BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024272
         (270 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ME9|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
 pdb|3ME9|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
 pdb|3MET|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me2
 pdb|3MET|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me2
 pdb|3MEU|A Chain A, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
 pdb|3MEU|B Chain B, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
 pdb|3MEV|A Chain A, Crystal Structure Of Sgf29 In Complex With R2ak4me3
 pdb|3MEV|B Chain B, Crystal Structure Of Sgf29 In Complex With R2ak4me3
          Length = 180

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 11/104 (10%)

Query: 133 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSFII 192
           G++VAARV A + D ++W + +V+ +   T ++EV             + ++ L    +I
Sbjct: 46  GDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRVI 98

Query: 193 PFP--KRNDSSIPE--FPPGRHVLAVYPGTTALYKATVVSTPRK 232
           P P  K N  + PE  F   + VLA+YP TT  Y+A + + P++
Sbjct: 99  PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQR 142


>pdb|3LX7|A Chain A, Crystal Structure Of A Novel Tudor Domain-Containing
           Protein Sgf29
          Length = 174

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 11/104 (10%)

Query: 133 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSFII 192
           G++VAARV A + D ++W + +V+ +   T ++EV             + ++ L    +I
Sbjct: 40  GDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRVI 92

Query: 193 PFP--KRNDSSIPE--FPPGRHVLAVYPGTTALYKATVVSTPRK 232
           P P  K N  + PE  F   + VLA+YP TT  Y+A + + P++
Sbjct: 93  PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQR 136


>pdb|3MEA|A Chain A, Crystal Structure Of The Sgf29 In Complex With H3k4me3
          Length = 180

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 11/104 (10%)

Query: 133 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSFII 192
           G++VAARV A + D ++W + +V+ +   T ++EV             + ++ L    +I
Sbjct: 48  GDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRVI 100

Query: 193 PFP--KRNDSSIPE--FPPGRHVLAVYPGTTALYKATVVSTPRK 232
           P P  K N  + PE  F   + VLA+YP TT  Y+A + + P++
Sbjct: 101 PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQR 144


>pdb|3MEW|A Chain A, Crystal Structure Of Novel Tudor Domain-Containing Protein
           Sgf29
          Length = 159

 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 32/104 (30%), Positives = 55/104 (52%), Gaps = 11/104 (10%)

Query: 133 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSFII 192
           G++VAARV A + D ++W + +V+ +   T ++EV             + ++ L    +I
Sbjct: 31  GDKVAARVKAVDGD-EQWILAEVVSYSHATNKYEV------DDIDEEGKERHTLSRRRVI 83

Query: 193 PFP--KRNDSSIPE--FPPGRHVLAVYPGTTALYKATVVSTPRK 232
           P P  K N  + PE  F   + VLA+YP TT  Y+A + + P++
Sbjct: 84  PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQR 127


>pdb|3MP1|A Chain A, Complex Structure Of Sgf29 And Trimethylated H3k4
 pdb|3MP6|A Chain A, Complex Structure Of Sgf29 And Dimethylated H3k4
 pdb|3MP8|A Chain A, Crystal Structure Of Sgf29 Tudor Domain
          Length = 522

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 43/103 (41%), Gaps = 9/103 (8%)

Query: 131 LKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLXXXXXXXXXXXVQRKYKLHMSF 190
           L G +VA +    +AD  EW   +V+    +   FEV               K       
Sbjct: 389 LVGSEVAYKPRRGSAD-GEWIQCEVLKVVADGTRFEVRDPEPDELGNSGKVYKCNRKELL 447

Query: 191 IIP--FPKRNDSSIPEFPPGRHVLAVYPGTTALYKATVVSTPR 231
           +IP  FP +N      +PPG  VLA YP TT  Y A V+ T R
Sbjct: 448 LIPPGFPTKN------YPPGTKVLARYPETTTFYPAIVIGTKR 484


>pdb|2RFB|A Chain A, Crystal Structure Of A Cytochrome P450 From The
           Thermoacidophilic Archaeon Picrophilus Torridus
 pdb|2RFB|B Chain B, Crystal Structure Of A Cytochrome P450 From The
           Thermoacidophilic Archaeon Picrophilus Torridus
 pdb|2RFB|C Chain C, Crystal Structure Of A Cytochrome P450 From The
           Thermoacidophilic Archaeon Picrophilus Torridus
 pdb|2RFC|A Chain A, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
           Cytochrome P450 From The Thermoacidophilic Archaeon
           Picrophilus Torridus
 pdb|2RFC|B Chain B, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
           Cytochrome P450 From The Thermoacidophilic Archaeon
           Picrophilus Torridus
 pdb|2RFC|C Chain C, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
           Cytochrome P450 From The Thermoacidophilic Archaeon
           Picrophilus Torridus
 pdb|2RFC|D Chain D, Ligand Bound (4-Phenylimidazole) Crystal Structure Of A
           Cytochrome P450 From The Thermoacidophilic Archaeon
           Picrophilus Torridus
          Length = 343

 Score = 29.3 bits (64), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 3/96 (3%)

Query: 51  DNSLTKLKSLYIQAKELSENEVHVSNLLVGQLDALLPSGAMGQQRRRIEGGDQKRKRMKN 110
           D  L KL S YI   +  EN  +V+N +V +L  +  S + G     + G   K +++  
Sbjct: 117 DMPLFKLWSDYIIGNKRDENFNYVNNRMVSRLLEIFKSDSHGII-NVLAGSSLKNRKLTM 175

Query: 111 DSDISRLSPSMRNQLDTCASLKGEQVAARVTAENAD 146
           D  I  +   +    +T  +L G  +  RV  EN D
Sbjct: 176 DEKIKYIMLLIIGGNETTTNLIGNMI--RVIDENPD 209


>pdb|3U5C|H Chain H, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome A
 pdb|3U5G|H Chain H, The Structure Of The Eukaryotic Ribosome At 3.0 A
           Resolution. This Entry Contains Proteins Of The 40s
           Subunit, Ribosome B
          Length = 190

 Score = 28.1 bits (61), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 12/62 (19%), Positives = 32/62 (51%)

Query: 83  DALLPSGAMGQQRRRIEGGDQKRKRMKNDSDISRLSPSMRNQLDTCASLKGEQVAARVTA 142
           D + P+  +G++ R + GG++ +K + +  D+ ++   + +       L G+Q+   + +
Sbjct: 128 DLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPS 187

Query: 143 EN 144
           E 
Sbjct: 188 ET 189


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.316    0.132    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,085,680
Number of Sequences: 62578
Number of extensions: 251685
Number of successful extensions: 675
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 668
Number of HSP's gapped (non-prelim): 11
length of query: 270
length of database: 14,973,337
effective HSP length: 97
effective length of query: 173
effective length of database: 8,903,271
effective search space: 1540265883
effective search space used: 1540265883
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.3 bits)