Query 024271
Match_columns 270
No_of_seqs 231 out of 1651
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:21:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1m9o_A Tristetraproline; Cys3H 99.6 5.1E-17 1.7E-21 119.8 3.8 70 83-190 6-76 (77)
2 1m9o_A Tristetraproline; Cys3H 99.6 5.8E-17 2E-21 119.5 4.0 70 159-257 7-76 (77)
3 2d9n_A Cleavage and polyadenyl 99.3 6.4E-13 2.2E-17 98.2 4.9 58 85-190 6-63 (77)
4 2cqe_A KIAA1064 protein; CCCH 99.2 1.2E-11 4E-16 95.5 4.6 53 86-190 10-62 (98)
5 2cqe_A KIAA1064 protein; CCCH 99.1 3.4E-11 1.2E-15 92.9 4.4 53 160-256 9-61 (98)
6 2d9n_A Cleavage and polyadenyl 99.1 6.2E-11 2.1E-15 87.5 4.4 63 160-262 6-68 (77)
7 2rhk_C Cleavage and polyadenyl 99.1 4.3E-11 1.5E-15 87.3 2.5 58 85-190 12-69 (72)
8 3d2q_A Muscleblind-like protei 99.0 1.1E-10 3.8E-15 84.6 3.2 62 88-191 5-67 (70)
9 3d2q_A Muscleblind-like protei 99.0 2E-10 6.9E-15 83.2 2.3 64 163-260 5-69 (70)
10 2rhk_C Cleavage and polyadenyl 98.9 2.4E-10 8.2E-15 83.3 2.1 60 160-259 12-71 (72)
11 2e5s_A Otthump00000018578; ZF- 98.8 5E-10 1.7E-14 86.4 1.0 63 87-191 18-81 (98)
12 2e5s_A Otthump00000018578; ZF- 98.8 2.5E-10 8.4E-15 88.1 -1.2 67 161-261 17-84 (98)
13 2d9m_A Zinc finger CCCH-type d 98.8 1.2E-09 4E-14 78.5 1.4 37 225-262 14-50 (69)
14 3d2n_A Muscleblind-like protei 98.6 2.3E-08 8E-13 74.7 3.3 63 86-192 6-69 (83)
15 2d9m_A Zinc finger CCCH-type d 98.5 8.2E-09 2.8E-13 74.1 -0.2 31 88-118 19-49 (69)
16 3d2n_A Muscleblind-like protei 98.5 3.6E-08 1.2E-12 73.7 3.1 62 162-259 7-69 (83)
17 2rpp_A Muscleblind-like protei 98.4 9E-08 3.1E-12 72.4 2.8 61 87-191 15-76 (89)
18 2rpp_A Muscleblind-like protei 98.3 3E-07 1E-11 69.5 2.8 63 162-260 15-78 (89)
19 3u9g_A Zinc finger CCCH-type a 97.9 1.5E-05 5.1E-10 69.5 5.4 46 163-257 150-199 (229)
20 2fc6_A Nuclear, target of EGR1 96.5 0.00069 2.4E-08 45.1 1.3 28 229-256 18-45 (50)
21 2fc6_A Nuclear, target of EGR1 96.4 0.00078 2.7E-08 44.8 1.0 28 162-189 18-45 (50)
22 2lhn_A Nuclear polyadenylated 94.4 0.0025 8.7E-08 46.9 0.0 21 232-256 53-73 (80)
23 3u9g_A Zinc finger CCCH-type a 93.8 0.039 1.3E-06 48.0 3.5 48 85-190 147-199 (229)
24 3u1l_A PRE-mRNA-splicing facto 90.4 0.061 2.1E-06 47.2 0.5 23 90-112 71-93 (240)
25 3u1l_A PRE-mRNA-splicing facto 90.2 0.052 1.8E-06 47.7 -0.1 24 232-256 71-94 (240)
26 2lhn_A Nuclear polyadenylated 88.6 0.077 2.6E-06 38.9 0.0 49 165-262 10-58 (80)
27 3v33_A Ribonuclease ZC3H12A; r 72.5 0.87 3E-05 39.5 0.4 27 230-259 191-217 (223)
28 3v33_A Ribonuclease ZC3H12A; r 43.8 4.9 0.00017 34.7 0.0 25 163-190 191-215 (223)
No 1
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.65 E-value=5.1e-17 Score=119.85 Aligned_cols=70 Identities=37% Similarity=0.857 Sum_probs=32.2
Q ss_pred Cccccccccccccc-cCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCc
Q 024271 83 GKMFFKTKLCCKFR-NGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRS 161 (270)
Q Consensus 83 ~~~~yKTklC~~f~-~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~ 161 (270)
+..+|||+||++|+ .|.|++|++|+|+|+..+++..+. .+.
T Consensus 6 ~~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~~~--------------------------------------~~~ 47 (77)
T 1m9o_A 6 TSSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQANR--------------------------------------HPK 47 (77)
T ss_dssp CSSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGTC------------------------------------------
T ss_pred CCCCccchhCHHhhhCCCcCCCCCccCCCCChhhccccc--------------------------------------ccc
Confidence 45689999999997 899999999999999988775321 124
Q ss_pred cccccCccccccCCCCCCCCCCCCCcccc
Q 024271 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQS 190 (270)
Q Consensus 162 ~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e 190 (270)
+++.+|+.|...|.|++|++|+|+|...|
T Consensus 48 ~k~~~C~~f~~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 48 YKTELCHKFKLQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp -----------------------------
T ss_pred ccCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence 67899998999999999999999998765
No 2
>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A
Probab=99.65 E-value=5.8e-17 Score=119.53 Aligned_cols=70 Identities=33% Similarity=0.847 Sum_probs=30.9
Q ss_pred cCccccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccc
Q 024271 159 QRSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWE 238 (270)
Q Consensus 159 ~~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~ 238 (270)
...||+++|+.|+..|.|++|++|+|+|+..+++.. .....+++.+|++|.
T Consensus 7 ~~~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~~-----------------------------~~~~~~k~~~C~~f~ 57 (77)
T 1m9o_A 7 SSRYKTELCRTYSESGRCRYGAKCQFAHGLGELRQA-----------------------------NRHPKYKTELCHKFK 57 (77)
T ss_dssp SSCCCSCCCSGGGGTSCCTTTTTCSSCSSSCCGGGT-----------------------------C--------------
T ss_pred CCCccchhCHHhhhCCCcCCCCCccCCCCChhhccc-----------------------------cccccccCCcccchh
Confidence 357899999999889999999999999999876431 122467789999998
Q ss_pred ccccCCCCCCCCCCCCccc
Q 024271 239 LTGYCPFGNKCHFAHGIQE 257 (270)
Q Consensus 239 ~~G~C~~G~~CrFaHg~~e 257 (270)
.+|.|++|++|+|+|+..|
T Consensus 58 ~~G~C~~G~~C~f~H~~~e 76 (77)
T 1m9o_A 58 LQGRCPYGSRCHFIHNPTE 76 (77)
T ss_dssp -------------------
T ss_pred hCcCCCCcCcCCCCCCCCC
Confidence 8999999999999999876
No 3
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=6.4e-13 Score=98.23 Aligned_cols=58 Identities=26% Similarity=0.488 Sum_probs=48.3
Q ss_pred cccccccccccccCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCcccc
Q 024271 85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG 164 (270)
Q Consensus 85 ~~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt 164 (270)
..+|+.+|++|+.|.|.+|++|.|+|+.... ++
T Consensus 6 ~~~k~~~C~~fl~G~C~~G~~C~fsH~~~~~-----------------------------------------------~~ 38 (77)
T 2d9n_A 6 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT-----------------------------------------------KM 38 (77)
T ss_dssp SCCTTSBCHHHHTTCCSCTTSSSSBCSCCTT-----------------------------------------------TS
T ss_pred CCCcceeCHhHccCcCCCCCCCCCccccccC-----------------------------------------------cC
Confidence 3568899999999999999999999986321 23
Q ss_pred ccCccccccCCCCCCCCCCCCCcccc
Q 024271 165 RHCKKFYTEEGCPYGENCTFLHDEQS 190 (270)
Q Consensus 165 ~~C~~f~~~G~C~~G~~C~f~H~~~e 190 (270)
.+|+.|+..|.|. |+.|+|+|...+
T Consensus 39 ~~C~~f~~~G~C~-~~~C~f~H~~~~ 63 (77)
T 2d9n_A 39 PECYFYSKFGECS-NKECPFLHIDPE 63 (77)
T ss_dssp CBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred CCCcccCCCCccC-CCCeeccCCCcc
Confidence 5698887779999 999999998753
No 4
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.19 E-value=1.2e-11 Score=95.52 Aligned_cols=53 Identities=32% Similarity=0.646 Sum_probs=46.9
Q ss_pred ccccccccccccCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccc
Q 024271 86 FFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR 165 (270)
Q Consensus 86 ~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~ 165 (270)
.+|+.+|++|+.|.|.+|++|+|+|+. .
T Consensus 10 ~~k~~lC~~f~~G~C~~G~~C~f~H~~----------------------------------------------------~ 37 (98)
T 2cqe_A 10 PKKRELCKFYITGFCARAENCPYMHGD----------------------------------------------------F 37 (98)
T ss_dssp SCCCSBCTTTTTTCCSCSTTCSSBSSS----------------------------------------------------S
T ss_pred CCCCccCcccccCcCCCCCCCCCCCCC----------------------------------------------------C
Confidence 478999999999999999999999961 3
Q ss_pred cCccccccCCCCCCCCCCCCCcccc
Q 024271 166 HCKKFYTEEGCPYGENCTFLHDEQS 190 (270)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e 190 (270)
+|+.|...|.|++|++|+|+|....
T Consensus 38 ~C~~f~~~G~C~~G~~C~f~H~~~~ 62 (98)
T 2cqe_A 38 PCKLYHTTGNCINGDDCMFSHDPLT 62 (98)
T ss_dssp BCSHHHHTSCCSSCTTCSSBCCCCC
T ss_pred cCcCcccCCcCCCCCCCcccCCCCc
Confidence 5988888999999999999998653
No 5
>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1
Probab=99.12 E-value=3.4e-11 Score=92.92 Aligned_cols=53 Identities=30% Similarity=0.651 Sum_probs=46.5
Q ss_pred CccccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccc
Q 024271 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL 239 (270)
Q Consensus 160 ~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~ 239 (270)
..+|+.+|++| ..|.|.+|++|+|+|+. .+|++|..
T Consensus 9 ~~~k~~lC~~f-~~G~C~~G~~C~f~H~~-------------------------------------------~~C~~f~~ 44 (98)
T 2cqe_A 9 LPKKRELCKFY-ITGFCARAENCPYMHGD-------------------------------------------FPCKLYHT 44 (98)
T ss_dssp CSCCCSBCTTT-TTTCCSCSTTCSSBSSS-------------------------------------------SBCSHHHH
T ss_pred CCCCCccCccc-ccCcCCCCCCCCCCCCC-------------------------------------------CcCcCccc
Confidence 35799999877 57999999999999981 46999988
Q ss_pred cccCCCCCCCCCCCCcc
Q 024271 240 TGYCPFGNKCHFAHGIQ 256 (270)
Q Consensus 240 ~G~C~~G~~CrFaHg~~ 256 (270)
+|.|++|++|+|+|...
T Consensus 45 ~G~C~~G~~C~f~H~~~ 61 (98)
T 2cqe_A 45 TGNCINGDDCMFSHDPL 61 (98)
T ss_dssp TSCCSSCTTCSSBCCCC
T ss_pred CCcCCCCCCCcccCCCC
Confidence 99999999999999864
No 6
>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.09 E-value=6.2e-11 Score=87.47 Aligned_cols=63 Identities=29% Similarity=0.496 Sum_probs=51.3
Q ss_pred CccccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccc
Q 024271 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL 239 (270)
Q Consensus 160 ~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~ 239 (270)
..+|+++|++|+. |.|.+|++|+|+|+.... ++.+|++|+.
T Consensus 6 ~~~k~~~C~~fl~-G~C~~G~~C~fsH~~~~~--------------------------------------~~~~C~~f~~ 46 (77)
T 2d9n_A 6 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDMT--------------------------------------KMPECYFYSK 46 (77)
T ss_dssp SCCTTSBCHHHHT-TCCSCTTSSSSBCSCCTT--------------------------------------TSCBCHHHHH
T ss_pred CCCcceeCHhHcc-CcCCCCCCCCCccccccC--------------------------------------cCCCCcccCC
Confidence 4578899987766 999999999999987531 2468999996
Q ss_pred cccCCCCCCCCCCCCcccccccc
Q 024271 240 TGYCPFGNKCHFAHGIQEFCIYG 262 (270)
Q Consensus 240 ~G~C~~G~~CrFaHg~~el~~~~ 262 (270)
.|.|. |++|+|+|...+.....
T Consensus 47 ~G~C~-~~~C~f~H~~~~~~~~~ 68 (77)
T 2d9n_A 47 FGECS-NKECPFLHIDPESKIKD 68 (77)
T ss_dssp TCCCC-CSSCSSBCCCTTSSCSS
T ss_pred CCccC-CCCeeccCCCccccCCC
Confidence 69999 99999999987665443
No 7
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=99.06 E-value=4.3e-11 Score=87.31 Aligned_cols=58 Identities=26% Similarity=0.481 Sum_probs=47.7
Q ss_pred cccccccccccccCCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCcccc
Q 024271 85 MFFKTKLCCKFRNGTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG 164 (270)
Q Consensus 85 ~~yKTklC~~f~~G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt 164 (270)
...|+.+|++|+.|.|.+|++|.|+|+.... ++
T Consensus 12 ~~~k~~vCk~fl~G~C~~G~~C~fsH~~~~~-----------------------------------------------~~ 44 (72)
T 2rhk_C 12 SGEKTVVCKHWLRGLCKKGDQCEFLHEYDMT-----------------------------------------------KM 44 (72)
T ss_dssp SCCCCSBCHHHHTTCCCCGGGSSSBCSCCTT-----------------------------------------------SC
T ss_pred CCCcCeeCHHHhcCCCCCCCCCCCccccccc-----------------------------------------------cC
Confidence 3467899999999999999999999986321 33
Q ss_pred ccCccccccCCCCCCCCCCCCCcccc
Q 024271 165 RHCKKFYTEEGCPYGENCTFLHDEQS 190 (270)
Q Consensus 165 ~~C~~f~~~G~C~~G~~C~f~H~~~e 190 (270)
.+|+.|+..|.|.+ +.|+|.|....
T Consensus 45 ~~C~~f~~~G~C~~-~~C~y~H~~p~ 69 (72)
T 2rhk_C 45 SECYFYSKFGECSN-KECPFLHIDPE 69 (72)
T ss_dssp CBCHHHHHHSCCSB-TTCCSBCCCCC
T ss_pred CcccccCCCCCCCC-CCeeccCCCcc
Confidence 57977776699999 99999998754
No 8
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=99.02 E-value=1.1e-10 Score=84.61 Aligned_cols=62 Identities=18% Similarity=0.524 Sum_probs=49.2
Q ss_pred ccccccccccCCCCCCC-CCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCcccccc
Q 024271 88 KTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGRH 166 (270)
Q Consensus 88 KTklC~~f~~G~C~~Gd-~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~~ 166 (270)
|..+|++|+.|.|.+|+ .|.|+|...++...+ ...++.+
T Consensus 5 k~~vC~~f~~G~C~rg~~~C~f~H~~~~~~~~~----------------------------------------~~~~~~v 44 (70)
T 3d2q_A 5 RLEVCREYQRGNCNRGENDCRFAHPADSTMIDT----------------------------------------NDNTVTV 44 (70)
T ss_dssp EEEBCHHHHTTCCSSCTTTCSSBCCCTTSCCBT----------------------------------------TTTEEEB
T ss_pred cchhCHHHhcCCCCCCCCCCCCccCcccccccc----------------------------------------cCCccee
Confidence 56899999999999999 599999876543321 1246788
Q ss_pred CccccccCCCCCCCCCCCCCccccc
Q 024271 167 CKKFYTEEGCPYGENCTFLHDEQSK 191 (270)
Q Consensus 167 C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (270)
|..|+. |.|.++ .|+|+|....+
T Consensus 45 C~~flk-G~C~r~-~C~y~H~~~~L 67 (70)
T 3d2q_A 45 CMDYIK-GRCSRE-KCKYFHPPAHL 67 (70)
T ss_dssp CHHHHT-TCCCCT-TCCSBCCCHHH
T ss_pred ccccCc-CCCCCC-CcCeeCCHHHH
Confidence 977765 999999 99999998754
No 9
>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A
Probab=98.95 E-value=2e-10 Score=83.20 Aligned_cols=64 Identities=22% Similarity=0.578 Sum_probs=51.0
Q ss_pred ccccCccccccCCCCCCC-CCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccccc
Q 024271 163 KGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTG 241 (270)
Q Consensus 163 Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~G 241 (270)
+..+|+.| ..|.|.+|+ .|+|+|...+.. ......++.+|.+|+ .|
T Consensus 5 k~~vC~~f-~~G~C~rg~~~C~f~H~~~~~~-------------------------------~~~~~~~~~vC~~fl-kG 51 (70)
T 3d2q_A 5 RLEVCREY-QRGNCNRGENDCRFAHPADSTM-------------------------------IDTNDNTVTVCMDYI-KG 51 (70)
T ss_dssp EEEBCHHH-HTTCCSSCTTTCSSBCCCTTSC-------------------------------CBTTTTEEEBCHHHH-TT
T ss_pred cchhCHHH-hcCCCCCCCCCCCCccCccccc-------------------------------ccccCCcceeccccC-cC
Confidence 56789888 569999999 599999886531 112345578999999 69
Q ss_pred cCCCCCCCCCCCCcccccc
Q 024271 242 YCPFGNKCHFAHGIQEFCI 260 (270)
Q Consensus 242 ~C~~G~~CrFaHg~~el~~ 260 (270)
.|.+| .|+|+|...+|+.
T Consensus 52 ~C~r~-~C~y~H~~~~L~~ 69 (70)
T 3d2q_A 52 RCSRE-KCKYFHPPAHLQA 69 (70)
T ss_dssp CCCCT-TCCSBCCCHHHHC
T ss_pred CCCCC-CcCeeCCHHHHhc
Confidence 99999 9999999988764
No 10
>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}
Probab=98.93 E-value=2.4e-10 Score=83.33 Aligned_cols=60 Identities=28% Similarity=0.474 Sum_probs=48.0
Q ss_pred CccccccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccc
Q 024271 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL 239 (270)
Q Consensus 160 ~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~ 239 (270)
...++++|++|+. |.|.+|+.|+|+|+... .++.+|.+|+.
T Consensus 12 ~~~k~~vCk~fl~-G~C~~G~~C~fsH~~~~--------------------------------------~~~~~C~~f~~ 52 (72)
T 2rhk_C 12 SGEKTVVCKHWLR-GLCKKGDQCEFLHEYDM--------------------------------------TKMSECYFYSK 52 (72)
T ss_dssp SCCCCSBCHHHHT-TCCCCGGGSSSBCSCCT--------------------------------------TSCCBCHHHHH
T ss_pred CCCcCeeCHHHhc-CCCCCCCCCCCcccccc--------------------------------------ccCCcccccCC
Confidence 3568899987766 99999999999998642 12468999996
Q ss_pred cccCCCCCCCCCCCCccccc
Q 024271 240 TGYCPFGNKCHFAHGIQEFC 259 (270)
Q Consensus 240 ~G~C~~G~~CrFaHg~~el~ 259 (270)
.|.|.+ ++|+|.|...+.+
T Consensus 53 ~G~C~~-~~C~y~H~~p~~k 71 (72)
T 2rhk_C 53 FGECSN-KECPFLHIDPESK 71 (72)
T ss_dssp HSCCSB-TTCCSBCCCCC--
T ss_pred CCCCCC-CCeeccCCCcccc
Confidence 699999 9999999876543
No 11
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=5e-10 Score=86.37 Aligned_cols=63 Identities=21% Similarity=0.500 Sum_probs=50.2
Q ss_pred cccccccccccCCCCCCC-CCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccc
Q 024271 87 FKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR 165 (270)
Q Consensus 87 yKTklC~~f~~G~C~~Gd-~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~ 165 (270)
.|..+|++|+.|.|.+|+ .|+|+|...++...+ ...++.
T Consensus 18 ~k~~VCr~FlrG~C~rgd~~C~FsH~~~~~~~~~----------------------------------------~~~~~~ 57 (98)
T 2e5s_A 18 DKLEVCREFQRGNCARGETDCRFAHPADSTMIDT----------------------------------------SDNTVT 57 (98)
T ss_dssp SEEEBCSHHHHTCCSSHHHHCSSBCCSSCCSCCT----------------------------------------TTCEEE
T ss_pred hhhhhhHHHhcCcCCCCCCCCCCcCCchhccccc----------------------------------------cCCccc
Confidence 467899999999999999 799999886643321 123567
Q ss_pred cCccccccCCCCCCCCCCCCCccccc
Q 024271 166 HCKKFYTEEGCPYGENCTFLHDEQSK 191 (270)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (270)
+|..|+ .|.|.++ .|+|+|....+
T Consensus 58 vC~~fl-kG~C~r~-~C~y~H~~~~l 81 (98)
T 2e5s_A 58 VCMDYI-KGRCMRE-KCKYFHPPAHL 81 (98)
T ss_dssp BCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred cchhhc-cCCCCCC-CcCccCChHHH
Confidence 897665 5999999 99999998765
No 12
>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=2.5e-10 Score=88.09 Aligned_cols=67 Identities=25% Similarity=0.507 Sum_probs=53.3
Q ss_pred ccccccCccccccCCCCCCC-CCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccc
Q 024271 161 SYKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWEL 239 (270)
Q Consensus 161 ~~Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~ 239 (270)
..|..+|+.|+. |.|.+|+ .|+|+|...+... .....++.+|.+|+
T Consensus 17 ~~k~~VCr~Flr-G~C~rgd~~C~FsH~~~~~~~-------------------------------~~~~~~~~vC~~fl- 63 (98)
T 2e5s_A 17 TDKLEVCREFQR-GNCARGETDCRFAHPADSTMI-------------------------------DTSDNTVTVCMDYI- 63 (98)
T ss_dssp SSEEEBCSHHHH-TCCSSHHHHCSSBCCSSCCSC-------------------------------CTTTCEEEBCHHHH-
T ss_pred hhhhhhhHHHhc-CcCCCCCCCCCCcCCchhccc-------------------------------cccCCccccchhhc-
Confidence 457789988876 9999999 7999999865321 11234568999998
Q ss_pred cccCCCCCCCCCCCCccccccc
Q 024271 240 TGYCPFGNKCHFAHGIQEFCIY 261 (270)
Q Consensus 240 ~G~C~~G~~CrFaHg~~el~~~ 261 (270)
.|.|.++ +|+|.|...+|...
T Consensus 64 kG~C~r~-~C~y~H~~~~l~~~ 84 (98)
T 2e5s_A 64 KGRCMRE-KCKYFHPPAHLQAK 84 (98)
T ss_dssp HTCCCCT-TCCSBCCCHHHHHH
T ss_pred cCCCCCC-CcCccCChHHHHHH
Confidence 7999999 99999999887654
No 13
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.78 E-value=1.2e-09 Score=78.45 Aligned_cols=37 Identities=35% Similarity=0.770 Sum_probs=31.4
Q ss_pred CCCcccccccccccccccCCCCCCCCCCCCcccccccc
Q 024271 225 KPSNWKTRICNKWELTGYCPFGNKCHFAHGIQEFCIYG 262 (270)
Q Consensus 225 ~~~~~kt~lC~~f~~~G~C~~G~~CrFaHg~~el~~~~ 262 (270)
+++..+++||..| .+|.|+||++|+||||++||+.+.
T Consensus 14 R~P~~k~~LC~~~-~~G~C~~G~~C~FAHG~~ELr~~~ 50 (69)
T 2d9m_A 14 RFPTGYFSICDRY-MNGTCPEGNSCKFAHGNAELHEWE 50 (69)
T ss_dssp CCCCSCCSBCHHH-HHSCCSSCSSCSSBSSHHHHHHHH
T ss_pred cCCCCCcccCccc-CcCCCCCCCccCCcCCHHHHhhHH
Confidence 3444567999999 589999999999999999999753
No 14
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.59 E-value=2.3e-08 Score=74.68 Aligned_cols=63 Identities=24% Similarity=0.559 Sum_probs=48.2
Q ss_pred ccccccccccccCCCCCCC-CCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCcccc
Q 024271 86 FFKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKG 164 (270)
Q Consensus 86 ~yKTklC~~f~~G~C~~Gd-~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt 164 (270)
..|..+|+.|+.|.|.+|+ .|+|+|....+.. ...+.
T Consensus 6 ~~~~~VCr~FlrG~C~r~d~~C~f~H~~~~~~~------------------------------------------~~~~~ 43 (83)
T 3d2n_A 6 WLTLEVCREFQRGTCSRPDTECKFAHPSKSCQV------------------------------------------ENGRV 43 (83)
T ss_dssp GGEEEBCTTGGGTCCCSCTTTCSSBCCCTTCCE------------------------------------------ETTEE
T ss_pred cccchhcHHHhcCCCCCCCCCCCCcCCCccccc------------------------------------------cCCce
Confidence 4577899999999999997 9999997632110 01245
Q ss_pred ccCccccccCCCCCCCCCCCCCcccccc
Q 024271 165 RHCKKFYTEEGCPYGENCTFLHDEQSKN 192 (270)
Q Consensus 165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~~ 192 (270)
..|..|+ .|.|.++ .|+|.|....+.
T Consensus 44 ~vC~dfl-kG~C~r~-~C~y~H~~~~l~ 69 (83)
T 3d2n_A 44 IACFDSL-KGRCSRE-NCKYLHPPPHLK 69 (83)
T ss_dssp ECCHHHH-TTCCCCS-SCSSCCCCHHHH
T ss_pred eehhHhh-hccccCC-CcceeCChHHHH
Confidence 7897775 5899998 999999987653
No 15
>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=8.2e-09 Score=74.07 Aligned_cols=31 Identities=39% Similarity=0.732 Sum_probs=28.2
Q ss_pred ccccccccccCCCCCCCCCCCCCCcCccCCC
Q 024271 88 KTKLCCKFRNGTCPYITNCNFAHSIEELRRP 118 (270)
Q Consensus 88 KTklC~~f~~G~C~~Gd~C~FaH~~~elR~p 118 (270)
|++||.+|..|.|+||++|+|||+.+|||..
T Consensus 19 k~~LC~~~~~G~C~~G~~C~FAHG~~ELr~~ 49 (69)
T 2d9m_A 19 YFSICDRYMNGTCPEGNSCKFAHGNAELHEW 49 (69)
T ss_dssp CCSBCHHHHHSCCSSCSSCSSBSSHHHHHHH
T ss_pred CcccCcccCcCCCCCCCccCCcCCHHHHhhH
Confidence 4599999988999999999999999998863
No 16
>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}
Probab=98.53 E-value=3.6e-08 Score=73.69 Aligned_cols=62 Identities=21% Similarity=0.433 Sum_probs=48.8
Q ss_pred cccccCccccccCCCCCCC-CCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccccc
Q 024271 162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (270)
Q Consensus 162 ~Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~ 240 (270)
.+..+|+.|+. |.|.+|+ .|+|+|....... ...+..+|.+|+ .
T Consensus 7 ~~~~VCr~Flr-G~C~r~d~~C~f~H~~~~~~~---------------------------------~~~~~~vC~dfl-k 51 (83)
T 3d2n_A 7 LTLEVCREFQR-GTCSRPDTECKFAHPSKSCQV---------------------------------ENGRVIACFDSL-K 51 (83)
T ss_dssp GEEEBCTTGGG-TCCCSCTTTCSSBCCCTTCCE---------------------------------ETTEEECCHHHH-T
T ss_pred ccchhcHHHhc-CCCCCCCCCCCCcCCCccccc---------------------------------cCCceeehhHhh-h
Confidence 46688998887 9999997 9999998854211 112357899998 7
Q ss_pred ccCCCCCCCCCCCCccccc
Q 024271 241 GYCPFGNKCHFAHGIQEFC 259 (270)
Q Consensus 241 G~C~~G~~CrFaHg~~el~ 259 (270)
|.|.++ .|+|.|....|.
T Consensus 52 G~C~r~-~C~y~H~~~~l~ 69 (83)
T 3d2n_A 52 GRCSRE-NCKYLHPPPHLK 69 (83)
T ss_dssp TCCCCS-SCSSCCCCHHHH
T ss_pred ccccCC-CcceeCChHHHH
Confidence 999999 999999987654
No 17
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.42 E-value=9e-08 Score=72.37 Aligned_cols=61 Identities=25% Similarity=0.556 Sum_probs=47.0
Q ss_pred cccccccccccCCCCCCC-CCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCccccccccccccCccccc
Q 024271 87 FKTKLCCKFRNGTCPYIT-NCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQRSYKGR 165 (270)
Q Consensus 87 yKTklC~~f~~G~C~~Gd-~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~~~~Kt~ 165 (270)
.+..+|+.|+.|.|.+|+ .|+|+|....+.. ..-+..
T Consensus 15 ~~~~VCrdFlrG~C~r~d~~CrfsH~~~~~~v------------------------------------------~~~~~~ 52 (89)
T 2rpp_A 15 LTLEVCRQFQRGTCSRSDEECKFAHPPKSCQV------------------------------------------ENGRVI 52 (89)
T ss_dssp SEECBCHHHHHTCCCCCTTTSSSBCCCSSSCC------------------------------------------BTTBEE
T ss_pred chhhhchHHhcCCCCCCCCCCCCcCCCccccc------------------------------------------cCCcee
Confidence 456899999999999998 9999997643211 012456
Q ss_pred cCccccccCCCCCCCCCCCCCccccc
Q 024271 166 HCKKFYTEEGCPYGENCTFLHDEQSK 191 (270)
Q Consensus 166 ~C~~f~~~G~C~~G~~C~f~H~~~e~ 191 (270)
.|..|+ .|.|.++ .|+|.|....+
T Consensus 53 vC~dfl-kG~C~r~-~Cky~H~~~hl 76 (89)
T 2rpp_A 53 ACFDSL-KGRCSRE-NCKYLHPPTHL 76 (89)
T ss_dssp BCHHHH-HTCCCCT-TCCSBCCCHHH
T ss_pred eehhhh-hCcCCCC-CcceecCHHHH
Confidence 797775 6999987 99999998765
No 18
>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}
Probab=98.29 E-value=3e-07 Score=69.51 Aligned_cols=63 Identities=21% Similarity=0.433 Sum_probs=49.3
Q ss_pred cccccCccccccCCCCCCC-CCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccccc
Q 024271 162 YKGRHCKKFYTEEGCPYGE-NCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELT 240 (270)
Q Consensus 162 ~Kt~~C~~f~~~G~C~~G~-~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~ 240 (270)
.+..+|+.|+. |.|..|+ .|+|+|....... ..-+...|.+|+ .
T Consensus 15 ~~~~VCrdFlr-G~C~r~d~~CrfsH~~~~~~v---------------------------------~~~~~~vC~dfl-k 59 (89)
T 2rpp_A 15 LTLEVCRQFQR-GTCSRSDEECKFAHPPKSCQV---------------------------------ENGRVIACFDSL-K 59 (89)
T ss_dssp SEECBCHHHHH-TCCCCCTTTSSSBCCCSSSCC---------------------------------BTTBEEBCHHHH-H
T ss_pred chhhhchHHhc-CCCCCCCCCCCCcCCCccccc---------------------------------cCCceeeehhhh-h
Confidence 45678999877 9999998 9999998864211 112357899998 8
Q ss_pred ccCCCCCCCCCCCCcccccc
Q 024271 241 GYCPFGNKCHFAHGIQEFCI 260 (270)
Q Consensus 241 G~C~~G~~CrFaHg~~el~~ 260 (270)
|.|.++ .|+|.|....|..
T Consensus 60 G~C~r~-~Cky~H~~~hl~~ 78 (89)
T 2rpp_A 60 GRCSRE-NCKYLHPPTHLKT 78 (89)
T ss_dssp TCCCCT-TCCSBCCCHHHHH
T ss_pred CcCCCC-CcceecCHHHHHH
Confidence 999998 9999999876543
No 19
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=97.85 E-value=1.5e-05 Score=69.46 Aligned_cols=46 Identities=26% Similarity=0.729 Sum_probs=37.8
Q ss_pred ccccCccccc----cCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCccccccccccc
Q 024271 163 KGRHCKKFYT----EEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWE 238 (270)
Q Consensus 163 Kt~~C~~f~~----~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~ 238 (270)
-.++|..| . .|.|.+++.|..+| +|.+|.
T Consensus 150 LPeiC~~Y-kG~g~~g~C~~~~~C~kLH----------------------------------------------IC~~Fl 182 (229)
T 3u9g_A 150 LPEICKSY-KGEGRKQTCGQPQPCERLH----------------------------------------------ICEHFT 182 (229)
T ss_dssp SCCBCTTC-CCSSSCCSCSSSSCCCSBC----------------------------------------------SCHHHH
T ss_pred CchHHHHh-CCCCCCCcCCCCCCCccee----------------------------------------------ccchhh
Confidence 34789888 5 25899999999777 698888
Q ss_pred ccccCCCCCCCCCCCCccc
Q 024271 239 LTGYCPFGNKCHFAHGIQE 257 (270)
Q Consensus 239 ~~G~C~~G~~CrFaHg~~e 257 (270)
.|.|++ .+|.-.|...+
T Consensus 183 -~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 183 -RGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp -TTCCCC-SSCSSCCCTTS
T ss_pred -cCCcCC-CCccCccCccC
Confidence 899999 79999998743
No 20
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.54 E-value=0.00069 Score=45.07 Aligned_cols=28 Identities=36% Similarity=0.932 Sum_probs=25.3
Q ss_pred ccccccccccccccCCCCCCCCCCCCcc
Q 024271 229 WKTRICNKWELTGYCPFGNKCHFAHGIQ 256 (270)
Q Consensus 229 ~kt~lC~~f~~~G~C~~G~~CrFaHg~~ 256 (270)
.++.+|..|.+.|+|++|.+|.+.|..+
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 4578999999999999999999999864
No 21
>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1
Probab=96.44 E-value=0.00078 Score=44.82 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=26.0
Q ss_pred cccccCccccccCCCCCCCCCCCCCccc
Q 024271 162 YKGRHCKKFYTEEGCPYGENCTFLHDEQ 189 (270)
Q Consensus 162 ~Kt~~C~~f~~~G~C~~G~~C~f~H~~~ 189 (270)
.++.+|..|.+.|.|++|.+|.+.|+..
T Consensus 18 ~~~~iC~~FSayGwCp~G~~Cp~SHDiD 45 (50)
T 2fc6_A 18 HPTSICDNFSAYGWCPLGPQCPQSHDIS 45 (50)
T ss_dssp CCSCBCSHHHHTCCCTTGGGCSSBCCCC
T ss_pred cccchhhhccccccCCCCCCCCccccCC
Confidence 4778999999999999999999999985
No 22
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=94.42 E-value=0.0025 Score=46.85 Aligned_cols=21 Identities=24% Similarity=0.279 Sum_probs=16.3
Q ss_pred cccccccccccCCCCCCCCCCCCcc
Q 024271 232 RICNKWELTGYCPFGNKCHFAHGIQ 256 (270)
Q Consensus 232 ~lC~~f~~~G~C~~G~~CrFaHg~~ 256 (270)
.+|+|+. .|.. ..|.|.|...
T Consensus 53 ~~Crf~~---~C~n-~~C~F~Hp~g 73 (80)
T 2lhn_A 53 EDCRFGV---NCKN-IYCLFRHPPG 73 (80)
Confidence 4698765 7888 7899999754
No 23
>3u9g_A Zinc finger CCCH-type antiviral protein 1; zinc finger protein; 1.80A {Rattus norvegicus}
Probab=93.80 E-value=0.039 Score=47.98 Aligned_cols=48 Identities=31% Similarity=0.692 Sum_probs=38.8
Q ss_pred ccccccccccccc-----CCCCCCCCCCCCCCcCccCCCCCchHHHHHHhhhhhcccCCCCccccccCcccccccccccc
Q 024271 85 MFFKTKLCCKFRN-----GTCPYITNCNFAHSIEELRRPPPNWQEIVAAHEEERASTNEIPREEFQIPSIVSTNFAVETQ 159 (270)
Q Consensus 85 ~~yKTklC~~f~~-----G~C~~Gd~C~FaH~~~elR~pp~~~~~~~~~~~~e~~~~~~~~r~~~~~p~~~s~~~~~~~~ 159 (270)
.++--++|.+| + |.|.+++.|...|
T Consensus 147 p~lLPeiC~~Y-kG~g~~g~C~~~~~C~kLH------------------------------------------------- 176 (229)
T 3u9g_A 147 PFFLPEICKSY-KGEGRKQTCGQPQPCERLH------------------------------------------------- 176 (229)
T ss_dssp GGGSCCBCTTC-CCSSSCCSCSSSSCCCSBC-------------------------------------------------
T ss_pred CccCchHHHHh-CCCCCCCcCCCCCCCccee-------------------------------------------------
Confidence 34445899999 6 5899999999999
Q ss_pred CccccccCccccccCCCCCCCCCCCCCcccc
Q 024271 160 RSYKGRHCKKFYTEEGCPYGENCTFLHDEQS 190 (270)
Q Consensus 160 ~~~Kt~~C~~f~~~G~C~~G~~C~f~H~~~e 190 (270)
+|.+| ..|.|+| ..|.-+|+..+
T Consensus 177 ------IC~~F-l~G~C~f-~~CkRsH~~~~ 199 (229)
T 3u9g_A 177 ------ICEHF-TRGNCSY-LNCLRSHNLMD 199 (229)
T ss_dssp ------SCHHH-HTTCCCC-SSCSSCCCTTS
T ss_pred ------ccchh-hcCCcCC-CCccCccCccC
Confidence 38555 5699999 89999999754
No 24
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.39 E-value=0.061 Score=47.22 Aligned_cols=23 Identities=30% Similarity=0.717 Sum_probs=21.4
Q ss_pred ccccccccCCCCCCCCCCCCCCc
Q 024271 90 KLCCKFRNGTCPYITNCNFAHSI 112 (270)
Q Consensus 90 klC~~f~~G~C~~Gd~C~FaH~~ 112 (270)
.+|.+|..|.|.+|+.|.|.|..
T Consensus 71 ~~C~ffakG~C~~G~~C~y~H~l 93 (240)
T 3u1l_A 71 FFCLFFAKGMCCLGPKCEYLHHI 93 (240)
T ss_dssp SBCHHHHTTCCSCGGGCSSBBSC
T ss_pred eEcCccccCCCCCCCCCCccCCC
Confidence 48999999999999999999964
No 25
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=90.25 E-value=0.052 Score=47.69 Aligned_cols=24 Identities=33% Similarity=0.786 Sum_probs=21.3
Q ss_pred cccccccccccCCCCCCCCCCCCcc
Q 024271 232 RICNKWELTGYCPFGNKCHFAHGIQ 256 (270)
Q Consensus 232 ~lC~~f~~~G~C~~G~~CrFaHg~~ 256 (270)
.+|.||. .|.|.+|..|.|.|...
T Consensus 71 ~~C~ffa-kG~C~~G~~C~y~H~lP 94 (240)
T 3u1l_A 71 FFCLFFA-KGMCCLGPKCEYLHHIP 94 (240)
T ss_dssp SBCHHHH-TTCCSCGGGCSSBBSCC
T ss_pred eEcCccc-cCCCCCCCCCCccCCCC
Confidence 5899998 69999999999999754
No 26
>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}
Probab=88.60 E-value=0.077 Score=38.87 Aligned_cols=49 Identities=29% Similarity=0.669 Sum_probs=35.2
Q ss_pred ccCccccccCCCCCCCCCCCCCcccccccccccccCCCCCCCCCCCcccccCCCCCccCCCCCcccccccccccccccCC
Q 024271 165 RHCKKFYTEEGCPYGENCTFLHDEQSKNRESVAISLGPGGYGGGGAAAAAAGNNIGVSNVKPSNWKTRICNKWELTGYCP 244 (270)
Q Consensus 165 ~~C~~f~~~G~C~~G~~C~f~H~~~e~~~e~~~~s~~p~~~~~~~~~~s~~~~~~~~~~~~~~~~kt~lC~~f~~~G~C~ 244 (270)
+.|++| -.|.. ..|.|.|... ..+|+++. .|.
T Consensus 10 e~CKf~---~~Ctn-~~C~f~Hp~~-----------------------------------------~~~Cr~g~---~C~ 41 (80)
T 2lhn_A 10 EQCKFG---THCTN-KRCKYRHARS-----------------------------------------HIMCREGA---NCT 41 (80)
Confidence 679655 36887 9999999552 14688765 788
Q ss_pred CCCCCCCCCCcccccccc
Q 024271 245 FGNKCHFAHGIQEFCIYG 262 (270)
Q Consensus 245 ~G~~CrFaHg~~el~~~~ 262 (270)
. ..|.|+|...+.-+++
T Consensus 42 ~-~~C~f~HP~~~~Crf~ 58 (80)
T 2lhn_A 42 R-IDCLFGHPINEDCRFG 58 (80)
Confidence 8 6799999865555554
No 27
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=72.51 E-value=0.87 Score=39.47 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=0.0
Q ss_pred cccccccccccccCCCCCCCCCCCCccccc
Q 024271 230 KTRICNKWELTGYCPFGNKCHFAHGIQEFC 259 (270)
Q Consensus 230 kt~lC~~f~~~G~C~~G~~CrFaHg~~el~ 259 (270)
+..+|+|- -.|.||.+|.|.|.+..-+
T Consensus 191 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 217 (223)
T 3v33_A 191 RKQPCPYG---RKCTYGIKCRFFHPERPSC 217 (223)
T ss_dssp ------------------------------
T ss_pred CCCCCCCC---cccccCCcceecCCccCCc
Confidence 45789963 3799999999999986543
No 28
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=43.77 E-value=4.9 Score=34.74 Aligned_cols=25 Identities=32% Similarity=0.860 Sum_probs=0.0
Q ss_pred ccccCccccccCCCCCCCCCCCCCcccc
Q 024271 163 KGRHCKKFYTEEGCPYGENCTFLHDEQS 190 (270)
Q Consensus 163 Kt~~C~~f~~~G~C~~G~~C~f~H~~~e 190 (270)
+..+|++ ...|.||.+|+|.|.+..
T Consensus 191 ~~~~~~~---~~~~~~~~~~~~~~~~~~ 215 (223)
T 3v33_A 191 RKQPCPY---GRKCTYGIKCRFFHPERP 215 (223)
T ss_dssp ----------------------------
T ss_pred CCCCCCC---CcccccCCcceecCCccC
Confidence 5677954 357999999999998754
Done!