...+|||+|||..+++++|+++|++||.|. +.++.+. ..|||||+|.+.++|++|++.|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 457899999999999999999999999999 7766543 2479999999999999999998
No 369
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.24 E-value=1.6e-11 Score=84.07 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=64.4
Q ss_pred CcceEEecCC--CCCCC--------HHHHHHHHHHhCCceEEEEEeCCC------CcEEEEEecChhhHHHHHHHhCCcc
Q 024269 123 SEYRVIVRGL--PSSAS--------WQDLKDHMRKAGDVCFAEVSRDSE------GTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 123 ~~~~l~v~~l--~~~~~--------~~~l~~~f~~~g~i~~~~~~~~~~------~g~~~v~f~~~~~a~~a~~~l~~~~ 186 (270)
+..+|.|.|+ |..+. +++|+++|++||.|..+.++.+.. .|++||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4568889987 33332 368999999999999999987653 3799999999999999999999999
Q ss_pred ccCccCCceeeeecCC
Q 024269 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
+. |+.|.+.+..
T Consensus 84 f~----GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FA----NRVVVTKYCD 95 (105)
T ss_dssp ET----TEECEEEEEC
T ss_pred eC----CCEEEEEEeC
Confidence 99 9999998764
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.21 E-value=4.7e-11 Score=82.69 Aligned_cols=77 Identities=16% Similarity=0.072 Sum_probs=65.2
Q ss_pred CCcceEEecCCCCCC----------CHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCcc
Q 024269 122 HSEYRVIVRGLPSSA----------SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 122 ~~~~~l~v~~l~~~~----------~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~ 191 (270)
.+..+|.+.|+=... .+++|+++|++||.|..+.+..+...|++||+|.+.++|.+|++.|||..+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--- 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA--- 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET---
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 345678888864222 2357899999999999999988766789999999999999999999999999
Q ss_pred CCceeeeecCC
Q 024269 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|+.|.+.++.
T Consensus 82 -GR~i~v~~~~ 91 (114)
T 3s6e_A 82 -GKMITAAYVP 91 (114)
T ss_dssp -TEECEEEEEC
T ss_pred -CEEEEEEEEc
Confidence 9999999875
No 371
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.20 E-value=3.2e-11 Score=84.10 Aligned_cols=76 Identities=16% Similarity=0.268 Sum_probs=65.3
Q ss_pred CcceEEecCCCC--C---CCHHHHHHHHHHhCCceEEEEEeCCCC--------cEEEEEecChhhHHHHHHHhCCccccC
Q 024269 123 SEYRVIVRGLPS--S---ASWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~v~~l~~--~---~~~~~l~~~f~~~g~i~~~~~~~~~~~--------g~~~v~f~~~~~a~~a~~~l~~~~~~~ 189 (270)
+..+|+|.|+-. . -.+++|+++|++||.|..+.++.+..+ |++||+|.+.++|.+|++.|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 567899999842 2 236899999999999999999887542 69999999999999999999999999
Q ss_pred ccCCceeeeecCC
Q 024269 190 PWARGRITVKRYD 202 (270)
Q Consensus 190 ~~~~~~i~v~~~~ 202 (270)
|+.|.+.++.
T Consensus 98 ---GR~i~v~~~~ 107 (118)
T 3ue2_A 98 ---GRKVVAEVYD 107 (118)
T ss_dssp ---TEECEEEEEC
T ss_pred ---CcEEEEEEcC
Confidence 9999998765
No 372
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=2.1e-11 Score=79.53 Aligned_cols=72 Identities=17% Similarity=0.245 Sum_probs=61.8
Q ss_pred CCCceEEEcCCCCC-----CCH----HHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeE
Q 024269 4 RFSRTIYVGNLPSD-----IRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~~~~l~v~nL~~~-----~t~----~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
.|.-||+|.-++.. +-+ .+|.+.|..||+|..+++..+ -+||+|.+.++|.+|++ |||..++|+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr~ 86 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGRA 86 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTEE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCeE
Confidence 78889999887643 323 568999999999999999855 39999999999999999 9999999999
Q ss_pred EEEEecC
Q 024269 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
|+|.+..
T Consensus 87 L~V~~k~ 93 (95)
T 1ufw_A 87 VKISGPS 93 (95)
T ss_dssp EEEECCC
T ss_pred EEEeccC
Confidence 9998743
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.16 E-value=1.4e-11 Score=84.20 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=57.5
Q ss_pred ecCCCCCCCHHHHHHHH------------HHhCCceEEEEEeCCC---CcEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 129 VRGLPSSASWQDLKDHM------------RKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 129 v~~l~~~~~~~~l~~~f------------~~~g~i~~~~~~~~~~---~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
+.+|+..+++++|++.| ++||.|..+.++.+.. .|+|||+|.+.++|++|++.|||..+. |
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN----G 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET----T
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC----C
Confidence 44566666776666555 9999999999988753 379999999999999999999999999 9
Q ss_pred ceeeeecC
Q 024269 194 GRITVKRY 201 (270)
Q Consensus 194 ~~i~v~~~ 201 (270)
+.|.|.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99988765
No 374
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.14 E-value=6.8e-11 Score=97.33 Aligned_cols=80 Identities=18% Similarity=0.185 Sum_probs=64.7
Q ss_pred CCCCcceEEecC--CCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCc--e
Q 024269 120 SRHSEYRVIVRG--LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG--R 195 (270)
Q Consensus 120 ~~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~--~ 195 (270)
...+..+|||+| |+..+++++|+++|++||.|..+.+.. ..|||||+|.+.++|++|++.|||.++... .|+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~-~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVVDD-LGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEECT-TSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccccc-cCCceE
Confidence 345678999999 578999999999999999999887765 347999999999999999999999998421 123 4
Q ss_pred eeeecCC
Q 024269 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
+.+.+..
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 5555553
No 375
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=3.8e-10 Score=76.19 Aligned_cols=65 Identities=15% Similarity=0.192 Sum_probs=55.4
Q ss_pred CCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCCCCC
Q 024269 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~~~~ 205 (270)
..+++++|+++|++||.|..+.++. ...|||||+|.+.++|+.|++.+++ +. ++.|.|..+...+
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~----g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LV----DNPLKISWLEGQP 91 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CS----SSBCEEECSSCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CC----CCeEEEEEccCCC
Confidence 5689999999999999999999884 4457999999999999999998655 33 8889999886544
No 376
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.02 E-value=6e-10 Score=87.05 Aligned_cols=76 Identities=25% Similarity=0.293 Sum_probs=63.0
Q ss_pred CceEEEcCCCC-----CCCHHHHHHHHhccCceEEEEEec-------CCCCCceEEEEEccHHHHHHHHHhcCCCccCCe
Q 024269 6 SRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKI-------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 6 ~~~l~v~nL~~-----~~t~~~l~~~F~~~G~i~~~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 73 (270)
+..+.+.|+-. .-.+++|.+.|++||.|..+.|.. ++.++|++||+|.+.++|.+|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 44455555432 245688999999999999999942 236789999999999999999999999999999
Q ss_pred EEEEEecC
Q 024269 74 RLRVELAH 81 (270)
Q Consensus 74 ~l~v~~~~ 81 (270)
.|.|.+..
T Consensus 204 ~i~~~~~~ 211 (222)
T 3dxb_A 204 KVVAEVYD 211 (222)
T ss_dssp BCEEEECC
T ss_pred EEEEEEcC
Confidence 99999975
No 377
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.97 E-value=2e-09 Score=74.60 Aligned_cols=77 Identities=10% Similarity=0.220 Sum_probs=64.7
Q ss_pred CCCCCcceEEecCCCCC-CCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecC-hhhHHHHHHHhC--CccccCccCCc
Q 024269 119 ISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTN-PEDMKYAIRKLD--DTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~-~~~a~~a~~~l~--~~~~~~~~~~~ 194 (270)
..-..+..|+|.||+.. ++.++|+++|+.||.|.+|.+..+.. .|||.|.+ .++|..|+.+|+ +..|. +.
T Consensus 13 ~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~----g~ 86 (121)
T 1owx_A 13 LEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLR----NK 86 (121)
T ss_dssp CSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTT----SS
T ss_pred ccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEe----Cc
Confidence 34567789999999999 99999999999999999999988775 79999999 799999999995 55566 55
Q ss_pred eeeeecC
Q 024269 195 RITVKRY 201 (270)
Q Consensus 195 ~i~v~~~ 201 (270)
.+.++..
T Consensus 87 ~~~~evL 93 (121)
T 1owx_A 87 EVTWEVL 93 (121)
T ss_dssp SEEEEEC
T ss_pred EEEEEEC
Confidence 5555443
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.94 E-value=4.8e-09 Score=69.68 Aligned_cols=73 Identities=15% Similarity=0.124 Sum_probs=66.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhcc-----CceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~-----G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
+..++|-|-|||..+++..|+.|+..+ |.|..|.+..+ -+-|+|+|.+...|.+|.-.|+|..|.|++|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 347899999999999999999999999 99999999765 5669999999999999987799999999999996
Q ss_pred e
Q 024269 79 L 79 (270)
Q Consensus 79 ~ 79 (270)
-
T Consensus 96 T 96 (117)
T 2l9w_A 96 T 96 (117)
T ss_dssp C
T ss_pred C
Confidence 3
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=6.5e-09 Score=67.46 Aligned_cols=71 Identities=17% Similarity=0.142 Sum_probs=59.6
Q ss_pred CcceEEecCCC----CCCCH----HHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCc
Q 024269 123 SEYRVIVRGLP----SSASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 123 ~~~~l~v~~l~----~~~~~----~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~ 194 (270)
+..+|+|...+ ..... .+|.+.|.+||.|..+++..+. +||+|.+.+.|.+|++ |+|.++. |+
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~----Gr 76 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELL----NR 76 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEET----TE
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeC----Ce
Confidence 34577777665 23333 5789999999999999999874 9999999999999998 9999999 99
Q ss_pred eeeeecCC
Q 024269 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|+|+.+.
T Consensus 77 ~LkV~lkt 84 (91)
T 2dnr_A 77 TITIALKS 84 (91)
T ss_dssp EEEEEECC
T ss_pred EEEEEeCC
Confidence 99999875
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=3.5e-08 Score=64.34 Aligned_cols=70 Identities=9% Similarity=0.188 Sum_probs=59.2
Q ss_pred CcceEEecCCCCC-----CCH----HHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCC
Q 024269 123 SEYRVIVRGLPSS-----ASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 123 ~~~~l~v~~l~~~-----~~~----~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~ 193 (270)
+..+|+|..++.. ... .+|.+.|..||.|..+++..+. +||+|.+.++|.+|++ |+|.++. |
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~----G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK----G 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET----T
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC----C
Confidence 4568888877643 222 5689999999999999999874 9999999999999999 9999999 9
Q ss_pred ceeeeecC
Q 024269 194 GRITVKRY 201 (270)
Q Consensus 194 ~~i~v~~~ 201 (270)
+.|+|..-
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99998754
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.71 E-value=4.3e-07 Score=59.95 Aligned_cols=74 Identities=19% Similarity=0.238 Sum_probs=61.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhc-----cCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYK-----YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~-----~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
.-.++|.|.|||+.+.++.|.-+|+. =|+|..+.... +-|+|+|.+.+.|+..++ -..+.|.|..|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 45689999999999999999999986 25888887752 679999999999999998 54678889999997
Q ss_pred ecCCC
Q 024269 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
...+.
T Consensus 80 P~~~~ 84 (104)
T 2dhx_A 80 PAPPR 84 (104)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 75433
No 382
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=9.3e-07 Score=58.66 Aligned_cols=77 Identities=18% Similarity=0.130 Sum_probs=65.1
Q ss_pred CCCceEEEcCCCCCC-C----HHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEE
Q 024269 4 RFSRTIYVGNLPSDI-R----EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~-t----~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 78 (270)
.-.++|+|+||+..+ . .+.++.+|..|+++..+..... -.-..|.|.++++|.+|-..||+..|+|+.|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 456789999998864 3 2567899999999988877643 3357999999999999999999999999999999
Q ss_pred ecCCC
Q 024269 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++++.
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99854
No 383
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.47 E-value=3.2e-07 Score=71.46 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=55.6
Q ss_pred CCHHHHHHHHHHhCCceEEEEEeCCCC--------cEEEEEecChhhHHHHHHHhCCccccCccCCceeeeecCC
Q 024269 136 ASWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~i~~~~~~~~~~~--------g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v~~~~ 202 (270)
-.+++|.+.|++||.|..+.+..+..+ |++||+|.+.++|.+|++.|+|..+. |+.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA----GRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC----CeEEEEEEcC
Confidence 356789999999999999999855332 69999999999999999999999999 9999998875
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.39 E-value=2.9e-06 Score=56.45 Aligned_cols=71 Identities=11% Similarity=0.076 Sum_probs=64.7
Q ss_pred CcceEEecCCCCCCCHHHHHHHHHHh-----CCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceee
Q 024269 123 SEYRVIVRGLPSSASWQDLKDHMRKA-----GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~v~~l~~~~~~~~l~~~f~~~-----g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~ 197 (270)
...+|-+-+||..+++..|+.+...+ |.+..+.+..+. +-|+|+|.+...|.+|.-.|+|.++. |+.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH--~GAivef~d~~~AgKasLaL~G~ef~----gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF--NGAIIIFRDSKFAAKMLMILNGSQFQ----GKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT--TEEEEECSCHHHHHHHHHHHSSEEET----TEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC--CceEEEEccchhhHHHHhhcCCeeec----CeEEE
Confidence 35689999999999999999999999 999999988876 46999999999999999999999999 88887
Q ss_pred ee
Q 024269 198 VK 199 (270)
Q Consensus 198 v~ 199 (270)
+-
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.11 E-value=1.8e-05 Score=54.03 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCC-eEEEEEecC
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-CRLRVELAH 81 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~~~ 81 (270)
..+.|.|-++|+.. .+.|...|++||.|.+.... .......|.|.+..+|++||. .||..|+| -.|-|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 36789999999985 66788899999999988762 235789999999999999999 89999985 667777764
No 386
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=98.08 E-value=1e-05 Score=52.74 Aligned_cols=54 Identities=17% Similarity=0.298 Sum_probs=45.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhc
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.+.++| ++|+.+...||.++|+.||.|.--.|.- ..|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEEEET-----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHhc
Confidence 467777 9999999999999999999654444442 37999999999999999965
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.04 E-value=1.7e-05 Score=51.78 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=53.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecC-----CCCCceEEEEEccHHHHHHHHHhcCCCccC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 71 (270)
++|.|++||+.+|++++.+.++.+..+........ ...-.-|||.|.+.+++....+.++|..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57999999999999999999999887766555321 123457999999999999999999998873
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.97 E-value=1.3e-05 Score=52.44 Aligned_cols=54 Identities=17% Similarity=0.295 Sum_probs=44.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+.++| ++|+.+...||.++|+.||.|.--.|.- ..|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~I~WidD-----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQISWIDD-----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEEEEEEET-----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEEEEEEcC-----CeEEEEecCHHHHHHHHHhcc
Confidence 56777 9999999999999999999543333332 379999999999999999664
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.67 E-value=0.00018 Score=47.69 Aligned_cols=73 Identities=14% Similarity=0.080 Sum_probs=62.1
Q ss_pred cceEEecCCCCCC-C----HHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 124 EYRVIVRGLPSSA-S----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 124 ~~~l~v~~l~~~~-~----~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
.++|+|.||+..+ . .+.++++|..|+++......+.- .-..|.|.++++|.+|...||+..+. |..+++
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSF--RRirv~F~~~~~A~~AR~~Lh~~~f~----g~~~r~ 78 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSF--KRVRINFSNPLSAADARLRLHKTEFL----GKEMKL 78 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTT--TEEEEECSSTTHHHHHHHTSTTSEET----TEECEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcc--eEEEEEeCChHHHHHHHHHhccceec----CceeEE
Confidence 3689999998755 2 35789999999998887777654 26889999999999999999999999 889999
Q ss_pred ecCC
Q 024269 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
.++.
T Consensus 79 YFgq 82 (104)
T 1wey_A 79 YFAQ 82 (104)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9887
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.54 E-value=0.00022 Score=46.80 Aligned_cols=77 Identities=21% Similarity=0.236 Sum_probs=55.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEec---C--CCCCceEEEEEccHHHHHHHHHhcCCCccCC-----eE
Q 024269 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---P--PRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CR 74 (270)
Q Consensus 5 ~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~---~--~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-----~~ 74 (270)
.+-+|.|+.||+.+|++++.+.++.+-++....... + ...-.-|||.|.+.+++....+.++|..|-+ -+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~ 87 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDSKGLEYP 87 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECTTCCEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEee
Confidence 467899999999999999888888765543222211 1 1122459999999999999999999988732 24
Q ss_pred EEEEecC
Q 024269 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
..|++|-
T Consensus 88 a~VE~AP 94 (97)
T 2l08_A 88 AVVEFAP 94 (97)
T ss_dssp EEEEECC
T ss_pred eEEEecC
Confidence 4566654
No 391
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.46 E-value=0.0003 Score=48.64 Aligned_cols=77 Identities=23% Similarity=0.291 Sum_probs=56.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEE-Eec---------------CC-CCCceEEEEEccHHHHHHHHHhcC
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKI---------------PP-RPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~-~~~---------------~~-~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.....|.|-+.|+..+ ..+.+.|++||.|.+-. +.. .. ...+...|+|.+..+|.+||. .|
T Consensus 5 ~~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-EN 82 (132)
T ss_dssp ---CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TT
T ss_pred cCceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hC
Confidence 4567788889976654 56778899999987721 110 00 124678999999999999999 99
Q ss_pred CCccCCeEEEEEecCC
Q 024269 67 GYNFDGCRLRVELAHG 82 (270)
Q Consensus 67 g~~~~g~~l~v~~~~~ 82 (270)
|..|+|.-|-|.+..+
T Consensus 83 G~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TCEETTEECEEEECCH
T ss_pred CeEeCcEEEEEEECCH
Confidence 9999999888888753
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.42 E-value=0.00096 Score=43.43 Aligned_cols=65 Identities=18% Similarity=0.387 Sum_probs=56.0
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC------cEEEEEecChhhHHHHHHHhCCccccC
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~------g~~~v~f~~~~~a~~a~~~l~~~~~~~ 189 (270)
.+|.|.+||+.+|++++.+.++....+........... .-|||.|.+.+++..-.+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 46889999999999999999999888877777665433 289999999999999999999998863
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.37 E-value=0.0013 Score=42.94 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=44.7
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhC
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~ 183 (270)
..++| ++|..+...||.++|+.||.| .|.++.+. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45555 999999999999999999954 34455554 89999999999999999774
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.14 E-value=0.001 Score=43.54 Aligned_cols=54 Identities=20% Similarity=0.199 Sum_probs=45.2
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhC
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~ 183 (270)
..++| ++|..+...||.++|+.|| -..|.++.+. .|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 34555 9999999999999999999 4445556654 89999999999999999875
No 395
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.0025 Score=42.07 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=52.6
Q ss_pred cceEEecCCCCCCCHHHHHHHHHH---h--CCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCccccCccCCceeee
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRK---A--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~---~--g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~~~~~~~~i~v 198 (270)
..+|.|.|||..+.++.|.-.|+. - |.|..+.... +-|+|+|.+.+.|+..+++ ....+. +..|.|
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k-~~H~L~----~~~LsV 78 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ-ADHELH----GAQLSL 78 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC-SCCBSS----SSBCEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC-Ccceec----CeEEEE
Confidence 468999999999999999999987 2 4777777755 4799999999999999986 122233 455555
Q ss_pred ecC
Q 024269 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
...
T Consensus 79 ~P~ 81 (104)
T 2dhx_A 79 RPA 81 (104)
T ss_dssp EEC
T ss_pred EcC
Confidence 543
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.05 E-value=0.00032 Score=59.82 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=42.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHH
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.++|+|. .|..+++.+|.++|++||+|..+.+..+. .-||.|||.+.++++.++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 4789996 89999999999999999999999886542 3699999999999998876
No 397
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.86 E-value=0.005 Score=42.00 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=52.4
Q ss_pred CCCcceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCCcccc
Q 024269 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~~~~~ 188 (270)
......|.|.+.|+.. ...+...|.+||.|..... ....+...|.|.+..+|++||. .||..+.
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 3446789999999885 6778899999999988776 3334599999999999999999 5888776
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.19 E-value=0.0046 Score=40.49 Aligned_cols=66 Identities=18% Similarity=0.332 Sum_probs=50.4
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCC------cEEEEEecChhhHHHHHHHhCCccccC
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~------g~~~v~f~~~~~a~~a~~~l~~~~~~~ 189 (270)
..+|.|..||+.+|++++.+.++..-.+.+......... .-|||.|.+.++...-.+.++|..+-+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 358999999999999998887776544433333322221 279999999999999999999998863
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.34 E-value=0.012 Score=50.34 Aligned_cols=56 Identities=14% Similarity=0.181 Sum_probs=42.1
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHH
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~ 181 (270)
...|+|. .|..+++.+|.+.|++||+|..+.+..+.. .|+.|+|.+.+++..++..
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g-~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFG-LYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSS-EEEEEECC---CCHHHHSS
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCC-eEEEEEeCCHHHHHHHHhc
Confidence 3589997 799999999999999999999999887543 4999999999998877553
No 400
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.76 E-value=0.15 Score=44.40 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=44.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+.++|+ +|+.+...+|.++|+.||.| +|...- ...|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 4567776 99999999999999999964 333322 3469999999999999998775
No 401
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=93.26 E-value=0.11 Score=35.98 Aligned_cols=72 Identities=21% Similarity=0.313 Sum_probs=49.2
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceE-EEEEe--------------CC---CCcEEEEEecChhhHHHHHHHhCCc
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSR--------------DS---EGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~-~~~~~--------------~~---~~g~~~v~f~~~~~a~~a~~~l~~~ 185 (270)
...|.|.+.|+... ..+.+.|++||.|.. ..... -+ ..+...|+|++..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 35678888876654 556688999998866 21111 01 12478999999999999999 7777
Q ss_pred cccCccCCceeeeecC
Q 024269 186 EFRNPWARGRITVKRY 201 (270)
Q Consensus 186 ~~~~~~~~~~i~v~~~ 201 (270)
.+. |.-|-|...
T Consensus 85 ii~----G~mIGV~Py 96 (132)
T 3p3d_A 85 VFN----GVLLGVIPY 96 (132)
T ss_dssp EET----TEECEEEEC
T ss_pred EeC----cEEEEEEEC
Confidence 777 554545443
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=89.90 E-value=1.5 Score=27.03 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=44.1
Q ss_pred eEEEcCCC-CCCCHHHHHHHHhccC-----ceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecC
Q 024269 8 TIYVGNLP-SDIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 8 ~l~v~nL~-~~~t~~~l~~~F~~~G-----~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~ 81 (270)
+|+|..=- ..+.+.+|..++..-+ .|-.|.+. -.|.||+-... .|..+++.|++..+.|+.+.|+.++
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 56664222 2378888888887544 46667775 35899998765 5778888899999999999998764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=87.87 E-value=3.7 Score=26.00 Aligned_cols=69 Identities=17% Similarity=0.190 Sum_probs=53.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEe
Q 024269 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 79 (270)
..++-|.|-|||..+-..++.-.....|---.|... -|.|.|.|.+.++-..|+..|-+. ++.+|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 567889999999999999988888888866667665 578999999999999998765221 234555554
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.21 E-value=2.3 Score=36.87 Aligned_cols=55 Identities=18% Similarity=0.226 Sum_probs=44.6
Q ss_pred ceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCC
Q 024269 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 125 ~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 184 (270)
..++|+ +|..+...+|.++|+.||.+ .+.++.+. .|||.|.+.+.|..+++.++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 455555 89999999999999999954 45555553 899999999999999998864
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=75.23 E-value=13 Score=23.49 Aligned_cols=57 Identities=14% Similarity=0.281 Sum_probs=47.5
Q ss_pred cceEEecCCCCCCCHHHHHHHHHHhCCceEEEEEeCCCCcEEEEEecChhhHHHHHHHhCC
Q 024269 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 124 ~~~l~v~~l~~~~~~~~l~~~f~~~g~i~~~~~~~~~~~g~~~v~f~~~~~a~~a~~~l~~ 184 (270)
.+-+.|-|+|..+-..++--.....|.--.|..+. |.|.|.|.+.++..-|+.+|-+
T Consensus 12 nclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 12 NCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHHEE
T ss_pred CcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHHHh
Confidence 46788999999999998877777788777787766 5799999999999999988743
No 406
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=68.96 E-value=18 Score=22.82 Aligned_cols=54 Identities=9% Similarity=0.183 Sum_probs=38.1
Q ss_pred EEcCCCCCCCHHHHHHHHhc-cC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHH
Q 024269 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+-.+...++..+|++.++. || .|..|..........-|||+.....+|.....
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 33456788999999998886 55 66666664433334469999998888777544
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=65.06 E-value=9.4 Score=27.65 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=37.5
Q ss_pred eEEEcCCCCC---------CCHHHHHHHH--hccCceEEEEEecCCCCCceEEEEEccH-HHHHHHHH
Q 024269 8 TIYVGNLPSD---------IREYEVEDLF--YKYGRILDIELKIPPRPPCYCFVEFENA-RDAEDAIR 63 (270)
Q Consensus 8 ~l~v~nL~~~---------~t~~~l~~~F--~~~G~i~~~~~~~~~~~~g~afV~f~~~-~~a~~A~~ 63 (270)
++.|-|+|.. .+..+|.+.| ..|.++.-..+.-.....|+|.|+|... .--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 3556688872 4457899977 8998876555544445578999999753 33344554
No 408
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=60.35 E-value=23 Score=22.30 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=37.3
Q ss_pred EEcCCCCCCCHHHHHHHHhc-cC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHH
Q 024269 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+-.++..++..+|++.++. || +|..|..........-|||+.....+|.....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 34457789999999998885 55 66666664433333459999988777655443
No 409
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=55.32 E-value=2.2 Score=30.24 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=18.9
Q ss_pred HHHHHHHhccCceEEEEEecCCCCCceEEEEEc
Q 024269 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 21 ~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~ 53 (270)
+|+.++|...|.|+-+... +||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 4666778888888766543 899999976
No 410
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.78 E-value=7.9 Score=22.94 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=13.3
Q ss_pred CceEEEEEecCCCCCceEEEEEccH
Q 024269 31 GRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 31 G~i~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|+|..|.. .+..|||.|+|.
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTT
T ss_pred eEEEEEec-----CCcEEEEEEccC
Confidence 45555543 267899999864
No 411
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=46.84 E-value=11 Score=22.34 Aligned_cols=12 Identities=33% Similarity=0.711 Sum_probs=9.7
Q ss_pred CCceEEEEEccH
Q 024269 44 PPCYCFVEFENA 55 (270)
Q Consensus 44 ~~g~afV~f~~~ 55 (270)
..+.|+|.|.+.
T Consensus 40 ~~gtC~V~F~D~ 51 (66)
T 2eqj_A 40 LKQSCFIIFEDS 51 (66)
T ss_dssp TTTEEEEEETTT
T ss_pred CCcEEEEEEccC
Confidence 378999999864
No 412
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=46.60 E-value=11 Score=23.01 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=13.4
Q ss_pred CceEEEEEecCCCCCceEEEEEccH
Q 024269 31 GRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 31 G~i~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|+|..|.. .+..|+|.|.|.
T Consensus 45 GTI~kV~~-----~~e~ClV~F~D~ 64 (79)
T 2m0o_A 45 GTIKKVDS-----AREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEET-----TTTEEEEEETTS
T ss_pred EEEEEecc-----CCCEEEEEEcCC
Confidence 55555543 267899999874
No 413
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=45.48 E-value=44 Score=19.48 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=43.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhc
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..++.|.++.-.-=...|.+.+.. ..|..+.+... .+.+.|+|.+.++...+++.+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHc
Confidence 457889999888888889999999 88888888533 456788888667777777743
No 414
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=45.18 E-value=48 Score=23.31 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=35.1
Q ss_pred CCCCCCCHHHHHHHHhc-cC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHH
Q 024269 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-+...++..+|.+.++. || .|..|..........-|||.+....+|.....
T Consensus 93 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 93 YVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 46778999999988885 45 56666664332234459999987777766443
No 415
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=45.04 E-value=51 Score=22.95 Aligned_cols=54 Identities=17% Similarity=0.300 Sum_probs=36.2
Q ss_pred EEcCCCCCCCHHHHHHHHhc-cC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHH
Q 024269 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+--+...++..+|.+.++. || .|..|..........-|||.+....+|.....
T Consensus 82 ~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 82 LVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 33346778999999988875 55 66666664332234459999988777766443
No 416
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=44.28 E-value=51 Score=23.39 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=36.9
Q ss_pred EEcCCCCCCCHHHHHHHHhc-cC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHH
Q 024269 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~v~nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+-.++..++..+|.+.++. || .|..|..........-|||.+....+|.....
T Consensus 96 yvF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 96 LVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 33456778999999998885 55 66777664332234459999988877665544
No 417
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=41.52 E-value=42 Score=23.68 Aligned_cols=52 Identities=15% Similarity=0.151 Sum_probs=35.6
Q ss_pred cCCCCCCCHHHHHHHHhc-cC-ceEEEEEecCCCCCceEEEEEccHHHHHHHHH
Q 024269 12 GNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 12 ~nL~~~~t~~~l~~~F~~-~G-~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-.+...++..+|.+.++. || .|..|..........-|||.+....+|.....
T Consensus 94 F~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 94 FIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 346678888899888875 45 56666664433334469999998877776544
No 418
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=38.18 E-value=38 Score=22.27 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=26.4
Q ss_pred eEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCc
Q 024269 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 33 i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~ 69 (270)
|..+.. .+..+||.|||=.++.++..|+..+.+..
T Consensus 41 I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 41 IKSVVA--PEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCEEEE--CTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred eEEEEe--cCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 444433 34569999999999999999998665543
No 419
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=37.44 E-value=78 Score=20.04 Aligned_cols=55 Identities=11% Similarity=-0.016 Sum_probs=36.3
Q ss_pred EEEcCCCCCCCHHHHHHHHhccCce---EEEEEecCCCCCceEEEEEccHHHHHHHHHhc
Q 024269 9 IYVGNLPSDIREYEVEDLFYKYGRI---LDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 9 l~v~nL~~~~t~~~l~~~F~~~G~i---~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
|.+-.+|..++-++|.+.+...-.+ ..+.++.-... | -+|++.+.++-+.|+..+
T Consensus 17 i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEe-G-D~itisSd~EL~eAl~l~ 74 (89)
T 1vd2_A 17 IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEE-G-DPCTVSSQLELEEAFRLY 74 (89)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSS-S-CCEECCSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCC-C-CcccccCHHHHHHHHHHH
Confidence 4555678899999988777642222 33444332221 2 479999999999999844
No 420
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=37.13 E-value=45 Score=28.16 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=40.8
Q ss_pred EEEcCCCCCC----CHHHHHHHHhccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeE
Q 024269 9 IYVGNLPSDI----REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 9 l~v~nL~~~~----t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 74 (270)
-+||||..-. ....+.++..+||+|..+.+- +.-+|...+++.|+.++. -++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 4678876432 135677888899999888872 345677789999999987 3445554443
No 421
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=36.58 E-value=80 Score=19.94 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=25.5
Q ss_pred eEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCC
Q 024269 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 33 i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g 67 (270)
|..+.+. ....||.||++...++...++..+.|
T Consensus 40 i~~v~vP--~~fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 40 VYSILAS--ESLKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp EEEEEEC--TTSTTEEEEEESSHHHHHHHHTTCTT
T ss_pred EEEEEEe--cccCCEEEEEEecchhHHHHHHCCCC
Confidence 5555543 24689999999999998888887776
No 422
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=36.14 E-value=22 Score=20.46 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=12.9
Q ss_pred CceEEEEEecCCCCCceEEEEEccH
Q 024269 31 GRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 31 G~i~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|+|..|.. .+..|+|.|.|.
T Consensus 22 GtI~~V~~-----~~~~clV~F~D~ 41 (58)
T 4hcz_A 22 GTIKKVDS-----AREVCLVQFEDD 41 (58)
T ss_dssp EEEEEEET-----TTTEEEEEETTS
T ss_pred EEEEEEec-----CCCEEEEEEcCC
Confidence 45555433 256899999874
No 423
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=35.74 E-value=20 Score=28.21 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEE
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~ 38 (270)
..+.|+|||++++..-|.+++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46789999999999999999986555555444
No 424
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=34.71 E-value=35 Score=26.68 Aligned_cols=29 Identities=31% Similarity=0.450 Sum_probs=23.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEE
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDI 36 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~ 36 (270)
..+.|+|||++++..-|.+++.. +.+..+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEE
Confidence 46789999999999999999987 555443
No 425
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=32.02 E-value=71 Score=17.99 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=39.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEc---cHHHHHHHHH
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE---NARDAEDAIR 63 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~---~~~~a~~A~~ 63 (270)
.++.|.|+.-..=...|.+.+.....|..+.+... .+-+.|+|. +.++...++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCHHHHHHHHH
Confidence 46788888887777889999999888888888543 456888884 3445555665
No 426
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=30.51 E-value=1e+02 Score=22.23 Aligned_cols=50 Identities=16% Similarity=0.224 Sum_probs=33.1
Q ss_pred ceEEecCCCC-C--------CCHHHHHHHH--HHhCCceEEEEEeCCC-CcEEEEEecChhh
Q 024269 125 YRVIVRGLPS-S--------ASWQDLKDHM--RKAGDVCFAEVSRDSE-GTYGVVDYTNPED 174 (270)
Q Consensus 125 ~~l~v~~l~~-~--------~~~~~l~~~f--~~~g~i~~~~~~~~~~-~g~~~v~f~~~~~ 174 (270)
..+.|.|+|. . ....+|.+.| ..|.++.-..+..... .|++.|+|.+--.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~ 74 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWN 74 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChH
Confidence 4667778876 2 3457899977 8888876544443332 2689999987543
No 427
>2jrh_A Mitogen-activated protein kinase kinase kinase 3; kinase signaling domain, transferase; NMR {Homo sapiens} PDB: 2pph_A
Probab=29.74 E-value=97 Score=19.54 Aligned_cols=64 Identities=20% Similarity=0.184 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHh-ccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcCCCccCCeEEEEEecCC
Q 024269 13 NLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 13 nL~~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~~~~ 82 (270)
.++..+.-++|.+-.. .||.-.++.... .--.|-..+++|.++|++.|+- ..+=+.|+|-...+
T Consensus 19 ~f~RPvkf~dl~qkv~~afGq~ldl~y~n-----nEL~iPL~~Q~DLDkAvelLDr-s~~mkSLRIlL~~~ 83 (94)
T 2jrh_A 19 AFSRPVKYEDVEHKVTTVFGQPLDLHYMN-----NELSILLKNQDDLDKAIDILDR-SSSMKSLRILLLSQ 83 (94)
T ss_dssp EECSSCCHHHHHHHHHHHHCSSEEEEEEC-----SSCEEECCSHHHHHHHHHHHHH-STTTTEEEEEEEEC
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEec-----ceeEEeccCHHHHHHHHHHhcc-CccccceEEEEEcC
Confidence 4566788888877665 689888877652 2357888999999999997653 33334555555443
No 428
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=29.09 E-value=32 Score=15.44 Aligned_cols=13 Identities=38% Similarity=0.621 Sum_probs=10.1
Q ss_pred CHHHHHHHHhccC
Q 024269 19 REYEVEDLFYKYG 31 (270)
Q Consensus 19 t~~~l~~~F~~~G 31 (270)
.-.+++++|.++|
T Consensus 13 aikqvkklfkkwg 25 (26)
T 1ytr_A 13 AIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcC
Confidence 3467889999887
No 429
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=28.51 E-value=1.1e+02 Score=19.15 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=41.5
Q ss_pred eEEecCCCCCCCHHHHHHHHHH-hC-CceEEEEEeCCCC-cEEEEEecChhhHHHHHHHh
Q 024269 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l 182 (270)
..++.......+..+|++.++. |+ .|..+..+..+.+ ..|+|....-.+|.....++
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 3455556788999999999987 55 5666666554433 38999999988888766554
No 430
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=28.17 E-value=52 Score=29.49 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=39.0
Q ss_pred CCCCCCCHHHHHHHHh----ccCceEEEEEecC--CCCCceEEEEEccHHHHHHHHHhc
Q 024269 13 NLPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 13 nL~~~~t~~~l~~~F~----~~G~i~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..+.+.+--||..+|- .+|-|..+.|..- .....+++|.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 4455555567888883 6889999888432 333567889999999999988655
No 431
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=28.15 E-value=39 Score=21.72 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=16.1
Q ss_pred EcCCCCCCCHHHHHHHHh-ccCc
Q 024269 11 VGNLPSDIREYEVEDLFY-KYGR 32 (270)
Q Consensus 11 v~nL~~~~t~~~l~~~F~-~~G~ 32 (270)
|.+|.+.+|..||...+. ..|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 457889999999988554 4454
No 432
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=27.96 E-value=51 Score=25.37 Aligned_cols=30 Identities=30% Similarity=0.304 Sum_probs=23.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEEE
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDI 36 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~ 36 (270)
..+.|+|||++++...|.+++.....+..+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 358899999999999999998854444443
No 433
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=27.52 E-value=25 Score=27.28 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=24.5
Q ss_pred eEEEcCCCCCCCHHHHHHHHhccCceEEEEE
Q 024269 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~ 38 (270)
...|+|||++++...|..++...+.+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 4589999999999999999987665554433
No 434
>2npt_B Mitogen-activated protein kinase kinase kinase 2; MAP2K5, MEK5, MKK PRKMK5, MAP kinase kinase 5, PHOX, PHOX-domain; 1.75A {Homo sapiens} SCOP: d.15.2.2
Probab=27.03 E-value=1.1e+02 Score=19.51 Aligned_cols=49 Identities=12% Similarity=0.253 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHh-ccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC
Q 024269 13 NLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 13 nL~~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.++..+.-++|.+-.. .||.-.++.... ..-.|-..+++|.++|++.|+
T Consensus 35 ~f~RPv~f~el~~kv~~afGq~ldl~y~n-----nEL~iPL~~Q~DLDkAvelLD 84 (100)
T 2npt_B 35 QFPRPVKLEDLRSKAKIAFGQSMDLHYTN-----NELVIPLTTQDDLDKAVELLD 84 (100)
T ss_dssp EECSSCCHHHHHHHHHHHHTSCEEEEEEE-----TTEEEECCCHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEec-----ceeEEecccHHHHHHHHHHhc
Confidence 4566788888877665 689888877652 236788899999999999765
No 435
>2c60_A Human mitogen-activated protein kinase kinase kinase 3 isoform 2; MAP3K3, MAP/ERK kinase kinase 3, MAPKKK3, MEKK3, serine threonine phosphorylation; HET: MSE; 1.25A {Homo sapiens} SCOP: d.15.2.2 PDB: 2o2v_B
Probab=26.70 E-value=98 Score=20.10 Aligned_cols=49 Identities=20% Similarity=0.228 Sum_probs=36.8
Q ss_pred CCCCCCCHHHHHHHHh-ccCceEEEEEecCCCCCceEEEEEccHHHHHHHHHhcC
Q 024269 13 NLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 13 nL~~~~t~~~l~~~F~-~~G~i~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.++..+.-++|.+-.. .||.-.++.... .--.|-..+++|.++|++.|+
T Consensus 46 qf~RPvkf~dl~qkv~~afGq~ldl~y~n-----nEL~IPL~~Q~DLDkAvelLD 95 (111)
T 2c60_A 46 AFSRPVKYEDVEHKVTTVFGQPLDLHYMN-----NELSILLKNQDDLDKAIDILD 95 (111)
T ss_dssp EECSSCCHHHHHHHHHHHHSSCCEEEEEC-----SSCEEECCSHHHHHHHHHHHH
T ss_pred ecCCCccHHHHHHHHHHHhCCeeeeEEec-----ceEEEecccHHHHHHHHHHhc
Confidence 4566778888877665 689888876652 235688889999999999765
No 436
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=26.03 E-value=63 Score=24.03 Aligned_cols=29 Identities=10% Similarity=0.017 Sum_probs=24.8
Q ss_pred CCCCceEEEEEccHHHHHHHHHhcCCCcc
Q 024269 42 PRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 70 (270)
+..+||.|||=.++.++..|++.+.+...
T Consensus 146 d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~ 174 (200)
T 2exu_A 146 DNYTGRIYIEAPKQSVIEKFCNGVPDIYI 174 (200)
T ss_dssp TTSTTEEEEECSCHHHHHHHHTTCTTEEE
T ss_pred CCCcEEEEEEECCHHHHHHHHhhhhhhhc
Confidence 45699999999999999999998877643
No 437
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=25.77 E-value=66 Score=20.82 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=18.5
Q ss_pred CCHHHHHHHHhccCceEEEEEe
Q 024269 18 IREYEVEDLFYKYGRILDIELK 39 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~i~~~~~~ 39 (270)
.+++.|.++|+.+|.|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4677899999999999887774
No 438
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=25.50 E-value=43 Score=27.40 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=19.7
Q ss_pred eEEEcCCCCCCCHHHHHHHHhc
Q 024269 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~l~v~nL~~~~t~~~l~~~F~~ 29 (270)
...|+|||++++..-|.+++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999998875
No 439
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=24.99 E-value=1e+02 Score=17.59 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=42.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEc----cHHHHHHHHHhc
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE----NARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 65 (270)
..++.|.|+....=...|.+.+.....|..+.+... .+.+.|+|. +.++...+++.+
T Consensus 3 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL---QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG---GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 356888888887777889999998888888888543 456889985 556677777643
No 440
>1x8d_A Hypothetical protein YIIL; mutarotase, L-rhamnose, biosynthetic protein; HET: RNS; 1.80A {Escherichia coli} SCOP: d.58.4.21
Probab=24.71 E-value=1.4e+02 Score=19.33 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=21.7
Q ss_pred HHHHHHhccCceEEEEEecCCC-CCceEEEEEcc
Q 024269 22 EVEDLFYKYGRILDIELKIPPR-PPCYCFVEFEN 54 (270)
Q Consensus 22 ~l~~~F~~~G~i~~~~~~~~~~-~~g~afV~f~~ 54 (270)
+|.+.+..+| |.+..|...+. ..-|++++..+
T Consensus 28 Ev~~~L~~aG-i~~ysIfl~~~~~~LF~~~E~~d 60 (104)
T 1x8d_A 28 ELEAVLKSHG-AHNYAIYLDKARNLLFAMVEIES 60 (104)
T ss_dssp HHHHHHHHTT-EEEEEEEEETTTTEEEEEEEESC
T ss_pred HHHHHHHHcC-CeEEEEEEECCCCeEEEEEEEcC
Confidence 4666777777 66666654432 34689999988
No 441
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.10 E-value=76 Score=18.46 Aligned_cols=13 Identities=31% Similarity=0.631 Sum_probs=10.1
Q ss_pred CCCceEEEEEccH
Q 024269 43 RPPCYCFVEFENA 55 (270)
Q Consensus 43 ~~~g~afV~f~~~ 55 (270)
..+..|||.|+|.
T Consensus 33 ~~~~~ClV~FeD~ 45 (63)
T 2e5q_A 33 SSKQSCLVTFEDN 45 (63)
T ss_dssp STTSEEEEEETTS
T ss_pred cCCCEEEEEEccC
Confidence 3477899999864
No 442
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=23.73 E-value=27 Score=21.14 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=14.4
Q ss_pred CHHHHHHHHhccCceEEE
Q 024269 19 REYEVEDLFYKYGRILDI 36 (270)
Q Consensus 19 t~~~l~~~F~~~G~i~~~ 36 (270)
|--||.+++.+||.|+.+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 556899999999987653
No 443
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=23.50 E-value=51 Score=25.31 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=22.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHHhccCceEE
Q 024269 7 RTIYVGNLPSDIREYEVEDLFYKYGRILD 35 (270)
Q Consensus 7 ~~l~v~nL~~~~t~~~l~~~F~~~G~i~~ 35 (270)
..+.|+|||++++..-|..++.....+..
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~ 124 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPL 124 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCce
Confidence 35789999999999999999986544333
No 444
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=23.41 E-value=1.3e+02 Score=18.23 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=40.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEcc----HHHHHHHHHhc
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN----ARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 65 (270)
..++.|.++....-...|...+.....|..+.+... .+.+.|+|.. .++...++..+
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~---~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE---NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT---TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc---CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 446778887766666778888998888888888543 4678888853 45556666644
No 445
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=22.82 E-value=2e+02 Score=20.20 Aligned_cols=57 Identities=16% Similarity=0.088 Sum_probs=39.8
Q ss_pred eEEecCCCCCCCHHHHHHHHHH-hC-CceEEEEEeCCCC-cEEEEEecChhhHHHHHHHh
Q 024269 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l 182 (270)
..++..+....+..+|++.++. |+ .|..+..+..+.+ .-|||.+..-.+|.+....+
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 149 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANKI 149 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 4455556778888899888877 56 5666666554443 38999999888877665443
No 446
>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A
Probab=22.54 E-value=1.1e+02 Score=16.91 Aligned_cols=57 Identities=9% Similarity=0.107 Sum_probs=39.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHHhccCceEEEEEecCCCCCceEEEEEcc---HHHHHHHHHhc
Q 024269 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN---ARDAEDAIRGR 65 (270)
Q Consensus 6 ~~~l~v~nL~~~~t~~~l~~~F~~~G~i~~~~~~~~~~~~g~afV~f~~---~~~a~~A~~~l 65 (270)
..++.|.++....-...|...+.....|..+.+... .+.+.|.|.. .++...++..+
T Consensus 4 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~~~ 63 (71)
T 2xmw_A 4 TINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVERA 63 (71)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEEC---CHHHHHHHHHHH
T ss_pred EEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEcc---CCEEEEEECCCCCHHHHHHHHHHc
Confidence 356788888776666778889998888888888543 4578888864 34444555533
No 447
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=28.19 E-value=18 Score=23.84 Aligned_cols=50 Identities=12% Similarity=0.082 Sum_probs=31.4
Q ss_pred CCHHHHHHHHhccCceEEEEEecCCCC--Cce--EEEEEccHHHHHHHHHhcCCC
Q 024269 18 IREYEVEDLFYKYGRILDIELKIPPRP--PCY--CFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 18 ~t~~~l~~~F~~~G~i~~~~~~~~~~~--~g~--afV~f~~~~~a~~A~~~l~g~ 68 (270)
.++++|..+..+.+ +..+.+..+... .-| -|=.|.+.++|.+|+..|...
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~ 87 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPAD 87 (106)
Confidence 45667777777776 344555443211 112 223789999999999988643
No 448
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=22.02 E-value=85 Score=21.60 Aligned_cols=44 Identities=11% Similarity=0.157 Sum_probs=30.2
Q ss_pred EcCCCCCCCHHHHHHHHh-ccC--ceEEEEE-ec-----------C-CCCCceEEEEEcc
Q 024269 11 VGNLPSDIREYEVEDLFY-KYG--RILDIEL-KI-----------P-PRPPCYCFVEFEN 54 (270)
Q Consensus 11 v~nL~~~~t~~~l~~~F~-~~G--~i~~~~~-~~-----------~-~~~~g~afV~f~~ 54 (270)
|-.+..-++++++.+++. .++ .|..+.+ +. + ....+|.|+.|.+
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~ 127 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTT 127 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTT
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeC
Confidence 566777799999999995 444 6777666 11 1 2345788888865
No 449
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.87 E-value=2.1e+02 Score=19.91 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=40.7
Q ss_pred eEEecCCCCCCCHHHHHHHHHH-hC-CceEEEEEeCCCC-cEEEEEecChhhHHHHHHHh
Q 024269 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l 182 (270)
..++..+....+..+|++.++. |+ .|..+..+..+.+ .-|||.+..-.+|.+...++
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnki 139 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANRI 139 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHhh
Confidence 4555566788899999988877 56 5666766555443 37999998888877765544
No 450
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=21.74 E-value=53 Score=28.39 Aligned_cols=41 Identities=22% Similarity=0.383 Sum_probs=28.0
Q ss_pred HHHHHH--hccCceEEEEEecCCCC--CceEEEEEccHHHHHHHH
Q 024269 22 EVEDLF--YKYGRILDIELKIPPRP--PCYCFVEFENARDAEDAI 62 (270)
Q Consensus 22 ~l~~~F--~~~G~i~~~~~~~~~~~--~g~afV~f~~~~~a~~A~ 62 (270)
+|..+| +.+|-|..+.+.....+ ...+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 456677 36899999888543323 345789999988876644
No 451
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=21.03 E-value=2.2e+02 Score=19.96 Aligned_cols=57 Identities=12% Similarity=0.094 Sum_probs=40.5
Q ss_pred eEEecCCCCCCCHHHHHHHHHH-hC-CceEEEEEeCCCC-cEEEEEecChhhHHHHHHHh
Q 024269 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~~l~~~~~~~~l~~~f~~-~g-~i~~~~~~~~~~~-g~~~v~f~~~~~a~~a~~~l 182 (270)
..++..+....+..+|++.++. |+ .|..+..+..+.+ .-|||.+..-.+|.+...++
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnki 147 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANKI 147 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHhh
Confidence 3455556788899999988877 56 5666766555443 38999998888887765544
No 452
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=20.80 E-value=1.1e+02 Score=23.21 Aligned_cols=75 Identities=16% Similarity=0.245 Sum_probs=43.4
Q ss_pred CceEEEcCCCCCCC--HHHHHHHHhc-----cCc--------eEEEEEec---C--CCCCceEEEEEccHHHHH---HHH
Q 024269 6 SRTIYVGNLPSDIR--EYEVEDLFYK-----YGR--------ILDIELKI---P--PRPPCYCFVEFENARDAE---DAI 62 (270)
Q Consensus 6 ~~~l~v~nL~~~~t--~~~l~~~F~~-----~G~--------i~~~~~~~---~--~~~~g~afV~f~~~~~a~---~A~ 62 (270)
-++|.|-|||.... +.-+..+|.. |.. |..+.-.. . ........|.|....+=+ +|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 47899999999876 4434444432 332 22222210 0 112345778887666544 444
Q ss_pred HhcCCCccCCeEEEEEec
Q 024269 63 RGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 63 ~~l~g~~~~g~~l~v~~~ 80 (270)
...+...+.|.+|.+...
T Consensus 132 R~k~~vtykG~pIrlsaD 149 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVD 149 (233)
T ss_dssp HTTSCEEETTEEEEEEEC
T ss_pred HHhcccccCCCceEEeCC
Confidence 445678889999998653
No 453
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=20.15 E-value=72 Score=16.36 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=12.5
Q ss_pred CCCCHHHHHHHHhcc
Q 024269 16 SDIREYEVEDLFYKY 30 (270)
Q Consensus 16 ~~~t~~~l~~~F~~~ 30 (270)
.+++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 468999999999864
Done!