BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024270
(270 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S31|A Chain A, Crystal Structure Analysis Of The Human Tub Protein
(isoform A) Spanning Residues 289 Through 561
Length = 273
Score = 77.8 bits (190), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 28/141 (19%)
Query: 100 QPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCTD 151
+P P+ ++C I R++ TY L+L +DGK FLLA RK +++ ++
Sbjct: 24 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 78
Query: 152 YIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVS 210
Y+IS+ D+S+G +Y+GKLRSN +GTKF VYD G P + T T L+Q
Sbjct: 79 YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ-- 132
Query: 211 PRIPFGNYSVAHISYELNVLG 231
+A + YE NVLG
Sbjct: 133 --------ELAAVCYETNVLG 145
>pdb|3C5N|A Chain A, Structure Of Human Tulp1 In Complex With Ip3
pdb|3C5N|B Chain B, Structure Of Human Tulp1 In Complex With Ip3
Length = 246
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 98 VKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 156
V +P P+ ++C + R++ +Y S L + K FLLA RK +R+ +Y+IS+
Sbjct: 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 64
Query: 157 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 215
++S+G ++GKLRSN LG +F V+D GQ P G ST +A+L+Q
Sbjct: 65 DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQRGY------STNVASLRQ------- 111
Query: 216 GNYSVAHISYELNVLGSR 233
+A + YE NVLG R
Sbjct: 112 ---ELAAVIYETNVLGFR 126
>pdb|2FIM|A Chain A, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
pdb|2FIM|B Chain B, Structure Of The C-Terminal Domain Of Human Tubby-Like
Protein 1
Length = 276
Score = 77.8 bits (190), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 49/138 (35%), Positives = 75/138 (54%), Gaps = 18/138 (13%)
Query: 98 VKQPGPRDYLLQCFIKRNRSTQTYHLYLSLTNALADDGK-FLLAARKCRRATCTDYIISL 156
V +P P+ ++C + R++ +Y S L + K FLLA RK +R+ +Y+IS+
Sbjct: 29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLDTEKKVFLLAGRKRKRSKTANYLISI 88
Query: 157 HSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVSPRIPF 215
++S+G ++GKLRSN LG +F V+D GQ P R ST +A+L+Q
Sbjct: 89 DPTNLSRGGENFIGKLRSNLLGNRFTVFDNGQNPQ------RGYSTNVASLRQ------- 135
Query: 216 GNYSVAHISYELNVLGSR 233
+A + YE NVLG R
Sbjct: 136 ---ELAAVIYETNVLGFR 150
>pdb|1I7E|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein Bound To
Phosphatidylinositol 4,5-Bis-Phosphate
Length = 265
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 28/141 (19%)
Query: 100 QPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCTD 151
+P P+ ++C I R++ TY L+L +DGK FLLA RK +++ ++
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 152 YIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVS 210
Y+IS+ D+S+G +Y+GKLRSN +GTKF VYD G P + T T L+Q
Sbjct: 71 YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ-- 124
Query: 211 PRIPFGNYSVAHISYELNVLG 231
+A + YE NVLG
Sbjct: 125 --------ELAAVCYETNVLG 137
>pdb|1C8Z|A Chain A, C-Terminal Domain Of Mouse Brain Tubby Protein
Length = 265
Score = 77.4 bits (189), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 75/141 (53%), Gaps = 28/141 (19%)
Query: 100 QPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGK--FLLAARKCRRATCTD 151
+P P+ ++C I R++ TY L+L +DGK FLLA RK +++ ++
Sbjct: 16 RPAPQGITIKCRITRDKKGMDRGMFPTYFLHLD-----REDGKKVFLLAGRKRKKSKTSN 70
Query: 152 YIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYD-GQPPHAGAKMTRSRSTRLANLKQVS 210
Y+IS+ D+S+G +Y+GKLRSN +GTKF VYD G P + T T L+Q
Sbjct: 71 YLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLESGT----LRQ-- 124
Query: 211 PRIPFGNYSVAHISYELNVLG 231
+A + YE NVLG
Sbjct: 125 --------ELAAVCYETNVLG 137
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 31.6 bits (70), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 70/172 (40%), Gaps = 32/172 (18%)
Query: 121 YHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNF---L 177
+H + AD F+ +C A+ ++ H D + G+ Y L + + L
Sbjct: 65 WHGFFQAGTNWADGPAFV---NQCPIASGHSFLYDFHVPDQA-GTFWYHSHLSTQYCDGL 120
Query: 178 GTKFIVYDGQPPHAGAKMTRSRSTRLA------NLKQVSPRIPFG---------NYSVAH 222
F+VYD + PHA + ST + ++ PR P G S +
Sbjct: 121 RGPFVVYDPKDPHASRYDVDNESTVITLTDWYHTAARLGPRFPLGADATLINGLGRSAST 180
Query: 223 ISYELNVL----GSRYKFDFCPLLLLRCNQE---SINYYRIFVNQLSQLNSK 267
+ L V+ G RY+F L+ + C+ SI+ + + V ++ +NS+
Sbjct: 181 PTAALAVINVQHGKRYRFR---LVSISCDPNYTFSIDGHNLTVIEVDGINSQ 229
>pdb|4FWE|A Chain A, Native Structure Of Lsd2 /aof1/kdm1b In Spacegroup Of
C2221 At 2.13a
pdb|4FWF|A Chain A, Complex Structure Of Lsd2/aof1/kdm1b With H3k4 Mimic
pdb|4FWJ|A Chain A, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
pdb|4FWJ|B Chain B, Native Structure Of Lsd2/aof1/kdm1b In Spacegroup Of I222
At 2.9a
Length = 796
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 72 CRSWRQITKEIVKVPELS 89
CR WRQ+TKEI P+++
Sbjct: 121 CRKWRQLTKEIQLTPQIA 138
>pdb|4GU1|A Chain A, Crystal Structure Of Lsd2
pdb|4GU1|B Chain B, Crystal Structure Of Lsd2
Length = 784
Score = 29.3 bits (64), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 72 CRSWRQITKEIVKVPELS 89
CR WRQ+TKEI P+++
Sbjct: 109 CRKWRQLTKEIQLTPQIA 126
>pdb|4GUR|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group P21
pdb|4GUS|A Chain A, Crystal Structure Of Lsd2-npac With H3 In Space Group
P3221
pdb|4GUT|A Chain A, Crystal Structure Of Lsd2-npac
pdb|4GUU|A Chain A, Crystal Structure Of Lsd2-npac With Tranylcypromine
pdb|4GU0|A Chain A, Crystal Structure Of Lsd2 With H3
pdb|4GU0|B Chain B, Crystal Structure Of Lsd2 With H3
pdb|4GU0|C Chain C, Crystal Structure Of Lsd2 With H3
pdb|4GU0|D Chain D, Crystal Structure Of Lsd2 With H3
pdb|4HSU|A Chain A, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group
P21
Length = 776
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 72 CRSWRQITKEIVKVPELS 89
CR WRQ+TKEI P+++
Sbjct: 101 CRKWRQLTKEIQLTPQIA 118
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 30/125 (24%)
Query: 165 SSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLA------NLKQVSPRIPFG-- 216
S+ Y LR F+VYD PHA + T + ++ PR P G
Sbjct: 113 STQYCDGLRG-----PFVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGGAD 167
Query: 217 -----------NYSVAHISYELNVLGSRYKFDFCPLLLLRCNQE---SINYYRIFVNQLS 262
+ SVA +S G RY+F L+ L CN SI+ + + + ++
Sbjct: 168 ATLINGKGRAPSDSVAELSVIKVTKGKRYRFR---LVSLSCNPNHTFSIDGHNLTIIEVD 224
Query: 263 QLNSK 267
+NS+
Sbjct: 225 SVNSQ 229
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 30/125 (24%)
Query: 165 SSTYLGKLRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLA------NLKQVSPRIPFG-- 216
S+ Y LR F+VYD PHA + T + ++ PR P G
Sbjct: 113 STQYCDGLRG-----PFVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKLGPRFPGGAD 167
Query: 217 -----------NYSVAHISYELNVLGSRYKFDFCPLLLLRCNQE---SINYYRIFVNQLS 262
+ SVA +S G RY+F L+ L CN SI+ + + + ++
Sbjct: 168 ATLINGKGRAPSDSVAELSVIKVTKGKRYRFR---LVSLSCNPNHTFSIDGHNLTIIEVD 224
Query: 263 QLNSK 267
+NS+
Sbjct: 225 SVNSQ 229
>pdb|4GUA|A Chain A, Alphavirus P23pro-Zbd
pdb|4GUA|B Chain B, Alphavirus P23pro-Zbd
pdb|4GUA|C Chain C, Alphavirus P23pro-Zbd
Length = 670
Score = 27.3 bits (59), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 151 DYIISLHSDDM---SKGSSTYLGKLRSNFLGTKF 181
D ++ +H D KG ST GKL S F GTKF
Sbjct: 516 DELVWIHPDSCLKGRKGFSTTKGKLYSYFEGTKF 549
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,739,398
Number of Sequences: 62578
Number of extensions: 294158
Number of successful extensions: 547
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 529
Number of HSP's gapped (non-prelim): 19
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)