Query 024270
Match_columns 270
No_of_seqs 194 out of 295
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 05:19:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3c5n_A Tubby-related protein 1 100.0 2E-47 7E-52 346.2 14.6 129 98-246 5-139 (246)
2 2fim_A Tubby related protein 1 100.0 1.1E-46 3.7E-51 346.5 14.3 129 98-246 29-163 (276)
3 1fs1_A SKP2 F-BOX, cyclin A/CD 98.4 9.5E-08 3.3E-12 65.7 1.7 40 33-80 5-44 (53)
4 2ast_B S-phase kinase-associat 97.5 3E-05 1E-09 67.9 1.7 40 33-80 5-44 (336)
5 2e31_A FBS1, F-box only protei 97.2 9.3E-05 3.2E-09 68.5 2.2 39 34-80 48-87 (297)
6 2p1m_B Transport inhibitor res 97.2 7.5E-05 2.6E-09 70.1 1.1 41 33-80 2-42 (594)
7 2ovr_B FBW7, F-BOX/WD repeat p 96.3 0.0015 5.1E-08 58.7 2.3 41 32-80 14-54 (445)
8 3v7d_B Cell division control p 96.1 0.00082 2.8E-08 60.2 -0.5 42 32-81 10-51 (464)
9 3l2o_B F-box only protein 4; s 95.4 0.0021 7.2E-08 60.2 -0.7 38 36-81 4-41 (312)
10 3ogk_B Coronatine-insensitive 95.0 0.0051 1.7E-07 57.8 0.6 37 37-80 13-49 (592)
11 1p22_A F-BOX/WD-repeat protein 94.7 0.0038 1.3E-07 56.1 -1.0 42 32-81 6-51 (435)
12 1zxu_A AT5G01750 protein; PFAM 33.8 1.1E+02 0.0038 25.7 7.0 52 133-187 83-137 (217)
No 1
>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A
Probab=100.00 E-value=2e-47 Score=346.19 Aligned_cols=129 Identities=31% Similarity=0.548 Sum_probs=107.0
Q ss_pred cccCCCCCceEEEEEEeecCCc------eeeeecccccccCCCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCCceeee
Q 024270 98 VKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK 171 (270)
Q Consensus 98 LkqPgPr~~~iQCfI~Rdksg~------tY~LYL~l~~~~~d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~~yvGK 171 (270)
|+||+|+|++|||+|+|||+|+ +||||++ .++++|||||||+++++||||+||+|++||||++++||||
T Consensus 5 l~~P~P~~~~~qC~I~R~k~g~~~~~yp~y~l~~~-----~~~~~fLlaark~~~~~~s~YiIS~d~~dlsr~s~~yvGK 79 (246)
T 3c5n_A 5 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 79 (246)
T ss_dssp GGSCCCTTCEEEEEEEECC------CCCEEEEEES-----SSSCCEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred cCCCCCCCceEEEEEEEeCCCCCCCCceEEEEEEe-----CCCcEEEEeeeeccCCCCceEEEEeCccccccCCceEEEE
Confidence 9999999999999999999984 8999996 4667899999999999999999999999999999999999
Q ss_pred eeccccccEEEEecCCCCCCCCccccccccccccccccCCCCCCcceeEEEEEEecccCCCCCCceeEEEeeccc
Q 024270 172 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRC 246 (270)
Q Consensus 172 LRSNflGTkFtIYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~~~~r~ELa~V~Ye~NVLg~rGPRkM~ViiP~~~ 246 (270)
|||||+||+|+|||+|++++.+ .+|+++++|+|||+|.||+|+||++|||+|+|+||...
T Consensus 80 LrsNf~Gt~F~iyD~g~~p~~~---------------~s~~~~~~r~el~~v~Ye~n~l~~~gPR~m~v~iP~~~ 139 (246)
T 3c5n_A 80 LRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS 139 (246)
T ss_dssp EEECSSSSEEEEECSCBCGGGC---------------TTSCGGGBCCEEEEEEECCCCCC---CCCEEEEEECBC
T ss_pred EEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc
Confidence 9999999999999999765322 34566788999999999999999999999999999764
No 2
>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*
Probab=100.00 E-value=1.1e-46 Score=346.49 Aligned_cols=129 Identities=31% Similarity=0.548 Sum_probs=101.5
Q ss_pred cccCCCCCceEEEEEEeecCCc------eeeeecccccccCCCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCCceeee
Q 024270 98 VKQPGPRDYLLQCFIKRNRSTQ------TYHLYLSLTNALADDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGK 171 (270)
Q Consensus 98 LkqPgPr~~~iQCfI~Rdksg~------tY~LYL~l~~~~~d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~~yvGK 171 (270)
|+||+|+|+++||+|+|||+|+ +||||++ .++++|||||||+++++|+||+||+|++||||++++||||
T Consensus 29 l~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~-----~~~~~fLLaarK~k~~~ts~YiIS~d~~dlsr~s~~yvGK 103 (276)
T 2fim_A 29 VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD-----TEKKVFLLAGRKRKRSKTANYLISIDPTNLSRGGENFIGK 103 (276)
T ss_dssp GGSCCCTTCCEEEEEEEEC-------CCEEEEEEC-----SSSCEEEEEEEECTTCSSCEEEEESCTTC------CEEEE
T ss_pred hcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe-----CCCCEEEEEEEeccCCCCceEEEEecchhcccCCceEEEE
Confidence 9999999999999999999984 8999995 5788999999999999999999999999999999999999
Q ss_pred eeccccccEEEEecCCCCCCCCccccccccccccccccCCCCCCcceeEEEEEEecccCCCCCCceeEEEeeccc
Q 024270 172 LRSNFLGTKFIVYDGQPPHAGAKMTRSRSTRLANLKQVSPRIPFGNYSVAHISYELNVLGSRYKFDFCPLLLLRC 246 (270)
Q Consensus 172 LRSNflGTkFtIYD~g~p~~~a~~~~~r~~~~~~~k~vsp~~~~~r~ELa~V~Ye~NVLg~rGPRkM~ViiP~~~ 246 (270)
|||||+||+|+|||+|.+++.+ .+|+++.+|+|||+|.||+|+||++|||+|+|+||...
T Consensus 104 LrSNflGtkF~iyD~G~~p~~~---------------~s~~~~~~r~el~~V~Ye~nvlg~~gPR~m~v~iP~~~ 163 (276)
T 2fim_A 104 LRSNLLGNRFTVFDNGQNPQRG---------------YSTNVASLRQELAAVIYETNVLGFRGPRRMTVIIPGMS 163 (276)
T ss_dssp EEECSSSSEEEEECSSBCGGGC---------------TTSCGGGBCCEEEEEEEC---------CCEEEEEECBC
T ss_pred EEEccCCCEEEEECCCCCcccc---------------cCcccccccEEEEEEEEEecccCCCCCeEEEEEecCcc
Confidence 9999999999999999755322 34566788999999999999999999999999999764
No 3
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=98.37 E-value=9.5e-08 Score=65.69 Aligned_cols=40 Identities=30% Similarity=0.744 Sum_probs=33.0
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (270)
Q Consensus 33 ~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ 80 (270)
+...|+.||+|+|..||.+| | .++++.|+.|||+|+.++.
T Consensus 5 ~~~~~~~LP~eil~~I~~~L-------~-~~dl~~~~~Vck~w~~~~~ 44 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFSCL-------C-LPELLKVSGVCKRWYRLAS 44 (53)
T ss_dssp ----CCSSCHHHHHHHHTTS-------C-GGGHHHHHTTCHHHHHHHT
T ss_pred CCCCHHHCCHHHHHHHHHcC-------C-HHHHHHHHHHHHHHHHHhC
Confidence 34679999999999999999 4 4689999999999999874
No 4
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=97.47 E-value=3e-05 Score=67.85 Aligned_cols=40 Identities=30% Similarity=0.745 Sum_probs=34.1
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (270)
Q Consensus 33 ~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ 80 (270)
++..|++||+|+|..||.+| +.+ ++++|+.||++|++++.
T Consensus 5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~ 44 (336)
T 2ast_B 5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS 44 (336)
T ss_dssp --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence 46789999999999999999 443 78999999999999873
No 5
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=97.24 E-value=9.3e-05 Score=68.53 Aligned_cols=39 Identities=36% Similarity=0.759 Sum_probs=34.3
Q ss_pred CCCCCCCCHHHHHHHHHhhhhccCCCCCcccee-eecccchhHHHHHH
Q 024270 34 TCCWANLPQELLREILAKIEAADSAWPSRRSVV-ACAGVCRSWRQITK 80 (270)
Q Consensus 34 ~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vv-aca~VCr~WR~i~~ 80 (270)
......||+|||.+||.|| |. ++++ .|+.|||+||.++.
T Consensus 48 ~~~~~~LP~ell~~Il~~L-------p~-~~L~~r~~~VCk~Wr~l~~ 87 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLAEL-------PA-TELVQACRLVCLRWKELVD 87 (297)
T ss_dssp CCCTTSSCHHHHHHHHHTS-------CH-HHHHHTGGGTCHHHHHHHT
T ss_pred ccChhhCCHHHHHHHHHcC-------CH-HHHHHHHHHHhHHHHHHhc
Confidence 4568899999999999999 76 4688 99999999999874
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.20 E-value=7.5e-05 Score=70.09 Aligned_cols=41 Identities=22% Similarity=0.455 Sum_probs=30.7
Q ss_pred CCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270 33 PTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (270)
Q Consensus 33 ~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ 80 (270)
+...|+.||+|+|..||.+| |..+++++|+.||++|+.+..
T Consensus 2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~ 42 (594)
T 2p1m_B 2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIER 42 (594)
T ss_dssp --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHH
T ss_pred cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhh
Confidence 34689999999999999999 877899999999999999843
No 7
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=96.29 E-value=0.0015 Score=58.69 Aligned_cols=41 Identities=27% Similarity=0.476 Sum_probs=35.0
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270 32 SPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (270)
Q Consensus 32 ~~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ 80 (270)
....-++.||+||+..||..|+ .+++..||.||+.|+.++.
T Consensus 14 ~~~d~~~~lp~e~~~~i~~~l~--------~~~l~~~~~v~~~~~~~~~ 54 (445)
T 2ovr_B 14 FQRDFISLLPKELALYVLSFLE--------PKDLLQAAQTCRYWRILAE 54 (445)
T ss_dssp CCCSTTTSSCHHHHHHHHTTSC--------HHHHHHHTTSCHHHHHHHT
T ss_pred ccCChhHHCCHHHHHHHHHhCC--------HHHHHHHHHHhHHHHhhcC
Confidence 4456689999999999999993 3679999999999999874
No 8
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=96.08 E-value=0.00082 Score=60.21 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=35.9
Q ss_pred CCCCCCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHh
Q 024270 32 SPTCCWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (270)
Q Consensus 32 ~~~~~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~e 81 (270)
.+..-++.||+|+|..||..| |. ++++.|+.||+.|+.++.+
T Consensus 10 ~~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 10 LKRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred cccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence 455668899999999999999 43 4789999999999998754
No 9
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=95.38 E-value=0.0021 Score=60.16 Aligned_cols=38 Identities=13% Similarity=0.322 Sum_probs=33.5
Q ss_pred CCCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHh
Q 024270 36 CWANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (270)
Q Consensus 36 ~Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~e 81 (270)
.|.+||.|++..|+..|+. +|+..||.|||.||.++.+
T Consensus 4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D 41 (312)
T 3l2o_B 4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD 41 (312)
T ss_dssp HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence 4778999999999999943 5699999999999999865
No 10
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=95.00 E-value=0.0051 Score=57.77 Aligned_cols=37 Identities=16% Similarity=0.422 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHhhhhccCCCCCccceeeecccchhHHHHHH
Q 024270 37 WANLPQELLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITK 80 (270)
Q Consensus 37 Wa~lppell~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~ 80 (270)
.+.||+|+|..|+.+| +..++.++|+-|||+|+.+..
T Consensus 13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~ 49 (592)
T 3ogk_B 13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS 49 (592)
T ss_dssp CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence 4589999999999999 567889999999999999854
No 11
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=94.72 E-value=0.0038 Score=56.14 Aligned_cols=42 Identities=26% Similarity=0.532 Sum_probs=34.9
Q ss_pred CCCCCCCCCCHH----HHHHHHHhhhhccCCCCCccceeeecccchhHHHHHHh
Q 024270 32 SPTCCWANLPQE----LLREILAKIEAADSAWPSRRSVVACAGVCRSWRQITKE 81 (270)
Q Consensus 32 ~~~~~Wa~lppe----ll~~i~~r~e~~e~~wp~r~~vvaca~VCr~WR~i~~e 81 (270)
.+..-.+.||+| ||..||..|+. +++..|+.|||.|+.++.+
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence 445567789999 99999999943 5788999999999988753
No 12
>1zxu_A AT5G01750 protein; PFAM PF01167, TULP, structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG; 1.70A {Arabidopsis thaliana} SCOP: d.23.1.2 PDB: 2q4m_A
Probab=33.77 E-value=1.1e+02 Score=25.71 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=25.3
Q ss_pred CCCeEEEEEEecCCCCCceEEEEcCCCCCCCCCCceeeeeecc--c-cccEEEEecCC
Q 024270 133 DDGKFLLAARKCRRATCTDYIISLHSDDMSKGSSTYLGKLRSN--F-LGTKFIVYDGQ 187 (270)
Q Consensus 133 d~gkFLLAARKrrr~~tSnYiISld~~dlSR~S~~yvGKLRSN--f-lGTkFtIYD~g 187 (270)
..|+-|+.-|+...+-...|-|...... ....-||.+|.. | ++++|.|++.+
T Consensus 83 ~~G~~l~~i~rk~~~~~~~~~v~~~~~~---~~~~~i~~vrk~~~~~~~~~~~V~~~~ 137 (217)
T 1zxu_A 83 GSGTPVVTLREKMVSMHDRWQVFRGGST---DQRDLLYTVKRSSMLQLKTKLDVFLGH 137 (217)
T ss_dssp TTSCEEEEEEC------CEEEEEETTCC---CGGGEEEEEEC-------CCEEEEETT
T ss_pred CCCCEEEEEEccccccCcEEEEEcCCCC---CCCcEEEEEEEeccccCCCeEEEEECC
Confidence 4577777776654454566666543211 122457777654 3 57788888765
Done!