Query 024270
Match_columns 270
No_of_seqs 194 out of 295
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 03:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2502 Tub family proteins [G 100.0 1E-74 2.2E-79 544.6 17.1 210 35-260 43-257 (355)
2 PF01167 Tub: Tub family; Int 100.0 1.4E-47 3.1E-52 347.9 12.1 137 101-250 1-138 (246)
3 PF12937 F-box-like: F-box-lik 98.1 1.1E-06 2.3E-11 60.3 1.1 36 37-80 1-36 (47)
4 PLN03215 ascorbic acid mannose 97.8 1E-05 2.2E-10 78.7 2.2 40 35-81 2-41 (373)
5 PF00646 F-box: F-box domain; 97.8 4.2E-06 9.1E-11 56.9 -0.7 39 36-82 2-40 (48)
6 smart00256 FBOX A Receptor for 97.5 1.8E-05 3.9E-10 51.3 -0.0 33 40-80 1-33 (41)
7 KOG2997 F-box protein FBX9 [Ge 91.6 0.11 2.3E-06 50.6 2.0 97 34-140 101-237 (366)
8 KOG2120 SCF ubiquitin ligase, 87.9 0.15 3.3E-06 49.8 -0.1 68 36-111 97-167 (419)
9 PF12043 DUF3527: Domain of un 63.9 30 0.00065 34.1 7.6 73 105-186 6-108 (346)
10 KOG4341 F-box protein containi 58.4 5.4 0.00012 40.5 1.5 56 35-99 70-125 (483)
11 KOG0274 Cdc4 and related F-box 41.5 6.1 0.00013 40.5 -1.1 40 33-80 104-143 (537)
12 PF04525 Tub_2: Tubby C 2; In 38.5 1E+02 0.0022 26.6 6.1 79 106-187 62-145 (187)
13 PF11038 DGF-1_5: Dispersed ge 37.5 50 0.0011 30.8 4.2 105 57-190 15-126 (278)
14 PF09372 PRANC: PRANC domain; 28.2 32 0.0007 26.8 1.3 21 34-54 69-89 (97)
15 PF03803 Scramblase: Scramblas 26.0 2E+02 0.0044 25.1 6.1 27 162-188 111-139 (221)
16 PRK13890 conjugal transfer pro 25.1 69 0.0015 26.3 2.7 35 37-84 84-118 (120)
17 PF10504 DUF2452: Protein of u 22.0 1.2E+02 0.0025 27.0 3.6 98 41-173 28-129 (159)
No 1
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=100.00 E-value=1e-74 Score=544.58 Aligned_cols=210 Identities=49% Similarity=0.780 Sum_probs=192.2
Q ss_pred CCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhhhcCcccccccccccccccCCCCCceEEEEEEe
Q 024270 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRDYLLQCFIKR 114 (270)
Q Consensus 35 ~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~eiv~~pe~~gk~tFp~sLkqPgPr~~~iQCfI~R 114 (270)
+.|++||||||+|+|+|+|++|+.||+|++||+||+||+.||++++|||++|+.++++|||++|+||||+|.++||+|+|
T Consensus 43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R 122 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR 122 (355)
T ss_pred chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceeeeecccccccC--CCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCCceeeeeeccccccEEEEecCCCCCCC
Q 024270 115 NRSTQTYHLYLSLTNALA--DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGTKFIVYDGQPPHAG 192 (270)
Q Consensus 115 dksg~tY~LYL~l~~~~~--d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~~yvGKLRSNflGTkFtIYD~g~p~~~ 192 (270)
||+|++|+||++|.+++. |++||||||||+||+||+|||||+|++||||++++||||||||||||||||||+|.++
T Consensus 123 dks~~~~~Ly~~l~~~l~~~d~~kfLLaark~rr~~~t~yiiS~d~~~lSr~~~~yvGklRSN~lGTKFtVyD~g~~~-- 200 (355)
T KOG2502|consen 123 DKSGMDRGLYLSLYLHLEREDNKKFLLAARKRRRSKTTNYLISLDPTDLSRGSESYVGKLRSNLLGTKFTVYDNGVNP-- 200 (355)
T ss_pred ccCCCceeeeecccccccccccceeeeeeeeecccccceeEEeccccccccCccceeeeeecccccceEEEecCCCCc--
Confidence 999999999999998753 7899999999999999999999999999999999999999999999999999997432
Q ss_pred CccccccccccccccccCCCCCCcceeEEEEEEecccCCCCCCceeEEEeeccccC---CCcchhhhhhhh
Q 024270 193 AKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQ---ESINYYRIFVNQ 260 (270)
Q Consensus 193 a~~~~~r~~~~~~~k~vsp~~~~~r~ELa~V~Ye~NVLg~rGPRkM~ViiP~~~~~---~~~~~~~~~~~~ 260 (270)
+|+++ ++|.+++|||+|+||+||||+||||||+|+||..... +.++..+.+.++
T Consensus 201 --------~r~~~------~~~~~~~~la~V~Ye~NVLg~rGPRrM~~im~~i~~s~~~~~v~~q~~~~~~ 257 (355)
T KOG2502|consen 201 --------SRRFN------KVPSGRQELAAVIYETNVLGFRGPRRMTVIMPGISPSAPGGRVPVQPENDHP 257 (355)
T ss_pred --------ccccc------cCCcccceeeEEEEeeccccccCCceeEEeccCCCCCCCCCccccccccccc
Confidence 22333 4789999999999999999999999999999964433 344665655555
No 2
>PF01167 Tub: Tub family; InterPro: IPR000007 Tubby, an autosomal recessive mutation, mapping to mouse chromosome 7, was recently found to be the result of a splicing defect in a novel gene with unknown function. This mutation maps to the tub gene [, ]. The mouse tubby mutation is the cause of maturity-onset obesity, insulin resistance and sensory deficits. By contrast with the rapid juvenile-onset weight gain seen in diabetes (db) and obese (ob) mice, obesity in tubby mice develops gradually, and strongly resembles the late-onset obesity observed in the human population. Excessive deposition of adipose tissue culminates in a two-fold increase of body weight. Tubby mice also suffer retinal degeneration and neurosensory hearing loss. The tripartite character of the tubby phenotype is highly similar to human obesity syndromes, such as Alstrom and Bardet-Biedl. Although these phenotypes indicate a vital role for tubby proteins, no biochemical function has yet been ascribed to any family member [], although it has been suggested that the phenotypic features of tubby mice may be the result of cellular apoptosis triggered by expression of the mutated tub gene. TUB is the founding-member of the tubby-like proteins, the TULPs. TULPs are found in multicellular organisms from both the plant and animal kingdoms. Ablation of members of this protein family cause disease phenotypes that are indicative of their importance in nervous-system function and development []. Mammalian TUB is a hydrophilic protein of ~500 residues. The N-terminal (IPR005398 from INTERPRO) portion of the protein is conserved neither in length nor sequence, but, in TUB, contains the nuclear localisation signal and may have transcriptional-activation activity. The C-terminal 250 residues are highly conserved. The C-terminal extremity contains a cysteine residue that might play an important role in the normal functioning of these proteins. The crystal structure of the C-terminal core domain from mouse tubby has been determined to 1.9A resolution. This domain is arranged as a 12-stranded, all anti-parallel, closed beta-barrel that surrounds a central alpha helix, (which is at the extreme carboxyl terminus of the protein) that forms most of the hydrophobic core. Structural analyses suggest that TULPs constitute a unique family of bipartite transcription factors [].; PDB: 3C5N_B 2FIM_A 1I7E_A 1C8Z_A 1S31_A.
Probab=100.00 E-value=1.4e-47 Score=347.87 Aligned_cols=137 Identities=46% Similarity=0.710 Sum_probs=107.9
Q ss_pred CCCCCceEEEEEEeecCCceeeeeccccccc-CCCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCCceeeeeecccccc
Q 024270 101 PGPRDYLLQCFIKRNRSTQTYHLYLSLTNAL-ADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSNFLGT 179 (270)
Q Consensus 101 PgPr~~~iQCfI~Rdksg~tY~LYL~l~~~~-~d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~~yvGKLRSNflGT 179 (270)
|||+|++|||+|+|||+|++|+||+.+...+ .++++|||||||+++++||||+|||+++|+||++++|||||||||+||
T Consensus 1 P~P~~~~vqC~I~R~k~g~~~~lyp~y~l~l~~~~~kfLLaArK~~~s~~s~YiIS~~~~dlsr~s~~yvGKLrsNf~GT 80 (246)
T PF01167_consen 1 PGPRGGPVQCFIRRDKSGLTRGLYPGYYLYLEGENGKFLLAARKRKRSKTSNYIISLDPDDLSRSSNNYVGKLRSNFLGT 80 (246)
T ss_dssp B--TT-EEEEEEEEESTTCCCT---EEEEEEESTTSEEEEEEEEECSSSSEEEEEESSHHHHCTT---ESEEEEE-TTSS
T ss_pred CCCCCcEEEEEEEEECCCCCcccCcEeEeccccCCCcEEEeeeecccCCCcceEEecCCCccccCCCceeeeecccccee
Confidence 8999999999999999998777777666644 489999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCccccccccccccccccCCCCCCcceeEEEEEEecccCCCCCCceeEEEeeccccCCC
Q 024270 180 KFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRCNQES 250 (270)
Q Consensus 180 kFtIYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~~~~r~ELa~V~Ye~NVLg~rGPRkM~ViiP~~~~~~~ 250 (270)
+|||||+|++++.+. ..+|..+..|+|||+|+|++||||+||||||+|+||.......
T Consensus 81 ~F~iyD~g~~~~~~~-------------~~~~~~~~~r~eLa~V~Ye~nvlg~rGPRkM~v~ip~i~~~~~ 138 (246)
T PF01167_consen 81 EFTIYDNGPNPKKSK-------------SISPREPQIRRELAAVSYETNVLGSRGPRKMTVVIPSIPSSGQ 138 (246)
T ss_dssp EEEEEESSB-CCCST-------------CCTSCCSSB--EEEEEEEEE-SSSTTSSEEEEEEEE-B-TTS-
T ss_pred EEEEECCCCCCcccc-------------ccCcCcCcCcceEEEEEEEeccccccCCcEEEEEecCCCcccc
Confidence 999999998776543 2256678899999999999999999999999999998666443
No 3
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=98.09 E-value=1.1e-06 Score=60.29 Aligned_cols=36 Identities=36% Similarity=0.777 Sum_probs=30.6
Q ss_pred CCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (270)
Q Consensus 37 Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ 80 (270)
|..||+|+|.+|+..++. +|+..|+.|||.|+.++.
T Consensus 1 i~~LP~Eil~~If~~L~~--------~dl~~~~~vcr~w~~~~~ 36 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDP--------RDLLRLSLVCRRWRRIAN 36 (47)
T ss_dssp CCCS-HHHHHHHHTTS-H--------HHHHHHTTSSHHHHHHHT
T ss_pred ChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHC
Confidence 789999999999999943 379999999999999884
No 4
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=97.79 E-value=1e-05 Score=78.69 Aligned_cols=40 Identities=33% Similarity=0.658 Sum_probs=37.4
Q ss_pred CCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHh
Q 024270 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (270)
Q Consensus 35 ~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~e 81 (270)
..|+.||+|||+.|..|| |++-|++-.++||++||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhccc
Confidence 469999999999999999 9999999999999999998764
No 5
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=97.75 E-value=4.2e-06 Score=56.88 Aligned_cols=39 Identities=26% Similarity=0.579 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhh
Q 024270 36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI 82 (270)
Q Consensus 36 ~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ei 82 (270)
.|.+||+|++.+|+.+++. +++++|+.||+.|+.+++..
T Consensus 2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence 5889999999999999955 45999999999999988654
No 6
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=97.54 E-value=1.8e-05 Score=51.30 Aligned_cols=33 Identities=39% Similarity=0.836 Sum_probs=29.9
Q ss_pred CCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270 40 LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (270)
Q Consensus 40 lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ 80 (270)
||+|++.+|+.+| +. +|+.+|+.||++|+.++.
T Consensus 1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~ 33 (41)
T smart00256 1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLID 33 (41)
T ss_pred CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhc
Confidence 7999999999999 54 789999999999999874
No 7
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=91.60 E-value=0.11 Score=50.63 Aligned_cols=97 Identities=23% Similarity=0.317 Sum_probs=60.5
Q ss_pred CCCCCC---CCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhh-------hcCccccccccc---------
Q 024270 34 TCCWAN---LPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI-------VKVPELSGYLTF--------- 94 (270)
Q Consensus 34 ~~~Wa~---lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ei-------v~~pe~~gk~tF--------- 94 (270)
|+.|-+ ||+|+|-.||+++-.+. =.-++...||+||+.|+-.+.+= ++-++.++..-=
T Consensus 101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~ 177 (366)
T KOG2997|consen 101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYY 177 (366)
T ss_pred chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHH
Confidence 677765 99999999999995322 13357789999999877655210 122222222111
Q ss_pred ----ccccccCCCC-CceEEEEEEeec---CCc-------------eeeeecccccccCCCCeEEEE
Q 024270 95 ----PISVKQPGPR-DYLLQCFIKRNR---STQ-------------TYHLYLSLTNALADDGKFLLA 140 (270)
Q Consensus 95 ----p~sLkqPgPr-~~~iQCfI~Rdk---sg~-------------tY~LYL~l~~~~~d~gkFLLA 140 (270)
-++|.+|--+ || |+|-++. -|. +||=|+-+ -.+|++|+-
T Consensus 178 ~SWR~Mfl~RpRvrFdG---~YIS~~tYiR~G~~~~~~~~~PVHlV~YYRYiRF----yP~G~~l~~ 237 (366)
T KOG2997|consen 178 TSWREMFLERPRVRFDG---VYISKTTYIRQGENSLDSFYRPVHLVEYYRYIRF----YPDGHVLML 237 (366)
T ss_pred hHHHHHHhhCcceeecc---eEEEEEeEeecCchhhhhhcCcceeeEEEEEEEe----cCCCcEEEE
Confidence 1247777654 45 7777662 221 79988863 478888763
No 8
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=87.90 E-value=0.15 Score=49.77 Aligned_cols=68 Identities=19% Similarity=0.454 Sum_probs=52.6
Q ss_pred CCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhh--hcCcccccccccccccccCCCCCc-eEEEE
Q 024270 36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEI--VKVPELSGYLTFPISVKQPGPRDY-LLQCF 111 (270)
Q Consensus 36 ~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ei--v~~pe~~gk~tFp~sLkqPgPr~~-~iQCf 111 (270)
.|.+||.|+|.+||.-| ..++....++||++|..++.+- -...+..|+--.|.+|-+=.-|+. .++|-
T Consensus 97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rla 167 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLA 167 (419)
T ss_pred CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcc
Confidence 39999999999999877 5678999999999999988542 224566777778887777777773 34553
No 9
>PF12043 DUF3527: Domain of unknown function (DUF3527); InterPro: IPR021916 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 120 amino acids in length. This domain has a conserved CDCGGWD sequence motif.
Probab=63.93 E-value=30 Score=34.07 Aligned_cols=73 Identities=22% Similarity=0.346 Sum_probs=42.3
Q ss_pred CceEEEEEEeecCCceeeeecccccccCCCCeEEEEEEecCCC----CCc--eEEEEc-CC---C---CCC-----CCCC
Q 024270 105 DYLLQCFIKRNRSTQTYHLYLSLTNALADDGKFLLAARKCRRA----TCT--DYIISL-HS---D---DMS-----KGSS 166 (270)
Q Consensus 105 ~~~iQCfI~Rdksg~tY~LYL~l~~~~~d~gkFLLAARKrrr~----~tS--nYiISl-d~---~---dlS-----R~S~ 166 (270)
-+.+||.++ .+-+-|.+-+ ++.+=.|||+-.+-. ... -|.+-. +. . -++ +...
T Consensus 6 qalLq~t~K--NG~P~F~Fsv-------d~~~~VlaAt~~k~~~~~~~~~~~vYTFhs~~e~KKks~~w~~~~~k~k~~~ 76 (346)
T PF12043_consen 6 QALLQCTWK--NGLPLFEFSV-------DNPEEVLAATMWKSGSSDKNDLNWVYTFHSIKEVKKKSGSWINSGDKNKSSS 76 (346)
T ss_pred eEEEEEEEe--CCeEEEEEEe-------CCcccEEEEEEeecccccccccceEEEEEeeccccccccccccccccccCCc
Confidence 477888887 3334555555 455567777665533 233 344432 21 1 121 2234
Q ss_pred ceeeeee-----------ccc-cccEEEEecC
Q 024270 167 TYLGKLR-----------SNF-LGTKFIVYDG 186 (270)
Q Consensus 167 ~yvGKLR-----------SNf-lGTkFtIYD~ 186 (270)
+.||+|+ .+. +-|||++||.
T Consensus 77 ~iVGQMkVSss~~~~~~~~~~s~~~EFVLf~~ 108 (346)
T PF12043_consen 77 NIVGQMKVSSSLSSEPSKQGSSMVTEFVLFGV 108 (346)
T ss_pred ceEEEEEeeeeeeecccCCcceeEEEEEEEec
Confidence 7999997 223 7789999995
No 10
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=58.42 E-value=5.4 Score=40.48 Aligned_cols=56 Identities=21% Similarity=0.374 Sum_probs=39.7
Q ss_pred CCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhhhcCcccccccccccccc
Q 024270 35 CCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVK 99 (270)
Q Consensus 35 ~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~eiv~~pe~~gk~tFp~sLk 99 (270)
+.=-.|||||+..||.-|+ +| ...-||.+|+.|-..+.+. .....-...||+.-+.
T Consensus 70 ~~~~~LPpEl~lkvFS~LD----tk----sl~r~a~~c~~~n~~AlD~-~~~q~idL~t~~rDv~ 125 (483)
T KOG4341|consen 70 SISRSLPPELLLKVFSMLD----TK----SLCRAAQCCTMWNKLALDG-SCWQHIDLFTFQRDVD 125 (483)
T ss_pred cccccCCHHHHHHHHHHHh----HH----HHHHHHHHHHHhhhhhhcc-ccceeeehhcchhcCC
Confidence 3333699999999999993 33 5566999999999988765 3444444557755443
No 11
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=41.45 E-value=6.1 Score=40.52 Aligned_cols=40 Identities=30% Similarity=0.541 Sum_probs=33.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (270)
Q Consensus 33 ~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ 80 (270)
+..-=..||.||.--|+..| +. ++..+|++||+.|+.++.
T Consensus 104 ~~dfi~~lp~el~~~il~~L-------d~-~~l~~~~~v~~~w~~~~~ 143 (537)
T KOG0274|consen 104 QRDFLSLLPSELSLHILSFL-------DG-RDLLAVRQVCRNWNKLLD 143 (537)
T ss_pred ccchhhcccchhcccccccC-------CH-HHhhhhhhhcchhhhhhh
Confidence 33345569999999999999 55 679999999999999875
No 12
>PF04525 Tub_2: Tubby C 2; InterPro: IPR007612 This is a family of plant and bacterial uncharacterised proteins.; PDB: 1ZXU_A 2Q4M_A.
Probab=38.53 E-value=1e+02 Score=26.64 Aligned_cols=79 Identities=16% Similarity=0.191 Sum_probs=31.6
Q ss_pred ceEEEEEEeecCCc--eeeeecccccccCCCCeEEEEEEec-CCCCCceEEEEcCCC-CC-CCCCCceeeeeeccccccE
Q 024270 106 YLLQCFIKRNRSTQ--TYHLYLSLTNALADDGKFLLAARKC-RRATCTDYIISLHSD-DM-SKGSSTYLGKLRSNFLGTK 180 (270)
Q Consensus 106 ~~iQCfI~Rdksg~--tY~LYL~l~~~~~d~gkFLLAARKr-rr~~tSnYiISld~~-dl-SR~S~~yvGKLRSNflGTk 180 (270)
|..-..|+|..-+. +|..|.+-. .++.+.+...||. .-...++..+.+.+. .. .-++...-=+++.||++-+
T Consensus 62 G~~L~~i~~k~~~l~~~w~i~~~~~---~~~~~~i~tvkk~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~i~G~~~~~~ 138 (187)
T PF04525_consen 62 GNPLFTIRRKLFSLRPTWEIYRGGG---SEGKKPIFTVKKKSMLQNKDSFDVFLPPKSNISIDDSEGPDFEIKGNFWDRS 138 (187)
T ss_dssp S-EEEEEE--------EEEEEETT------GGGEEEEEE----------EEEEET--T----------SEEEES-TTTT-
T ss_pred CCEEEEEEeeecccceEEEEEECCC---CccCceEEEEEEecccCCCcceeEEEecccceeecCCCCceEEEEEEecCcE
Confidence 45556777743332 899998521 1223467777775 223333444444322 11 0122233447899999999
Q ss_pred EEEecCC
Q 024270 181 FIVYDGQ 187 (270)
Q Consensus 181 FtIYD~g 187 (270)
|+|||.+
T Consensus 139 ~~I~~~~ 145 (187)
T PF04525_consen 139 FTIYDSG 145 (187)
T ss_dssp -EEEECC
T ss_pred EEEEEcC
Confidence 9999743
No 13
>PF11038 DGF-1_5: Dispersed gene family protein 1 of Trypanosoma cruzi region 5; InterPro: IPR021282 Dispersed gene family protein 1 of Trypanosoma cruzi is likely to be highly expressed, and is expressed from the sub-telomeric region []. However, its function is not known. This entry represents domain 5 on this protein, found downstream the C-terminal domain.
Probab=37.52 E-value=50 Score=30.77 Aligned_cols=105 Identities=28% Similarity=0.427 Sum_probs=60.3
Q ss_pred CCCCCccceeeecccchhHHHHHHhhhcCccccccccc-ccccccCC----CCCceE-EEEEEeecCCceeeeecccccc
Q 024270 57 SAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTF-PISVKQPG----PRDYLL-QCFIKRNRSTQTYHLYLSLTNA 130 (270)
Q Consensus 57 ~~wp~r~~vvaca~VCr~WR~i~~eiv~~pe~~gk~tF-p~sLkqPg----Pr~~~i-QCfI~Rdksg~tY~LYL~l~~~ 130 (270)
..-|.+ -.|+|+..|| |.. +|+.--.++| |.+++||- |.+.++ --.-.||+.++
T Consensus 15 ~~~p~~-~~va~~~~~r-w~r-------d~~l~~~l~f~~~s~~q~~~~~~~~ge~lrnatw~rn~tnp----------- 74 (278)
T PF11038_consen 15 GAVPKK-LTVALPPPFR-WAR-------DPQLGTHLTFCRCSRMQPNGYSGPWGEMLRNATWVRNATNP----------- 74 (278)
T ss_pred ccCCcc-eEEecCCCcc-ccc-------CCCcCcceEEEEecccCCccCCCchHhhhccCeeeecCCCC-----------
Confidence 334544 4799999999 754 6776666776 45788884 555444 34556665543
Q ss_pred cCCCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCC-ceeeeeeccccccEEEEecCCCCC
Q 024270 131 LADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSS-TYLGKLRSNFLGTKFIVYDGQPPH 190 (270)
Q Consensus 131 ~~d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~-~yvGKLRSNflGTkFtIYD~g~p~ 190 (270)
.+..=|++-+.+ .|.|-+|.+-+-|... ...|--+.-++| .|||-.+-||.
T Consensus 75 ---~~vlelavp~~~-----~yfig~de~ivi~~~~~av~ggc~gvl~g-sfti~sntp~~ 126 (278)
T PF11038_consen 75 ---STVLELAVPVHR-----GYFIGMDETIVIRCDAHAVFGGCKGVLLG-SFTINSNTPPA 126 (278)
T ss_pred ---ceeEEEEEeccC-----ceEEecCceEEEEecchhhcCCcceEEEe-eEEecCCCcHH
Confidence 334445554433 4777777765433221 122222223333 58988887654
No 14
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=28.24 E-value=32 Score=26.75 Aligned_cols=21 Identities=29% Similarity=0.498 Sum_probs=18.6
Q ss_pred CCCCCCCCHHHHHHHHHhhhh
Q 024270 34 TCCWANLPQELLREILAKIEA 54 (270)
Q Consensus 34 ~~~Wa~lppell~~i~~r~e~ 54 (270)
++.|..||.|+-..|+..|.-
T Consensus 69 ~~~w~~LP~EIk~~Il~~L~~ 89 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILEYLSN 89 (97)
T ss_pred CCchhhCCHHHHHHHHHcCCH
Confidence 488999999999999998854
No 15
>PF03803 Scramblase: Scramblase ; InterPro: IPR005552 Scramblase is palmitoylated and contains a potential protein kinase C phosphorylation site. Scramblase exhibits Ca2+-activated phospholipid scrambling activity in vitro. There are also possible SH3 and WW binding motifs. Scramblase is involved in the redistribution of phospholipids after cell activation or injury [].
Probab=25.98 E-value=2e+02 Score=25.12 Aligned_cols=27 Identities=15% Similarity=0.389 Sum_probs=22.1
Q ss_pred CCCCCceeeeeec--cccccEEEEecCCC
Q 024270 162 SKGSSTYLGKLRS--NFLGTKFIVYDGQP 188 (270)
Q Consensus 162 SR~S~~yvGKLRS--NflGTkFtIYD~g~ 188 (270)
....+.+||+++- ++.+.+|.|||...
T Consensus 111 ~~p~g~~iG~I~q~~~~~~~~f~I~d~~~ 139 (221)
T PF03803_consen 111 ESPPGNLIGSIRQPFSCCRPNFDIFDANG 139 (221)
T ss_pred ecCCCcEEEEEEEcCcccceEEEEEECCC
Confidence 3456789999987 55799999999974
No 16
>PRK13890 conjugal transfer protein TrbA; Provisional
Probab=25.10 E-value=69 Score=26.31 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=26.1
Q ss_pred CCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhhhc
Q 024270 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVK 84 (270)
Q Consensus 37 Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~eiv~ 84 (270)
...+||.+.+ ++.+| |.. -|-|++.|.+-++.+++
T Consensus 84 ~~~~~~~~~~-lld~L-------~~~-----PA~v~~~~~~~~~~~~~ 118 (120)
T PRK13890 84 PRSLPPGFER-VAAVL-------PEH-----QAFIVKKWGEATRKKLR 118 (120)
T ss_pred CCCCChHHHH-HHHHc-------CCc-----cHHHHHHHHHHHHHHHc
Confidence 5578998665 88888 333 35699999999987764
No 17
>PF10504 DUF2452: Protein of unknown function (DUF2452); InterPro: IPR019534 This entry contains proteins that have no known function.
Probab=21.98 E-value=1.2e+02 Score=27.00 Aligned_cols=98 Identities=23% Similarity=0.406 Sum_probs=49.2
Q ss_pred CHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHhhhcCcccccccccccccccCCCCC---ceEEEEEEeecC
Q 024270 41 PQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKEIVKVPELSGYLTFPISVKQPGPRD---YLLQCFIKRNRS 117 (270)
Q Consensus 41 ppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~eiv~~pe~~gk~tFp~sLkqPgPr~---~~iQCfI~Rdks 117 (270)
+|+=|-+.-+.|+..++.|=++ .|..-..|+..|-.--++.-++ ++=.-++ .-.+|-++. .-
T Consensus 28 ~~~dlv~la~~iq~Ad~~~~~~--------t~~kL~~I~eQi~~Lq~QA~~i------le~~~~~~~l~~A~cnF~p-ip 92 (159)
T PF10504_consen 28 DPFDLVDLAQQIQKADSAMRAN--------TCNKLEVIAEQIRFLQEQARKI------LEEAERNEELHHAKCNFEP-IP 92 (159)
T ss_pred CHHHHHHHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHHHHHHH------HHHHHHhHHHhhcccCcee-cC
Confidence 6777777777776655544332 4555555554442111111111 0111112 335677765 45
Q ss_pred CceeeeecccccccCCCCeEEEEEEecCCCCCceEEEEcCCCCCCC-CCCceeeeee
Q 024270 118 TQTYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSK-GSSTYLGKLR 173 (270)
Q Consensus 118 g~tY~LYL~l~~~~~d~gkFLLAARKrrr~~tSnYiISld~~dlSR-~S~~yvGKLR 173 (270)
|.+||||.. ++| .+|+-=+.|++-.. -...|+|-.|
T Consensus 93 G~iYhLY~r------~~G--------------~~ylSmisP~EWg~~~p~~flGsyr 129 (159)
T PF10504_consen 93 GQIYHLYRR------ENG--------------QDYLSMISPEEWGGSCPHEFLGSYR 129 (159)
T ss_pred CCEEEEEEC------CCC--------------CEEEEeeCHHHhCCCCCcCEEEEEE
Confidence 679999973 333 34444455666432 3345777554
Done!