BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024271
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LQM3|C3H12_ARATH Zinc finger CCCH domain-containing protein 12 OS=Arabidopsis
thaliana GN=At1g32360 PE=2 SV=1
Length = 384
Score = 298 bits (763), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 169/298 (56%), Positives = 201/298 (67%), Gaps = 45/298 (15%)
Query: 3 YSRDSSENVVHII-VGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSE 61
+ RDS +VVH+I N P++W PN DS+VWATEDDY + + + T ++
Sbjct: 4 HRRDSGGDVVHVIPTNNPPPDNWFPNLGDSAVWATEDDY-----NRAWAMNPDNTSGDNN 58
Query: 62 QPPNKKSRNG--------SQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIE 113
PPNKK+R + ++++KAIGKMFFKTKLCCKFR GTCPYITNCNFAH++E
Sbjct: 59 GPPNKKTRGSPSSSSATTTSAASNRTKAIGKMFFKTKLCCKFRAGTCPYITNCNFAHTVE 118
Query: 114 ELRRPPPNWQEIVAAHEEERA--------STNEIPREEFQIPSIVSTNFAVETQRSYKGR 165
ELRRPPPNWQEIVAAHEEER+ S EIPREEFQIPS+VS+ E+ RS+KGR
Sbjct: 119 ELRRPPPNWQEIVAAHEEERSGGMGTPTVSVVEIPREEFQIPSLVSS--TAESGRSFKGR 176
Query: 166 HCKKFYTEEGCPYGENCTFLHDEQSKNRESVAI--------SLGPGGYGGGGAAAAAAGN 217
HCKKFYTEEGCPYGE+CTFLHDE S+NRESVAI S G GG GGG + +
Sbjct: 177 HCKKFYTEEGCPYGESCTFLHDEASRNRESVAISLGPGGYGSGGGGGSGGGSVGGGGSSS 236
Query: 218 NIGVSN-------------VKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
N+ V +KPSNWKTRICNKWE+TGYCPFG KCHFAHG E +G
Sbjct: 237 NVVVLGGGGGSGSGSGIQILKPSNWKTRICNKWEITGYCPFGAKCHFAHGAAELHRFG 294
>sp|Q84UQ3|C3H56_ORYSJ Zinc finger CCCH domain-containing protein 56 OS=Oryza sativa
subsp. japonica GN=Os08g0159800 PE=2 SV=1
Length = 367
Score = 270 bits (690), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 153/281 (54%), Positives = 176/281 (62%), Gaps = 34/281 (12%)
Query: 10 NVVHIIVGNGAPEHWI---PNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNK 66
N +HII P+ W D+ +WATEDDY + + S + + PP K
Sbjct: 5 NAIHIIPDAAGPDAWANAAAQGGDAGIWATEDDY-NSQWNADGGGGGSSRAGSEQPPPGK 63
Query: 67 KSRNGSQDV----NSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNW 122
KSR G SKS+AIGKMFFKTKLCCKFR GTCPY+TNCNFAH +EELR+PPPNW
Sbjct: 64 KSRGGGGGEGGGNTSKSRAIGKMFFKTKLCCKFRAGTCPYVTNCNFAHGMEELRKPPPNW 123
Query: 123 QEIVAAHEEERASTNEIPREEFQIPSIVSTN------------FAVETQRSYKGRHCKKF 170
QEIVAAHEE + REE QIP + S+ + R+YKGRHCKKF
Sbjct: 124 QEIVAAHEEATEA-----REEHQIPIMTSSGPTAGGDAGCGGGGGGGSGRAYKGRHCKKF 178
Query: 171 YTEEGCPYGENCTFLHDEQSKNRESVAISLGPG--------GYGGGGAAAAAAGNNIGVS 222
YT+EGCPYG+ CTFLHDEQSK RESVAISL P Y AAAA+A G
Sbjct: 179 YTDEGCPYGDACTFLHDEQSKARESVAISLSPSVGGGGGGGSYNSAAAAAASASAAAGNG 238
Query: 223 NV-KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262
+ KPSNWKTRICNKWE+TGYCPFG+KCHFAHG E YG
Sbjct: 239 PMQKPSNWKTRICNKWEMTGYCPFGSKCHFAHGAAELHKYG 279
>sp|Q9LT81|C3H39_ARATH Zinc finger CCCH domain-containing protein 39 OS=Arabidopsis
thaliana GN=At3g19360 PE=2 SV=1
Length = 386
Score = 136 bits (343), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 83/204 (40%), Positives = 109/204 (53%), Gaps = 27/204 (13%)
Query: 80 KAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIV----AAHEEERAS 135
K +F+KT++C KFR GTC CNFAH IE+LR+PP NWQEIV A + ER
Sbjct: 98 KGTANIFYKTRMCAKFRAGTCRNGELCNFAHGIEDLRQPPSNWQEIVGPPPAGQDRERER 157
Query: 136 TNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQS----- 190
E RE + +V+ N+ + + + + C+KF E CPYG+ C F+H++ S
Sbjct: 158 ERERERERPSLAPVVNNNWEDDQKIILRMKLCRKFCFGEECPYGDRCNFIHEDLSKFRED 217
Query: 191 --KNRESVAISLGPGGYG--------------GGGAAAAAAGNNIGVSNVKPSNWKTRIC 234
K RES IS+G G A NN GV VK WKTR+C
Sbjct: 218 SGKLRESSVISVGATAADQPSDTASNLIEVNRQGSIPVPAPMNNGGV--VKTVYWKTRLC 275
Query: 235 NKWELTGYCPFGNKCHFAHGIQEF 258
K+++TG CPFG+KCHFAHG E
Sbjct: 276 MKFDITGQCPFGDKCHFAHGQAEL 299
Score = 36.6 bits (83), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 32 SVWATEDDYPDDPPSISNSNCQSQTRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKL 91
SV AT D P D + SN R S P + G + +++KT+L
Sbjct: 228 SVGATAADQPSD----TASNLIEVNRQGSIPVPAPMNNGG---------VVKTVYWKTRL 274
Query: 92 CCKFR-NGTCPYITNCNFAHSIEEL 115
C KF G CP+ C+FAH EL
Sbjct: 275 CMKFDITGQCPFGDKCHFAHGQAEL 299
>sp|Q5PP65|C3H28_ARATH Zinc finger CCCH domain-containing protein 28 OS=Arabidopsis
thaliana GN=At2g35430 PE=2 SV=1
Length = 252
Score = 101 bits (252), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 83/193 (43%), Positives = 102/193 (52%), Gaps = 32/193 (16%)
Query: 1 MSYSRDSSENVVHI-IVGNGAPEHWIPNPNDSSVWATEDDYPDDPPSISNSNCQSQTRSN 59
MS+ RD + VH+ I + PE+ PN DSSVWATEDDY S +
Sbjct: 1 MSHRRDYGSDAVHVRITHDPPPENCFPNSGDSSVWATEDDY---------SRVWAINSDG 51
Query: 60 SEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPY-ITNCNFAHSIEELR-- 116
+E P K + S + IGK FFKTKLC KFR GTCPY ++C+FAHS EELR
Sbjct: 52 AESPSKKTRSSSSSE-------IGKSFFKTKLCFKFRAGTCPYSASSCHFAHSAEELRLP 104
Query: 117 -RPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRS--YKGRHCKKFYTE 173
PPPNWQE V AS N RE F + N A +T +S +K R C K+ T
Sbjct: 105 PPPPPNWQETVT-----EASRN---RESFAVSLGPRGNVA-QTLKSPNWKTRICNKWQTT 155
Query: 174 EGCPYGENCTFLH 186
CP+G +C F H
Sbjct: 156 GYCPFGSHCHFAH 168
Score = 80.5 bits (197), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/121 (40%), Positives = 59/121 (48%), Gaps = 35/121 (28%)
Query: 162 YKGRHCKKFYTEEGCPY-GENCTFLHD-------------------EQSKNRESVAISLG 201
+K + C KF CPY +C F H E S+NRES A+SLG
Sbjct: 72 FKTKLCFKFRAGT-CPYSASSCHFAHSAEELRLPPPPPPNWQETVTEASRNRESFAVSLG 130
Query: 202 PGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIY 261
P G N+ +K NWKTRICNKW+ TGYCPFG+ CHFAHG E +
Sbjct: 131 PRG-------------NV-AQTLKSPNWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTF 176
Query: 262 G 262
G
Sbjct: 177 G 177
>sp|Q7F8R0|C3H14_ORYSJ Zinc finger CCCH domain-containing protein 14 OS=Oryza sativa
subsp. japonica GN=Os02g0194200 PE=2 SV=1
Length = 300
Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 53/116 (45%), Gaps = 25/116 (21%)
Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGG------- 207
+ +T K + C KF++ GCP+GE C FLH PGGY
Sbjct: 27 SFQTGVGSKSKPCTKFFSTSGCPFGEGCHFLHHF-------------PGGYQAVAKMTNL 73
Query: 208 GGAAAAAAGNNIGVSNVKPS-----NWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
GG A A + + N P KTR+CNK+ C +G+KCHFAHG +E
Sbjct: 74 GGPAIAPPPGRMPMGNAVPDGPPTPTVKTRLCNKYNTAEGCKWGDKCHFAHGEREL 129
Score = 38.9 bits (89), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
SN+KT++C + G C FG++CHFAHG E
Sbjct: 264 SNFKTKLCENFT-KGSCTFGDRCHFAHGENEL 294
Score = 38.5 bits (88), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 46/116 (39%), Gaps = 11/116 (9%)
Query: 88 KTKLCCKFRNGT-CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQI 146
K+K C KF + + CP+ C+F H P + VA P +
Sbjct: 35 KSKPCTKFFSTSGCPFGEGCHFLHHF-------PGGYQAVAKMTNLGGPAIAPPPGRMPM 87
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGP 202
+ V T ++ R C K+ T EGC +G+ C F H E+ + + S P
Sbjct: 88 GNAVPDGPPTPTVKT---RLCNKYNTAEGCKWGDKCHFAHGERELGKPMLMDSSMP 140
Score = 38.1 bits (87), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117
FKTKLC F G+C + C+FAH ELR+
Sbjct: 266 FKTKLCENFTKGSCTFGDRCHFAHGENELRK 296
>sp|Q69XQ3|C3H44_ORYSJ Zinc finger CCCH domain-containing protein 44 OS=Oryza sativa
subsp. japonica GN=Os06g0618100 PE=2 SV=1
Length = 295
Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 9/100 (9%)
Query: 163 KGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGN---NI 219
K + C KF++ GCP+G +C FLH+ + + ++ GG A AA G
Sbjct: 34 KLKPCTKFFSTSGCPFGSSCHFLHNFPGGYQAAAKMT-----SHGGTAVAAPPGRMPLGP 88
Query: 220 GVSNVKP-SNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
G N P S+ KTR+CNK+ C +G+KCHFAHG +E
Sbjct: 89 GAPNGPPTSSVKTRMCNKYNTAEGCKWGSKCHFAHGEREL 128
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 56 TRSNSEQPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFRNGTCPYITNCNFAHSIEEL 115
R + PP K GS S FKTKLC F G+C + C+FAH EL
Sbjct: 235 VRISGNAPPAKNPGRGSHAGGPGSN------FKTKLCENFNKGSCTFGDRCHFAHGESEL 288
Query: 116 RRPP 119
R+PP
Sbjct: 289 RKPP 292
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
SN+KT++C + G C FG++CHFAHG E
Sbjct: 258 SNFKTKLCENFN-KGSCTFGDRCHFAHGESEL 288
Score = 38.1 bits (87), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 11/103 (10%)
Query: 88 KTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQI 146
K K C KF CP+ ++C+F H+ P +Q AA + + ++
Sbjct: 34 KLKPCTKFFSTSGCPFGSSCHFLHNF------PGGYQ---AAAKMTSHGGTAVAAPPGRM 84
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
P T S K R C K+ T EGC +G C F H E+
Sbjct: 85 PLGPGAPNGPPTS-SVKTRMCNKYNTAEGCKWGSKCHFAHGER 126
>sp|Q7XPK1|C3H31_ORYSJ Zinc finger CCCH domain-containing protein 31 OS=Oryza sativa
subsp. japonica GN=Os04g0665700 PE=2 SV=1
Length = 309
Score = 60.8 bits (146), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAA 214
+ +T S K + C KF++ GCP+GE C F H ++VA +L G A A
Sbjct: 31 SFQTGLSSKLKPCTKFFSTIGCPFGEGCHFSHFVPG-GYQAVAKTLNLGNPAVPAPARAP 89
Query: 215 AGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+ G ++ S+ KTR+C K+ C FG+KCHFAHG +E
Sbjct: 90 MDHAAGGNSHPASSGKTRMCTKYNTAEGCKFGDKCHFAHGEREL 133
Score = 38.9 bits (89), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%), Gaps = 1/30 (3%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
N+KT++C + + G C FG++CHFAHG E
Sbjct: 275 NYKTKLCENF-VKGTCTFGDRCHFAHGENE 303
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117
+KTKLC F GTC + C+FAH E R+
Sbjct: 276 YKTKLCENFVKGTCTFGDRCHFAHGENEQRK 306
>sp|A2ZVY5|C3H9_ORYSJ Zinc finger CCCH domain-containing protein 9 OS=Oryza sativa subsp.
japonica GN=Os01g0645000 PE=2 SV=1
Length = 333
Score = 53.5 bits (127), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%)
Query: 203 GGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
GG G A A + + +KT +CNKWE TG CP+G++C FAHG+ E
Sbjct: 233 GGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAHGVTEL 288
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 37/113 (32%)
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYG 206
P+ V Q +K C K+ CPYG+ C F H
Sbjct: 244 PADSGAELEVYNQGMFKTELCNKWEETGDCPYGDQCQFAH-------------------- 283
Query: 207 GGGAAAAAAGNNIGVSNVKPS----NWKTRICNKWELTGYCPFGNKCHFAHGI 255
GV+ ++P +KT +C CP+G++CHF H +
Sbjct: 284 -------------GVTELRPVIRHPRYKTAVCRMVLAGDVCPYGHRCHFRHSL 323
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 56/148 (37%), Gaps = 50/148 (33%)
Query: 51 NCQSQTRSNSEQPPN-KKSRNGSQ----------DVNSKSKAIGKMFFKTKLCCKFR-NG 98
N + +T SN PPN +++ +G + D ++ + + FKT+LC K+ G
Sbjct: 212 NRKPRTSSNPTNPPNSQRAYDGGKKGDEQKAQPADSGAELEVYNQGMFKTELCNKWEETG 271
Query: 99 TCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVET 158
CPY C FAH + ELR V H PR
Sbjct: 272 DCPYGDQCQFAHGVTELR--------PVIRH----------PR----------------- 296
Query: 159 QRSYKGRHCKKFYTEEGCPYGENCTFLH 186
YK C+ + CPYG C F H
Sbjct: 297 ---YKTAVCRMVLAGDVCPYGHRCHFRH 321
>sp|Q6L5G1|C3H39_ORYSJ Zinc finger CCCH domain-containing protein 39 OS=Oryza sativa
subsp. japonica GN=Os05g0576300 PE=2 SV=1
Length = 343
Score = 50.8 bits (120), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 12/84 (14%)
Query: 187 DEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKP------------SNWKTRIC 234
++ K+R S +++G G A + +GV +P +KT +C
Sbjct: 215 NQGGKHRVSKPVNVGSQRVFVGIDGAEGGEHKVGVKKEEPPMGGLEFEVYNQGMFKTELC 274
Query: 235 NKWELTGYCPFGNKCHFAHGIQEF 258
NKWE TG CP+G++C FAHG+ E
Sbjct: 275 NKWEETGACPYGDQCQFAHGVAEL 298
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 42/113 (37%), Gaps = 37/113 (32%)
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYG 206
P + F V Q +K C K+ CPYG+ C F H
Sbjct: 254 PPMGGLEFEVYNQGMFKTELCNKWEETGACPYGDQCQFAH-------------------- 293
Query: 207 GGGAAAAAAGNNIGVSNVKPS----NWKTRICNKWELTGYCPFGNKCHFAHGI 255
GV+ ++P +KT++C G CP+G++CHF H I
Sbjct: 294 -------------GVAELRPVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRHSI 333
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 36/111 (32%), Gaps = 39/111 (35%)
Query: 86 FFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEF 144
FKT+LC K+ G CPY C FAH + ELR
Sbjct: 268 MFKTELCNKWEETGACPYGDQCQFAHGVAELR---------------------------- 299
Query: 145 QIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRES 195
V YK + C+ CPYG C F H +R S
Sbjct: 300 ----------PVIRHPRYKTQVCRMVLAGGVCPYGHRCHFRHSITPADRFS 340
>sp|Q9C9F5|C3H15_ARATH Zinc finger CCCH domain-containing protein 15 OS=Arabidopsis
thaliana GN=At1g68200 PE=2 SV=1
Length = 308
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 23/29 (79%)
Query: 230 KTRICNKWELTGYCPFGNKCHFAHGIQEF 258
KT +CNKW+ TG CP+G+ C FAHGI+E
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKEL 252
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 42/107 (39%), Gaps = 41/107 (38%)
Query: 88 KTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQI 146
KT+LC K++ GTCPY +C FAH I+ELR V H PR
Sbjct: 224 KTELCNKWQETGTCPYGDHCQFAHGIKELR--------PVIRH----------PR----- 260
Query: 147 PSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLH--DEQSK 191
YK C+ + CPYG C F H EQ K
Sbjct: 261 ---------------YKTEVCRMVLAGDNCPYGHRCHFRHSLSEQEK 292
Score = 38.9 bits (89), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 37/106 (34%)
Query: 156 VETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAA 215
V Q K C K+ CPYG++C F H
Sbjct: 217 VYNQGMTKTELCNKWQETGTCPYGDHCQFAH----------------------------- 247
Query: 216 GNNIGVSNVKPS----NWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
G+ ++P +KT +C CP+G++CHF H + E
Sbjct: 248 ----GIKELRPVIRHPRYKTEVCRMVLAGDNCPYGHRCHFRHSLSE 289
>sp|P47977|CTH2_YEAST mRNA decay factor CTH2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TIS11 PE=1 SV=1
Length = 285
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 33/95 (34%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F + CPYG C F H +G
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAH-------------------------------GLGE 198
Query: 222 SNVKPS--NWKTRICNKWELTGYCPFGNKCHFAHG 254
VK S N++T+ C WE GYCP+G +C F HG
Sbjct: 199 LKVKKSCKNFRTKPCVNWEKLGYCPYGRRCCFKHG 233
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEFCI 260
+KT +C + L G CP+G+KC FAHG+ E +
Sbjct: 170 YKTELCESFTLKGSCPYGSKCQFAHGLGELKV 201
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 11/72 (15%)
Query: 65 NKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELR------- 116
++K + V S+ + K +KT+LC F G+CPY + C FAH + EL+
Sbjct: 148 SEKESSAQPKVKSQVQETPKQLYKTELCESFTLKGSCPYGSKCQFAHGLGELKVKKSCKN 207
Query: 117 ---RPPPNWQEI 125
+P NW+++
Sbjct: 208 FRTKPCVNWEKL 219
>sp|Q10MN8|C3H21_ORYSJ Putative zinc finger CCCH domain-containing protein 21 OS=Oryza
sativa subsp. japonica GN=Os03g0301500 PE=4 SV=1
Length = 457
Score = 48.9 bits (115), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 216 GNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
G + V + KT +CNKWE G CP+G +C FAHG+QE
Sbjct: 370 GGEVEVEAYRQGAAKTELCNKWE-RGACPYGARCRFAHGLQEL 411
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 51/146 (34%), Gaps = 44/146 (30%)
Query: 47 ISNSNCQSQTRSNSEQPPNKKSRNGSQDVNSKS------KAIGKMFFKTKLCCKFRNGTC 100
IS+ NC N P + +D K +A + KT+LC K+ G C
Sbjct: 337 ISHPNCLIFVMGNQCSPKEAAAAGDEEDEEDKGGGEVEVEAYRQGAAKTELCNKWERGAC 396
Query: 101 PYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQR 160
PY C FAH ++ELR V H PR
Sbjct: 397 PYGARCRFAHGLQELR--------PVIRH----------PR------------------- 419
Query: 161 SYKGRHCKKFYTEEGCPYGENCTFLH 186
YK C+ F GCPYG C F H
Sbjct: 420 -YKTLPCQMFAAASGCPYGHRCHFRH 444
Score = 33.1 bits (74), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 38/99 (38%)
Query: 159 QRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNN 218
Q + K C K + CPYG C F H
Sbjct: 380 QGAAKTELCNK-WERGACPYGARCRFAH-------------------------------- 406
Query: 219 IGVSNVKP----SNWKTRICNKWELTGYCPFGNKCHFAH 253
G+ ++P +KT C + CP+G++CHF H
Sbjct: 407 -GLQELRPVIRHPRYKTLPCQMFAAASGCPYGHRCHFRH 444
>sp|P23950|TISB_MOUSE Zinc finger protein 36, C3H1 type-like 1 OS=Mus musculus GN=Zfp36l1
PE=1 SV=1
Length = 338
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 60/152 (39%), Gaps = 51/152 (33%)
Query: 45 PSISNSNCQSQTRSNSE----QPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NGT 99
PS+S+ + + + RS SE P +K + GS VNS +KT+LC F NG
Sbjct: 77 PSLSSRDSRFRDRSFSEGGERLLPTQK-QPGSGQVNSSR-------YKTELCRPFEENGA 128
Query: 100 CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ 159
C Y C FAH I ELR ++
Sbjct: 129 CKYGDKCQFAHGIHELR--------------------------------------SLTRH 150
Query: 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK 191
YK C+ F+T CPYG C F+H+ + +
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEER 182
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 205 YGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+ GG G V S +KT +C +E G C +G+KC FAHGI E
Sbjct: 91 FSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG+ C F H G +
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAH-----------------------------GIHELR 145
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H +E
Sbjct: 146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
Score = 31.6 bits (70), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELR 116
+KT+LC F G CPY C+F H+ EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
>sp|Q07352|TISB_HUMAN Zinc finger protein 36, C3H1 type-like 1 OS=Homo sapiens GN=ZFP36L1
PE=1 SV=1
Length = 338
Score = 48.5 bits (114), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 62/161 (38%), Gaps = 51/161 (31%)
Query: 45 PSISNSNCQSQTRSNSE----QPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NGT 99
P++S+ + + + RS SE P +K G Q VNS +KT+LC F NG
Sbjct: 77 PALSSRDSRFRDRSFSEGGERLLPTQKQPGGGQ-VNSSR-------YKTELCRPFEENGA 128
Query: 100 CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ 159
C Y C FAH I ELR ++
Sbjct: 129 CKYGDKCQFAHGIHELR--------------------------------------SLTRH 150
Query: 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISL 200
YK C+ F+T CPYG C F+H+ + + + A L
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRALAGARDL 191
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 205 YGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+ GG G V S +KT +C +E G C +G+KC FAHGI E
Sbjct: 91 FSEGGERLLPTQKQPGGGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG+ C F H G +
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAH-----------------------------GIHELR 145
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H +E
Sbjct: 146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
>sp|P17431|TISB_RAT Zinc finger protein 36, C3H1 type-like 1 OS=Rattus norvegicus
GN=Zfp36l1 PE=1 SV=1
Length = 338
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 60/152 (39%), Gaps = 51/152 (33%)
Query: 45 PSISNSNCQSQTRSNSE----QPPNKKSRNGSQDVNSKSKAIGKMFFKTKLCCKFR-NGT 99
P++S+ + + + RS SE P +K + GS VNS +KT+LC F NG
Sbjct: 77 PTLSSRDSRFRDRSFSEGGERLLPTQK-QPGSGQVNSSR-------YKTELCRPFEENGA 128
Query: 100 CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ 159
C Y C FAH I ELR ++
Sbjct: 129 CKYGDKCQFAHGIHELR--------------------------------------SLTRH 150
Query: 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK 191
YK C+ F+T CPYG C F+H+ + +
Sbjct: 151 PKYKTELCRTFHTIGFCPYGPRCHFIHNAEER 182
Score = 45.4 bits (106), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 205 YGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+ GG G V S +KT +C +E G C +G+KC FAHGI E
Sbjct: 91 FSEGGERLLPTQKQPGSGQVNSSRYKTELCRPFEENGACKYGDKCQFAHGIHEL 144
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG+ C F H G +
Sbjct: 115 YKTELCRPFEENGACKYGDKCQFAH-----------------------------GIHELR 145
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H +E
Sbjct: 146 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 181
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELR 116
+KT+LC F G CPY C+F H+ EE R
Sbjct: 153 YKTELCRTFHTIGFCPYGPRCHFIHNAEERR 183
>sp|P47979|ZFS1_SCHPO Zinc finger protein zfs1 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=zfs1 PE=1 SV=1
Length = 404
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 45/120 (37%), Gaps = 40/120 (33%)
Query: 84 KMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPRE 142
+ +KT+ C ++ +GTC Y + C FAH +EL+ PP
Sbjct: 324 RALYKTEPCKNWQISGTCRYGSKCQFAHGNQELKEPP----------------------- 360
Query: 143 EFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGP 202
YK C+ F CPYG C FLHDE S ++S I P
Sbjct: 361 ---------------RHPKYKSERCRSFMMYGYCPYGLRCCFLHDE-SNAQKSATIKQSP 404
Score = 44.7 bits (104), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 207 GGGAAAAAAGNNIGVS-NVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
G + +G++ GV+ N K + +KT C W+++G C +G+KC FAHG QE
Sbjct: 304 GSASHPHGSGSSNGVAPNGKRALYKTEPCKNWQISGTCRYGSKCQFAHGNQEL 356
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 29/92 (31%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK CK + C YG C F H GN
Sbjct: 327 YKTEPCKNWQISGTCRYGSKCQFAH-----------------------------GNQELK 357
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAH 253
+ +K+ C + + GYCP+G +C F H
Sbjct: 358 EPPRHPKYKSERCRSFMMYGYCPYGLRCCFLH 389
>sp|P47976|CTH1_YEAST mRNA decay factor CTH1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CTH1 PE=1 SV=2
Length = 325
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 36/114 (31%)
Query: 141 REEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISL 200
R Q+P +V+ YK C+ F + C YG C F H
Sbjct: 191 RAPLQLPQLVNKTL-------YKTELCESFTIKGYCKYGNKCQFAH-------------- 229
Query: 201 GPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHG 254
G N K +N++T+ C W GYCP+G +C F HG
Sbjct: 230 ---------------GLNELKFKKKSNNYRTKPCINWSKLGYCPYGKRCCFKHG 268
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+KT +C + + GYC +GNKC FAHG+ E
Sbjct: 205 YKTELCESFTIKGYCKYGNKCQFAHGLNEL 234
Score = 33.5 bits (75), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 80 KAIGKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELR 116
+ + K +KT+LC F G C Y C FAH + EL+
Sbjct: 198 QLVNKTLYKTELCESFTIKGYCKYGNKCQFAHGLNELK 235
>sp|Q7ZXW9|TISDA_XENLA Zinc finger protein 36, C3H1 type-like 2-A OS=Xenopus laevis
GN=zfp36l2-A PE=2 SV=1
Length = 363
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H G +
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAH-----------------------------GFHELR 162
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H +E
Sbjct: 163 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 198
Score = 41.2 bits (95), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+ V + +KT +C +E +G C +G KC FAHG E
Sbjct: 125 AQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHEL 161
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 39/108 (36%), Gaps = 39/108 (36%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH ELR
Sbjct: 132 YKTELCRPFEESGACKYGEKCQFAHGFHELR----------------------------- 162
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNR 193
++ YK C+ F+T CPYG C F+H+ + + +
Sbjct: 163 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRQ 201
Score = 33.5 bits (75), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRRPP 119
+KT+LC F G CPY C+F H+ EE R+ P
Sbjct: 170 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQAP 203
>sp|Q9C9N3|C3H14_ARATH Zinc finger CCCH domain-containing protein 14 OS=Arabidopsis
thaliana GN=At1g66810 PE=2 SV=1
Length = 310
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 229 WKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
KT +CNKW+ TG C +G+ C FAHGI E
Sbjct: 233 MKTELCNKWQETGACCYGDNCQFAHGIDEL 262
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 42/114 (36%), Gaps = 39/114 (34%)
Query: 86 FFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEF 144
KT+LC K++ G C Y NC FAH I+EL RP V H PR
Sbjct: 232 MMKTELCNKWQETGACCYGDNCQFAHGIDEL-RP-------VIRH----------PR--- 270
Query: 145 QIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAI 198
YK C+ T CPYG C F H + R + +
Sbjct: 271 -----------------YKTEVCRMMVTGAMCPYGHRCHFRHSLTDQERMMMMM 307
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 36/109 (33%), Gaps = 37/109 (33%)
Query: 151 STNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGA 210
+ V Q K C K+ C YG+NC F H
Sbjct: 222 ALELEVYRQGMMKTELCNKWQETGACCYGDNCQFAH------------------------ 257
Query: 211 AAAAAGNNIGVSNVKPS----NWKTRICNKWELTGYCPFGNKCHFAHGI 255
G+ ++P +KT +C CP+G++CHF H +
Sbjct: 258 ---------GIDELRPVIRHPRYKTEVCRMMVTGAMCPYGHRCHFRHSL 297
>sp|Q805B4|TISDB_XENLA Zinc finger protein 36, C3H1 type-like 2-B OS=Xenopus laevis
GN=zfp36l2-B PE=2 SV=1
Length = 364
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H G +
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAH-----------------------------GFHELR 164
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H +E
Sbjct: 165 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEE 200
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 39/108 (36%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F NG C Y C FAH ELR
Sbjct: 134 YKTELCRPFEENGACKYGEKCQFAHGFHELR----------------------------- 164
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNR 193
++ YK C+ F+T CPYG C F+H+ + + +
Sbjct: 165 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNAEERRQ 203
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+ V + +KT +C +E G C +G KC FAHG E
Sbjct: 127 AQVNSTRYKTELCRPFEENGACKYGEKCQFAHGFHEL 163
Score = 32.7 bits (73), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRRPP 119
+KT+LC F G CPY C+F H+ EE R+ P
Sbjct: 172 YKTELCRTFHTIGFCPYGPRCHFIHNAEERRQAP 205
>sp|Q6S9E0|TTP_SHEEP Tristetraprolin OS=Ovis aries GN=ZFP36 PE=2 SV=1
Length = 325
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 49/140 (35%), Gaps = 48/140 (34%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH + ELR+P
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQP--------------------------- 134
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK---------NRESV 196
YK C KFY + CPYG C F+H+ R+S+
Sbjct: 135 -----------SRHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSEDLAAPGHPHVLRQSI 183
Query: 197 AISLGPGGYGGGGAAAAAAG 216
+ S P G A+ AG
Sbjct: 184 SFSGLPSGRRTSPPPASLAG 203
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG C F H + S
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQPS-------------------------- 135
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+ +KT +C+K+ L G CP+G++CHF H E
Sbjct: 136 ---RHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+KT +C + +G C +G KC FAHG+ E
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGEL 131
>sp|P47973|TTP_RAT Tristetraprolin OS=Rattus norvegicus GN=Zfp36 PE=2 SV=1
Length = 320
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ + C YG C F H GPG +
Sbjct: 97 YKTELCRTYSESGRCRYGAKCQFAH--------------GPG--------------ELRQ 128
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+N P +KT +C+K+ L G CP+G++CHF H E
Sbjct: 129 ANRHP-KYKTELCHKFYLQGRCPYGSRCHFIHNPTE 163
>sp|Q8GVZ8|C3H48_ORYSJ Putative zinc finger CCCH domain-containing protein 48 OS=Oryza
sativa subsp. japonica GN=Os07g0139000 PE=4 SV=1
Length = 496
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 13/101 (12%)
Query: 162 YKGRHCKKFYTE-EGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAA---AAAAGN 217
+K + C ++Y+ GCP G C + H E SL G G + AA G
Sbjct: 378 HKTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRLVVAVSSLADAGEGSSSSDSSFAALGGE 437
Query: 218 NIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+ +KT++C + G C F C FAHG E
Sbjct: 438 D---------KYKTKLCKTFTSGGLCLFAANCRFAHGEVEL 469
Score = 37.4 bits (85), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 44/110 (40%), Gaps = 17/110 (15%)
Query: 81 AIGKMFFKTKLCCKF--RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNE 138
A G KTKLC ++ R CP C +AH ++LR +VA A
Sbjct: 372 AFGLEEHKTKLCAEYYSRGLGCPRGNTCKYAHGEDDLRL-------VVAVSSLADAGEGS 424
Query: 139 IPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDE 188
S S+ A+ + YK + CK F + C + NC F H E
Sbjct: 425 S--------SSDSSFAALGGEDKYKTKLCKTFTSGGLCLFAANCRFAHGE 466
Score = 35.8 bits (81), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 87 FKTKLCCKFRNG-TCPYITNCNFAHSIEELRRPPPNW 122
+KTKLC F +G C + NC FAH EL + P W
Sbjct: 440 YKTKLCKTFTSGGLCLFAANCRFAHGEVELGKKEPCW 476
>sp|P26651|TTP_HUMAN Tristetraprolin OS=Homo sapiens GN=ZFP36 PE=1 SV=1
Length = 326
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 39/102 (38%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH + ELR+ N P+
Sbjct: 104 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQ------------------ANRHPK---- 141
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
YK C KFY + CPYG C F+H+
Sbjct: 142 ----------------YKTELCHKFYLQGRCPYGSRCHFIHN 167
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG C F H G G +
Sbjct: 104 YKTELCRTFSESGRCRYGAKCQFAH-----------------GLG-----------ELRQ 135
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+N P +KT +C+K+ L G CP+G++CHF H E
Sbjct: 136 ANRHP-KYKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+KT +C + +G C +G KC FAHG+ E
Sbjct: 103 RYKTELCRTFSESGRCRYGAKCQFAHGLGEL 133
Score = 31.2 bits (69), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEE 114
+KT+LC KF G CPY + C+F H+ E
Sbjct: 142 YKTELCHKFYLQGRCPYGSRCHFIHNPSE 170
>sp|A4IIN5|TISD_XENTR Zinc finger protein 36, C3H1 type-like 2 OS=Xenopus tropicalis
GN=zfp36l2 PE=2 SV=1
Length = 333
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H G +
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAH-----------------------------GFHELR 132
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CH H +E
Sbjct: 133 SLTRHPKYKTELCRTFHTIGFCPYGPRCHLIHNAEE 168
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+ V + +KT +C +E +G C +G KC FAHG E
Sbjct: 95 AQVNSTRYKTELCRPFEESGACKYGEKCQFAHGFHEL 131
Score = 38.5 bits (88), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 38/108 (35%), Gaps = 39/108 (36%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH ELR
Sbjct: 102 YKTELCRPFEESGACKYGEKCQFAHGFHELR----------------------------- 132
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNR 193
++ YK C+ F+T CPYG C +H+ + + +
Sbjct: 133 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHLIHNAEERRQ 171
>sp|P53781|TTP_BOVIN Tristetraprolin OS=Bos taurus GN=ZFP36 PE=2 SV=1
Length = 324
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 39/102 (38%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +G C Y C FAH + ELR+
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQ---------------------------- 133
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
YK C KFY + CPYG C F+H+
Sbjct: 134 ----------ASRHPKYKTELCHKFYLQGRCPYGSRCHFIHN 165
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 35/96 (36%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YG C F H + S
Sbjct: 102 YKTELCRTFSESGRCRYGAKCQFAHGLGELRQAS-------------------------- 135
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+ +KT +C+K+ L G CP+G++CHF H E
Sbjct: 136 ---RHPKYKTELCHKFYLQGRCPYGSRCHFIHNPSE 168
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+KT +C + +G C +G KC FAHG+ E
Sbjct: 101 RYKTELCRTFSESGRCRYGAKCQFAHGLGEL 131
>sp|P47974|TISD_HUMAN Zinc finger protein 36, C3H1 type-like 2 OS=Homo sapiens GN=ZFP36L2
PE=1 SV=3
Length = 494
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H G +
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAH-----------------------------GFHELR 184
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H E
Sbjct: 185 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 220
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 52/157 (33%), Gaps = 48/157 (30%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +GTC Y C FAH ELR
Sbjct: 154 YKTELCRPFEESGTCKYGEKCQFAHGFHELR----------------------------- 184
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGY 205
++ YK C+ F+T CPYG C F+H+ + P
Sbjct: 185 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADERR---------PAPS 226
Query: 206 GGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGY 242
GG A G + P + ++ + +G+
Sbjct: 227 GGASGDLRAFGTRDALHLGFPREPRPKLHHSLSFSGF 263
Score = 39.7 bits (91), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 224 VKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+ + +KT +C +E +G C +G KC FAHG E
Sbjct: 149 INSTRYKTELCRPFEESGTCKYGEKCQFAHGFHEL 183
>sp|Q9FG30|C3H52_ARATH Zinc finger CCCH domain-containing protein 52 OS=Arabidopsis
thaliana GN=At5g06770 PE=2 SV=1
Length = 240
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
Query: 218 NIGVSNVKP---SNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGI 263
IG KP SN+KT+IC+++ G C +G++CHFAHG E GI
Sbjct: 192 GIGGPEGKPHPGSNYKTKICDRYS-KGNCTYGDRCHFAHGESELRRSGI 239
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 155 AVETQRSYKGRHCKKFYTEEGCPYGENCTFLH 186
++ T K + C KF++ GCP+G+NC FLH
Sbjct: 30 SISTGLGSKSKPCTKFFSTSGCPFGDNCHFLH 61
Score = 38.5 bits (88), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117
+KTK+C ++ G C Y C+FAH ELRR
Sbjct: 206 YKTKICDRYSKGNCTYGDRCHFAHGESELRR 236
Score = 32.7 bits (73), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 230 KTRICNKWELTGYCPFGNKCHFAH 253
K++ C K+ T CPFG+ CHF H
Sbjct: 38 KSKPCTKFFSTSGCPFGDNCHFLH 61
>sp|P22893|TTP_MOUSE Tristetraprolin OS=Mus musculus GN=Zfp36 PE=1 SV=1
Length = 319
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 39/102 (38%)
Query: 87 FKTKLCCKF-RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC + +G C Y C FAH + ELR+ N P+
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAHGLGELRQ------------------ANRHPK---- 133
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
YK C KFY + CPYG C F+H+
Sbjct: 134 ----------------YKTELCHKFYLQGRCPYGSRCHFIHN 159
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ + C YG C F H G G +
Sbjct: 96 YKTELCRTYSESGRCRYGAKCQFAH-----------------GLG-----------ELRQ 127
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
+N P +KT +C+K+ L G CP+G++CHF H E
Sbjct: 128 ANRHP-KYKTELCHKFYLQGRCPYGSRCHFIHNPTE 162
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+KT +C + +G C +G KC FAHG+ E
Sbjct: 95 RYKTELCRTYSESGRCRYGAKCQFAHGLGEL 125
>sp|Q9C7C3|C3H36_ARATH Zinc finger CCCH domain-containing protein 36 OS=Arabidopsis
thaliana GN=At3g12130 PE=2 SV=1
Length = 248
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGI 263
SN+KT+IC ++ G C FG++CHFAHG E GI
Sbjct: 212 SNFKTKICERFS-KGNCTFGDRCHFAHGEAELRKSGI 247
Score = 39.3 bits (90), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 163 KGRHCKKFYTEEGCPYGENCTFLH 186
K + C KF++ GCP+GENC FLH
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61
Score = 38.1 bits (87), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRR 117
FKTK+C +F G C + C+FAH ELR+
Sbjct: 214 FKTKICERFSKGNCTFGDRCHFAHGEAELRK 244
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 230 KTRICNKWELTGYCPFGNKCHFAH 253
K++ C K+ T CPFG CHF H
Sbjct: 38 KSKPCTKFFSTSGCPFGENCHFLH 61
>sp|P23949|TISD_MOUSE Zinc finger protein 36, C3H1 type-like 2 OS=Mus musculus GN=Zfp36l2
PE=2 SV=1
Length = 367
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 29/96 (30%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H G +
Sbjct: 127 YKTELCRPFEESGTCKYGEKCQFAH-----------------------------GFHELR 157
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
S + +KT +C + G+CP+G +CHF H E
Sbjct: 158 SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADE 193
Score = 42.0 bits (97), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 39/106 (36%)
Query: 87 FKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F +GTC Y C FAH ELR
Sbjct: 127 YKTELCRPFEESGTCKYGEKCQFAHGFHELR----------------------------- 157
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSK 191
++ YK C+ F+T CPYG C F+H+ +
Sbjct: 158 ---------SLTRHPKYKTELCRTFHTIGFCPYGPRCHFIHNADER 194
Score = 40.8 bits (94), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 222 SNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
S + + +KT +C +E +G C +G KC FAHG E
Sbjct: 120 SQINSTRYKTELCRPFEESGTCKYGEKCQFAHGFHEL 156
>sp|P47980|TIS1_DROME Protein TIS11 OS=Drosophila melanogaster GN=Tis11 PE=2 SV=2
Length = 436
Score = 41.6 bits (96), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 33/97 (34%), Gaps = 31/97 (31%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGV 221
YK C+ F C YGE C F H +
Sbjct: 136 YKTELCRPFEEAGECKYGEKCQFAHGSHE------------------------------L 165
Query: 222 SNV-KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQE 257
NV + +KT C + G+CP+G +CHF H E
Sbjct: 166 RNVHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHNADE 202
Score = 39.3 bits (90), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 35/102 (34%), Gaps = 39/102 (38%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQ 145
+KT+LC F G C Y C FAH ELR
Sbjct: 136 YKTELCRPFEEAGECKYGEKCQFAHGSHELRN---------------------------- 167
Query: 146 IPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
V YK +C+ F++ CPYG C F+H+
Sbjct: 168 ----------VHRHPKYKTEYCRTFHSVGFCPYGPRCHFVHN 199
Score = 39.3 bits (90), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
S +KT +C +E G C +G KC FAHG E
Sbjct: 134 SRYKTELCRPFEEAGECKYGEKCQFAHGSHEL 165
>sp|Q94131|PIE1_CAEEL Pharynx and intestine in excess protein 1 OS=Caenorhabditis elegans
GN=pie-1 PE=1 SV=1
Length = 335
Score = 40.8 bits (94), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 225 KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCI 260
K + +KTR+C+ + GYCP+ + C +AHG E +
Sbjct: 95 KHTEYKTRLCDAFRREGYCPYNDNCTYAHGQDELRV 130
Score = 40.8 bits (94), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 53/141 (37%), Gaps = 29/141 (20%)
Query: 141 REEFQIPSIVSTNFAVETQR---------SYKGRHCKKFYTEEGCPYGENCTFLHDEQS- 190
RE +I + + A T+R YK R C F E CPY +NCT+ H +
Sbjct: 69 REALKITPLAQIDEAPATKRHSSAKDKHTEYKTRLCDAFRREGYCPYNDNCTYAHGQDEL 128
Query: 191 ---KNRESVAISLGPGGYGGGGAAAAAAGNNIGVS----------NVKPSN-----WKTR 232
+ R+ P + I S N +PSN + +
Sbjct: 129 RVPRRRQEYYSRDPPRERRDSRSRRDDVDTTINRSSSSASKHHDENRRPSNNHGSSNRRQ 188
Query: 233 ICNKWELTGYCPFGNKCHFAH 253
IC+ +E G C +G +C F H
Sbjct: 189 ICHNFE-RGNCRYGPRCRFIH 208
Score = 40.4 bits (93), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRRP 118
+KT+LC FR G CPY NC +AH +ELR P
Sbjct: 99 YKTRLCDAFRREGYCPYNDNCTYAHGQDELRVP 131
>sp|Q6YYC0|C3H55_ORYSJ Zinc finger CCCH domain-containing protein 55 OS=Oryza sativa
subsp. japonica GN=Os08g0135800 PE=2 SV=1
Length = 958
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 18/144 (12%)
Query: 65 NKKSRNGSQDVNSKSKAIGKMFFKTKLCC-KFRNGTCPYITNCNFAHSIEELRRPPPNWQ 123
N+ R G D + ++ + +++ + C F G C NC + H + P W+
Sbjct: 292 NRPPRGGHYDEGTWERSEPRREYRSTMPCHDFVKGRCSRGANCRYVH---DDSTPHGGWR 348
Query: 124 EIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCT 183
+ V N I R S +++ T+ ++ KF+ GC G+NC
Sbjct: 349 DEV--------RDNAIGR------SGPDSSYGNRTEHRRTNKNPCKFFANGGCRRGQNCP 394
Query: 184 FLHDEQSKNRESVAISLGPGGYGG 207
+LH+E S+++ + PG GG
Sbjct: 395 YLHEEASQSQMGLGAPDEPGYTGG 418
>sp|A8NZY7|DUS3_COPC7 tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Coprinopsis cinerea
(strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003)
GN=DUS3 PE=3 SV=1
Length = 676
Score = 37.7 bits (86), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 12/93 (12%)
Query: 37 EDDYPDDPPSISNSNCQSQTRSNSEQP-------PNKKSRNGSQDVNSKSKAIGKMFFKT 89
+DD + SI S + + S + QP KK+R G+ +K + GK+ +
Sbjct: 26 DDDAAEGTTSIVKSAGRGEDDSGNGQPSRRALAKAQKKARQGA----NKGRRFGKVRDEV 81
Query: 90 KLCCKFRNGT-CPYITNCNFAHSIEELRRPPPN 121
+LC K NG C + T+C F H I E + P
Sbjct: 82 ELCWKVANGAICDFGTSCRFTHDIAEYIKEKPQ 114
>sp|P0C090|RC3H2_MOUSE RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Mus musculus GN=Rc3h2 PE=2 SV=1
Length = 1187
Score = 37.0 bits (84), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRR 117
+KT +C R G CP TNC FAHS EEL +
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQEELEK 442
Score = 34.7 bits (78), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 9/69 (13%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQS-------KNRESVAISLGP--GGYGGGGAAA 212
YK C+ + GCP G NCTF H ++ + S + P G
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLRNKKMSATVRTFPLLNKVGVNSTVT 470
Query: 213 AAAGNNIGV 221
AGN I V
Sbjct: 471 TTAGNVISV 479
Score = 33.9 bits (76), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQ 264
S +KT +C G CP G C FAH +E Y ++
Sbjct: 409 SKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLR 446
>sp|Q9HBD1|RC3H2_HUMAN RING finger and CCCH-type zinc finger domain-containing protein 2
OS=Homo sapiens GN=RC3H2 PE=1 SV=2
Length = 1191
Score = 37.0 bits (84), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 87 FKTKLCCKFRN-GTCPYITNCNFAHSIEELRR 117
+KT +C R G CP TNC FAHS EEL +
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQEELEK 442
Score = 34.3 bits (77), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ 189
YK C+ + GCP G NCTF H ++
Sbjct: 411 YKTSMCRDLRQQGGCPRGTNCTFAHSQE 438
Score = 33.9 bits (76), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYGIQ 264
S +KT +C G CP G C FAH +E Y ++
Sbjct: 409 SKYKTSMCRDLRQQGGCPRGTNCTFAHSQEELEKYRLR 446
>sp|Q5AVC5|CWC24_EMENI Pre-mRNA-splicing factor cwc24 OS=Emericella nidulans (strain FGSC
A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=cwc24
PE=3 SV=1
Length = 332
Score = 36.6 bits (83), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 221 VSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
V V ++ +C ++LTGYC FG+ C F+H +++
Sbjct: 155 VRTVTFMDYAPDVCKDYKLTGYCGFGDSCKFSHMREDY 192
>sp|Q4WUA0|CWC24_ASPFU Pre-mRNA-splicing factor cwc24 OS=Neosartorya fumigata (strain ATCC
MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc24
PE=3 SV=1
Length = 339
Score = 36.6 bits (83), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 221 VSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
V V ++ +C W+ TG+C FG+ C F H +++
Sbjct: 163 VRTVTVMDFAPDVCKDWKQTGFCGFGDSCKFLHAREDY 200
>sp|Q93XW7|C3H40_ARATH Zinc finger CCCH domain-containing protein 40 OS=Arabidopsis
thaliana GN=At3g21810 PE=1 SV=1
Length = 437
Score = 36.2 bits (82), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 83 GKMFFKTKLCCKF-RNGTCPYITNCNFAHSIEELRRP 118
G +KTKLC F + G C NC FAH ELRRP
Sbjct: 3 GSSMYKTKLCILFNKTGDCSR-PNCTFAHGNAELRRP 38
>sp|Q86B79|UNK_DROME RING finger protein unkempt OS=Drosophila melanogaster GN=unk PE=1
SV=1
Length = 599
Score = 35.8 bits (81), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 75/199 (37%), Gaps = 43/199 (21%)
Query: 86 FFKTKLCCKFRNGTCPYITN---CNFAHSIEELRRPPPNWQEI---------------VA 127
++KT +C + + N C FAH +++ R P + +E+ +
Sbjct: 111 YYKTCMCVHDTDSRGYCVKNGLHCAFAHGMQDQRPPVYDIKELETLQNAESTLDSTNALN 170
Query: 128 AHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHD 187
A ++ER NE P+ + TN+ + +YK CK+ C G C H+
Sbjct: 171 ALDKERNLMNEDPKWQ-------DTNYVLA---NYKTEPCKR--PPRLCRQGYACPQYHN 218
Query: 188 EQSKNR-------ESVAISLGPGGYGGGGAAAAAAGNNIGVSNVK------PSNWKTRIC 234
+ K R S G G AG+N + + P +K+ C
Sbjct: 219 SKDKRRSPRKYKYRSTPCPNVKHGEEWGEPGNCEAGDNCQYCHTRTEQQFHPEIYKSTKC 278
Query: 235 NKWELTGYCPFGNKCHFAH 253
N + GYCP C FAH
Sbjct: 279 NDVQQAGYCPRSVFCAFAH 297
>sp|Q6H7U2|C3H13_ORYSJ Zinc finger CCCH domain-containing protein 13 OS=Oryza sativa
subsp. japonica GN=Os02g0161200 PE=2 SV=1
Length = 426
Score = 35.4 bits (80), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 87 FKTKLCCKFRNGTCPYITNCNFAHSIEELRRPP 119
+KTKLC ++ G C T C+FAH ++RRPP
Sbjct: 11 YKTKLCALWQRGNCNRDT-CSFAHGHGDIRRPP 42
>sp|Q9P6R8|CWC24_SCHPO Pre-mRNA-splicing factor cwf24 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=cwf24 PE=1 SV=1
Length = 533
Score = 35.0 bits (79), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 228 NWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
+++ +C ++LTGYC +G+ C F H +++
Sbjct: 184 DYQPDVCKDYKLTGYCGYGDTCKFLHMREDY 214
>sp|Q9SQU4|C3H34_ARATH Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis
thaliana GN=At3g06410 PE=2 SV=2
Length = 462
Score = 35.0 bits (79), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 19/89 (21%)
Query: 167 CKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKP 226
C+ F C +G +C + H Q GGGG+ A + + +G P
Sbjct: 106 CQHFMRTGTCKFGASCKYHHPRQG---------------GGGGSVAPVSLSYLGY----P 146
Query: 227 SNWKTRICNKWELTGYCPFGNKCHFAHGI 255
+ C+ + TG C FG C F H +
Sbjct: 147 LRPGEKECSYYLRTGQCKFGLTCRFNHPV 175
>sp|Q5RJC5|C3H67_ARATH Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis
thaliana GN=At5g63260 PE=2 SV=2
Length = 435
Score = 34.7 bits (78), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 60/163 (36%), Gaps = 52/163 (31%)
Query: 93 CKF--RNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIV 150
C F R G+C Y ++C F H + +++ E R E+ + P ++
Sbjct: 107 CSFYMRTGSCKYGSSCKFNHPVR---------RKLQIGRERVRERD-----EDVENPKLM 152
Query: 151 STNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGA 210
CK ++ GC YGE+C F H ++ +
Sbjct: 153 ---------------ECKYYFRTGGCKYGESCRFSHMKEHNS-----------------P 180
Query: 211 AAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAH 253
A+ N +G+ ++P + C + G C FG+ C F H
Sbjct: 181 ASVPELNFLGLP-IRPGE---KECPFYMRNGSCKFGSDCKFNH 219
>sp|Q752S4|CWC24_ASHGO Pre-mRNA-splicing factor CWC24 OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CWC24
PE=3 SV=1
Length = 250
Score = 34.7 bits (78), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Query: 211 AAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEF 258
A A G+N+ V +++ +C + TG+C +G+ C F H +F
Sbjct: 86 ARTAVGSNVRTRVVM--DYQPDVCKDYRQTGFCGYGDSCKFLHSRDDF 131
>sp|Q96G46|DUS3L_HUMAN tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like OS=Homo sapiens
GN=DUS3L PE=1 SV=2
Length = 650
Score = 34.7 bits (78), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 214 AAGNNIGVSNVKPSNW-KTRICNKW--ELTGYCPFGNKCHFAHGIQEF 258
A G N G +VKP+N+ K R+C E C FG++C F H + +
Sbjct: 103 ARGQNKGRPHVKPTNYDKNRLCPSLIQESAAKCFFGDRCRFLHDVGRY 150
>sp|B0WSW8|MOCO1_CULQU Molybdenum cofactor sulfurase 1 OS=Culex quinquefasciatus GN=mal1
PE=3 SV=1
Length = 759
Score = 34.7 bits (78), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 35/85 (41%), Gaps = 8/85 (9%)
Query: 144 FQIPSIVSTNFAVETQRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPG 203
+ S VSTNF ++ R C FY G P G + K E + L
Sbjct: 204 LDVASFVSTNF-LDLDRYKPDFVCMSFYKIFGYPTGLGALLIR----KGSEDL---LDKK 255
Query: 204 GYGGGGAAAAAAGNNIGVSNVKPSN 228
YGGG +G N+ +VKPS+
Sbjct: 256 YYGGGTIQIVMSGKNLHRKHVKPSD 280
>sp|Q9XUB2|MEX5_CAEEL Zinc finger protein mex-5 OS=Caenorhabditis elegans GN=mex-5 PE=1
SV=1
Length = 468
Score = 34.7 bits (78), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 225 KPSNWKTRICNKWELTGY--CPFGNKCHFAHGIQEF 258
+P N+KTR+C +G C G +C FAHG++E
Sbjct: 267 QPPNYKTRLC-MMHASGIKPCDMGARCKFAHGLKEL 301
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 87 FKTKLCCKF-RNGT--CPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPRE 142
+KTKLC F R GT CPY C F H ++ + P +Q + +H+++ + IP +
Sbjct: 315 YKTKLCKNFARGGTGFCPYGLRCEFVHPTDKEFQNIPPYQRM--SHDDQDYDQDVIPED 371
Score = 32.7 bits (73), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Query: 229 WKTRICNKWEL--TGYCPFGNKCHFAH 253
+KT++C + TG+CP+G +C F H
Sbjct: 315 YKTKLCKNFARGGTGFCPYGLRCEFVH 341
>sp|A1CNY3|DUS3_ASPCL tRNA-dihydrouridine(47) synthase [NAD(P)(+)] OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=dus3 PE=3 SV=1
Length = 728
Score = 34.3 bits (77), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 27/82 (32%)
Query: 171 YTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWK 230
++ + C +G+ C F HD ++ +E L +GG
Sbjct: 140 FSPKECKFGDRCRFEHDVRTYLKEHKRADLT--TFGG----------------------- 174
Query: 231 TRICNKWELTGYCPFGNKCHFA 252
IC WE G CP+G KC F
Sbjct: 175 --ICPLWEAKGRCPYGYKCRFV 194
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 116,865,936
Number of Sequences: 539616
Number of extensions: 5235314
Number of successful extensions: 17946
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 71
Number of HSP's that attempted gapping in prelim test: 17269
Number of HSP's gapped (non-prelim): 668
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)