BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024272
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P0C606|SGF29_RAT SAGA-associated factor 29 homolog OS=Rattus norvegicus GN=Ccdc101
PE=1 SV=1
Length = 293
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 141/302 (46%), Gaps = 51/302 (16%)
Query: 1 MMSSAPDIADILDKSRELDRLRKEQ----EDVLLEINKMHKKLHNTPEVIEKPGDNSLTK 56
++S+ IA++L + +L + +E+ E L+ I K H+++ ++ TK
Sbjct: 3 LVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKI----SPYYRTK 58
Query: 57 LKSLYIQAKELSENEVHVSNLLVGQLDALLPSGAMGQQRR---RIEG----GDQKRKRMK 109
L+ LY AK +E E N+L LD + ++ ++RR +I G + RK M+
Sbjct: 59 LRGLYTTAKADAEAEC---NILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMR 115
Query: 110 NDSDISRLSPS-MRNQL----------DTCASL---------KGEQVAARVTAENADKDE 149
++ L S M L C ++ G++VAARV A D ++
Sbjct: 116 RGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVEGD-EQ 174
Query: 150 WFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFP--KRNDSSIPE--F 205
W + +V+ + T ++EV D DEEG + ++ L IIP P K N + PE F
Sbjct: 175 WILAEVVSYSHATNKYEVDD----IDEEG--KERHTLSRRRIIPLPQWKANPETDPEALF 228
Query: 206 PPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE-EDGALPQRTVPFHNVVPL 264
+ VLA+YP TT Y+A ++ TP +R DDY + F+D DG P V VV
Sbjct: 229 QKEQLVLALYPQTTCFYRA-LIHTPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVAC 287
Query: 265 PE 266
E
Sbjct: 288 KE 289
>sp|Q9DA08|SGF29_MOUSE SAGA-associated factor 29 homolog OS=Mus musculus GN=Ccdc101 PE=2
SV=1
Length = 293
Score = 74.3 bits (181), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 88/302 (29%), Positives = 141/302 (46%), Gaps = 51/302 (16%)
Query: 1 MMSSAPDIADILDKSRELDRLRKEQ----EDVLLEINKMHKKLHNTPEVIEKPGDNSLTK 56
++S+ IA++L + +L + +E+ E L+ I K H+++ ++ TK
Sbjct: 3 LVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKI----SPYYRTK 58
Query: 57 LKSLYIQAKELSENEVHVSNLLVGQLDALLPSGAMGQQRR---RIEG----GDQKRKRMK 109
L+ LY AK +E E N+L LD + ++ ++RR +I G + RK M+
Sbjct: 59 LRGLYTTAKTDAEAEC---NILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMR 115
Query: 110 NDSDISRLSPS-MRNQL----------DTCASL---------KGEQVAARVTAENADKDE 149
++ L S M L C ++ G++VAARV A D ++
Sbjct: 116 RGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVAKPGDKVAARVKAVEGD-EQ 174
Query: 150 WFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFP--KRNDSSIPE--F 205
W + +V+ + T ++EV D DEEG + ++ L IIP P K N + PE F
Sbjct: 175 WILAEVVSYSHATNKYEVDD----IDEEG--KERHTLSRRRIIPLPQWKANPETDPEALF 228
Query: 206 PPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE-EDGALPQRTVPFHNVVPL 264
+ VLA+YP TT Y+A ++ TP +R DDY + F+D DG P V VV
Sbjct: 229 QKEQLVLALYPQTTCFYRA-LIHTPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVAC 287
Query: 265 PE 266
E
Sbjct: 288 KE 289
>sp|Q96ES7|SGF29_HUMAN SAGA-associated factor 29 homolog OS=Homo sapiens GN=CCDC101 PE=1
SV=1
Length = 293
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 86/302 (28%), Positives = 141/302 (46%), Gaps = 51/302 (16%)
Query: 1 MMSSAPDIADILDKSRELDRLRKEQ----EDVLLEINKMHKKLHNTPEVIEKPGDNSLTK 56
++S+ IA++L + +L + +E+ E L+ I K H+++ ++ TK
Sbjct: 3 LVSADSRIAELLTELHQLIKQTQEERSRSEHNLVNIQKTHERMQTENKI----SPYYRTK 58
Query: 57 LKSLYIQAKELSENEVHVSNLLVGQLDALLPSGAMGQQRR---RIEG----GDQKRKRMK 109
L+ LY AK +E E N+L LD + ++ ++RR +I G + RK M+
Sbjct: 59 LRGLYTTAKADAEAEC---NILRKALDKIAEIKSLLEERRIAAKIAGLYNDSEPPRKTMR 115
Query: 110 NDSDISRLSPS-MRNQL----------DTCASL---------KGEQVAARVTAENADKDE 149
++ L S M L C ++ G++VAARV A + D ++
Sbjct: 116 RGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAIPASGDYVARPGDKVAARVKAVDGD-EQ 174
Query: 150 WFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFP--KRNDSSIPE--F 205
W + +V+ + T ++EV D DEEG + ++ L +IP P K N + PE F
Sbjct: 175 WILAEVVSYSHATNKYEVDD----IDEEG--KERHTLSRRRVIPLPQWKANPETDPEALF 228
Query: 206 PPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE-EDGALPQRTVPFHNVVPL 264
+ VLA+YP TT Y+A ++ P +R DDY + F+D DG P V VV
Sbjct: 229 QKEQLVLALYPQTTCFYRA-LIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYVVAC 287
Query: 265 PE 266
E
Sbjct: 288 KE 289
>sp|Q5ZL38|SGF29_CHICK SAGA-associated factor 29 homolog OS=Gallus gallus GN=CCDC101 PE=2
SV=1
Length = 293
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 88/309 (28%), Positives = 140/309 (45%), Gaps = 57/309 (18%)
Query: 1 MMSSAPDIADILDKSRELDRL-------RKEQEDVLLEINKMHKKLHNTPEVIEKPGDNS 53
++S+ IA++L EL RL R E L+ I K H+++ ++
Sbjct: 3 LVSADSRIAELLA---ELQRLLGHTQEERSRSEHNLINIQKTHERMQTENKI----SPYY 55
Query: 54 LTKLKSLYIQAKELSENEVHVSNLLVGQLDALLPSGAMGQQRR---RIEG----GDQKRK 106
TKL+ LY AK +E E N+L LD + ++ ++RR +I G + RK
Sbjct: 56 RTKLRGLYTTAKADAEAEC---NILRKALDKIAEIKSLLEERRIAAKIAGIYSDAEPPRK 112
Query: 107 RMKNDSDISRLSPS-MRNQL----------DTCASL---------KGEQVAARVTAENAD 146
M+ ++ L S M L C ++ G++VAARV A + D
Sbjct: 113 TMRRGVLMTLLQQSAMTLPLWIGKPGDKPPPLCGAMPAAGDYVAKPGDKVAARVKAVDGD 172
Query: 147 KDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFP--KRNDSSIPE 204
++W + +V+ + ++EV D DEEG + ++ L +IP P K N + PE
Sbjct: 173 -EQWILAEVVSYSHAANKYEVDD----IDEEG--KERHTLSRRRVIPLPQWKANPETDPE 225
Query: 205 --FPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE-EDGALPQRTVPFHNV 261
F + VLA+YP TT Y+A ++ P +R DDY + F+D DG P V V
Sbjct: 226 ALFQREQLVLALYPQTTCFYRA-LIHAPPQRPQDDYSVLFEDTSYADGYSPPLNVAQRYV 284
Query: 262 VPLPEGHRQ 270
V E ++
Sbjct: 285 VACKETKKK 293
>sp|P25554|SGF29_YEAST SAGA-associated factor 29 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=SGF29 PE=1 SV=2
Length = 259
Score = 58.2 bits (139), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 58/121 (47%), Gaps = 16/121 (13%)
Query: 131 LKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMS- 189
L G +VA + +AD EW +V+ + FEV D EP DE G + YK +
Sbjct: 126 LVGSEVAYKPRRGSAD-GEWIQCEVLKVVADGTRFEVRDPEP--DELGNSGKVYKCNRKE 182
Query: 190 -FIIP--FPKRNDSSIPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246
+IP FP +N +PPG VLA YP TT Y A V+ T R L FD +E
Sbjct: 183 LLLIPPGFPTKN------YPPGTKVLARYPETTTFYPAIVIGTKRDGTCR---LRFDGEE 233
Query: 247 E 247
E
Sbjct: 234 E 234
>sp|Q9USW9|SGF29_SCHPO SAGA-associated factor 29 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=sgf29 PE=1 SV=2
Length = 244
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 7/107 (6%)
Query: 143 ENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSI 202
E D + ++KV + + FEV D EP DD G + YK + +I P + + +
Sbjct: 130 EGGDWIQCIIIKVTG-EGAKQRFEVQDPEPDDD--GNAGQIYKTTANHLIQIPAKG-TPL 185
Query: 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDG 249
P P +VLA YP TT Y+A V+ R L F+ +EE G
Sbjct: 186 PPISPKTNVLARYPETTTFYRAEVI---RTLPDGSCKLRFEGEEEVG 229
>sp|O50078|ACEA_HYPME Isocitrate lyase OS=Hyphomicrobium methylovorum GN=aceA PE=1 SV=1
Length = 540
Score = 34.3 bits (77), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 208 GRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 267
G+ A YP TAL A ++ R+ DD L +F D + R FHN++ LP
Sbjct: 408 GKIAEADYPDGTALMSAQYDTSELGREADDRLRQFQVD-----ISARAGVFHNLITLPTF 462
Query: 268 H 268
H
Sbjct: 463 H 463
>sp|F5HAS7|UL92_HCMVM Uncharacterized protein UL92 OS=Human cytomegalovirus (strain
Merlin) GN=UL92 PE=4 SV=1
Length = 201
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1 MMSSAPDIADILDKSRELDRLRKEQED-VLLEINKMHKKLHNTPEVIEKPGDNSLTKLKS 59
+M+ A AD++ + E DRL+K+ ED + NK+ + +HN + S+ +
Sbjct: 99 LMTHAGRYADVIQEVVERDRLKKQVEDSIYFTFNKVFRSMHNVNRI-------SVPVISQ 151
Query: 60 LYIQ 63
L+IQ
Sbjct: 152 LFIQ 155
>sp|P16798|UL92_HCMVA Protein UL92 OS=Human cytomegalovirus (strain AD169) GN=UL92 PE=3
SV=1
Length = 201
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1 MMSSAPDIADILDKSRELDRLRKEQED-VLLEINKMHKKLHNTPEVIEKPGDNSLTKLKS 59
+M+ A AD++ + E DRL+K+ ED + NK+ + +HN + S+ +
Sbjct: 99 LMTHAGRYADVIQEVVERDRLKKQVEDSIYFTFNKVFRSMHNVNRI-------SVPVISQ 151
Query: 60 LYIQ 63
L+IQ
Sbjct: 152 LFIQ 155
>sp|Q6DA54|SYV_ERWCT Valine--tRNA ligase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=valS PE=3 SV=1
Length = 951
Score = 32.3 bits (72), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKP 49
+A ++DK+ ELDRL KE + EI ++ KL N V P
Sbjct: 879 MAGLIDKAAELDRLAKEVAKLEAEIGRIESKLSNEGFVARAP 920
>sp|Q3AF87|SYV_CARHZ Valine--tRNA ligase OS=Carboxydothermus hydrogenoformans (strain
Z-2901 / DSM 6008) GN=valS PE=3 SV=1
Length = 878
Score = 32.0 bits (71), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKPG---DNSLTKLKSLYIQA 64
+ D++D +E +RL KE + VL EI ++++KL+N + + P + KL + Y +
Sbjct: 805 LKDLIDLEKEKERLNKELKKVLAEIERLNQKLNNPGFLAKAPAEVVNKEREKLTAFY-RE 863
Query: 65 KELSENEV 72
KE+ E +
Sbjct: 864 KEVLEQRI 871
>sp|Q00869|ESYN_FUSEQ Enniatin synthase OS=Fusarium equiseti GN=ESYN1 PE=1 SV=2
Length = 3131
Score = 31.6 bits (70), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 107 RMKNDSDISRLSPSMRNQLDTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFE 166
RM+ D+ L+ ++ +L+ R T EN D V+++H DR +KE +
Sbjct: 1131 RMRGPVDVDALTRAL-------LALEQRHETLRTTFENQDG---VGVQIIH-DRLSKELQ 1179
Query: 167 VLDEEPGDDEEGGVQRKYKLH-MSFIIPFPKRNDSSIPEFPPGRHVLAV 214
V+D GD EGG++ YK+ +F I S++ H+L++
Sbjct: 1180 VIDALDGD--EGGLKTLYKVETTTFDITSEAGWSSTLIRLGKDDHILSI 1226
>sp|Q13137|CACO2_HUMAN Calcium-binding and coiled-coil domain-containing protein 2 OS=Homo
sapiens GN=CALCOCO2 PE=1 SV=1
Length = 446
Score = 31.6 bits (70), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 52/102 (50%), Gaps = 21/102 (20%)
Query: 13 DKSRELDRLRKEQEDVLLEIN---KMHKKLHNTPEVIEKPGDNSLTKLKSL----YIQAK 65
DK+ +L++L+KE + + L + K KKL T E +++ ++ K + L + +K
Sbjct: 253 DKTEQLEQLKKENDHLFLSLTEQRKDQKKLEQTVEQMKQNETTAMKKQQELMDENFDLSK 312
Query: 66 ELSENEVHVSNLLVGQLDALLPSGAMGQQRRRIEGGDQKRKR 107
LSENE+ + N A+ +Q+ R+EG + KR
Sbjct: 313 RLSENEI-ICN-------------ALQRQKERLEGENDLLKR 340
>sp|Q66F11|SYV_YERPS Valine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=valS PE=3 SV=1
Length = 965
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKP 49
+A ++DK+ ELDRL KE + EI ++ KL N V P
Sbjct: 893 MAGLIDKATELDRLAKEVAKLDAEIERIEGKLGNEGFVARAP 934
>sp|Q98LB1|SYV_RHILO Valine--tRNA ligase OS=Rhizobium loti (strain MAFF303099) GN=valS
PE=3 SV=1
Length = 927
Score = 31.2 bits (69), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKPGD 51
+ ++D + E RL+KE V EI ++HKKL N V P +
Sbjct: 854 LGSLIDLAAEAARLQKELAKVTEEIARLHKKLSNERFVASAPAE 897
>sp|Q8ZBH1|SYV_YERPE Valine--tRNA ligase OS=Yersinia pestis GN=valS PE=3 SV=1
Length = 965
Score = 31.2 bits (69), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKP 49
+A ++DK+ ELDRL KE + EI ++ KL N V P
Sbjct: 893 MAGLIDKATELDRLAKEVAKLDAEIERIEGKLGNEGFVARAP 934
>sp|Q97GG8|SYV_CLOAB Valine--tRNA ligase OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=valS
PE=3 SV=1
Length = 881
Score = 30.8 bits (68), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 28/42 (66%)
Query: 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKP 49
+ D++D ++E++RL KE++ + EI ++ KKL N V + P
Sbjct: 811 LLDLIDVTKEIERLSKEKDKLKAEIQRVDKKLSNKGFVDKAP 852
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,360,292
Number of Sequences: 539616
Number of extensions: 4891257
Number of successful extensions: 12272
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 73
Number of HSP's that attempted gapping in prelim test: 12214
Number of HSP's gapped (non-prelim): 124
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)