Query 024272
Match_columns 270
No_of_seqs 125 out of 188
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024272.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024272hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mea_A SAGA-associated factor 100.0 6.2E-48 2.1E-52 334.9 16.4 147 113-268 29-180 (180)
2 3mp6_A MBP, SGF29, maltose-bin 100.0 3.8E-38 1.3E-42 306.1 14.7 131 126-266 384-514 (522)
3 3dlm_A Histone-lysine N-methyl 97.8 8.9E-05 3E-09 65.6 10.1 107 128-254 7-119 (213)
4 2l8d_A Lamin-B receptor; DNA b 97.7 3.9E-05 1.3E-09 56.0 4.5 40 204-245 9-48 (66)
5 2dig_A Lamin-B receptor; tudor 97.6 6.6E-05 2.2E-09 55.0 5.1 55 204-266 12-66 (68)
6 2g3r_A Tumor suppressor P53-bi 97.6 5.2E-05 1.8E-09 61.6 4.4 54 206-268 6-62 (123)
7 2equ_A PHD finger protein 20-l 97.4 0.00027 9.4E-09 52.8 5.4 57 202-268 7-63 (74)
8 3p8d_A Medulloblastoma antigen 97.3 0.00031 1E-08 51.7 5.0 55 203-267 5-59 (67)
9 1mhn_A SurviVal motor neuron p 97.2 0.00042 1.5E-08 49.0 5.0 55 204-265 3-57 (59)
10 3qii_A PHD finger protein 20; 97.2 0.0004 1.4E-08 53.3 4.8 56 202-267 19-74 (85)
11 2e5p_A Protein PHF1, PHD finge 97.2 0.00056 1.9E-08 50.2 5.3 44 200-246 5-48 (68)
12 4hcz_A PHD finger protein 1; p 97.1 0.00063 2.1E-08 48.6 4.9 41 203-246 2-42 (58)
13 4a4f_A SurviVal of motor neuro 97.0 0.00066 2.3E-08 48.8 4.1 57 204-267 8-64 (64)
14 3s6w_A Tudor domain-containing 96.8 0.0016 5.3E-08 45.1 4.5 39 205-245 2-40 (54)
15 1g5v_A SurviVal motor neuron p 96.8 0.0017 5.7E-08 50.0 5.0 59 203-268 9-67 (88)
16 2eqj_A Metal-response element- 96.7 0.0024 8.1E-08 46.8 5.3 40 203-245 12-51 (66)
17 2ldm_A Uncharacterized protein 95.7 0.00025 8.4E-09 54.0 0.0 53 204-266 6-58 (81)
18 2d9t_A Tudor domain-containing 96.5 0.0042 1.4E-07 46.4 5.8 60 203-269 8-67 (78)
19 3pnw_C Tudor domain-containing 96.2 0.0046 1.6E-07 46.2 4.0 57 204-267 17-73 (77)
20 2xk0_A Polycomb protein PCL; t 96.0 0.017 5.8E-07 42.5 6.2 40 202-246 13-52 (69)
21 2fhd_A RAD9 homolog, DNA repai 95.9 0.0063 2.2E-07 51.0 4.0 38 209-246 10-50 (153)
22 2e5q_A PHD finger protein 19; 95.8 0.018 6.1E-07 41.6 5.7 41 203-246 6-46 (63)
23 1ssf_A Transformation related 95.6 0.011 3.8E-07 49.8 4.5 39 205-246 9-47 (156)
24 2m0o_A PHD finger protein 1; t 95.5 0.023 7.9E-07 42.7 5.5 41 203-246 25-65 (79)
25 4a4f_A SurviVal of motor neuro 94.9 0.2 6.9E-06 35.6 8.7 59 125-195 4-62 (64)
26 3fdr_A Tudor and KH domain-con 94.7 0.026 9.1E-07 42.7 3.8 40 204-246 27-66 (94)
27 1mhn_A SurviVal motor neuron p 94.3 0.25 8.6E-06 34.4 7.9 56 129-196 3-58 (59)
28 3ask_A E3 ubiquitin-protein li 94.0 0.33 1.1E-05 43.2 10.0 105 130-245 3-135 (226)
29 3pnw_C Tudor domain-containing 93.9 0.26 9E-06 36.5 7.8 56 129-196 17-72 (77)
30 2diq_A Tudor and KH domain-con 93.9 0.072 2.5E-06 41.4 4.8 40 204-246 32-71 (110)
31 2eko_A Histone acetyltransfera 93.1 0.1 3.6E-06 39.9 4.4 46 200-245 5-53 (87)
32 2eqk_A Tudor domain-containing 92.8 0.62 2.1E-05 35.5 8.4 60 124-196 16-75 (85)
33 2d9t_A Tudor domain-containing 92.8 0.72 2.5E-05 34.0 8.7 57 128-196 8-64 (78)
34 2equ_A PHD finger protein 20-l 92.7 0.45 1.5E-05 35.2 7.4 55 127-196 7-61 (74)
35 3s6w_A Tudor domain-containing 92.5 0.64 2.2E-05 31.6 7.4 53 130-194 2-54 (54)
36 2lcc_A AT-rich interactive dom 92.4 0.05 1.7E-06 40.5 1.7 44 202-245 3-48 (76)
37 1g5v_A SurviVal motor neuron p 91.6 0.84 2.9E-05 34.8 7.9 58 128-197 9-66 (88)
38 2qqr_A JMJC domain-containing 90.3 1.2 4.2E-05 35.8 8.1 111 129-266 5-115 (118)
39 3ntk_A Maternal protein tudor; 90.3 0.32 1.1E-05 40.4 4.9 40 204-246 47-86 (169)
40 1ssf_A Transformation related 89.6 2.1 7.2E-05 36.0 9.2 92 130-245 9-101 (156)
41 2wac_A CG7008-PA; unknown func 89.3 0.31 1.1E-05 41.2 4.1 87 149-246 3-89 (218)
42 2g3r_A Tumor suppressor P53-bi 88.5 4.3 0.00015 32.9 10.0 87 131-244 6-96 (123)
43 3m9q_A Protein MALE-specific l 88.5 0.38 1.3E-05 37.8 3.7 62 201-265 16-85 (101)
44 3fdr_A Tudor and KH domain-con 88.1 2.3 8E-05 31.7 7.9 56 128-196 26-81 (94)
45 2rnz_A Histone acetyltransfera 87.8 0.57 1.9E-05 36.3 4.2 44 200-245 21-64 (94)
46 3sd4_A PHD finger protein 20; 87.7 0.66 2.3E-05 33.4 4.3 40 203-245 11-50 (69)
47 3h8z_A FragIle X mental retard 87.3 6.4 0.00022 31.9 10.5 92 133-244 5-100 (128)
48 4b9w_A TDRD1, tudor domain-con 87.2 0.52 1.8E-05 40.1 4.1 40 204-246 65-104 (201)
49 3oa6_A MALE-specific lethal 3 86.4 0.69 2.3E-05 36.9 4.1 59 203-264 18-84 (110)
50 2lrq_A Protein MRG15, NUA4 com 86.2 0.14 4.9E-06 38.8 0.0 62 203-269 11-72 (85)
51 2f5k_A MORF-related gene 15 is 86.1 0.47 1.6E-05 37.3 3.0 58 202-264 20-77 (102)
52 4b9x_A TDRD1, tudor domain-con 85.8 0.51 1.7E-05 40.9 3.4 39 205-246 66-104 (226)
53 3m9p_A MALE-specific lethal 3 85.5 0.6 2.1E-05 37.2 3.4 62 201-265 16-85 (110)
54 2ro0_A Histone acetyltransfera 85.0 1.2 3.9E-05 34.3 4.7 44 200-245 19-62 (92)
55 2xdp_A Lysine-specific demethy 84.4 0.32 1.1E-05 39.5 1.3 40 202-245 4-43 (123)
56 2qqr_A JMJC domain-containing 84.1 0.75 2.6E-05 37.1 3.4 40 202-245 3-42 (118)
57 3qii_A PHD finger protein 20; 84.1 5.5 0.00019 30.2 8.0 55 128-197 20-74 (85)
58 4hcz_A PHD finger protein 1; p 83.7 7 0.00024 27.7 7.8 52 129-194 3-54 (58)
59 3p8d_A Medulloblastoma antigen 82.2 8.2 0.00028 27.9 8.0 54 129-197 6-59 (67)
60 1wgs_A MYST histone acetyltran 81.5 0.99 3.4E-05 36.8 3.2 42 202-244 10-53 (133)
61 2diq_A Tudor and KH domain-con 80.6 3.8 0.00013 31.4 6.2 55 129-196 32-86 (110)
62 3dlm_A Histone-lysine N-methyl 79.3 0.87 3E-05 40.2 2.3 43 202-245 6-48 (213)
63 2ldm_A Uncharacterized protein 80.1 0.41 1.4E-05 36.2 0.0 54 129-197 6-59 (81)
64 2e5p_A Protein PHF1, PHD finge 78.4 14 0.00047 26.9 8.0 54 129-196 9-62 (68)
65 2wac_A CG7008-PA; unknown func 77.9 9.3 0.00032 31.9 8.3 54 129-196 51-104 (218)
66 2m0o_A PHD finger protein 1; t 77.0 12 0.00039 28.1 7.4 40 126-170 23-62 (79)
67 2hqx_A P100 CO-activator tudor 76.3 2.1 7.1E-05 37.1 3.8 89 147-246 15-103 (246)
68 4fu6_A PC4 and SFRS1-interacti 75.9 2.9 9.9E-05 34.3 4.4 46 204-250 22-70 (153)
69 1uur_A Stata protein, STAT pro 75.6 6.7 0.00023 38.3 7.5 64 12-78 11-78 (473)
70 2xdp_A Lysine-specific demethy 75.0 1.9 6.6E-05 34.9 3.0 97 129-246 6-102 (123)
71 4b9w_A TDRD1, tudor domain-con 74.4 12 0.00041 31.5 8.1 56 129-197 65-120 (201)
72 2dig_A Lamin-B receptor; tudor 74.2 22 0.00077 25.8 8.6 56 128-196 11-66 (68)
73 4b9x_A TDRD1, tudor domain-con 72.1 14 0.00047 31.7 8.0 56 129-197 65-120 (226)
74 4e61_A Protein BIM1; EB1-like 71.4 11 0.00039 29.6 6.6 49 8-60 3-51 (106)
75 2eqj_A Metal-response element- 70.4 28 0.00095 25.2 7.9 52 128-193 12-63 (66)
76 3e9g_A Chromatin modification- 69.6 6.2 0.00021 32.2 4.8 27 202-230 5-31 (130)
77 2e5q_A PHD finger protein 19; 69.6 17 0.00059 26.0 6.6 53 129-195 7-59 (63)
78 3ask_A E3 ubiquitin-protein li 68.7 3.9 0.00013 36.2 3.8 47 204-250 2-55 (226)
79 3db3_A E3 ubiquitin-protein li 66.6 32 0.0011 28.9 8.8 92 127-229 8-122 (161)
80 1ri0_A Hepatoma-derived growth 66.4 6.2 0.00021 30.8 4.2 45 202-247 17-64 (110)
81 3bdl_A Staphylococcal nuclease 61.4 5.9 0.0002 38.9 3.8 39 204-246 411-449 (570)
82 2eqm_A PHD finger protein 20-l 60.4 11 0.00037 28.4 4.4 40 203-245 18-57 (88)
83 3qby_A Hepatoma-derived growth 60.3 14 0.00048 27.9 5.0 46 204-250 5-53 (94)
84 3h8z_A FragIle X mental retard 60.1 37 0.0013 27.3 7.8 64 128-199 59-122 (128)
85 2gfu_A DNA mismatch repair pro 58.2 21 0.0007 28.5 6.0 60 202-267 20-87 (134)
86 1at0_A 17-hedgehog; developmen 57.0 41 0.0014 26.9 7.7 98 129-239 20-126 (145)
87 1xou_B Z5138 gene product; coi 56.4 36 0.0012 25.5 6.5 62 16-87 22-83 (95)
88 2hqx_A P100 CO-activator tudor 55.8 38 0.0013 28.9 7.8 54 129-196 65-118 (246)
89 3ntk_A Maternal protein tudor; 54.7 36 0.0012 27.8 7.1 53 129-196 47-99 (169)
90 2daq_A WHSC1L1 protein, isofor 54.4 12 0.00039 28.8 3.7 46 203-249 7-60 (110)
91 1h3z_A Hypothetical 62.8 kDa p 52.2 15 0.00051 28.2 4.1 57 202-264 4-70 (109)
92 3mea_A SAGA-associated factor 48.5 44 0.0015 28.5 6.7 63 128-196 115-178 (180)
93 2eqk_A Tudor domain-containing 46.4 24 0.00082 26.7 4.2 39 204-245 21-59 (85)
94 3pfs_A Bromodomain and PHD fin 46.4 49 0.0017 27.6 6.6 28 202-230 34-61 (158)
95 3l42_A Peregrin; transcription 42.6 44 0.0015 27.0 5.6 28 202-230 3-30 (130)
96 3sd4_A PHD finger protein 20; 40.4 76 0.0026 22.2 6.0 39 125-168 8-46 (69)
97 1khc_A DNA cytosine-5 methyltr 40.0 25 0.00087 28.7 3.8 45 203-248 10-58 (147)
98 3db3_A E3 ubiquitin-protein li 38.1 27 0.00093 29.4 3.7 49 203-251 9-73 (161)
99 1rso_B MLIN-2/CASK, peripheral 36.7 45 0.0016 22.8 4.1 39 3-41 4-54 (56)
100 2l8d_A Lamin-B receptor; DNA b 36.5 1.2E+02 0.004 21.9 8.8 56 128-196 8-63 (66)
101 3mp6_A MBP, SGF29, maltose-bin 35.8 64 0.0022 30.4 6.5 59 128-196 456-514 (522)
102 3bdl_A Staphylococcal nuclease 35.5 95 0.0032 30.2 7.8 55 128-196 410-464 (570)
103 2k3y_A Chromatin modification- 33.4 28 0.00097 28.4 3.0 26 203-230 8-33 (136)
104 2xk0_A Polycomb protein PCL; t 32.2 1.4E+02 0.0049 21.6 8.0 51 128-194 14-64 (69)
105 2yy0_A C-MYC-binding protein; 32.0 77 0.0026 21.6 4.6 37 5-41 15-51 (53)
106 4afl_A P29ING4, inhibitor of g 31.1 1.6E+02 0.0056 21.9 8.1 35 52-86 62-96 (104)
107 2yrv_A AT-rich interactive dom 30.9 23 0.0008 28.3 2.1 21 210-230 15-37 (117)
108 2w4y_A Caulobacter 5 virus-lik 30.6 22 0.00077 27.4 1.8 48 215-263 34-87 (122)
109 3ilk_A Uncharacterized tRNA/RR 29.7 1E+02 0.0036 26.9 6.3 32 52-84 204-235 (244)
110 3vem_A Helicase protein MOM1; 29.2 2E+02 0.0068 22.8 7.2 22 14-39 37-58 (115)
111 2p22_C Protein SRN2; endosome, 27.3 1.2E+02 0.0039 25.9 6.0 68 11-78 81-150 (192)
112 2lcc_A AT-rich interactive dom 27.2 73 0.0025 23.1 4.1 39 128-168 4-44 (76)
113 2l89_A PWWP domain-containing 26.7 27 0.00092 26.9 1.7 44 202-246 3-54 (108)
114 3llr_A DNA (cytosine-5)-methyl 25.5 76 0.0026 26.2 4.4 57 203-265 15-75 (154)
115 2eqm_A PHD finger protein 20-l 24.9 1.8E+02 0.006 21.6 6.0 39 126-169 16-54 (88)
116 2bud_A Males-absent on the fir 24.1 79 0.0027 24.1 3.9 38 207-245 17-57 (92)
117 3qr8_A GPV, baseplate assembly 24.1 3.2E+02 0.011 22.9 8.7 81 150-245 18-107 (211)
118 1deq_A Fibrinogen (alpha chain 22.6 2.5E+02 0.0087 26.6 7.8 70 8-78 69-139 (390)
119 1wgs_A MYST histone acetyltran 21.2 1.1E+02 0.0039 24.4 4.5 35 129-168 12-50 (133)
120 1wjq_A KIAA1798 protein; MBT d 20.2 1.4E+02 0.0046 23.2 4.6 38 204-245 13-51 (107)
121 2ro0_A Histone acetyltransfera 20.1 1.5E+02 0.005 22.4 4.7 38 127-170 21-60 (92)
No 1
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=100.00 E-value=6.2e-48 Score=334.91 Aligned_cols=147 Identities=30% Similarity=0.509 Sum_probs=121.0
Q ss_pred CCCCCCccccccccccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCcee
Q 024272 113 DISRLSPSMRNQLDTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFII 192 (270)
Q Consensus 113 ~~s~l~~~~~~~~~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~II 192 (270)
.++.||.++. ..+...+++|++|||+++..+ ++++||||+|++|++++++|||+|+|+ ++ +++|++++++||
T Consensus 29 ~~p~lcGa~p-~~~~~~~~~G~~VAakvk~~~-~~~~WILa~Vv~~~~~~~rYeV~D~d~----eg--~~~~~~s~~~II 100 (180)
T 3mea_A 29 KPPPLCGAIP-ASGDYVARPGDKVAARVKAVD-GDEQWILAEVVSYSHATNKYEVDDIDE----EG--KERHTLSRRRVI 100 (180)
T ss_dssp CCCTTBTTCC-CCTTCCCCTTCEEEEEEECCC---EEEEEEEEEEEETTTTEEEEEECCT----TC--CEEEEEEGGGEE
T ss_pred CCCCcccccc-CCCCcccCCCCEEEEEcCCCC-CCccEEEEEEEEEcCCCCEEEEecCCC----CC--ceeEEeCHHHEE
Confidence 3455664443 245678999999999998643 357999999999999999999999964 23 568999999999
Q ss_pred ecCCCCC--CC--CCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC-CCCCCCCcccccCceEeeCCCC
Q 024272 193 PFPKRND--SS--IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD-EEDGALPQRTVPFHNVVPLPEG 267 (270)
Q Consensus 193 PLP~~~~--~~--~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd-~~~G~~P~~~Vp~ryVv~~p~~ 267 (270)
|||++.+ ++ .+.|++|++||||||+|||||+|+|+++|+ +.+++|+|+|||| +++|++|++.||+||||+||++
T Consensus 101 PLP~~~a~p~t~~~~~f~~G~~VLAlYP~TT~FY~A~V~~~p~-~~~~~y~L~FEdde~~dG~sp~~~V~~RyVv~~ke~ 179 (180)
T 3mea_A 101 PLPQWKANPETDPEALFQKEQLVLALYPQTTCFYRALIHAPPQ-RPQDDYSVLFEDTSYADGYSPPLNVAQRYVVACKEP 179 (180)
T ss_dssp ECCSBBCCTTTCGGGSCCTTCEEEEECTTSSEEEEEEEEECCS-STTCCEEEEEBCTTSTTSBCCCEEECGGGEEEC---
T ss_pred ECCCcCCCcccCccccCCCCCEEEEeCCCCceeeEEEEecCCC-CCCCcEEEEEcCCCccCCCCCCcEecceEEEccCCC
Confidence 9998753 44 456999999999999999999999999985 4568899999999 5899999999999999999997
Q ss_pred C
Q 024272 268 H 268 (270)
Q Consensus 268 ~ 268 (270)
+
T Consensus 180 ~ 180 (180)
T 3mea_A 180 K 180 (180)
T ss_dssp -
T ss_pred C
Confidence 4
No 2
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=100.00 E-value=3.8e-38 Score=306.08 Aligned_cols=131 Identities=31% Similarity=0.487 Sum_probs=108.1
Q ss_pred cccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCCCCCCCC
Q 024272 126 DTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEF 205 (270)
Q Consensus 126 ~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~~~~~~f 205 (270)
++.++++|++|||+++.. +++++||||+|++|+++++||||+|+|||++++. +++|++|+++|||||.. ...+.|
T Consensus 384 ~~~~~~~~~~~~~~~~~~-~~~~~wi~~~~~~~~~~~~~y~v~d~~~~~~~~~--~~~~~~~~~~~~~~p~~--~~~~~~ 458 (522)
T 3mp6_A 384 PNAPILVGSEVAYKPRRG-SADGEWIQCEVLKVVADGTRFEVRDPEPDELGNS--GKVYKCNRKELLLIPPG--FPTKNY 458 (522)
T ss_dssp CCCCBCTTCEEEECCC------CCEEEEEEEEEETTTTEEEEEECSCBTTBTT--CEEEEECGGGEEEECSS--CCCCCC
T ss_pred cccccCCCCEEEEecCCC-CCCCCEEEEEEEEEeCCCCEEEEeCCCCCCCCCC--CeeEEccHHHEEECCCC--CcccCC
Confidence 466789999999999854 3568999999999999999999999999765443 47999999999999963 235679
Q ss_pred CCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCC
Q 024272 206 PPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPE 266 (270)
Q Consensus 206 ~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~ 266 (270)
++|++||||||+|||||||+|+++|+. ++|+|+||||++. .+.+.|++||||++|.
T Consensus 459 ~~~~~v~a~~p~tt~fy~a~v~~~~~~---~~~~~~f~~~~~~--~~~~~~~~~~v~~~~~ 514 (522)
T 3mp6_A 459 PPGTKVLARYPETTTFYPAIVIGTKRD---GTCRLRFDGEEEV--DKETEVTRRLVLPSPT 514 (522)
T ss_dssp CTTCEEEEECTTCSEEEEEEEEEECTT---SCEEEEETTC------CCEEECGGGEEECHH
T ss_pred CCCCEEEEECCCCcceEeEEEecCCCC---CeEEEEecCCCCC--CccccccceeEEecCc
Confidence 999999999999999999999998743 5799999999644 4678999999999984
No 3
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=97.83 E-value=8.9e-05 Score=65.63 Aligned_cols=107 Identities=20% Similarity=0.291 Sum_probs=77.9
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeC--CCCeEEEecCCCCCCCCCcceeEEEeecCceeec--CCCCCCCCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDR--ETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPF--PKRNDSSIP 203 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~--~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPL--P~~~~~~~~ 203 (270)
..++.|+.|-++-. ...|.-|+|+.+-. ++.+|+|.=- +++ +. .+|.++|.-= |. .-
T Consensus 7 ~~l~Vg~~vlg~k~-----~~~W~rg~v~~I~~~~~g~~YkVkF~------~~g-~~--ivs~~hiA~~~~p~-----~~ 67 (213)
T 3dlm_A 7 GDLIVSMRILGKKR-----TKTWHKGTLIAIQTVGPGKKYKVKFD------NKG-KS--LLSGNHIAYDYHPP-----AD 67 (213)
T ss_dssp TTEETTCEEEEECT-----TSBEEEEEEEEEEEETTEEEEEEEES------SSC-EE--EECGGGEEESSCCC-----GG
T ss_pred CcEEEccEEEEEec-----CCcEEEEEEEEEEECCCCeEEEEEEc------CCC-CE--EeecceEEEecCCC-----cc
Confidence 35789999999864 47899999999643 4677999753 111 22 5777777651 21 12
Q ss_pred CCCCCCeEEEeCCCCC--ccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcc
Q 024272 204 EFPPGRHVLAVYPGTT--ALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQR 254 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT--~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~ 254 (270)
.++.|++|.|+|.+.+ .||.++|..+|.......|.|-|||-++ +|.++.
T Consensus 68 ~l~vG~RVVA~~~~~~~~~fY~GiVaE~p~~~N~~RyLVFFDDG~~-~Yv~~~ 119 (213)
T 3dlm_A 68 KLYVGSRVVAKYKDGNQVWLYAGIVAETPNVKNKLRFLIFFDDGYA-SYVTQS 119 (213)
T ss_dssp GCCTTCEEEEEEECSSCEEEEEEEEEECCCTTTTSCEEEEETTSCE-EEECGG
T ss_pred EEeEEEEEEEEecCCCCcceeeeEEEECCccCCCceEEEEEeCCCc-ceecCc
Confidence 5999999999999976 8999999999975556679999987542 454443
No 4
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=97.69 E-value=3.9e-05 Score=56.04 Aligned_cols=40 Identities=23% Similarity=0.529 Sum_probs=35.7
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
.|+.|+.|||.||+...||+|.|.+-- ...+.|.|+|-|+
T Consensus 9 ~~~vgd~VmaRW~Gd~~yYparI~Si~--s~~~~Y~V~fKdg 48 (66)
T 2l8d_A 9 KYADGEVVMGRWPGSVLYYEVQVTSYD--DASHLYTVKYKDG 48 (66)
T ss_dssp SSCSSCEEEEECTTSSCEEEEEEEEEE--TTTTEEEEEETTS
T ss_pred EeecCCEEEEEcCCCccceEEEEEEec--cCCceEEEEecCC
Confidence 499999999999999999999999984 4567899999774
No 5
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=97.64 E-value=6.6e-05 Score=55.04 Aligned_cols=55 Identities=18% Similarity=0.432 Sum_probs=42.4
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPE 266 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~ 266 (270)
.|+.|+.|||.||+...||+|.|.+-- ...+.|.|+|-|+- ...+.++.+=++|.
T Consensus 12 ~f~vgd~VmaRW~Gd~~yYparItSit--s~~~~Y~VkfKdgT------~e~L~~kDIKp~~~ 66 (68)
T 2dig_A 12 KFADGEVVRGRWPGSSLYYEVEILSHD--STSQLYTVKYKDGT------ELELKENDIKSGPS 66 (68)
T ss_dssp SSCSSCEEEEECTTTCCEEEEEEEEEE--TTTTEEEEECTTSC------EEEEETTTEECCCC
T ss_pred EeecCCEEEEEccCCccceEEEEEEec--cCCceEEEEecCCC------EEEechhccccCCC
Confidence 499999999999999999999999984 45678999997742 12455555555553
No 6
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=97.59 E-value=5.2e-05 Score=61.65 Aligned_cols=54 Identities=22% Similarity=0.357 Sum_probs=44.8
Q ss_pred CCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEe---eCCCCC
Q 024272 206 PPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVV---PLPEGH 268 (270)
Q Consensus 206 ~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv---~~p~~~ 268 (270)
..|.+|||.|++-.-||+++|.+. +..+.|+|+|||.+ .+.|..++|| ++|.|+
T Consensus 6 ~~G~rV~AkWsdn~~yYpG~V~~~---~~~~ky~V~FdDg~------~~~v~~k~iiv~d~ip~g~ 62 (123)
T 2g3r_A 6 FVGLRVVAKWSSNGYFYSGKITRD---VGAGKYKLLFDDGY------ECDVLGKDILLCDPIPLDT 62 (123)
T ss_dssp CTTCEEEEECTTTCCEEEEEEEEE---EETTEEEEEETTSC------EEEEEGGGEECCSSCCTTC
T ss_pred ccceEEEEEeccCCcCcccEEEEe---ccCCeEEEEEcCCC------eeEeecceEEEecccCCCc
Confidence 469999999999999999999885 23466999999975 3568899999 888775
No 7
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.35 E-value=0.00027 Score=52.78 Aligned_cols=57 Identities=21% Similarity=0.365 Sum_probs=45.1
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEGH 268 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~~~ 268 (270)
...|++|+.|||.|. --.||+|+|.+... .+.|.|.|+|-. ...|+...+-++|+..
T Consensus 7 ~~~~kvGd~clA~ws-Dg~~Y~A~I~~v~~---~~~~~V~f~Dyn------~e~v~~~~lrplp~~~ 63 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-DCRYYPAKIEAINK---EGTFTVQFYDGV------IRCLKRMHIKAMPEDA 63 (74)
T ss_dssp CCCCCTTCEEEEECS-SSSEEEEEEEEEST---TSSEEEEETTSC------EEEECGGGEECCCGGG
T ss_pred CCCCCCCCEEEEECC-CCCEEEEEEEEECC---CCEEEEEEecCC------eEEecHHHCeeCChhH
Confidence 446999999999999 67999999999852 267999998752 2357888888887643
No 8
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=97.29 E-value=0.00031 Score=51.72 Aligned_cols=55 Identities=25% Similarity=0.425 Sum_probs=42.0
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 267 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~~ 267 (270)
|.|..|+.|||.| .---||+|+|.+.-. .+.|.|.|.|. . ...|....|-++|..
T Consensus 5 ~~~~vGd~vmArW-~D~~yYpA~I~si~~---~~~Y~V~F~dG----~--~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 5 SEFQINEQVLACW-SDCRFYPAKVTAVNK---DGTYTVKFYDG----V--VQTVKHIHVKAFSKD 59 (67)
T ss_dssp CCCCTTCEEEEEC-TTSCEEEEEEEEECT---TSEEEEEETTS----C--EEEEEGGGEEECC--
T ss_pred cccccCCEEEEEc-CCCCEeeEEEEEECC---CCeEEEEEeCC----c--eEEEeHHHcccCCcc
Confidence 6799999999999 777899999999852 36799999873 2 135777777777654
No 9
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=97.23 E-value=0.00042 Score=48.96 Aligned_cols=55 Identities=13% Similarity=0.239 Sum_probs=41.0
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLP 265 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p 265 (270)
.|++|+.|+|.|.+--+||||+|.+.. ...+.|.|.|.|-. .+ -.||..-+-++|
T Consensus 3 ~~~~G~~c~A~~s~Dg~wYrA~I~~i~--~~~~~~~V~f~DYG---n~--e~v~~~~Lr~~~ 57 (59)
T 1mhn_A 3 QWKVGDKCSAIWSEDGCIYPATIASID--FKRETCVVVYTGYG---NR--EEQNLSDLLSPI 57 (59)
T ss_dssp CCCTTCEEEEECTTTSCEEEEEEEEEE--TTTTEEEEEETTTT---EE--EEEEGGGCBCTT
T ss_pred cCCcCCEEEEEECCCCCEEEEEEEEEc--CCCCEEEEEEEcCC---CE--EEEcHHHeeCCC
Confidence 589999999999988899999999873 22467999998842 11 246655555554
No 10
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=97.19 E-value=0.0004 Score=53.31 Aligned_cols=56 Identities=25% Similarity=0.427 Sum_probs=41.2
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 267 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~~ 267 (270)
.+.|..|+.|||.| .---||+|+|.+.-. .+.|.|+|.|. .+ ..|....|-++|..
T Consensus 19 ~~~f~vGd~VlArW-~D~~yYPAkI~sV~~---~~~YtV~F~DG----~~--etvk~~~IKp~~~~ 74 (85)
T 3qii_A 19 SSEFQINEQVLACW-SDCRFYPAKVTAVNK---DGTYTVKFYDG----VV--QTVKHIHVKAFSKD 74 (85)
T ss_dssp --CCCTTCEEEEEC-TTSCEEEEEEEEECT---TSEEEEEETTS----CE--EEEEGGGEEECC--
T ss_pred CcccccCCEEEEEe-CCCCEeeEEEEEECC---CCeEEEEEeCC----Ce--EEecHHHcccCChh
Confidence 45799999999999 777899999998842 36799999873 21 35677777777653
No 11
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00056 Score=50.18 Aligned_cols=44 Identities=32% Similarity=0.467 Sum_probs=37.7
Q ss_pred CCCCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 200 SSIPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 200 ~~~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
.+.+.|..|+.|||.|-| --||.++|...- .....|.|+|+|+.
T Consensus 5 ~~~~~f~eGqdVLarWsD-GlfYlGtV~kV~--~~~~~ClV~FeD~s 48 (68)
T 2e5p_A 5 SSGPRLWEGQDVLARWTD-GLLYLGTIKKVD--SAREVCLVQFEDDS 48 (68)
T ss_dssp CCCCCCCTTCEEEEECTT-SSEEEEEEEEEE--TTTTEEEEEETTTE
T ss_pred CCCcccccCCEEEEEecC-CcEEEeEEEEEe--cCCcEEEEEEccCC
Confidence 567899999999999999 789999999984 33467999999973
No 12
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=97.12 E-value=0.00063 Score=48.62 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=35.1
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
|.|..|+.|||.+-+ --||.|+|+..- .....|.|+|+|..
T Consensus 2 ~~f~~GedVLarwsD-G~fYlGtI~~V~--~~~~~clV~F~D~s 42 (58)
T 4hcz_A 2 PRLWEGQDVLARWTD-GLLYLGTIKKVD--SAREVCLVQFEDDS 42 (58)
T ss_dssp CSCCTTCEEEEECTT-SCEEEEEEEEEE--TTTTEEEEEETTSC
T ss_pred CccccCCEEEEEecC-CCEEeEEEEEEe--cCCCEEEEEEcCCC
Confidence 679999999999999 789999999974 23457999999974
No 13
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=96.98 E-value=0.00066 Score=48.82 Aligned_cols=57 Identities=19% Similarity=0.373 Sum_probs=44.4
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 267 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~~ 267 (270)
.+.+|+.|+|+|.+--+||||+|.+... ..+.|.|.|.|-. .. -.||..-+-++++|
T Consensus 8 ~~~vGd~c~A~~s~Dg~wYrA~I~~v~~--~~~~~~V~fvdYG---n~--e~V~~~~Lrpl~~~ 64 (64)
T 4a4f_A 8 SWKVGDKCMAVWSEDGQCYEAEIEEIDE--ENGTAAITFAGYG---NA--EVTPLLNLKPVEEG 64 (64)
T ss_dssp CCCTTCEEEEECTTTSSEEEEEEEEEET--TTTEEEEEETTTT---EE--EEEEGGGEECCSCC
T ss_pred CCCCCCEEEEEECCCCCEEEEEEEEEcC--CCCEEEEEEEecC---CE--EEEeHHHcEeCCCC
Confidence 5899999999998888999999999742 2357999999863 11 25777777777765
No 14
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=96.78 E-value=0.0016 Score=45.08 Aligned_cols=39 Identities=23% Similarity=0.378 Sum_probs=32.5
Q ss_pred CCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 205 FPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 205 f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
|++|+.++|.|.+=-.+|||+|.+... ..+.|.|.|.|-
T Consensus 2 wk~G~~c~A~~s~Dg~wYrA~I~~i~~--~~~~~~V~fvDY 40 (54)
T 3s6w_A 2 WKPGDECFALYWEDNKFYRAEVEALHS--SGMTAVVKFIDY 40 (54)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEC----CCSEEEEEETTT
T ss_pred CCCCCEEEEEECCCCCEEEEEEEEEeC--CCCEEEEEEEcc
Confidence 789999999998888999999999742 236799999885
No 15
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=96.76 E-value=0.0017 Score=49.98 Aligned_cols=59 Identities=12% Similarity=0.217 Sum_probs=42.7
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEGH 268 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~~~ 268 (270)
..+.+|+.|||+|.+--+||||+|.+.-. ..+.|.|.|.|-.. .-.||...+.+++..+
T Consensus 9 ~~~kvGd~C~A~ys~Dg~wYrA~I~~i~~--~~~~~~V~fiDYGN-----~E~V~~~~Lrp~~~~~ 67 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSEDGCIYPATIASIDF--KRETCVVVYTGYGN-----REEQNLSDLLSPICEV 67 (88)
T ss_dssp CCCCSSCEEEEECTTTCCEEEEEEEEEET--TTTEEEEEETTTCC-----EEEEEGGGCBCCC---
T ss_pred CCCCCCCEEEEEECCCCCEEEEEEEEecC--CCCEEEEEEecCCC-----EEEEcHHHcccCChhh
Confidence 45899999999999889999999999742 23679999977531 1246666666666543
No 16
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=96.72 E-value=0.0024 Score=46.81 Aligned_cols=40 Identities=23% Similarity=0.391 Sum_probs=33.3
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
..|..|+.|||.| -==-||.|+|.+.- ...+.|.|+|+|.
T Consensus 12 ~~f~vGddVLA~w-tDGl~Y~gtI~~V~--~~~gtC~V~F~D~ 51 (66)
T 2eqj_A 12 CKFEEGQDVLARW-SDGLFYLGTIKKIN--ILKQSCFIIFEDS 51 (66)
T ss_dssp CCSCTTCEEEEEC-TTSCEEEEEEEEEE--TTTTEEEEEETTT
T ss_pred ccccCCCEEEEEE-ccCcEEEeEEEEEc--cCCcEEEEEEccC
Confidence 4699999999999 23459999999984 3457899999997
No 17
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=95.75 E-value=0.00025 Score=54.05 Aligned_cols=53 Identities=26% Similarity=0.429 Sum_probs=40.1
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPE 266 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~ 266 (270)
.|++|+.|||.|. --.||+|+|.+... .+.|.|.|+|... -.|+...+-++|.
T Consensus 6 ~~kvGd~clAkws-Dg~wY~A~I~~v~~---~~~y~V~F~DGn~------E~V~~s~LrPl~~ 58 (81)
T 2ldm_A 6 EFQINEQVLASWS-DSRFYPAKVTAVNK---DGTYTVKFYDGVV------QTVKHIHVKAFSK 58 (81)
Confidence 4999999999999 77999999999852 3579999987211 2466666665553
No 18
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=96.55 E-value=0.0042 Score=46.35 Aligned_cols=60 Identities=20% Similarity=0.318 Sum_probs=44.8
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEGHR 269 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~~~~ 269 (270)
-.+.+|+.|+|.|.+=-.||||+|..... ..+.|.|.|.|-. . .-.|+..-+-++|....
T Consensus 8 ~~~~~G~~c~A~~s~Dg~wYRA~I~~i~~--~~~~~~V~fiDYG---N--~e~V~~~~Lr~l~~~ll 67 (78)
T 2d9t_A 8 KVWKPGDECFALYWEDNKFYRAEVEALHS--SGMTAVVKFTDYG---N--YEEVLLSNIKPVQTEAW 67 (78)
T ss_dssp CCCCTTCEEEEECTTTCCEEEEEEEEECS--SSSEEEEEETTTT---E--EEEEEGGGEEECCCCCC
T ss_pred cCCCcCCEEEEEECCCCCEEEEEEEEEeC--CCCEEEEEEEcCC---C--eEEEcHHHeEeCCHHHh
Confidence 35899999999999778999999998742 2367999998853 1 12577777777776543
No 19
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=96.15 E-value=0.0046 Score=46.15 Aligned_cols=57 Identities=21% Similarity=0.342 Sum_probs=41.7
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEG 267 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~~ 267 (270)
.+.+|+.|+|.|.+=-.||||+|.+... ..+.|.|.|-|-.. .-.|+..-+-++|..
T Consensus 17 ~~kvGd~C~A~ys~Dg~wYRA~I~~i~~--~~~~~~V~fvDYGN-----~e~V~~~~Lr~l~~~ 73 (77)
T 3pnw_C 17 MWKPGDECFALYWEDNKFYRAEVEALHS--SGMTAVVKFIDYGN-----YEEVLLSNIKPIQTE 73 (77)
T ss_dssp TCCTTCEEEEEETTTTEEEEEEEEEECT--TSSEEEEEETTTCC-----EEEEEGGGEECC---
T ss_pred CCCcCCEEEEEECCCCCEEEEEEEEEeC--CCCEEEEEEEcCCC-----eEEEeHHHeEECChh
Confidence 4899999999998878999999999742 23579999988632 125777777777654
No 20
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=95.98 E-value=0.017 Score=42.51 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=34.3
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
...|..|+.|||.+=| --||-++|+..- ...|.|+|||..
T Consensus 13 a~~~~~geDVL~rw~D-G~fYLGtIVd~~----~~~ClV~FeD~S 52 (69)
T 2xk0_A 13 AVTYALQEDVFIKCND-GRFYLGTIIDQT----SDQYLIRFDDQS 52 (69)
T ss_dssp CCCCCTTCEEEEECTT-SCEEEEEEEEEC----SSCEEEEETTCC
T ss_pred ccccccCCeEEEEecC-CCEEEEEEEecC----CceEEEEecCCc
Confidence 3679999999999988 899999997753 367999999974
No 21
>2fhd_A RAD9 homolog, DNA repair protein RHP9/CRB2; tamdem tudor domains, cell cycle; HET: DNA MSE PO4; 2.40A {Schizosaccharomyces pombe}
Probab=95.87 E-value=0.0063 Score=51.05 Aligned_cols=38 Identities=32% Similarity=0.513 Sum_probs=31.6
Q ss_pred CeEEEeCCC-CCccccEEEecCCCC--CCCCCeEEEecCCC
Q 024272 209 RHVLAVYPG-TTALYKATVVSTPRK--RKTDDYLLEFDDDE 246 (270)
Q Consensus 209 ~~VLAlYP~-TT~FY~A~V~~~p~~--~~~~~Y~L~FeDd~ 246 (270)
.+|+|.|++ -.+||||+.++.+.. ..+..|.|+|||..
T Consensus 10 NrVfAff~G~p~~YYPATcvg~~~~~~~~~~~y~VrFdDs~ 50 (153)
T 2fhd_A 10 NRVLAFFKGYPSFYYPATLVAPVHSAVTSSIMYKVQFDDAT 50 (153)
T ss_dssp GEEEEECCSSSCCEEEEEEEEEECCSSCCBCEEEEEETTSC
T ss_pred ceEEEEcCCCcccccceEEEccCCCcccCCeEEEEEEcCCC
Confidence 589999996 799999999999732 24577999999974
No 22
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.83 E-value=0.018 Score=41.62 Aligned_cols=41 Identities=17% Similarity=0.378 Sum_probs=33.8
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
..|..|+.|||.|-|= -||.|+|...- .....|.|+|+|+.
T Consensus 6 ~~f~eGqdVLarWsDG-lfYlgtV~kV~--~~~~~ClV~FeD~s 46 (63)
T 2e5q_A 6 SGLTEGQYVLCRWTDG-LYYLGKIKRVS--SSKQSCLVTFEDNS 46 (63)
T ss_dssp CCCCTTCEEEEECTTS-CEEEEEECCCC--STTSEEEEEETTSC
T ss_pred cceecCCEEEEEecCC-CEEEEEEEEEe--cCCCEEEEEEccCc
Confidence 4699999999999764 59999999984 33456999999974
No 23
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=95.62 E-value=0.011 Score=49.85 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=33.1
Q ss_pred CCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 205 FPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 205 f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
-..|.+|||.|.+---||+|+|...- ..+.|.|.|||..
T Consensus 9 ~~iG~rVfArWsd~~yyYpG~V~~~~---~~~~Y~V~FdDG~ 47 (156)
T 1ssf_A 9 SFVGLRVVAKWSSNGYFYSGKITRDV---GAGKYKLLFDDGY 47 (156)
T ss_dssp CSTTCEEEECSSCSSEEEEEEEEECC---TTTEEEEECTTSC
T ss_pred chhccEEEEEcCCCCcccccEEEEec---cCCEEEEEEcCCC
Confidence 37899999999998889999999862 3466999999964
No 24
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=95.53 E-value=0.023 Score=42.69 Aligned_cols=41 Identities=29% Similarity=0.502 Sum_probs=33.6
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
..|..|+.|||.+=| --||.++|+..- .....|.|+|+|..
T Consensus 25 ~~f~eGeDVLarwsD-GlfYLGTI~kV~--~~~e~ClV~F~D~S 65 (79)
T 2m0o_A 25 PRLWEGQDVLARWTD-GLLYLGTIKKVD--SAREVCLVQFEDDS 65 (79)
T ss_dssp CCCCTTCEEEBCCTT-SCCCEEEEEEEE--TTTTEEEEEETTSC
T ss_pred ceeccCCEEEEEecC-CCEEeEEEEEec--cCCCEEEEEEcCCC
Confidence 569999999999966 359999999773 33467999999974
No 25
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=94.87 E-value=0.2 Score=35.59 Aligned_cols=59 Identities=10% Similarity=0.045 Sum_probs=47.4
Q ss_pred ccccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecC
Q 024272 125 LDTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFP 195 (270)
Q Consensus 125 ~~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP 195 (270)
++....++|+.++|+-.. ++.|--|+|.+++.+++.|+|.=+|= + ..-.++.+.|.||+
T Consensus 4 ~~~~~~~vGd~c~A~~s~----Dg~wYrA~I~~v~~~~~~~~V~fvdY---G-----n~e~V~~~~Lrpl~ 62 (64)
T 4a4f_A 4 QPTHSWKVGDKCMAVWSE----DGQCYEAEIEEIDEENGTAAITFAGY---G-----NAEVTPLLNLKPVE 62 (64)
T ss_dssp CCSSCCCTTCEEEEECTT----TSSEEEEEEEEEETTTTEEEEEETTT---T-----EEEEEEGGGEECCS
T ss_pred CcCCCCCCCCEEEEEECC----CCCEEEEEEEEEcCCCCEEEEEEEec---C-----CEEEEeHHHcEeCC
Confidence 445567999999999853 57899999999998778999988742 2 24678999999986
No 26
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=94.67 E-value=0.026 Score=42.69 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=34.4
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
...+|+.|+|.|++-..||||.|.+... .+.+.|.|-|-.
T Consensus 27 ~~~~G~~c~a~~~~d~~wyRA~I~~~~~---~~~~~V~fvDyG 66 (94)
T 3fdr_A 27 TVHVGDIVAAPLPTNGSWYRARVLGTLE---NGNLDLYFVDFG 66 (94)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT---TSCEEEEETTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC---CCeEEEEEEcCC
Confidence 4789999999999999999999999842 357999998864
No 27
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=94.29 E-value=0.25 Score=34.41 Aligned_cols=56 Identities=9% Similarity=0.020 Sum_probs=45.2
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
..++|+.++|+-.. ++.|-=|+|.+++.+++.|+|.=+|= + ..-.++.+.|.|||.
T Consensus 3 ~~~~G~~c~A~~s~----Dg~wYrA~I~~i~~~~~~~~V~f~DY---G-----n~e~v~~~~Lr~~~~ 58 (59)
T 1mhn_A 3 QWKVGDKCSAIWSE----DGCIYPATIASIDFKRETCVVVYTGY---G-----NREEQNLSDLLSPIC 58 (59)
T ss_dssp CCCTTCEEEEECTT----TSCEEEEEEEEEETTTTEEEEEETTT---T-----EEEEEEGGGCBCTTC
T ss_pred cCCcCCEEEEEECC----CCCEEEEEEEEEcCCCCEEEEEEEcC---C-----CEEEEcHHHeeCCCC
Confidence 36899999999753 57899999999987678999988741 2 246889999999985
No 28
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=94.03 E-value=0.33 Score=43.21 Aligned_cols=105 Identities=20% Similarity=0.289 Sum_probs=69.2
Q ss_pred cCCCCeeEEeeccCCCCCCCEEEEEEEeEeCC---------CCeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCCC
Q 024272 130 SLKGEQVAARVTAENADKDEWFVVKVMHFDRE---------TKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDS 200 (270)
Q Consensus 130 ~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~---------~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~~ 200 (270)
.++|+.|-|+-.. .+.|+-|.|+++... .--|.|.=.| ..+. ....++.+.|.|-=... .
T Consensus 3 yki~~~vd~~d~~----~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~---~~~~---~~~~~~~~~irprar~~-~ 71 (226)
T 3ask_A 3 YKVNEYVDARDTN----MGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDD---YPEN---GVVQMNSRDVRARARTI-I 71 (226)
T ss_dssp SCTTCEEEEECTT----TCCEEEEEEEEEEECC------CCCEEEEEEETT---CGGG---CEEEEEGGGEEECCCCB-C
T ss_pred cccCceEEeeecC----CCceeEEEEEEEeccccccCCCCCceEEEeeccc---Cccc---Cceeccccccccccccc-C
Confidence 4789999998643 579999999998752 3446654321 2122 25677778887754321 3
Q ss_pred CCCCCCCCCeEEEeC-CCCCc----cccEEEecCCCCCC--------------CCCeEEEecCC
Q 024272 201 SIPEFPPGRHVLAVY-PGTTA----LYKATVVSTPRKRK--------------TDDYLLEFDDD 245 (270)
Q Consensus 201 ~~~~f~kg~~VLAlY-P~TT~----FY~A~V~~~p~~~~--------------~~~Y~L~FeDd 245 (270)
.+.+++.|+.||+-| |++.. +|-|+|..--..+. ...|.+.|.++
T Consensus 72 ~~~~l~~g~~vm~nyn~~~~~~~G~~y~~~I~~~~~~r~~~~~~a~i~l~g~sl~~c~i~f~~e 135 (226)
T 3ask_A 72 KWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRKRETRTARELYANVVLGDDSLNDCRIIFVDE 135 (226)
T ss_dssp CGGGCCTTCEEEEEECTTSTTSCCEEEEEEEEEEEECSSCEEEEEEEECSSSEEEEEEESCTTC
T ss_pred CccccccCcEEEEecccCCccccCceeehhhhhhhhcccccceeeEEEecCCcccceeEEEecc
Confidence 344699999999999 76543 58888776531111 12577888776
No 29
>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}
Probab=93.91 E-value=0.26 Score=36.46 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=44.7
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
..++|+.++|+-.. ++.|-=|+|.+++.+++.|.|.=+|= ++ .-.++.+.|.|||.
T Consensus 17 ~~kvGd~C~A~ys~----Dg~wYRA~I~~i~~~~~~~~V~fvDY---GN-----~e~V~~~~Lr~l~~ 72 (77)
T 3pnw_C 17 MWKPGDECFALYWE----DNKFYRAEVEALHSSGMTAVVKFIDY---GN-----YEEVLLSNIKPIQT 72 (77)
T ss_dssp TCCTTCEEEEEETT----TTEEEEEEEEEECTTSSEEEEEETTT---CC-----EEEEEGGGEECC--
T ss_pred CCCcCCEEEEEECC----CCCEEEEEEEEEeCCCCEEEEEEEcC---CC-----eEEEeHHHeEECCh
Confidence 47899999999853 57899999999987778899998842 22 46799999999995
No 30
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=93.85 E-value=0.072 Score=41.44 Aligned_cols=40 Identities=28% Similarity=0.275 Sum_probs=34.0
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
.+.+|+.|+|.|.+-..||||.|..... .+.|.|.|-|-.
T Consensus 32 ~~~~G~~c~a~~~~d~~wyRA~V~~~~~---~~~~~V~fvDyG 71 (110)
T 2diq_A 32 TVHVGDIVAAPLPTNGSWYRARVLGTLE---NGNLDLYFVDFG 71 (110)
T ss_dssp CCCTTCEEEECCTTTCSCEEEEECCCCS---SSCEEEEETTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC---CCeEEEEEEeCC
Confidence 4789999999999888999999998742 257999999863
No 31
>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.05 E-value=0.1 Score=39.87 Aligned_cols=46 Identities=15% Similarity=0.061 Sum_probs=37.0
Q ss_pred CCCCCCCCCCeEEEeCC---CCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 200 SSIPEFPPGRHVLAVYP---GTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 200 ~~~~~f~kg~~VLAlYP---~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
++.+.|..|++|++.++ ....+|.|+|...-.......|-|.|.|=
T Consensus 5 ~~~~~~~vG~kv~v~~~~~~~~~~~y~AkIl~i~~~~~~~~YyVHY~g~ 53 (87)
T 2eko_A 5 SSGGEIIEGCRLPVLRRNQDNEDEWPLAEILSVKDISGRKLFYVHYIDF 53 (87)
T ss_dssp CSSCSCCTTCEEEBCEECTTCCEECCEEEEEEECCSSSCCCEEEEECSS
T ss_pred cccccccCCCEEEEEEcccCCCCeEEEEEEEEEEEcCCCcEEEEEeCCC
Confidence 45678999999999997 58899999999874333345799999884
No 32
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.84 E-value=0.62 Score=35.54 Aligned_cols=60 Identities=12% Similarity=0.199 Sum_probs=47.3
Q ss_pred cccccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 124 QLDTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 124 ~~~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
.|..+..+.|+.|||+... +.+|-=|+|.+.+.++ +.||.=+|= |+ .-+++..++-|||.
T Consensus 16 ~~~~~~~k~g~~vaak~~d----~n~WyRakV~~v~~~~-~veVl~~Dy---Gn-----~~~V~~~~LR~L~~ 75 (85)
T 2eqk_A 16 KWEPVKWENDMHCAVKIQD----KNQWRRGQIIRMVTDT-LVEVLLYDV---GV-----ELVVNVDCLRKLEE 75 (85)
T ss_dssp CCCCCCCCSSCEEEEECSS----SCCEEEEEEEEECSSS-EEEEECTTT---CC-----EEEEETTTEEECCH
T ss_pred CCcccCccCCCEEEEEeCC----CCeEEEEEEEEecCCC-eEEEEEEcc---CC-----EEEEEccccccCCH
Confidence 3556778999999999873 4599999999998764 599999852 22 35777889999973
No 33
>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1
Probab=92.82 E-value=0.72 Score=34.00 Aligned_cols=57 Identities=12% Similarity=0.045 Sum_probs=46.2
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
...++|+.|+|+-.. ++.|-=|+|++++...+.|.|.=+|= + ..-.++.++|.|||.
T Consensus 8 ~~~~~G~~c~A~~s~----Dg~wYRA~I~~i~~~~~~~~V~fiDY---G-----N~e~V~~~~Lr~l~~ 64 (78)
T 2d9t_A 8 KVWKPGDECFALYWE----DNKFYRAEVEALHSSGMTAVVKFTDY---G-----NYEEVLLSNIKPVQT 64 (78)
T ss_dssp CCCCTTCEEEEECTT----TCCEEEEEEEEECSSSSEEEEEETTT---T-----EEEEEEGGGEEECCC
T ss_pred cCCCcCCEEEEEECC----CCCEEEEEEEEEeCCCCEEEEEEEcC---C-----CeEEEcHHHeEeCCH
Confidence 346899999999753 57899999999987678899998842 2 256889999999996
No 34
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.74 E-value=0.45 Score=35.16 Aligned_cols=55 Identities=25% Similarity=0.253 Sum_probs=43.7
Q ss_pred ccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 127 TCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 127 ~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
....++|+.|.|+-. ++.|.-|+|.+++.+ +.|.|.=. |.+ .-+++.++|.|||.
T Consensus 7 ~~~~kvGd~clA~ws-----Dg~~Y~A~I~~v~~~-~~~~V~f~----Dyn-----~e~v~~~~lrplp~ 61 (74)
T 2equ_A 7 GFDFKAGEEVLARWT-----DCRYYPAKIEAINKE-GTFTVQFY----DGV-----IRCLKRMHIKAMPE 61 (74)
T ss_dssp CCCCCTTCEEEEECS-----SSSEEEEEEEEESTT-SSEEEEET----TSC-----EEEECGGGEECCCG
T ss_pred CCCCCCCCEEEEECC-----CCCEEEEEEEEECCC-CEEEEEEe----cCC-----eEEecHHHCeeCCh
Confidence 345789999999975 478999999999865 67999765 222 35789999999996
No 35
>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*
Probab=92.46 E-value=0.64 Score=31.61 Aligned_cols=53 Identities=13% Similarity=0.058 Sum_probs=39.9
Q ss_pred cCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeec
Q 024272 130 SLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPF 194 (270)
Q Consensus 130 ~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPL 194 (270)
.++|+.++|+-.. ++.|-=|+|.+++.+++.|+|.=+|= ++ .-.++.+.|-||
T Consensus 2 wk~G~~c~A~~s~----Dg~wYrA~I~~i~~~~~~~~V~fvDY---Gn-----~e~v~~~~lrpi 54 (54)
T 3s6w_A 2 WKPGDECFALYWE----DNKFYRAEVEALHSSGMTAVVKFIDY---GN-----YEEVLLSNIKPI 54 (54)
T ss_dssp CCTTCEEEEEETT----TTEEEEEEEEEC--CCSEEEEEETTT---CC-----EEEEEGGGEECC
T ss_pred CCCCCEEEEEECC----CCCEEEEEEEEEeCCCCEEEEEEEcc---CC-----eEEEeHHHEEEC
Confidence 4789999999853 57899999999987778899998742 22 356778887775
No 36
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=92.36 E-value=0.05 Score=40.51 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=34.3
Q ss_pred CCCCCCCCeEEEeCCCC--CccccEEEecCCCCCCCCCeEEEecCC
Q 024272 202 IPEFPPGRHVLAVYPGT--TALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~T--T~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
...|..|++|++.++++ ..+|+|.|...-.......|.|.|.|=
T Consensus 3 ~~~~~vGekV~~~~~d~k~~~~y~AkIl~i~~~~~~~~Y~VHY~gw 48 (76)
T 2lcc_A 3 MEPCLTGTKVKVKYGRGKTQKIYEASIKSTEIDDGEVLYLVHYYGW 48 (76)
T ss_dssp CCCSSTTCEEEEEEEETTEEEEEEEEEEEEEEETTEEEEEEEETTS
T ss_pred ccccCCCCEEEEEeCCCCCCCEEEEEEEEEEccCCceEEEEEeCCc
Confidence 46799999999999964 689999999874222234599999874
No 37
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=91.58 E-value=0.84 Score=34.75 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=45.4
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 197 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~ 197 (270)
...++|+.|+|+-.. ++.|.=|+|.+++.+.+.|.|.=+|= ++ .-.++.+.|.|||..
T Consensus 9 ~~~kvGd~C~A~ys~----Dg~wYrA~I~~i~~~~~~~~V~fiDY---GN-----~E~V~~~~Lrp~~~~ 66 (88)
T 1g5v_A 9 QQWKVGDKCSAIWSE----DGCIYPATIASIDFKRETCVVVYTGY---GN-----REEQNLSDLLSPICE 66 (88)
T ss_dssp CCCCSSCEEEEECTT----TCCEEEEEEEEEETTTTEEEEEETTT---CC-----EEEEEGGGCBCCC--
T ss_pred CCCCCCCEEEEEECC----CCCEEEEEEEEecCCCCEEEEEEecC---CC-----EEEEcHHHcccCChh
Confidence 457899999999853 57999999999988778899988742 22 357899999999853
No 38
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=90.34 E-value=1.2 Score=35.78 Aligned_cols=111 Identities=19% Similarity=0.251 Sum_probs=73.8
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCCCCCCCCCCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPG 208 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~~~~~~f~kg 208 (270)
.+..|+.|-||.+ ++.+..|+|++... ..|...+-+ |+ .-...|....|+--.- .....-+.|
T Consensus 5 ~v~vGq~V~akh~-----ngryy~~~V~~~~~--~~~y~V~F~---Dg----S~s~dl~peDIvs~dc---~~~GpP~~G 67 (118)
T 2qqr_A 5 SITAGQKVISKHK-----NGRFYQCEVVRLTT--ETFYEVNFD---DG----SFSDNLYPEDIVSQDC---LQFGPPAEG 67 (118)
T ss_dssp CCCTTCEEEEECT-----TSSEEEEEEEEEEE--EEEEEEEET---TS----CEEEEECGGGBCSSCH---HHHCCCCTT
T ss_pred eeccCCEEEEECC-----CCCEEeEEEEEEee--EEEEEEEcC---CC----CccCCCCHhhcccccc---cccCCCCCC
Confidence 4678999999876 36677999999754 334444553 22 2345555555554321 111235789
Q ss_pred CeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCC
Q 024272 209 RHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPE 266 (270)
Q Consensus 209 ~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~ 266 (270)
+.|.=+|++=. .|.|+..+.- ..-.|.|.|||.. ++.++..-|-...|
T Consensus 68 ~~V~V~W~DG~-~y~a~f~g~~---~~~~Y~V~feDgs------~~~~kR~~iyt~~E 115 (118)
T 2qqr_A 68 EVVQVRWTDGQ-VYGAKFVASH---PIQMYQVEFEDGS------QLVVKRDDVYTLDE 115 (118)
T ss_dssp CEEEEECTTSC-EEEEEEEEEE---EEEEEEEEETTSC------EEEECGGGEEETTS
T ss_pred CEEEEEcCCCC-EeeeEEecee---EEEEEEEEECCCC------EEEEcHHHeecccc
Confidence 99999999976 8999988763 2346999999974 35666666655544
No 39
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=90.26 E-value=0.32 Score=40.43 Aligned_cols=40 Identities=18% Similarity=0.317 Sum_probs=34.2
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
...+|+.|+|.|++--.+|||.|.+... .+.+.|.|-|-.
T Consensus 47 ~~~~G~~c~A~~~~d~~wyRa~I~~~~~---~~~~~V~fvDyG 86 (169)
T 3ntk_A 47 DLKEGALCVAQFPEDEVFYRAQIRKVLD---DGKCEVHFIDFG 86 (169)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECS---TTCEEEEETTTT
T ss_pred CCCCCCEEEEEECCCCcEEEEEEEEECC---CCEEEEEEEecC
Confidence 5789999999999989999999999853 236999998863
No 40
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=89.56 E-value=2.1 Score=35.98 Aligned_cols=92 Identities=20% Similarity=0.225 Sum_probs=62.4
Q ss_pred cCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCCCCCCCCCCCC
Q 024272 130 SLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPGR 209 (270)
Q Consensus 130 ~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~~~~~~f~kg~ 209 (270)
...|..|-|+-.. +.-|.-++|.++- .+++|+|.=. |+. .-++..++|+-. ..||+|.
T Consensus 9 ~~iG~rVfArWsd----~~yyYpG~V~~~~-~~~~Y~V~Fd----DG~-----~k~v~~~divv~--------~~LP~~~ 66 (156)
T 1ssf_A 9 SFVGLRVVAKWSS----NGYFYSGKITRDV-GAGKYKLLFD----DGY-----ECDVLGKDILLC--------DPIPLDT 66 (156)
T ss_dssp CSTTCEEEECSSC----SSEEEEEEEEECC-TTTEEEEECT----TSC-----EEEEETTTEEEE--------CCSCSSE
T ss_pred chhccEEEEEcCC----CCcccccEEEEec-cCCEEEEEEc----CCC-----eeEeeccceEEE--------eccCCCc
Confidence 4689999998863 4678899999974 4688999542 322 346666666631 1345679
Q ss_pred eEEEeCCCCCccccEEEecCCCC-CCCCCeEEEecCC
Q 024272 210 HVLAVYPGTTALYKATVVSTPRK-RKTDDYLLEFDDD 245 (270)
Q Consensus 210 ~VLAlYP~TT~FY~A~V~~~p~~-~~~~~Y~L~FeDd 245 (270)
.|+|+ ..-+||-+.|+..... .....|.|++++.
T Consensus 67 ~V~A~--~~ddy~s~giI~~h~~~~~e~~Y~Ve~~G~ 101 (156)
T 1ssf_A 67 EVTAL--SEDEYFSAGVVKGHRKESGELYYSIEKEGQ 101 (156)
T ss_dssp EEEES--SCTTTCEEEEEEEEEEETTEEEEEEEETTE
T ss_pred EEEEc--cCCccccccEEEeecCCCCcEEEEEEeCCc
Confidence 99999 6678998888875321 1124499999554
No 41
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=89.25 E-value=0.31 Score=41.19 Aligned_cols=87 Identities=18% Similarity=0.110 Sum_probs=52.1
Q ss_pred CEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCCCCCCCCCCCCeEEEeCCCCCccccEEEec
Q 024272 149 EWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPGRHVLAVYPGTTALYKATVVS 228 (270)
Q Consensus 149 ~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~~~~~~f~kg~~VLAlYP~TT~FY~A~V~~ 228 (270)
+++-+.|+.+.. .+.|-|+.++....=+.- .....-..+.--|+|. .-...+|+.|+|.|.+--+||||.|.+
T Consensus 3 ~~~~V~Vt~v~~-p~~f~vq~~~~~~~l~~l-~~~l~~~~~~~~~~~~-----~~~~~~g~~c~a~~~~d~~wyRa~V~~ 75 (218)
T 2wac_A 3 NYENVIVTEITE-TLTFFAQSVESGSKLESL-MSKLHADFQSNPPIAG-----SYTPKRGDLVAAQFTLDNQWYRAKVER 75 (218)
T ss_dssp CCEEEEEEEECT-TSEEEEEEGGGHHHHHHH-HHHHHHHHHHSCCCTT-----SCCCCTTCEEEEECTTTCCEEEEEEEE
T ss_pred ceEEEEEEEEcC-CCEEEEEECCCHHHHHHH-HHHHHHHHhhCCCCCC-----CccCCcCCEEEEEECCCCeEEEEEEEE
Confidence 456677777764 467889887421000000 0000000011112321 113679999999999888999999999
Q ss_pred CCCCCCCCCeEEEecCCC
Q 024272 229 TPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 229 ~p~~~~~~~Y~L~FeDd~ 246 (270)
.. + +.+.|.|-|..
T Consensus 76 v~-~---~~~~V~~vDyG 89 (218)
T 2wac_A 76 VQ-G---SNATVLYIDYG 89 (218)
T ss_dssp EE-T---TEEEEEETTTC
T ss_pred ec-C---CeEEEEEEecC
Confidence 85 2 67999998863
No 42
>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A
Probab=88.53 E-value=4.3 Score=32.85 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=58.6
Q ss_pred CCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCcee---ecCCCCCCCCCCCCC
Q 024272 131 LKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFII---PFPKRNDSSIPEFPP 207 (270)
Q Consensus 131 ~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~II---PLP~~~~~~~~~f~k 207 (270)
..|-.|-|+-.. +..|.-++|++.- .++||.|.=- |+. .-++..+.|| ||| .
T Consensus 6 ~~G~rV~AkWsd----n~~yYpG~V~~~~-~~~ky~V~Fd----Dg~-----~~~v~~k~iiv~d~ip-----------~ 60 (123)
T 2g3r_A 6 FVGLRVVAKWSS----NGYFYSGKITRDV-GAGKYKLLFD----DGY-----ECDVLGKDILLCDPIP-----------L 60 (123)
T ss_dssp CTTCEEEEECTT----TCCEEEEEEEEEE-ETTEEEEEET----TSC-----EEEEEGGGEECCSSCC-----------T
T ss_pred ccceEEEEEecc----CCcCcccEEEEec-cCCeEEEEEc----CCC-----eeEeecceEEEecccC-----------C
Confidence 468888888763 4589999999964 4589999542 322 3578899999 776 5
Q ss_pred CCeEEEeCCCCCcccc-EEEecCCCCCCCCCeEEEecC
Q 024272 208 GRHVLAVYPGTTALYK-ATVVSTPRKRKTDDYLLEFDD 244 (270)
Q Consensus 208 g~~VLAlYP~TT~FY~-A~V~~~p~~~~~~~Y~L~FeD 244 (270)
|+-|+|+= +-+||- ++|..-.+....-.|.|+-|+
T Consensus 61 g~~V~A~t--eddy~~~GiI~~~k~~~~e~~Y~Ve~dG 96 (123)
T 2g3r_A 61 DTEVTALS--EDEYFSAGVVKGHRKESGELYYSIEKEG 96 (123)
T ss_dssp TCEEEEEC--TTSCEEEEEEEEEEEETTEEEEEEEETT
T ss_pred CcEEEEee--cCccccceEEEEEecCCCeEEEEEEeCC
Confidence 89999998 446665 555544322222338888533
No 43
>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0
Probab=88.50 E-value=0.38 Score=37.80 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=43.0
Q ss_pred CCCCCCCCCeEEEeCCC---CCccccEEEecCCCC-----CCCCCeEEEecCCCCCCCCCcccccCceEeeCC
Q 024272 201 SIPEFPPGRHVLAVYPG---TTALYKATVVSTPRK-----RKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLP 265 (270)
Q Consensus 201 ~~~~f~kg~~VLAlYP~---TT~FY~A~V~~~p~~-----~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p 265 (270)
.-|.|.+|.+||+.+|+ --..|.|.|...-.. .....|.|.|.|=.. +=...||+-.|+.+-
T Consensus 16 ~~~~f~~GEkVLc~h~d~~kg~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~---rwDEWV~edRilk~~ 85 (101)
T 3m9q_A 16 ETPLFHKGEIVLCYEPDKSKARVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRP---SYDRAVRATVLLKDT 85 (101)
T ss_dssp CCCCCCTTCEEEEECCCTTSCCCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCG---GGCEEECGGGEEECC
T ss_pred CCCcccCCCEEEEEecCCCCCCcceEeEEEEEEecCCccccCceEEEEEeCCCCc---CceeecCHHHcccCC
Confidence 44679999999999987 568999999987321 112469999987320 011367777776653
No 44
>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1
Probab=88.09 E-value=2.3 Score=31.69 Aligned_cols=56 Identities=11% Similarity=0.151 Sum_probs=44.5
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
...++|+.|||+-.. ++.|-=|+|+++.+ ++.++|.=+|= | ..-.++.++|-|||.
T Consensus 26 ~~~~~G~~c~a~~~~----d~~wyRA~I~~~~~-~~~~~V~fvDy---G-----n~e~v~~~~lr~l~~ 81 (94)
T 3fdr_A 26 LTVHVGDIVAAPLPT----NGSWYRARVLGTLE-NGNLDLYFVDF---G-----DNGDCPLKDLRALRS 81 (94)
T ss_dssp CCCCTTCEEEEEETT----TTEEEEEEEEEECT-TSCEEEEETTT---C-----CEEEECGGGCEECCG
T ss_pred CCCCCCCEEEEEECC----CCeEEEEEEEEECC-CCeEEEEEEcC---C-----CeEEEEHHHhhhcCH
Confidence 456899999998752 57999999999974 46799998852 2 246889999999995
No 45
>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=87.78 E-value=0.57 Score=36.32 Aligned_cols=44 Identities=7% Similarity=0.083 Sum_probs=34.2
Q ss_pred CCCCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 200 SSIPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 200 ~~~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
.+.+.|..|++|++.. .-.+|.|+|...-.......|-|.|.|=
T Consensus 21 ~~~~~~~vG~kv~v~~--~~~~yeAeIl~ir~~~g~~~YYVHY~g~ 64 (94)
T 2rnz_A 21 MSVDDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNY 64 (94)
T ss_dssp SCGGGCCTTEEEEEEC--SSCEEEEEEEEEECSSSSCEEEEECTTS
T ss_pred cccccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCc
Confidence 4445699999999996 6789999999874333345699999884
No 46
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=87.70 E-value=0.66 Score=33.38 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=32.4
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
..|.+|.+|-|+-+.-.. |.|+|...- .....+.|.|+|-
T Consensus 11 ~~F~vGmkLEa~d~~~p~-~~AtV~~v~--~~~~~~~VhfdGw 50 (69)
T 3sd4_A 11 ISFEVGAQLEARDRLKNW-YPAHIEDID--YEEGKVLIHFKRW 50 (69)
T ss_dssp CCCSTTCEEEEECTTSCE-EEEEEEEEE--TTTTEEEEEETTS
T ss_pred CCcCCCCEEEEEECCCCc-cccEEEEEe--ccCCEEEEEeCCC
Confidence 359999999999998777 999999862 1235699999874
No 47
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=87.29 E-value=6.4 Score=31.88 Aligned_cols=92 Identities=16% Similarity=0.174 Sum_probs=62.0
Q ss_pred CCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCCCCCCCCCCCCeEE
Q 024272 133 GEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPGRHVL 212 (270)
Q Consensus 133 G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~~~~~~f~kg~~VL 212 (270)
|..|-.+- .++.|.-|.|..+.. +.+-|.=. + +- +..-+++.++|-|-|.. ...++|..|+.|=
T Consensus 5 ~~~VEV~~-----~~G~~y~a~V~~v~~--d~~~V~f~----n-~w--~~~~~vp~~~vRlpP~~--~~~~~f~~gd~VE 68 (128)
T 3h8z_A 5 GLPVEVRG-----SNGAFYKGFVKDVHE--DSVTIFFE----N-NW--QSERQIPFGDVRLPPPA--DYNKEITEGDEVE 68 (128)
T ss_dssp TCEEEEEC-----TTSCEEEEEEEEECS--SEEEEEET----T-CT--TCCEEEEGGGEECCCCC------CCCTTCEEE
T ss_pred ccEEEEec-----CCCCEEEEEEEEEeC--CcEEEEEc----c-cc--CcceEechhhEEcCCCc--ccccCCCCCCEEE
Confidence 44555543 257999999988743 34555332 1 11 22457888888887764 3447899999999
Q ss_pred EeCCCC---C-ccccEEEecCCCCCCCCCeEEEecC
Q 024272 213 AVYPGT---T-ALYKATVVSTPRKRKTDDYLLEFDD 244 (270)
Q Consensus 213 AlYP~T---T-~FY~A~V~~~p~~~~~~~Y~L~FeD 244 (270)
++.... + +.|+|+|...- .+.|.|.|.+
T Consensus 69 V~~~~~d~ep~gWw~a~I~~~k----g~f~~V~y~~ 100 (128)
T 3h8z_A 69 VYSRANEQEPCGWWLARVRMMK----GDFYVIEYAA 100 (128)
T ss_dssp EEECC---CCCEEEEEEEEEEE----TTEEEEEETT
T ss_pred EEecCCCCCcCccEEEEEEEee----CCEEEEEEcC
Confidence 999753 3 59999998873 4789999877
No 48
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=87.19 E-value=0.52 Score=40.09 Aligned_cols=40 Identities=23% Similarity=0.291 Sum_probs=33.3
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
....|+.++|.|++--.+|||.|..... .+.+.|.|-|-.
T Consensus 65 ~~~~G~~c~a~~~~d~~wyRa~V~~~~~---~~~~~V~~vDyG 104 (201)
T 4b9w_A 65 KAEIGRPCCAFFSGDGNWYRALVKEILP---SGNVKVHFVDYG 104 (201)
T ss_dssp CCCTTCEEEEEETTTTEEEEEEEEEECT---TSCEEEEETTTC
T ss_pred CCCCCCEEEEEECCCCeEEEEEEEEECC---CCeEEEEEEccC
Confidence 3568999999999999999999998642 356999998863
No 49
>3oa6_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3ob9_A*
Probab=86.42 E-value=0.69 Score=36.86 Aligned_cols=59 Identities=25% Similarity=0.353 Sum_probs=39.7
Q ss_pred CCCCCCCeEEEeCCCCC---ccccEEEecCCCCC-C----CCCeEEEecCCCCCCCCCcccccCceEeeC
Q 024272 203 PEFPPGRHVLAVYPGTT---ALYKATVVSTPRKR-K----TDDYLLEFDDDEEDGALPQRTVPFHNVVPL 264 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT---~FY~A~V~~~p~~~-~----~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~ 264 (270)
+.|..|.+||+..|+++ -.|-|.|...-... . ...|.|.|.|=.. +=...||+-.|+.+
T Consensus 18 ~~F~~gEkVLc~h~d~~kg~llYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~---~WDEWV~~drllk~ 84 (110)
T 3oa6_A 18 FKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNR---SWDRWAAEDHVLRD 84 (110)
T ss_dssp CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCG---GGCEEEEGGGEEEC
T ss_pred cccCCCCEEEEEecCCCCCcccEEEEEEEEEeccCCcCCcccEEEEEECCcCc---chhhccChhhhhcC
Confidence 56999999999999965 79999998752111 1 1249999987310 00136777666654
No 50
>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}
Probab=86.18 E-value=0.14 Score=38.82 Aligned_cols=62 Identities=19% Similarity=0.257 Sum_probs=41.0
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeCCCCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLPEGHR 269 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p~~~~ 269 (270)
+.|..|++||+.+.+ .+|.|.|...-.......|.|.|.|=.- .=.-.||.--|+..-+.++
T Consensus 11 ~~~~~Gekv~~~~~~--~~y~AkIl~i~~~~~~~~YyVHY~GwNk---R~DEWV~~~Rl~k~t~en~ 72 (85)
T 2lrq_A 11 TLFVDGERVLCFHGP--LIYEAKVLKTKPDATPVEYYIHYAGWSK---NWDEWVPENRVLKYNDDNV 72 (85)
Confidence 569999999999976 5799999987432234569999987320 0012566655555444433
No 51
>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A
Probab=86.06 E-value=0.47 Score=37.26 Aligned_cols=58 Identities=26% Similarity=0.358 Sum_probs=39.1
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCCCCCCCCcccccCceEeeC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPL 264 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~ 264 (270)
-+.|..|++||+.+ ...+|.|.|...-.......|.|.|.|=.. .=.-.||.-.|+..
T Consensus 20 ~~~f~vGekVl~~~--~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNk---R~DEWV~~~Rl~k~ 77 (102)
T 2f5k_A 20 KPKFQEGERVLCFH--GPLLYEAKCVKVAIKDKQVKYFIHYSGWNK---NWDEWVPESRVLKY 77 (102)
T ss_dssp SCSCCTTCEEEEES--SSSEEEEEEEEEEEETTEEEEEEEETTSCG---GGCEEEEGGGEEES
T ss_pred CcccCCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCcCC---CceeeccHhhcccC
Confidence 46799999999998 468999999987422223469999987420 00125665555543
No 52
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=85.81 E-value=0.51 Score=40.91 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=32.9
Q ss_pred CCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 205 FPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 205 f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
..+|+.++|.|++--+||||.|..... .+.+.|.|-|-.
T Consensus 66 ~~~G~~c~a~~~~d~~WyRa~V~~~~~---~~~~~V~~vDyG 104 (226)
T 4b9x_A 66 AEIGRPCCAFFSGDGNWYRALVKEILP---SGNVKVHFVDYG 104 (226)
T ss_dssp CCTTCEEEEEETTTTEEEEEEEEEECS---SSEEEEECTTTC
T ss_pred CCCCCEEEEEECCCCeEEEEEEEEECC---CCeEEEEEEecC
Confidence 568999999999999999999998642 356999998863
No 53
>3m9p_A MALE-specific lethal 3 homolog; chromodomain, MSL3, histone H4 tail, DNA backbone recognitio methyllysine recognition, H4K20ME1; HET: DNA MLZ; 2.35A {Homo sapiens} PDB: 3oa6_A* 3ob9_A*
Probab=85.51 E-value=0.6 Score=37.20 Aligned_cols=62 Identities=23% Similarity=0.302 Sum_probs=41.9
Q ss_pred CCCCCCCCCeEEEeCCC---CCccccEEEecCCCCCC-----CCCeEEEecCCCCCCCCCcccccCceEeeCC
Q 024272 201 SIPEFPPGRHVLAVYPG---TTALYKATVVSTPRKRK-----TDDYLLEFDDDEEDGALPQRTVPFHNVVPLP 265 (270)
Q Consensus 201 ~~~~f~kg~~VLAlYP~---TT~FY~A~V~~~p~~~~-----~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p 265 (270)
..|.|..|++||+.+++ +-.+|.|.|+..-.... ...|.|.|.|=.. .=...||.-.|+..-
T Consensus 16 ~~~~F~~GEkVLc~hgd~~k~~~lYeAKIl~v~~~~~~~g~~~~~Y~VHY~GWn~---~wDEWV~e~rllk~~ 85 (110)
T 3m9p_A 16 MKFKFHSGEKVLCFEPDPTKARVLYDAKIVDVIVGKDEKGRKIPEYLIHFNGWNR---SWDRWAAEDHVLRDT 85 (110)
T ss_dssp --CCSCTTCEEEEECSCTTSCCCEEEEEEEEEEEEECTTCCEEEEEEEEETTSCG---GGCEEEEGGGEEECC
T ss_pred CCCcccCCCEEEEEcCCCCCCCCceeeEEEEEEeccCcccccceEEEEEECCCCc---chhhccCHhhhhcCC
Confidence 34679999999999987 35799999998732111 1359999987320 012378877777653
No 54
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=85.04 E-value=1.2 Score=34.32 Aligned_cols=44 Identities=7% Similarity=0.101 Sum_probs=34.2
Q ss_pred CCCCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 200 SSIPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 200 ~~~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
.+...|..|++|++.. .-.+|.|+|...-.......|-|.|.|=
T Consensus 19 ~~~~~~~vG~kv~v~~--~~~~y~AkIl~ir~~~~~~~YyVHY~g~ 62 (92)
T 2ro0_A 19 NSVDDIIIKCQCWVQK--NDEERLAEILSINTRKAPPKFYVHYVNY 62 (92)
T ss_dssp SCTTSCCTTCEEEEEE--TTEEEEEEEEEEECSSSSCEEEEEETTS
T ss_pred cccccccCCCEEEEEE--CCEEEEEEEEEEEEcCCCcEEEEEeCCc
Confidence 3445699999999996 6789999999874333345699999884
No 55
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=84.40 E-value=0.32 Score=39.51 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=34.3
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
.+....|+.|.|-.++ .-||+|+|.+.- ....|.|.|+|.
T Consensus 4 ~~~v~vGq~V~ak~~n-gryy~~~V~~~~---~~~~y~V~F~Dg 43 (123)
T 2xdp_A 4 EKVISVGQTVITKHRN-TRYYSCRVMAVT---SQTFYEVMFDDG 43 (123)
T ss_dssp CCCCCTTCCCCCCCCC-CCCCCCEEEEEE---EEEEEEEEETTS
T ss_pred ccccccCCEEEEECCC-CcEEeEEEEEEe---eEEEEEEEcCCC
Confidence 4678999999999986 899999999984 246799999875
No 56
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=84.11 E-value=0.75 Score=37.06 Aligned_cols=40 Identities=23% Similarity=0.426 Sum_probs=33.5
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
.+....|++|.|-.+ ..-||+|+|.+.- ....|.|.|+|-
T Consensus 3 ~~~v~vGq~V~akh~-ngryy~~~V~~~~---~~~~y~V~F~Dg 42 (118)
T 2qqr_A 3 MQSITAGQKVISKHK-NGRFYQCEVVRLT---TETFYEVNFDDG 42 (118)
T ss_dssp SSCCCTTCEEEEECT-TSSEEEEEEEEEE---EEEEEEEEETTS
T ss_pred cceeccCCEEEEECC-CCCEEeEEEEEEe---eEEEEEEEcCCC
Confidence 467899999999988 6789999999983 236799999875
No 57
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=84.09 E-value=5.5 Score=30.25 Aligned_cols=55 Identities=20% Similarity=0.205 Sum_probs=43.7
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 197 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~ 197 (270)
..+++|++|-|+= . +..|.=|+|++++++ ..|.|.=- | + ..-+|....|.|||+.
T Consensus 20 ~~f~vGd~VlArW-~----D~~yYPAkI~sV~~~-~~YtV~F~----D--G---~~etvk~~~IKp~~~~ 74 (85)
T 3qii_A 20 SEFQINEQVLACW-S----DCRFYPAKVTAVNKD-GTYTVKFY----D--G---VVQTVKHIHVKAFSKD 74 (85)
T ss_dssp -CCCTTCEEEEEC-T----TSCEEEEEEEEECTT-SEEEEEET----T--S---CEEEEEGGGEEECC--
T ss_pred cccccCCEEEEEe-C----CCCEeeEEEEEECCC-CeEEEEEe----C--C---CeEEecHHHcccCChh
Confidence 4578999999998 2 579999999999886 67999764 2 2 3679999999999963
No 58
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=83.72 E-value=7 Score=27.67 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=41.5
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeec
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPF 194 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPL 194 (270)
.+..|+.|-|+-. ++.+.|+.|+.++....+|-|.=. |+ ..+.+.++.|-++
T Consensus 3 ~f~~GedVLarws-----DG~fYlGtI~~V~~~~~~clV~F~----D~-----s~~W~~~kdi~~~ 54 (58)
T 4hcz_A 3 RLWEGQDVLARWT-----DGLLYLGTIKKVDSAREVCLVQFE----DD-----SQFLVLWKDISPA 54 (58)
T ss_dssp SCCTTCEEEEECT-----TSCEEEEEEEEEETTTTEEEEEET----TS-----CEEEEEGGGEEEC
T ss_pred ccccCCEEEEEec-----CCCEEeEEEEEEecCCCEEEEEEc----CC-----CeEEEEhHHcccc
Confidence 4678999999875 589999999999998889999764 21 2567777777765
No 59
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=82.19 E-value=8.2 Score=27.94 Aligned_cols=54 Identities=20% Similarity=0.208 Sum_probs=43.0
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 197 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~ 197 (270)
.+++|+.|-|+= . +..|.=|+|.+++++ ..|.|.=. | + ..-++..+.|.|+|+.
T Consensus 6 ~~~vGd~vmArW-~----D~~yYpA~I~si~~~-~~Y~V~F~----d--G---~~etvk~~~ikp~~~~ 59 (67)
T 3p8d_A 6 EFQINEQVLACW-S----DCRFYPAKVTAVNKD-GTYTVKFY----D--G---VVQTVKHIHVKAFSKD 59 (67)
T ss_dssp CCCTTCEEEEEC-T----TSCEEEEEEEEECTT-SEEEEEET----T--S---CEEEEEGGGEEECC--
T ss_pred ccccCCEEEEEc-C----CCCEeeEEEEEECCC-CeEEEEEe----C--C---ceEEEeHHHcccCCcc
Confidence 468999999997 2 579999999999887 67999764 2 2 3569999999999973
No 60
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=81.47 E-value=0.99 Score=36.77 Aligned_cols=42 Identities=12% Similarity=0.230 Sum_probs=31.9
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCC--CCCCCCeEEEecC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPR--KRKTDDYLLEFDD 244 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~--~~~~~~Y~L~FeD 244 (270)
.+.|..|++||+.++ .-.+|.|.|...-. ......|.|.|.|
T Consensus 10 ~~~~~vGe~v~~~~~-d~~~y~AkIl~i~~~~~~~~~~YyVHY~g 53 (133)
T 1wgs_A 10 EVTVEIGETYLCRRP-DSTWHSAEVIQSRVNDQEGREEFYVHYVG 53 (133)
T ss_dssp CCCCCTTSEEEEEET-TTEEEEEEEEEEEEETTTTEEEEEEECTT
T ss_pred ccccCCCCEEEEEeC-CCCEEEEEEEEEEeccCCCceEEEEeccC
Confidence 356999999999997 45899999998521 1123469999986
No 61
>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=80.60 E-value=3.8 Score=31.43 Aligned_cols=55 Identities=11% Similarity=0.166 Sum_probs=43.7
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
...+|+.|+|+... ++.|.=|+|+++.++ +.|+|.=+|= + ..-.++.++|-+||.
T Consensus 32 ~~~~G~~c~a~~~~----d~~wyRA~V~~~~~~-~~~~V~fvDy---G-----n~e~v~~~~Lr~l~~ 86 (110)
T 2diq_A 32 TVHVGDIVAAPLPT----NGSWYRARVLGTLEN-GNLDLYFVDF---G-----DNGDCPLKDLRALRS 86 (110)
T ss_dssp CCCTTCEEEECCTT----TCSCEEEEECCCCSS-SCEEEEETTT---C-----CEEEECGGGCEECCH
T ss_pred CCCCCCEEEEEECC----CCeEEEEEEEEECCC-CeEEEEEEeC---C-----CeEEEehHHhhcCcH
Confidence 46899999998742 578999999998764 6799998852 2 256889999999985
No 62
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=79.31 E-value=0.87 Score=40.18 Aligned_cols=43 Identities=16% Similarity=0.235 Sum_probs=33.3
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
+.++..|..|||.+ -|-++|+|+|..--+....-.|.|+|++.
T Consensus 6 ~~~l~Vg~~vlg~k-~~~~W~rg~v~~I~~~~~g~~YkVkF~~~ 48 (213)
T 3dlm_A 6 QGDLIVSMRILGKK-RTKTWHKGTLIAIQTVGPGKKYKVKFDNK 48 (213)
T ss_dssp ETTEETTCEEEEEC-TTSBEEEEEEEEEEEETTEEEEEEEESSS
T ss_pred cCcEEEccEEEEEe-cCCcEEEEEEEEEEECCCCeEEEEEEcCC
Confidence 34678999999999 77999999999943222234599999964
No 63
>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}
Probab=80.08 E-value=0.41 Score=36.18 Aligned_cols=54 Identities=17% Similarity=0.188 Sum_probs=42.1
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 197 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~ 197 (270)
.+++||.|.|+-. ++.|.=|+|.+++.+ +.|+|.=.| ++ .-+++.++|.|||+.
T Consensus 6 ~~kvGd~clAkws-----Dg~wY~A~I~~v~~~-~~y~V~F~D----Gn-----~E~V~~s~LrPl~~~ 59 (81)
T 2ldm_A 6 EFQINEQVLASWS-----DSRFYPAKVTAVNKD-GTYTVKFYD----GV-----VQTVKHIHVKAFSKD 59 (81)
Confidence 4688999999875 468999999999754 579987653 22 347888999999964
No 64
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.41 E-value=14 Score=26.94 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=44.1
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
.+..|+.|-|+-+ ++.+.|+.|+.++....+|-|.=.| .-.+-+.++.|.++-.
T Consensus 9 ~f~eGqdVLarWs-----DGlfYlGtV~kV~~~~~~ClV~FeD---------~s~~wv~~kdi~~~~~ 62 (68)
T 2e5p_A 9 RLWEGQDVLARWT-----DGLLYLGTIKKVDSAREVCLVQFED---------DSQFLVLWKDISPAAL 62 (68)
T ss_dssp CCCTTCEEEEECT-----TSSEEEEEEEEEETTTTEEEEEETT---------TEEEEEETTTEECCCS
T ss_pred ccccCCEEEEEec-----CCcEEEeEEEEEecCCcEEEEEEcc---------CCeeeeeeeccccccc
Confidence 4789999999875 5899999999999988999997652 1368888999988753
No 65
>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}
Probab=77.94 E-value=9.3 Score=31.90 Aligned_cols=54 Identities=24% Similarity=0.365 Sum_probs=42.8
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
...+|+.|+|+... ++.|.=|+|+++.. +.+.|.=+|- | ..-.++.++|-|||.
T Consensus 51 ~~~~g~~c~a~~~~----d~~wyRa~V~~v~~--~~~~V~~vDy---G-----~~~~v~~~~l~~l~~ 104 (218)
T 2wac_A 51 TPKRGDLVAAQFTL----DNQWYRAKVERVQG--SNATVLYIDY---G-----NKETLPTNRLAALPP 104 (218)
T ss_dssp CCCTTCEEEEECTT----TCCEEEEEEEEEET--TEEEEEETTT---C-----CEEEEEGGGEEECCG
T ss_pred cCCcCCEEEEEECC----CCeEEEEEEEEecC--CeEEEEEEec---C-----CeEEEchHHcccCCh
Confidence 35789999998753 47899999999976 7799988742 2 245788999999985
No 66
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=76.97 E-value=12 Score=28.06 Aligned_cols=40 Identities=20% Similarity=0.138 Sum_probs=34.2
Q ss_pred cccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecC
Q 024272 126 DTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDE 170 (270)
Q Consensus 126 ~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~ 170 (270)
+...+..|+.|-++-. ++.+.|+.|+.++....+|-|.=.
T Consensus 23 p~~~f~eGeDVLarws-----DGlfYLGTI~kV~~~~e~ClV~F~ 62 (79)
T 2m0o_A 23 PRPRLWEGQDVLARWT-----DGLLYLGTIKKVDSAREVCLVQFE 62 (79)
T ss_dssp CCCCCCTTCEEEBCCT-----TSCCCEEEEEEEETTTTEEEEEET
T ss_pred CcceeccCCEEEEEec-----CCCEEeEEEEEeccCCCEEEEEEc
Confidence 3467899999999875 689999999999998899999754
No 67
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=76.27 E-value=2.1 Score=37.11 Aligned_cols=89 Identities=16% Similarity=0.110 Sum_probs=34.4
Q ss_pred CCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCCCCCCCCCCCCeEEEeCCCCCccccEEE
Q 024272 147 KDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPGRHVLAVYPGTTALYKATV 226 (270)
Q Consensus 147 ~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~~~~~~f~kg~~VLAlYP~TT~FY~A~V 226 (270)
.+.++-+.|+.+.. .+.|-|+..+....=+.- .....-..+..-++|. .....+|+.|+|.|. -.+||||.|
T Consensus 15 ~~~~~~V~Vt~v~~-p~~f~vq~~~~~~~l~~l-~~~l~~~~~~~~~~~~-----~~~~~~G~~c~a~~~-d~~wyRa~V 86 (246)
T 2hqx_A 15 SASYKPVFVTEITD-DLHFYVQDVETGTQFQKL-MENMRNDIASHPPVEG-----SYAPRRGEFCIAKFV-DGEWYRARV 86 (246)
T ss_dssp ---------------------------CHHHHH-HHHHHHHHHHSCCCTT-----TCCCCTTCEEEEECT-TSCEEEEEE
T ss_pred CCCEEEEEEEEECC-CCEEEEEECCcHHHHHHH-HHHHHHHHhhCCCCCC-----CCCCCCCCEEEEEcC-CCCEEEEEE
Confidence 35788888888764 467888887421000000 0000000011112211 124579999999999 579999999
Q ss_pred ecCCCCCCCCCeEEEecCCC
Q 024272 227 VSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 227 ~~~p~~~~~~~Y~L~FeDd~ 246 (270)
..... .+.+.|.|-|-.
T Consensus 87 ~~~~~---~~~~~V~~vDyG 103 (246)
T 2hqx_A 87 EKVES---PAKIHVFYIDYG 103 (246)
T ss_dssp EEEEE---TTEEEEEETTTC
T ss_pred EEEcC---CCeEEEEEEeCC
Confidence 98742 257999998863
No 68
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=75.93 E-value=2.9 Score=34.27 Aligned_cols=46 Identities=24% Similarity=0.341 Sum_probs=34.9
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCC---CCCCCeEEEecCCCCCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRK---RKTDDYLLEFDDDEEDGA 250 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~---~~~~~Y~L~FeDd~~~G~ 250 (270)
+|..|++|+|-..+ -.+.||.|..++.. .....|.|.|=|+.+-+.
T Consensus 22 ~f~~GdlVwaK~~g-~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~aw 70 (153)
T 4fu6_A 22 DFKPGDLIFAKMKG-YPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAF 70 (153)
T ss_dssp GCCTTCEEEECCTT-SCCEEEEECCCC---CCCCTTCEEEEETTTCCEEE
T ss_pred CCCCCCEEEEeCCC-CCCCCEEEeEchhhccCCCCCEEEEEecCCCCeEE
Confidence 59999999999865 67999999987632 224679999988754433
No 69
>1uur_A Stata protein, STAT protein; transcription activator, SH2, signal transduction, transducer, transcription factor; HET: PTR; 2.7A {Dictyostelium discoideum} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 1uus_A*
Probab=75.61 E-value=6.7 Score=38.30 Aligned_cols=64 Identities=22% Similarity=0.213 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcCC-cccccCCCcchHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 024272 12 LDKSRELDRLRKEQEDVLLEINKMHKKLHNT-PEVIEKPGDNSLTK---LKSLYIQAKELSENEVHVSNLL 78 (270)
Q Consensus 12 ~~~l~el~~lr~~~e~~l~~I~k~h~k~~~~-~e~~~k~~~~~~~k---L~~lY~~a~~~ae~E~~~~~~~ 78 (270)
+..|-||+.|-.+|++.|.++--..+.+... |.. ......+- |...|++-+...+.|.+.|..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~e~~~l~~~ 78 (473)
T 1uur_A 11 QPILDTIYKLLSEQEQTLVQMIHEQSLLLNRLPPT---LDENSLAPLKSLSQKQITLSGQMNTEMSALDAT 78 (473)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSS---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999987666666543 443 23444444 7778999999999999998876
No 70
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=74.99 E-value=1.9 Score=34.88 Aligned_cols=97 Identities=19% Similarity=0.234 Sum_probs=64.6
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCCCCCCCCCCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRNDSSIPEFPPG 208 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~~~~~~f~kg 208 (270)
.+..|+.|-||.+ ++.+..|+|++... ..-|+| +-+ |+ .-...|....|+--.- .....-+.|
T Consensus 6 ~v~vGq~V~ak~~-----ngryy~~~V~~~~~-~~~y~V-~F~---Dg----S~s~dl~PedIvs~dc---~~~GpP~~G 68 (123)
T 2xdp_A 6 VISVGQTVITKHR-----NTRYYSCRVMAVTS-QTFYEV-MFD---DG----SFSRDTFPEDIVSRDC---LKLGPPAEG 68 (123)
T ss_dssp CCCTTCCCCCCCC-----CCCCCCCEEEEEEE-EEEEEE-EET---TS----CEEEEECGGGBCSSCH---HHHCCCCTT
T ss_pred ccccCCEEEEECC-----CCcEEeEEEEEEee-EEEEEE-EcC---CC----CccCCCCHhHcccccc---cccCCCCCC
Confidence 4678999998865 36677899999864 234555 543 22 2344555555533220 111335789
Q ss_pred CeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 209 RHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 209 ~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
+.|.=+|+|=. .|.|+..+.-. .-.|.|.|||..
T Consensus 69 ~~V~V~W~DG~-~y~a~f~g~~~---~~~YtV~FeDgs 102 (123)
T 2xdp_A 69 EVVQVKWPDGK-LYGAKYFGSNI---AHMYQVEFEDGS 102 (123)
T ss_dssp CEEEEECTTSC-EEEEEEEEEEE---EEEEEEECTTSC
T ss_pred CEEEEEcCCCC-EEeEEEeeeee---EEEEEEEECCCC
Confidence 99999999866 88999888742 346999999974
No 71
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=74.44 E-value=12 Score=31.45 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=43.7
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 197 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~ 197 (270)
..++|+.+||+... ++.|.=|+|+++..+ +.++|.=+|= |+ .-.++.++|.+||..
T Consensus 65 ~~~~G~~c~a~~~~----d~~wyRa~V~~~~~~-~~~~V~~vDy---G~-----~~~v~~~~l~~l~~~ 120 (201)
T 4b9w_A 65 KAEIGRPCCAFFSG----DGNWYRALVKEILPS-GNVKVHFVDY---GN-----VEEVTTDQLQAILPQ 120 (201)
T ss_dssp CCCTTCEEEEEETT----TTEEEEEEEEEECTT-SCEEEEETTT---CC-----EEEECGGGEEECCGG
T ss_pred CCCCCCEEEEEECC----CCeEEEEEEEEECCC-CeEEEEEEcc---CC-----EEEEEHHHhccChHh
Confidence 35789999999763 578999999998653 5799999853 22 457899999999953
No 72
>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=74.22 E-value=22 Score=25.78 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=46.5
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
..+..||.|-||=.. +..+.-|+|++++..+.-|.|.==+ + ..-+|..+.|-|+|.
T Consensus 11 ~~f~vgd~VmaRW~G----d~~yYparItSits~~~~Y~VkfKd------g---T~e~L~~kDIKp~~~ 66 (68)
T 2dig_A 11 RKFADGEVVRGRWPG----SSLYYEVEILSHDSTSQLYTVKYKD------G---TELELKENDIKSGPS 66 (68)
T ss_dssp CSSCSSCEEEEECTT----TCCEEEEEEEEEETTTTEEEEECTT------S---CEEEEETTTEECCCC
T ss_pred eEeecCCEEEEEccC----CccceEEEEEEeccCCceEEEEecC------C---CEEEechhccccCCC
Confidence 457899999999872 4689999999999889999997642 1 357999999999995
No 73
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=72.07 E-value=14 Score=31.72 Aligned_cols=56 Identities=9% Similarity=0.075 Sum_probs=43.8
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR 197 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~ 197 (270)
...+|+.+||+... ++.|.=|+|+++.++ +.++|.=+|= |+ .-.++.++|.+||..
T Consensus 65 ~~~~G~~c~a~~~~----d~~WyRa~V~~~~~~-~~~~V~~vDy---Gn-----~~~v~~~~l~~l~~~ 120 (226)
T 4b9x_A 65 KAEIGRPCCAFFSG----DGNWYRALVKEILPS-GNVKVHFVDY---GN-----VEEVTTDQLQAILPQ 120 (226)
T ss_dssp CCCTTCEEEEEETT----TTEEEEEEEEEECSS-SEEEEECTTT---CC-----EEEEEGGGEECCCGG
T ss_pred CCCCCCEEEEEECC----CCeEEEEEEEEECCC-CeEEEEEEec---CC-----EEEEEHHHhccChHH
Confidence 35789999999753 578999999998653 6799999852 22 457899999999953
No 74
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=71.45 E-value=11 Score=29.64 Aligned_cols=49 Identities=14% Similarity=0.259 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCcccccCCCcchHHHHHHH
Q 024272 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKPGDNSLTKLKSL 60 (270)
Q Consensus 8 ~~~i~~~l~el~~lr~~~e~~l~~I~k~h~k~~~~~e~~~k~~~~~~~kL~~l 60 (270)
..+++.+-+||.+.+.+.+.....|+.+...+.. +++..+.|+.|||.+
T Consensus 3 ~~s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~----lEkERDFYF~KLRdI 51 (106)
T 4e61_A 3 LGSLVAIQAELTKSQETIGSLNEEIEQYKGTVST----LEIEREFYFNKLRDI 51 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 3567788889988888888888888888777764 357789999999985
No 75
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=70.41 E-value=28 Score=25.20 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=40.9
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceee
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIP 193 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIP 193 (270)
..++.|+.|-|+=. ++...+|.|++++...+.|-|.=.| + -.+-+.++.|.+
T Consensus 12 ~~f~vGddVLA~wt-----DGl~Y~gtI~~V~~~~gtC~V~F~D----~-----s~~w~~~kdi~~ 63 (66)
T 2eqj_A 12 CKFEEGQDVLARWS-----DGLFYLGTIKKINILKQSCFIIFED----S-----SKSWVLWKDIQT 63 (66)
T ss_dssp CCSCTTCEEEEECT-----TSCEEEEEEEEEETTTTEEEEEETT----T-----EEEEEETTTEEC
T ss_pred ccccCCCEEEEEEc-----cCcEEEeEEEEEccCCcEEEEEEcc----C-----CEEEEEeecccc
Confidence 45899999999863 5899999999999988999998652 1 246677777654
No 76
>3e9g_A Chromatin modification-related protein EAF3; chromatin remodeling, chromo domain, transcription factor, transcription regulation; 2.50A {Saccharomyces cerevisiae} PDB: 2k3x_A 3e9f_A*
Probab=69.61 E-value=6.2 Score=32.23 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=22.5
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTP 230 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p 230 (270)
-|.|.+|..|||.+=.+ .|.|.|....
T Consensus 5 ~p~f~~gE~VlcfHg~~--~YeAKIl~i~ 31 (130)
T 3e9g_A 5 EQEFALGGRCLAFHGPL--MYEAKILKIW 31 (130)
T ss_dssp --CCCTTCEEEEEETTE--EEEEEEEEEE
T ss_pred cccccCCCEEEEEeCCc--ceeeEEEEee
Confidence 36899999999999866 8999999883
No 77
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.58 E-value=17 Score=26.05 Aligned_cols=53 Identities=19% Similarity=0.164 Sum_probs=42.1
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFP 195 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP 195 (270)
.+..|+.|-|+-+ ++.++|+.|+.++....+|-|.=.| + ..+-+.++.|-++-
T Consensus 7 ~f~eGqdVLarWs-----DGlfYlgtV~kV~~~~~~ClV~FeD-----~----s~~wv~~kdi~~~~ 59 (63)
T 2e5q_A 7 GLTEGQYVLCRWT-----DGLYYLGKIKRVSSSKQSCLVTFED-----N----SKYWVLWKDIQHAG 59 (63)
T ss_dssp CCCTTCEEEEECT-----TSCEEEEEECCCCSTTSEEEEEETT-----S----CEEEEEGGGEECCS
T ss_pred ceecCCEEEEEec-----CCCEEEEEEEEEecCCCEEEEEEcc-----C----ceeEEEeecccccC
Confidence 4789999999875 5899999999999888899997652 1 25777788877653
No 78
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=68.74 E-value=3.9 Score=36.23 Aligned_cols=47 Identities=28% Similarity=0.326 Sum_probs=37.3
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCC-------CCCCeEEEecCCCCCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKR-------KTDDYLLEFDDDEEDGA 250 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~-------~~~~Y~L~FeDd~~~G~ 250 (270)
-|..|+.|.|.-...-.||.|.|+..-+.. ..-.|.++|||..+.|.
T Consensus 2 ~yki~~~vd~~d~~~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~ 55 (226)
T 3ask_A 2 LYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGV 55 (226)
T ss_dssp CSCTTCEEEEECTTTCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCE
T ss_pred ccccCceEEeeecCCCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCc
Confidence 388999999999999999999999875322 11349999999865554
No 79
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=66.64 E-value=32 Score=28.90 Aligned_cols=92 Identities=18% Similarity=0.250 Sum_probs=59.5
Q ss_pred ccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCC------------------CCeEEEecCCCCCCCCCcceeEEEeec
Q 024272 127 TCASLKGEQVAARVTAENADKDEWFVVKVMHFDRE------------------TKEFEVLDEEPGDDEEGGVQRKYKLHM 188 (270)
Q Consensus 127 ~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~------------------~~rYeV~D~dp~dd~e~~~~~~~~l~~ 188 (270)
..-.+.|+.|-|+-.. .+.|+=|.|+++-.. .--|.|.=.| .+|. ....++.
T Consensus 8 ~glYKinelVDarD~~----~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkydd---ype~---gvv~~~~ 77 (161)
T 3db3_A 8 LGLYKVNEYVDARDTN----MGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDD---YPEN---GVVQMNS 77 (161)
T ss_dssp CCSSCTTCEEEEECTT----TCCEEEEEEEEEEEC-----------------CCEEEEEEESS---CGGG---CEEEEEG
T ss_pred cceEEecceeeeeccC----CCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEecc---CccC---CeEecch
Confidence 3456899999998653 579999999996532 2346665421 2222 2567777
Q ss_pred CceeecCCCCCCCCCCCCCCCeEEEeC----CCCCcc-ccEEEecC
Q 024272 189 SFIIPFPKRNDSSIPEFPPGRHVLAVY----PGTTAL-YKATVVST 229 (270)
Q Consensus 189 ~~IIPLP~~~~~~~~~f~kg~~VLAlY----P~TT~F-Y~A~V~~~ 229 (270)
++|-|=-... -.+.++.+|+.||+=| |...-| |-|+|..-
T Consensus 78 ~~iRpRARt~-l~w~~L~vGqvVMvNYN~d~PkerGfWYDaeI~~~ 122 (161)
T 3db3_A 78 RDVRARARTI-IKWQDLEVGQVVMLNYNPDNPKERGFWYDAEISRK 122 (161)
T ss_dssp GGEECCCCCB-CCGGGCCTTCEEEEEECSSSTTSCCEEEEEEEEEE
T ss_pred hccccceEEe-ccHHHCCcCcEEEEecCCCCccccceeEEEEEeee
Confidence 7777643211 2234699999999998 434444 78887763
No 80
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=66.38 E-value=6.2 Score=30.76 Aligned_cols=45 Identities=20% Similarity=0.254 Sum_probs=34.5
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCCC---CCCCCeEEEecCCCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPRK---RKTDDYLLEFDDDEE 247 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~---~~~~~Y~L~FeDd~~ 247 (270)
...|..|+.|+|-. ..-.++||.|...|.. ...+.|.|.|=|+.+
T Consensus 17 ~~~~~~GdlVwaK~-kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~ 64 (110)
T 1ri0_A 17 QKEYKCGDLVFAKM-KGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHE 64 (110)
T ss_dssp SSSCCTTCEEEEEE-TTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTE
T ss_pred cCCCCCCCEEEEEe-CCCCCCCEEEecccHhhcCCCCCEEEEEEecCCC
Confidence 44699999999986 4556899999987732 234679999987754
No 81
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=61.37 E-value=5.9 Score=38.85 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=32.7
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDDE 246 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd~ 246 (270)
...+|+.|+|.|. --+||||.|..... .+.|.|.|-|-.
T Consensus 411 ~~~~G~~c~a~~~-d~~wyRa~I~~v~~---~~~~~V~fvDyG 449 (570)
T 3bdl_A 411 APRRGEFCIAKFV-DGEWYRARVEKVES---PAKIHVFYIDYG 449 (570)
T ss_dssp CCCTTCEEEEECT-TSCEEEEEEEEEEE---TTEEEEEETTTC
T ss_pred CCCcCCEEEEEEC-CCCEEEEEEEEEcC---CCeEEEEEEeCC
Confidence 3679999999999 67899999999852 467999998863
No 82
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=60.37 E-value=11 Score=28.42 Aligned_cols=40 Identities=15% Similarity=0.155 Sum_probs=29.9
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
..|.+|.+|-|+-+.-. .|.|+|...- .....|.|.|+|=
T Consensus 18 ~~F~vGmkLEA~D~~~~-~~~a~i~~v~--~~~~~v~VHfdGW 57 (88)
T 2eqm_A 18 ITFEIGARLEALDYLQK-WYPSRIEKID--YEEGKMLVHFERW 57 (88)
T ss_dssp CCCCSSCEEEEECTTSC-EEEEEEEEEE--TTTTEEEEEESSS
T ss_pred CcCCCCCEEEEEcCCCC-eeEEEEEEEe--ccCCEEEEEECCC
Confidence 45999999999987643 4888877652 2335699999884
No 83
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=60.25 E-value=14 Score=27.87 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=34.1
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCC---CCCCCeEEEecCCCCCCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRK---RKTDDYLLEFDDDEEDGA 250 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~---~~~~~Y~L~FeDd~~~G~ 250 (270)
.|..|+.|+|-. .---+.||.|...+.. ...+.|.|.|=++.+-+.
T Consensus 5 ~f~~GdlVwaK~-~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~aw 53 (94)
T 3qby_A 5 AFKPGDLVFAKM-KGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAF 53 (94)
T ss_dssp CCCTTCEEEECC-TTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCEEE
T ss_pred cCccCCEEEEec-CCCCCCCEEEeecccccccCCCCEEEEEEEcCCCcce
Confidence 599999999987 3445789999987631 124679999988754433
No 84
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=60.11 E-value=37 Score=27.31 Aligned_cols=64 Identities=9% Similarity=0.143 Sum_probs=40.8
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRND 199 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~ 199 (270)
..+..||+|-+..+..+.+.-.|-+|+|+...+ ..|-|.=.. =+. .-.=.++..+|-|+|...|
T Consensus 59 ~~f~~gd~VEV~~~~~d~ep~gWw~a~I~~~kg--~f~~V~y~~---~~~---~~~EiV~~~rlR~~n~~~p 122 (128)
T 3h8z_A 59 KEITEGDEVEVYSRANEQEPCGWWLARVRMMKG--DFYVIEYAA---CDA---TYNEIVTLERLRPVNPNPL 122 (128)
T ss_dssp -CCCTTCEEEEEECC---CCCEEEEEEEEEEET--TEEEEEETT---C-------CEEECGGGEEECCCCCC
T ss_pred cCCCCCCEEEEEecCCCCCcCccEEEEEEEeeC--CEEEEEEcC---CCC---CcceEEehhheEeCCCCCC
Confidence 567899999999876443434699999999875 456665321 011 1223566889999987544
No 85
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=58.21 E-value=21 Score=28.46 Aligned_cols=60 Identities=22% Similarity=0.251 Sum_probs=42.2
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCCC-------CCCCCeEEEecCCC-CCCCCCcccccCceEeeCCCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPRK-------RKTDDYLLEFDDDE-EDGALPQRTVPFHNVVPLPEG 267 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~-------~~~~~Y~L~FeDd~-~~G~~P~~~Vp~ryVv~~p~~ 267 (270)
...|..|+.|+|-.- .-.++||.|+.+|.. +....|.|.|=|+. +- -.|+..-+.++-++
T Consensus 20 ~~~~~~GdlVwaK~~-g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~-----aWv~~~~l~pf~~~ 87 (134)
T 2gfu_A 20 SSDFSPGDLVWAKME-GYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTR-----GWVSKRLLKPYTGS 87 (134)
T ss_dssp SCCCCTTSEEEECCT-TSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEE-----EEECGGGEEESCCT
T ss_pred CCCCCCCCEEEEeec-CCCCCCeeecchhhhhhhhhccCCCceEEEEECCCCCce-----EEECHHHcccCcch
Confidence 346999999999876 457999999998632 12346999997763 21 14666677766554
No 86
>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1
Probab=57.00 E-value=41 Score=26.88 Aligned_cols=98 Identities=14% Similarity=0.117 Sum_probs=63.2
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeC-CC---CeEEEecCCCCCCCCCcceeEEEeecCceeecCCCCC-----
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDR-ET---KEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKRND----- 199 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~-~~---~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~~~----- 199 (270)
.|++||.|-+... ++......|+.|.. +. ..|-.+-.+ ++ +..+++..+.|..+....
T Consensus 20 eL~~GD~Vla~d~-----~G~~~~s~V~~~~~r~~~~~~~f~~I~t~-----~g---~~L~lTp~H~i~v~~~~~~~~~~ 86 (145)
T 1at0_A 20 ELSIGDRVLSMTA-----NGQAVYSEVILFMDRNLEQMQNFVQLHTD-----GG---AVLTVTPAHLVSVWQPESQKLTF 86 (145)
T ss_dssp GCCTTCEEEEECT-----TSCEEEEEEEEEEEEEEEEEEEEEEEEET-----TS---CEEEECTTCEEEEEETTTTEEEE
T ss_pred HcCCCCEEEEECC-----CCCEEEEEEEEEEeeCCCcceeEEEEEEC-----CC---CEEEEeCCCEEEEecCCCCcEEE
Confidence 3679999988753 36687788877642 11 122222221 21 578999999999986431
Q ss_pred CCCCCCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeE
Q 024272 200 SSIPEFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYL 239 (270)
Q Consensus 200 ~~~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~ 239 (270)
...-++.+|+.|+....++.++.++.|.+--.....+.|.
T Consensus 87 v~A~~l~~GD~v~~~~~~~~~~~~~~V~~v~~~~~~G~ya 126 (145)
T 1at0_A 87 VFADRIEEKNQVLVRDVETGELRPQRVVKVGSVRSKGVVA 126 (145)
T ss_dssp EEGGGCCTTCEEEEECTTTCCEEEEEEEEEEEEEEEEEEE
T ss_pred EEHHHCcCCCEEEEecCCCCCEEEEEEEEEEEEEEeeeEc
Confidence 1223599999999887656779999998874322234455
No 87
>1xou_B Z5138 gene product; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.2
Probab=56.38 E-value=36 Score=25.46 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=39.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcCCcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 024272 16 RELDRLRKEQEDVLLEINKMHKKLHNTPEVIEKPGDNSLTKLKSLYIQAKELSENEVHVSNLLVGQLDALLP 87 (270)
Q Consensus 16 ~el~~lr~~~e~~l~~I~k~h~k~~~~~e~~~k~~~~~~~kL~~lY~~a~~~ae~E~~~~~~~~~~i~~l~~ 87 (270)
.-+..+-.+.+.+-.+.|-+.+|..++|+.+++ +-+|..-|+-. .|..+-..++.+|+.|+.
T Consensus 22 e~ikkiiaefdvvke~v~~l~ekakt~pqaae~-----ln~liegyt~g-----eerklydsalskieklie 83 (95)
T 1xou_B 22 EAIKKIIAEFDVVKESVNELSEKAKTDPQAAEK-----LNKLIEGYTYG-----EERKLYDSALSKIEKLIE 83 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHHHS-----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH-----HHHHHHhhcch-----hHHHHHHHHHHHHHHHHH
Confidence 333344455666667777788888887776444 33455556543 356666778888888884
No 88
>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B
Probab=55.81 E-value=38 Score=28.92 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=41.9
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
...+|+.++|+.. ++.|.=|.|+++..+ +.+.|.=+|= | ..-.++.++|.+||.
T Consensus 65 ~~~~G~~c~a~~~-----d~~wyRa~V~~~~~~-~~~~V~~vDy---G-----n~~~v~~~~lr~l~~ 118 (246)
T 2hqx_A 65 APRRGEFCIAKFV-----DGEWYRARVEKVESP-AKIHVFYIDY---G-----NREVLPSTRLGTLSP 118 (246)
T ss_dssp CCCTTCEEEEECT-----TSCEEEEEEEEEEET-TEEEEEETTT---C-----CEEEECGGGEECCCG
T ss_pred CCCCCCEEEEEcC-----CCCEEEEEEEEEcCC-CeEEEEEEeC---C-----CeEEEeHHHhhcCCH
Confidence 3578999999874 368999999998753 5899988742 2 245788999999985
No 89
>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*
Probab=54.72 E-value=36 Score=27.78 Aligned_cols=53 Identities=9% Similarity=0.108 Sum_probs=39.8
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
..++|+.+||+-.. ++.|.=|+|+++.++ +.++|.=+|= |+ ... .++|-+||.
T Consensus 47 ~~~~G~~c~A~~~~----d~~wyRa~I~~~~~~-~~~~V~fvDy---Gn---~~~----v~~lr~l~~ 99 (169)
T 3ntk_A 47 DLKEGALCVAQFPE----DEVFYRAQIRKVLDD-GKCEVHFIDF---GN---NAV----TQQFRQLPE 99 (169)
T ss_dssp CCCTTCEEEEEETT----TTEEEEEEEEEECST-TCEEEEETTT---TE---EEE----ESCEECCCH
T ss_pred CCCCCCEEEEEECC----CCcEEEEEEEEECCC-CEEEEEEEec---CC---eEE----hhhhhccCH
Confidence 46899999998753 578999999999865 4799998852 22 222 378999984
No 90
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=54.41 E-value=12 Score=28.80 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=33.9
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCC---C-----CCCCCCeEEEecCCCCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTP---R-----KRKTDDYLLEFDDDEEDG 249 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p---~-----~~~~~~Y~L~FeDd~~~G 249 (270)
..|..|+.|.|-... -.++||.|+.+. . +.....|.|.|=|+.+-+
T Consensus 7 ~~~~~GdlVwaK~~g-~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~a 60 (110)
T 2daq_A 7 GKLHYKQIVWVKLGN-YRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYY 60 (110)
T ss_dssp CSCCSSEEEEEECSS-SCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEE
T ss_pred CCCCCCCEEEEEeCC-CCCCceeeCChhhCCHHHhhccCCCCcEEEEEecCCCEE
Confidence 358899999999876 679999999872 1 112356999997765433
No 91
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=52.22 E-value=15 Score=28.19 Aligned_cols=57 Identities=23% Similarity=0.278 Sum_probs=38.0
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCC----------CCCCCCeEEEecCCCCCCCCCcccccCceEeeC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPR----------KRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPL 264 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~----------~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~ 264 (270)
...|..|+.|+|-. ..-.++||.|+.+.. .+..+.|.|.|=|+.+-+ .|+..-+.++
T Consensus 4 ~~~~~~GdlVwaK~-~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~~a-----Wv~~~~l~p~ 70 (109)
T 1h3z_A 4 RVNYKPGMRVLTKM-SGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYL-----WTGSDSLTPL 70 (109)
T ss_dssp CCCCCTTCEEEEEE-TTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCE-----EEEGGGEEEC
T ss_pred cccCCCCCEEEEEe-CCcCCCCEEEcccHHHhHHhhccCCCCCCCEEEEEEcCCCCEE-----EECHHHeeeC
Confidence 34699999999987 445699999995410 112467999997775332 3555555444
No 92
>3mea_A SAGA-associated factor 29 homolog; structural genomics consortium, SGC, nucleus, transcription, transcription regulation, chromosomal protein, DNA-binding; HET: M3L; 1.26A {Homo sapiens} PDB: 3meu_A* 3met_A* 3me9_A* 3mev_A* 3lx7_A 3mew_A
Probab=48.53 E-value=44 Score=28.47 Aligned_cols=63 Identities=11% Similarity=0.138 Sum_probs=42.6
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCC-CCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRE-TKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~-~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
..+.+|+.|-|.-+. ...+.-|.|++--.. .+.|.|.=. ++++.+|. .-...++++.||++|.
T Consensus 115 ~~f~~G~~VLAlYP~----TT~FY~A~V~~~p~~~~~~y~L~FE-dde~~dG~-sp~~~V~~RyVv~~ke 178 (180)
T 3mea_A 115 ALFQKEQLVLALYPQ----TTCFYRALIHAPPQRPQDDYSVLFE-DTSYADGY-SPPLNVAQRYVVACKE 178 (180)
T ss_dssp GSCCTTCEEEEECTT----SSEEEEEEEEECCSSTTCCEEEEEB-CTTSTTSB-CCCEEECGGGEEEC--
T ss_pred ccCCCCCEEEEeCCC----CceeeEEEEecCCCCCCCcEEEEEc-CCCccCCC-CCCcEecceEEEccCC
Confidence 458899999998863 467889999996443 367888633 33333321 1245899999999985
No 93
>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.40 E-value=24 Score=26.68 Aligned_cols=39 Identities=5% Similarity=0.014 Sum_probs=32.9
Q ss_pred CCCCCCeEEEeCCCCCccccEEEecCCCCCCCCCeEEEecCC
Q 024272 204 EFPPGRHVLAVYPGTTALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 204 ~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
....|..|-|.|+++-..|||.|...-++ ....|.|=|-
T Consensus 21 ~~k~g~~vaak~~d~n~WyRakV~~v~~~---~~veVl~~Dy 59 (85)
T 2eqk_A 21 KWENDMHCAVKIQDKNQWRRGQIIRMVTD---TLVEVLLYDV 59 (85)
T ss_dssp CCCSSCEEEEECSSSCCEEEEEEEEECSS---SEEEEECTTT
T ss_pred CccCCCEEEEEeCCCCeEEEEEEEEecCC---CeEEEEEEcc
Confidence 47899999999999999999999998543 3389999765
No 94
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=46.37 E-value=49 Score=27.63 Aligned_cols=28 Identities=18% Similarity=0.163 Sum_probs=23.8
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTP 230 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p 230 (270)
...|..|+.|.|-- .+--+|||.|+.+-
T Consensus 34 ~~~~~pgdlVWAK~-~GyPwwPa~Iidp~ 61 (158)
T 3pfs_A 34 RGDLEPLELVWAKC-RGYPSYPALIIDPK 61 (158)
T ss_dssp CSCCCTTCEEEEEC-TTSCEEEEEEECTT
T ss_pred CCCCCCCCEEEEec-CCCCCCCEEEcCCC
Confidence 35799999999998 67779999999853
No 95
>3l42_A Peregrin; transcription regulation, histone H3 acetylation, chromatin modification, structural genomics, structural genomics CONS SGC, activator; 1.30A {Homo sapiens} PDB: 3mo8_A* 2x4w_A* 2x35_A* 2x4x_A* 2x4y_A*
Probab=42.60 E-value=44 Score=27.03 Aligned_cols=28 Identities=14% Similarity=0.035 Sum_probs=23.8
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTP 230 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p 230 (270)
.+.|..|+.|.|-- .+-=+|+|.|+.|.
T Consensus 3 ~~~~~~~dlVWAK~-~gyP~wPa~Iidp~ 30 (130)
T 3l42_A 3 DSPLDALDLVWAKC-RGYPSYPALIIDPK 30 (130)
T ss_dssp CSSSCTTCEEEECC-TTSCCEEEEEECTT
T ss_pred cccCCCCCEEEEec-ccCCCCCEEEcCCC
Confidence 36799999999987 67779999999963
No 96
>3sd4_A PHD finger protein 20; tudor domain, transcription; 1.93A {Homo sapiens} PDB: 3q1j_A
Probab=40.41 E-value=76 Score=22.24 Aligned_cols=39 Identities=18% Similarity=0.259 Sum_probs=28.6
Q ss_pred ccccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEe
Q 024272 125 LDTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVL 168 (270)
Q Consensus 125 ~~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~ 168 (270)
++...+++|+++-|.-.. ..|..|+|+.++...++|-|.
T Consensus 8 ~~~~~F~vGmkLEa~d~~-----~p~~~AtV~~v~~~~~~~~Vh 46 (69)
T 3sd4_A 8 RRGISFEVGAQLEARDRL-----KNWYPAHIEDIDYEEGKVLIH 46 (69)
T ss_dssp CTTCCCSTTCEEEEECTT-----SCEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCcCCCCEEEEEECC-----CCccccEEEEEeccCCEEEEE
Confidence 346679999999887542 458899999986555666553
No 97
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=39.97 E-value=25 Score=28.71 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=34.0
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCC----CCCCeEEEecCCCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKR----KTDDYLLEFDDDEED 248 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~----~~~~Y~L~FeDd~~~ 248 (270)
..|..|+.|.|-- ..-.++||.|+.++... ..+.|.|.|=|+.+.
T Consensus 10 ~~~~~GDlVWaKv-kGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~~ 58 (147)
T 1khc_A 10 KEFGIGDLVWGKI-KGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKF 58 (147)
T ss_dssp SSCCTTCEEEEEE-TTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCE
T ss_pred ccCcCCCEEEEec-CCcCCCCEEeccchhhhcccCCCCeEEEEEecCCCE
Confidence 4699999999986 45578999999876321 236799999887543
No 98
>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*
Probab=38.13 E-value=27 Score=29.37 Aligned_cols=49 Identities=27% Similarity=0.314 Sum_probs=38.3
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCCCC----------------CCCCeEEEecCCCCCCCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPRKR----------------KTDDYLLEFDDDEEDGAL 251 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~~~----------------~~~~Y~L~FeDd~~~G~~ 251 (270)
.-|..|..|=|.=+..-+.+-|.|+..-+.. ..-.|.|+|||..++|..
T Consensus 9 glYKinelVDarD~~~GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv 73 (161)
T 3db3_A 9 GLYKVNEYVDARDTNMGAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVV 73 (161)
T ss_dssp CSSCTTCEEEEECTTTCCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEE
T ss_pred ceEEecceeeeeccCCCcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeE
Confidence 3599999999999999999999999832211 123499999998777763
No 99
>1rso_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity; NMR {Rattus norvegicus} SCOP: a.194.1.1
Probab=36.72 E-value=45 Score=22.78 Aligned_cols=39 Identities=18% Similarity=0.385 Sum_probs=25.7
Q ss_pred CCcccHHHHHHHHHHHHHHHh----h--------hHHHHHHHHHHHHhhcC
Q 024272 3 SSAPDIADILDKSRELDRLRK----E--------QEDVLLEINKMHKKLHN 41 (270)
Q Consensus 3 ~~~~~~~~i~~~l~el~~lr~----~--------~e~~l~~I~k~h~k~~~ 41 (270)
|+.+.+.++++.|.++..+=. . ++..+..+-|+|+|+++
T Consensus 4 ~~~~~v~~vL~sL~~i~~l~~~~~~d~~fL~~ll~~~~L~~Llkvhdki~~ 54 (56)
T 1rso_B 4 AAERAVSQVLDSLEEIHALTDSSEKDLDFLHSVFQDQHLHTLLDLYDKINT 54 (56)
T ss_dssp TTTHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHHHHHHHhcccccccCHHHHHHHHcCHHHHHHHHHHHHHHc
Confidence 444568888899988887711 1 33455667777777764
No 100
>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}
Probab=36.54 E-value=1.2e+02 Score=21.87 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=45.2
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
.....||.|-||=+ ++..+.-|+|++++..+.-|.|.==| + ..-+|..+.|-|+..
T Consensus 8 ~~~~vgd~VmaRW~----Gd~~yYparI~Si~s~~~~Y~V~fKd------g---T~e~L~~kDIkp~~s 63 (66)
T 2l8d_A 8 RKYADGEVVMGRWP----GSVLYYEVQVTSYDDASHLYTVKYKD------G---TELALKESDIRLQSS 63 (66)
T ss_dssp SSSCSSCEEEEECT----TSSCEEEEEEEEEETTTTEEEEEETT------S---CEEEEEGGGEECSSS
T ss_pred eEeecCCEEEEEcC----CCccceEEEEEEeccCCceEEEEecC------C---CEEeechhccccchh
Confidence 45789999999983 25689999999999889999997642 1 356899999999853
No 101
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A*
Probab=35.77 E-value=64 Score=30.44 Aligned_cols=59 Identities=14% Similarity=0.220 Sum_probs=43.1
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
..+.+|+.|-|.-+. ...+.-|+|++. +.+++|.|.=.|++ +. .....++++.|||+|.
T Consensus 456 ~~~~~~~~v~a~~p~----tt~fy~a~v~~~-~~~~~~~~~f~~~~--~~---~~~~~~~~~~v~~~~~ 514 (522)
T 3mp6_A 456 KNYPPGTKVLARYPE----TTTFYPAIVIGT-KRDGTCRLRFDGEE--EV---DKETEVTRRLVLPSPT 514 (522)
T ss_dssp CCCCTTCEEEEECTT----CSEEEEEEEEEE-CTTSCEEEEETTC---------CCEEECGGGEEECHH
T ss_pred cCCCCCCEEEEECCC----CcceEeEEEecC-CCCCeEEEEecCCC--CC---CccccccceeEEecCc
Confidence 458899999998763 467889999996 44568999876532 12 2356799999999995
No 102
>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}
Probab=35.51 E-value=95 Score=30.18 Aligned_cols=55 Identities=16% Similarity=0.268 Sum_probs=44.2
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCC
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPK 196 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~ 196 (270)
....+|+.++|+.. ++.|.=|.|+++.. .+.|+|.=+|= |+ .-.++.++|-+||.
T Consensus 410 ~~~~~G~~c~a~~~-----d~~wyRa~I~~v~~-~~~~~V~fvDy---Gn-----~e~v~~~~Lr~l~~ 464 (570)
T 3bdl_A 410 YAPRRGEFCIAKFV-----DGEWYRARVEKVES-PAKIHVFYIDY---GN-----REVLPSTRLGTLSP 464 (570)
T ss_dssp CCCCTTCEEEEECT-----TSCEEEEEEEEEEE-TTEEEEEETTT---CC-----EEEECGGGEECCCG
T ss_pred cCCCcCCEEEEEEC-----CCCEEEEEEEEEcC-CCeEEEEEEeC---CC-----eEEEEHHHCccCCH
Confidence 44678999999875 36899999999986 47899998853 22 45799999999995
No 103
>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}
Probab=33.38 E-value=28 Score=28.42 Aligned_cols=26 Identities=31% Similarity=0.434 Sum_probs=21.9
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTP 230 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p 230 (270)
+.|..|.+|||.+ --.+|.|.|...-
T Consensus 8 ~~f~~gekvl~~h--g~llYeAKVl~v~ 33 (136)
T 2k3y_A 8 QEFALGGRVLAFH--GPLMYEAKILKIW 33 (136)
T ss_dssp GSCCTTSEEEEEC--SSCEEEEEEEEEE
T ss_pred cccCCCCEEEEEE--CCeeEEEEEEEEE
Confidence 4699999999988 3459999999863
No 104
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=32.25 E-value=1.4e+02 Score=21.59 Aligned_cols=51 Identities=4% Similarity=0.099 Sum_probs=36.6
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeec
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPF 194 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPL 194 (270)
..+..|+-|-++-. ++.+.|+.||.. ..++|-|.=.| + ..+.+.++.|--|
T Consensus 14 ~~~~~geDVL~rw~-----DG~fYLGtIVd~--~~~~ClV~FeD-----~----S~~Wv~~kdi~kl 64 (69)
T 2xk0_A 14 VTYALQEDVFIKCN-----DGRFYLGTIIDQ--TSDQYLIRFDD-----Q----SEQWCEPDKLRKL 64 (69)
T ss_dssp CCCCTTCEEEEECT-----TSCEEEEEEEEE--CSSCEEEEETT-----C----CEEEECTTTEECS
T ss_pred cccccCCeEEEEec-----CCCEEEEEEEec--CCceEEEEecC-----C----cceeeeHHHHHhh
Confidence 77899999999864 589999999664 45778886532 2 2456666666544
No 105
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=32.04 E-value=77 Score=21.58 Aligned_cols=37 Identities=24% Similarity=0.344 Sum_probs=30.2
Q ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC
Q 024272 5 APDIADILDKSRELDRLRKEQEDVLLEINKMHKKLHN 41 (270)
Q Consensus 5 ~~~~~~i~~~l~el~~lr~~~e~~l~~I~k~h~k~~~ 41 (270)
+|+...+-.+-.|+..||.+.+.....+..+..++..
T Consensus 15 ~p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~~ 51 (53)
T 2yy0_A 15 TPENPEIELLRLELAEMKEKYEAIVEENKKLKAKLAQ 51 (53)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4567778888899999999999999999888877753
No 106
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=31.12 E-value=1.6e+02 Score=21.89 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 024272 52 NSLTKLKSLYIQAKELSENEVHVSNLLVGQLDALL 86 (270)
Q Consensus 52 ~~~~kL~~lY~~a~~~ae~E~~~~~~~~~~i~~l~ 86 (270)
..+.++...|..++.+++.-+.+.+.+.+-|+.-+
T Consensus 62 ~~l~~I~~~~~~~~~l~dEKv~lA~~~~dlvdkhi 96 (104)
T 4afl_A 62 ALLKQIQEAYGKCKEFGDDKVQLAMQTYEMVDKHI 96 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568889999999999999999998888877644
No 107
>2yrv_A AT-rich interactive domain-containing protein 4A; ARID domain-containing protein 4A, retinoblastoma-binding protein 1, RBBP-1, structural genomics; NMR {Homo sapiens}
Probab=30.93 E-value=23 Score=28.31 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=16.9
Q ss_pred eEEEeCCCC--CccccEEEecCC
Q 024272 210 HVLAVYPGT--TALYKATVVSTP 230 (270)
Q Consensus 210 ~VLAlYP~T--T~FY~A~V~~~p 230 (270)
+|.++++++ +++|||.|++|-
T Consensus 15 kVV~V~~~~kk~~WfPALVVsPs 37 (117)
T 2yrv_A 15 KVVSVVSATERTEWYPALVISPS 37 (117)
T ss_dssp SEEEEECSSCSSCEEEEEEECCS
T ss_pred cEEEEecCCCCCceeeeEEECCC
Confidence 367788875 699999999984
No 108
>2w4y_A Caulobacter 5 virus-like particle; structure, assembly, calcium ION, RNA; HET: AMP; 2.90A {Unclassified levivirus} PDB: 2w4z_A*
Probab=30.59 E-value=22 Score=27.44 Aligned_cols=48 Identities=25% Similarity=0.335 Sum_probs=33.6
Q ss_pred CCCCCccccEEEecCCCCC--CC---CCeEEEecCC-CCCCCCCcccccCceEee
Q 024272 215 YPGTTALYKATVVSTPRKR--KT---DDYLLEFDDD-EEDGALPQRTVPFHNVVP 263 (270)
Q Consensus 215 YP~TT~FY~A~V~~~p~~~--~~---~~Y~L~FeDd-~~~G~~P~~~Vp~ryVv~ 263 (270)
.|+|++-|+|.|.-....- .+ ..-.|.|-.. ++.|.+|. .|-|-|||.
T Consensus 34 lpetsssfrakvrhtkesvkpnqvqyerhnveftetvyasgstpe-fvrqayvvi 87 (122)
T 2w4y_A 34 LPETSSSFRAKVRHTKESVKPNQVQYERHNVEFTETVYASGSTPE-FVRQAYVVI 87 (122)
T ss_dssp EECSSEEEEEEEEEEECCCCTTSCCEEEEEEEEEEEECCBTTBCC-EEEEEEEEE
T ss_pred ccccchHHHHHhhhcccccCccceeeeeccceEEEEEEecCCChH-HhheeeEEE
Confidence 4789999999997653211 11 2247899777 89999875 577778774
No 109
>3ilk_A Uncharacterized tRNA/RRNA methyltransferase HI038; APC63004, methylase family protein, haemophilus influenzae R structural genomics; 2.01A {Haemophilus influenzae}
Probab=29.73 E-value=1e+02 Score=26.91 Aligned_cols=32 Identities=31% Similarity=0.558 Sum_probs=27.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 024272 52 NSLTKLKSLYIQAKELSENEVHVSNLLVGQLDA 84 (270)
Q Consensus 52 ~~~~kL~~lY~~a~~~ae~E~~~~~~~~~~i~~ 84 (270)
....+||.||..| ...+.|.++|+.++.+|..
T Consensus 204 ~~~~~lr~l~~Ra-~~~~~E~~~LrGi~~~~~~ 235 (244)
T 3ilk_A 204 GVMRKLKRLYYRA-KLEKNELNILNGMLSAVEK 235 (244)
T ss_dssp HHHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHH
Confidence 5677899999886 4789999999999888765
No 110
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=29.16 E-value=2e+02 Score=22.83 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhh
Q 024272 14 KSRELDRLRKEQEDVLLEINKMHKKL 39 (270)
Q Consensus 14 ~l~el~~lr~~~e~~l~~I~k~h~k~ 39 (270)
+.-||++||+++|.+. |+|+-.
T Consensus 37 L~~ELeRLr~~~d~~~----K~HE~k 58 (115)
T 3vem_A 37 FLHELEKLRRESENSK----KTFEEK 58 (115)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHH
Confidence 4679999999998654 555533
No 111
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=27.28 E-value=1.2e+02 Score=25.92 Aligned_cols=68 Identities=10% Similarity=0.034 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCc-ccccCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024272 11 ILDKSRELDRLRKEQEDVLLEINKMHKKLHNTP-EVIEKP-GDNSLTKLKSLYIQAKELSENEVHVSNLL 78 (270)
Q Consensus 11 i~~~l~el~~lr~~~e~~l~~I~k~h~k~~~~~-e~~~k~-~~~~~~kL~~lY~~a~~~ae~E~~~~~~~ 78 (270)
+.++...|+.+|+..+..+..++.+...-..-. +.-+.+ +++.-.-|......+.+.+++||..|..-
T Consensus 81 ll~l~~~Le~~r~~l~~~l~~~~~L~~~~~~k~q~~~~~ls~~~sp~~L~~~L~~a~~e~eeeS~~l~~~ 150 (192)
T 2p22_C 81 LEENFEDLHEQKDKVQALLENARILESKYVASWQDYHSEFSKKYGDIALKKKLEQNTKKLDEESSQLETT 150 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555557777777777666554432210 010011 23333456677777888899998886553
No 112
>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=27.19 E-value=73 Score=23.12 Aligned_cols=39 Identities=10% Similarity=0.164 Sum_probs=26.5
Q ss_pred cccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCC--CeEEEe
Q 024272 128 CASLKGEQVAARVTAENADKDEWFVVKVMHFDRET--KEFEVL 168 (270)
Q Consensus 128 ~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~--~rYeV~ 168 (270)
..+.+|+.|-++-.. +..+.|..|+|+++.... ..|-|-
T Consensus 4 ~~~~vGekV~~~~~d--~k~~~~y~AkIl~i~~~~~~~~Y~VH 44 (76)
T 2lcc_A 4 EPCLTGTKVKVKYGR--GKTQKIYEASIKSTEIDDGEVLYLVH 44 (76)
T ss_dssp CCSSTTCEEEEEEEE--TTEEEEEEEEEEEEEEETTEEEEEEE
T ss_pred cccCCCCEEEEEeCC--CCCCCEEEEEEEEEEccCCceEEEEE
Confidence 457899999998752 113589999999976432 235553
No 113
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=26.71 E-value=27 Score=26.89 Aligned_cols=44 Identities=16% Similarity=0.098 Sum_probs=31.1
Q ss_pred CCCCCCCCeEEEeCCCCCccccEEEecCCC---C-----CCCCCeEEEecCCC
Q 024272 202 IPEFPPGRHVLAVYPGTTALYKATVVSTPR---K-----RKTDDYLLEFDDDE 246 (270)
Q Consensus 202 ~~~f~kg~~VLAlYP~TT~FY~A~V~~~p~---~-----~~~~~Y~L~FeDd~ 246 (270)
.-.|..|+.|+|-.- .--.+||.|+.++. . ...+.|.|.|=|+.
T Consensus 3 ~~~~~~GdlVwaK~~-gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~ 54 (108)
T 2l89_A 3 DDRLNFGDRILVKAP-GYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDF 54 (108)
T ss_dssp SCCCCTTEEEEEECS-SSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTT
T ss_pred CCcccCCCEEEEEeC-CcCCCceEecCcccCcHHHhhccCCCCeEEEEECCCC
Confidence 457999999999854 44579999987531 1 11356999997764
No 114
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=25.49 E-value=76 Score=26.17 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=40.2
Q ss_pred CCCCCCCeEEEeCCCCCccccEEEecCCC----CCCCCCeEEEecCCCCCCCCCcccccCceEeeCC
Q 024272 203 PEFPPGRHVLAVYPGTTALYKATVVSTPR----KRKTDDYLLEFDDDEEDGALPQRTVPFHNVVPLP 265 (270)
Q Consensus 203 ~~f~kg~~VLAlYP~TT~FY~A~V~~~p~----~~~~~~Y~L~FeDd~~~G~~P~~~Vp~ryVv~~p 265 (270)
..|..|+.|.|-- .--.+.||.|+.++. ....+.|.|.|=|+.+.+ .|+..-++++-
T Consensus 15 ~~f~~GDLVWaKv-kG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~a-----wv~~~~L~pf~ 75 (154)
T 3llr_A 15 RGFGIGELVWGKL-RGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFS-----VVCVEKLMPLS 75 (154)
T ss_dssp CCCCTTCEEEECC-TTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCEE-----EEEGGGEEEGG
T ss_pred CCCccCCEEEEec-CCCCCCCEEEecccccccccCCCCEEEEEEeCCCCEE-----EEcHHHCcchh
Confidence 4699999999998 447899999999752 122467999998875332 45555555543
No 115
>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A
Probab=24.86 E-value=1.8e+02 Score=21.56 Aligned_cols=39 Identities=15% Similarity=0.169 Sum_probs=29.3
Q ss_pred cccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCCCCeEEEec
Q 024272 126 DTCASLKGEQVAARVTAENADKDEWFVVKVMHFDRETKEFEVLD 169 (270)
Q Consensus 126 ~~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~~~rYeV~D 169 (270)
+...+++|++|-|.-. .+.|..|.|+.++....+|-|.=
T Consensus 16 ~~~~F~vGmkLEA~D~-----~~~~~~a~i~~v~~~~~~v~VHf 54 (88)
T 2eqm_A 16 PGITFEIGARLEALDY-----LQKWYPSRIEKIDYEEGKMLVHF 54 (88)
T ss_dssp SSCCCCSSCEEEEECT-----TSCEEEEEEEEEETTTTEEEEEE
T ss_pred CcCcCCCCCEEEEEcC-----CCCeeEEEEEEEeccCCEEEEEE
Confidence 3567899999988654 35799999988876667777743
No 116
>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3
Probab=24.11 E-value=79 Score=24.13 Aligned_cols=38 Identities=11% Similarity=0.248 Sum_probs=27.4
Q ss_pred CCCeEEEeCCCCCccccEEEecCCCCC---CCCCeEEEecCC
Q 024272 207 PGRHVLAVYPGTTALYKATVVSTPRKR---KTDDYLLEFDDD 245 (270)
Q Consensus 207 kg~~VLAlYP~TT~FY~A~V~~~p~~~---~~~~Y~L~FeDd 245 (270)
.|++||...++ -.+|+|.|...-... ....|-|.|.|=
T Consensus 17 ~~e~vlc~~~d-g~~yeAeIl~ir~~~~~~~~~~YYVHY~g~ 57 (92)
T 2bud_A 17 PDKIYFIRRED-GTVHRGQVLQSRTTENAAAPDEYYVHYVGL 57 (92)
T ss_dssp TTSCEEEECTT-SCEEEEEEEEEECTTTCSSCCEEEEECSSS
T ss_pred CCCEEEEEeCC-CCEEEEEEEEEeeccCCCCCcEEEEEeCCc
Confidence 38899999963 469999999863221 123688998774
No 117
>3qr8_A GPV, baseplate assembly protein V; beta-helix, OB-fold, phage baseplate, iron-binding, cell MEM piercing, tail spike, viral protein; HET: MSE; 2.03A {Enterobacteria phage P2}
Probab=24.06 E-value=3.2e+02 Score=22.87 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=45.7
Q ss_pred EEEEEEEeEeCCCCeEEEecCCCCCCCCCcceeEEEeecCceeecCCC--CC-CCCCCCCCCCeEEEeCCC---CCcccc
Q 024272 150 WFVVKVMHFDRETKEFEVLDEEPGDDEEGGVQRKYKLHMSFIIPFPKR--ND-SSIPEFPPGRHVLAVYPG---TTALYK 223 (270)
Q Consensus 150 WILa~Vv~~~~~~~rYeV~D~dp~dd~e~~~~~~~~l~~~~IIPLP~~--~~-~~~~~f~kg~~VLAlYP~---TT~FY~ 223 (270)
...+.|..++.+..+..|+-- + . ...|+|.=.. .. ..+..-.+|+.||-+||. ...|.-
T Consensus 18 ir~G~V~~vd~~~~rvrV~~~----~-----~------~t~wl~~~~~~ag~~~~~~~P~vGeqV~v~f~~Gd~~~gvVl 82 (211)
T 3qr8_A 18 IRTGIIVETDLNAGRCRVQTG----G-----M------CTDWLQWLTHRAGRSRTWWAPSVGEQVLILAVGGELDTAFVL 82 (211)
T ss_dssp EEEEEEEEEETTTTEEEEEET----T-----E------ECCCEEECCSCBSSSBCCCCCCTTCEEEEEECCTTTCCEEEE
T ss_pred cEEEEEEEEECCCCEEEEEeC----C-----c------cceeEEeEcccccCCceEeCCCCCCEEEEEeCCCccCccEEE
Confidence 346888888888888888641 1 1 1234443221 11 334447899999999996 333333
Q ss_pred EEEecC---CCCCCCCCeEEEecCC
Q 024272 224 ATVVST---PRKRKTDDYLLEFDDD 245 (270)
Q Consensus 224 A~V~~~---p~~~~~~~Y~L~FeDd 245 (270)
+-+... |+....+.|.++|.|-
T Consensus 83 g~~~s~~~~~P~~~~~~~~~~~~dG 107 (211)
T 3qr8_A 83 PGIYSGDNPSPSVSADALHIRFPDG 107 (211)
T ss_dssp EEECCSSSCCSCCCSSCEEEECTTS
T ss_pred eeecCcccCCCCCCCCeEEEEcCCC
Confidence 332221 1122335688888663
No 118
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=22.63 E-value=2.5e+02 Score=26.59 Aligned_cols=70 Identities=14% Similarity=0.097 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcC-CcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024272 8 IADILDKSRELDRLRKEQEDVLLEINKMHKKLHN-TPEVIEKPGDNSLTKLKSLYIQAKELSENEVHVSNLL 78 (270)
Q Consensus 8 ~~~i~~~l~el~~lr~~~e~~l~~I~k~h~k~~~-~~e~~~k~~~~~~~kL~~lY~~a~~~ae~E~~~~~~~ 78 (270)
|..|.+.|.++.+.-+.....+.+|..+-++-++ ..++ +..--.+...|+.-|.-.|........-|+.+
T Consensus 69 Ie~L~~~L~~~s~s~~~~~~y~~~~~~~lk~~~~q~~dn-dn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~L 139 (390)
T 1deq_A 69 INKLRDSLFNYQKNSKDSNTLTKNIVELMRGDFAKANNN-DNTFKQINEDLRSRIEILRRKVIEQVQRINLL 139 (390)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhccc-hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 6777888888888877777777777444444444 2122 22223334456665555555444433333333
No 119
>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3
Probab=21.22 E-value=1.1e+02 Score=24.37 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=25.6
Q ss_pred ccCCCCeeEEeeccCCCCCCCEEEEEEEeEeC----CCCeEEEe
Q 024272 129 ASLKGEQVAARVTAENADKDEWFVVKVMHFDR----ETKEFEVL 168 (270)
Q Consensus 129 ~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~----~~~rYeV~ 168 (270)
.+.+|+.|.++-. ++.|-.|+|+++.. ....|.|-
T Consensus 12 ~~~vGe~v~~~~~-----d~~~y~AkIl~i~~~~~~~~~~YyVH 50 (133)
T 1wgs_A 12 TVEIGETYLCRRP-----DSTWHSAEVIQSRVNDQEGREEFYVH 50 (133)
T ss_dssp CCCTTSEEEEEET-----TTEEEEEEEEEEEEETTTTEEEEEEE
T ss_pred ccCCCCEEEEEeC-----CCCEEEEEEEEEEeccCCCceEEEEe
Confidence 4789999999864 36899999999752 23346664
No 120
>1wjq_A KIAA1798 protein; MBT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.9.3
Probab=20.24 E-value=1.4e+02 Score=23.24 Aligned_cols=38 Identities=21% Similarity=0.130 Sum_probs=31.9
Q ss_pred CCCCCCeEEEeCCCC-CccccEEEecCCCCCCCCCeEEEecCC
Q 024272 204 EFPPGRHVLAVYPGT-TALYKATVVSTPRKRKTDDYLLEFDDD 245 (270)
Q Consensus 204 ~f~kg~~VLAlYP~T-T~FY~A~V~~~p~~~~~~~Y~L~FeDd 245 (270)
.|.+|.++=|+=|.- +.++.|+|...- .....|.||+-
T Consensus 13 ~F~~GMKLEAvD~~~p~~icvATV~~v~----g~rl~v~fDGw 51 (107)
T 1wjq_A 13 GFQKKMKLEVVDKRNPMFIRVATVADTD----DHRVKVHFDGW 51 (107)
T ss_dssp SCCSSCEEEEECTTCTTCEEEEEEEEEC----SSCEEEECSSS
T ss_pred cCCCCCEEEEEcCCCCCcEEeEEEEEec----CCEEEEEeCCC
Confidence 599999999999984 568999999983 35689999875
No 121
>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}
Probab=20.07 E-value=1.5e+02 Score=22.39 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=28.0
Q ss_pred ccccCCCCeeEEeeccCCCCCCCEEEEEEEeEeCC--CCeEEEecC
Q 024272 127 TCASLKGEQVAARVTAENADKDEWFVVKVMHFDRE--TKEFEVLDE 170 (270)
Q Consensus 127 ~~~~~~G~~VAa~v~~~~~~~~~WILa~Vv~~~~~--~~rYeV~D~ 170 (270)
...+.+|+.|-++- ++.|-.|+|+++... ...|.|-=.
T Consensus 21 ~~~~~vG~kv~v~~------~~~~y~AkIl~ir~~~~~~~YyVHY~ 60 (92)
T 2ro0_A 21 VDDIIIKCQCWVQK------NDEERLAEILSINTRKAPPKFYVHYV 60 (92)
T ss_dssp TTSCCTTCEEEEEE------TTEEEEEEEEEEECSSSSCEEEEEET
T ss_pred cccccCCCEEEEEE------CCEEEEEEEEEEEEcCCCcEEEEEeC
Confidence 34578999998874 468999999997632 456777543
Done!