Query 024273
Match_columns 270
No_of_seqs 119 out of 1132
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 03:21:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024273.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024273hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 1.5E-61 3.2E-66 448.2 24.3 263 6-269 95-373 (408)
2 KOG2287 Galactosyltransferases 100.0 4.2E-50 9.2E-55 372.9 20.5 208 42-257 94-305 (349)
3 PLN03133 beta-1,3-galactosyltr 100.0 5.1E-50 1.1E-54 390.4 21.9 218 42-268 384-609 (636)
4 KOG2288 Galactosyltransferases 100.0 4.5E-50 9.8E-55 347.5 15.8 228 40-269 8-238 (274)
5 PF01762 Galactosyl_T: Galacto 100.0 4.1E-49 8.9E-54 338.5 15.8 191 57-254 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 2.6E-34 5.7E-39 263.3 15.3 191 39-248 76-308 (382)
7 PF02434 Fringe: Fringe-like; 99.8 7.2E-21 1.6E-25 169.8 11.0 193 43-261 6-210 (252)
8 KOG2246 Galactosyltransferases 99.7 2.4E-16 5.2E-21 147.1 12.3 171 40-257 88-272 (364)
9 PLN03153 hypothetical protein; 99.3 8.3E-11 1.8E-15 112.7 15.2 182 43-261 122-320 (537)
10 KOG3708 Uncharacterized conser 97.3 0.0023 5.1E-08 61.7 10.7 94 128-244 83-182 (681)
11 PF01755 Glyco_transf_25: Glyc 96.4 0.063 1.4E-06 45.6 11.9 99 47-162 4-106 (200)
12 PF13641 Glyco_tranf_2_3: Glyc 96.3 0.14 3E-06 43.7 13.5 186 45-249 3-198 (228)
13 TIGR03472 HpnI hopanoid biosyn 96.1 0.12 2.6E-06 48.5 12.8 186 44-249 42-241 (373)
14 TIGR03469 HonB hopene-associat 95.6 0.56 1.2E-05 44.3 15.0 155 80-247 70-248 (384)
15 PF13506 Glyco_transf_21: Glyc 94.8 0.03 6.6E-07 47.2 3.6 126 125-254 16-147 (175)
16 cd02520 Glucosylceramide_synth 94.7 2.2 4.7E-05 35.7 14.8 135 80-250 30-166 (196)
17 cd02525 Succinoglycan_BP_ExoA 94.6 1.7 3.6E-05 37.2 14.2 157 80-249 31-196 (249)
18 cd04186 GT_2_like_c Subfamily 94.2 2.2 4.8E-05 33.6 13.6 80 139-249 73-153 (166)
19 cd06532 Glyco_transf_25 Glycos 93.4 1.2 2.7E-05 35.2 10.2 113 47-228 2-119 (128)
20 cd02510 pp-GalNAc-T pp-GalNAc- 93.0 5.7 0.00012 35.7 15.1 114 132-245 75-209 (299)
21 cd06421 CESA_CelA_like CESA_Ce 92.1 6.6 0.00014 33.1 15.8 123 133-259 77-211 (234)
22 PF00535 Glycos_transf_2: Glyc 91.8 1.7 3.6E-05 34.1 9.1 92 131-222 69-168 (169)
23 cd04192 GT_2_like_e Subfamily 91.5 4.8 0.0001 33.8 12.1 111 131-243 73-190 (229)
24 PRK11204 N-glycosyltransferase 91.3 8.5 0.00018 36.4 14.7 140 98-249 98-248 (420)
25 cd06439 CESA_like_1 CESA_like_ 91.1 9.2 0.0002 32.9 16.2 119 132-256 101-226 (251)
26 cd04196 GT_2_like_d Subfamily 90.6 8.8 0.00019 31.7 13.6 117 136-256 75-200 (214)
27 cd06427 CESA_like_2 CESA_like_ 90.5 2.7 5.9E-05 36.3 9.9 117 130-249 74-200 (241)
28 cd06433 GT_2_WfgS_like WfgS an 90.2 1.9 4.2E-05 35.2 8.2 116 130-249 65-182 (202)
29 PF13632 Glyco_trans_2_3: Glyc 90.0 1.5 3.2E-05 36.5 7.4 116 143-261 1-126 (193)
30 cd06435 CESA_NdvC_like NdvC_li 89.9 10 0.00022 32.3 12.8 114 131-250 73-198 (236)
31 cd06423 CESA_like CESA_like is 88.8 7 0.00015 30.4 10.3 94 130-223 68-170 (180)
32 cd04191 Glucan_BSP_ModH Glucan 88.7 5.1 0.00011 35.7 10.3 194 46-249 2-219 (254)
33 cd04185 GT_2_like_b Subfamily 88.3 13 0.00029 30.7 13.6 93 128-248 68-161 (202)
34 cd06420 GT2_Chondriotin_Pol_N 87.8 3.6 7.9E-05 33.3 8.2 96 132-247 71-166 (182)
35 cd02526 GT2_RfbF_like RfbF is 86.9 18 0.00038 30.6 15.0 122 126-249 62-192 (237)
36 PRK14583 hmsR N-glycosyltransf 85.8 34 0.00074 32.8 15.3 185 43-249 75-269 (444)
37 cd06434 GT2_HAS Hyaluronan syn 85.4 9.7 0.00021 32.2 9.9 155 81-249 29-201 (235)
38 cd04184 GT2_RfbC_Mx_like Myxoc 84.8 20 0.00044 29.4 15.4 112 132-253 75-193 (202)
39 PF04646 DUF604: Protein of un 83.5 1.7 3.7E-05 38.9 4.3 52 208-259 12-67 (255)
40 cd06437 CESA_CaSu_A2 Cellulose 83.4 22 0.00048 30.2 11.3 112 131-249 78-201 (232)
41 cd04195 GT2_AmsE_like GT2_AmsE 83.1 18 0.0004 29.7 10.4 115 132-254 72-196 (201)
42 COG1216 Predicted glycosyltran 82.2 7.8 0.00017 35.1 8.4 137 108-248 55-207 (305)
43 PRK10714 undecaprenyl phosphat 82.1 18 0.00039 33.4 10.8 134 80-224 38-174 (325)
44 TIGR03111 glyc2_xrt_Gpos1 puta 81.9 17 0.00036 35.0 10.9 112 130-244 121-249 (439)
45 cd06442 DPM1_like DPM1_like re 81.5 30 0.00065 28.9 11.6 83 140-223 78-167 (224)
46 PF10111 Glyco_tranf_2_2: Glyc 79.7 45 0.00098 29.8 14.9 164 79-249 33-210 (281)
47 cd04187 DPM1_like_bac Bacteria 77.0 17 0.00036 29.5 8.1 134 80-226 29-166 (181)
48 cd02514 GT13_GLCNAC-TI GT13_GL 75.9 9.9 0.00021 35.5 7.0 80 131-222 88-174 (334)
49 PLN02726 dolichyl-phosphate be 72.5 62 0.0014 27.8 15.1 113 131-247 84-204 (243)
50 cd04179 DPM_DPG-synthase_like 72.3 16 0.00035 29.4 6.9 130 81-223 29-167 (185)
51 COG1215 Glycosyltransferases, 72.0 87 0.0019 29.3 15.5 160 81-254 85-260 (439)
52 PRK14716 bacteriophage N4 adso 71.9 1.1E+02 0.0023 30.3 13.8 106 140-249 158-277 (504)
53 TIGR01556 rhamnosyltran L-rham 71.3 26 0.00057 30.9 8.5 117 130-248 64-188 (281)
54 cd02522 GT_2_like_a GT_2_like_ 71.1 35 0.00077 28.3 8.9 111 133-249 65-175 (221)
55 PRK05454 glucosyltransferase M 68.5 57 0.0012 33.6 11.0 202 40-253 121-350 (691)
56 TIGR03030 CelA cellulose synth 68.4 81 0.0018 32.5 12.3 131 123-257 212-356 (713)
57 cd06438 EpsO_like EpsO protein 66.0 71 0.0015 26.0 11.6 90 128-221 68-169 (183)
58 cd00761 Glyco_tranf_GTA_type G 57.3 77 0.0017 23.5 10.1 30 134-163 71-100 (156)
59 cd06913 beta3GnTL1_like Beta 1 55.9 1.2E+02 0.0026 25.3 9.5 43 134-176 78-120 (219)
60 PRK11234 nfrB bacteriophage N4 54.2 2.7E+02 0.0059 28.9 13.7 190 43-249 63-274 (727)
61 cd04190 Chitin_synth_C C-termi 51.8 19 0.00041 31.3 3.8 107 139-249 72-208 (244)
62 PF09258 Glyco_transf_64: Glyc 47.4 25 0.00053 31.3 3.8 101 139-245 74-181 (247)
63 cd04188 DPG_synthase DPG_synth 44.9 1.5E+02 0.0033 24.5 8.3 165 79-254 29-201 (211)
64 PRK11498 bcsA cellulose syntha 39.5 5E+02 0.011 27.6 13.0 121 123-249 323-457 (852)
65 PF03071 GNT-I: GNT-I family; 36.9 2.3E+02 0.0049 27.6 8.7 117 100-224 137-271 (434)
66 COG5454 Predicted secreted pro 36.9 17 0.00037 26.8 0.9 22 49-70 40-62 (89)
67 PLN03181 glycosyltransferase; 28.2 2.9E+02 0.0062 26.9 7.7 94 60-155 109-214 (453)
68 PF06306 CgtA: Beta-1,4-N-acet 26.9 81 0.0017 29.5 3.7 39 126-164 160-199 (347)
69 PRK10018 putative glycosyl tra 26.0 4.8E+02 0.01 23.3 10.2 33 133-165 78-110 (279)
70 COG3306 Glycosyltransferase in 25.1 1.1E+02 0.0023 27.5 4.1 52 206-257 154-207 (255)
71 PLN03182 xyloglucan 6-xylosylt 24.6 2.5E+02 0.0055 27.1 6.7 93 60-153 106-210 (429)
72 PF02485 Branch: Core-2/I-Bran 24.5 4.5E+02 0.0098 22.5 9.8 141 101-244 45-200 (244)
73 KOG1022 Acetylglucosaminyltran 23.2 67 0.0014 32.1 2.6 110 140-261 519-645 (691)
74 cd06436 GlcNAc-1-P_transferase 22.6 67 0.0014 26.5 2.3 77 141-222 90-178 (191)
75 PF04666 Glyco_transf_54: N-Ac 22.2 3.9E+02 0.0086 24.5 7.4 18 139-156 168-185 (297)
76 PHA01631 hypothetical protein 21.5 3.6E+02 0.0077 22.8 6.2 63 139-224 70-132 (176)
77 cd00218 GlcAT-I Beta1,3-glucur 21.2 3.3E+02 0.0072 24.0 6.4 83 129-219 81-172 (223)
78 PF13704 Glyco_tranf_2_4: Glyc 20.9 3.2E+02 0.007 19.5 6.5 72 78-157 16-88 (97)
79 KOG4179 Lysyl hydrolase/glycos 20.7 2E+02 0.0043 28.0 5.1 109 24-162 21-131 (568)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.5e-61 Score=448.23 Aligned_cols=263 Identities=44% Similarity=0.851 Sum_probs=227.7
Q ss_pred hhhhhhHHHHhhhhhhhhhcCc--ccccccc-----CCCCCCCceeEEEEEEcCCCChhhHHHHHHhhccCCccccccc-
Q 024273 6 KDLERRIVEAEMDLTLAKSQGY--LKNQLLQ-----SGSSSGKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLE- 77 (270)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-----~~~~~~~k~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~- 77 (270)
++|+++|+..||.|+.|++.++ .+...++ .+++..+|++|+|+|+|+|++++||++||+||++....+.+++
T Consensus 95 ~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~ 174 (408)
T PLN03193 95 QTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEE 174 (408)
T ss_pred HHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHHHHcCCccccccccc
Confidence 6789999999999999999888 4443332 2456677799999999999999999999999999764333333
Q ss_pred cCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHH
Q 024273 78 ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 157 (270)
Q Consensus 78 ~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~ 157 (270)
..++.++||+|.+++++..++++|.+|+++|||||++ ||.|+|.|||.||+++|+|+.++++++|++|+|||+|||+++
T Consensus 175 ~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~l-DfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~ 253 (408)
T PLN03193 175 EKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRL-DHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIAT 253 (408)
T ss_pred CCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEE-ecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHH
Confidence 4679999999998765556888999999999999977 699999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccC-CCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCCh
Q 024273 158 LIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFG-DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDD 236 (270)
Q Consensus 158 L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~-~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~ED 236 (270)
|+.+|.....++++|+|++..+++...+..+|++|+||.+. +++.|||||+|+||+||+|+|+.|+.++..++.+++||
T Consensus 254 L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~ED 333 (408)
T PLN03193 254 LGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYISINQHVLHKYANED 333 (408)
T ss_pred HHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHHhChhhhcccCcch
Confidence 99999876656679999997764433456678888866554 67899999999999999999999998888999999999
Q ss_pred hhHHHHhhcCCCeEecCCCcccCCCCC-------CCcccc
Q 024273 237 TSVGSWMMGVRATYKDDNRFCCSSINR-------DKVCSM 269 (270)
Q Consensus 237 v~vG~~l~~~~v~~~~~~~f~~~~~~~-------~~~~~~ 269 (270)
|++|.|+.+++|+++|+++|||+++.. .++|+.
T Consensus 334 V~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~ 373 (408)
T PLN03193 334 VSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVA 373 (408)
T ss_pred hhhhhHhccCCceeeecccccCCCCccccccccCCCeeEE
Confidence 999999999999999999999988764 688863
No 2
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.2e-50 Score=372.93 Aligned_cols=208 Identities=22% Similarity=0.306 Sum_probs=191.0
Q ss_pred ceeEEEEEEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccC
Q 024273 42 KLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQ 121 (270)
Q Consensus 42 k~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy 121 (270)
.++++++|+|++++++||++||+|||++.. +.+..++++|++|.+++.+ .++..|.+|++.|||||+. ||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~-df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQV-DFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEE-ecccch
Confidence 378999999999999999999999999874 2245688999999987654 5578999999999999965 799999
Q ss_pred CCchHHHHHHHHHhhhc-CCceEEEEecCceeeChHHHHHHhhhc-CCCCceEEEEeecC-cceecCCCceeecCccccC
Q 024273 122 EELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRS-RGQESAYIGCMKSG-DVVTEEGRQWYEPEWWKFG 198 (270)
Q Consensus 122 ~nlt~Ktl~~~~w~~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~~-~~~~~~y~G~~~~~-~~ir~~~~kw~~~~~~~~~ 198 (270)
.|+|+||+++++|+..+ ++++|++|+|||+|||+++|+.+|.+. .+.+.+|+|.+..+ +|+|++.+|||+|+ ..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~--~~y 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPE--SEY 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCH--HHC
Confidence 99999999999999998 889999999999999999999999998 77889999999776 99999999999999 588
Q ss_pred CCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcC-CCeEecCCCcc
Q 024273 199 DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV-RATYKDDNRFC 257 (270)
Q Consensus 199 ~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~-~v~~~~~~~f~ 257 (270)
+.+.|||||+|+||++|+++|+.|++++.+.+.+++|||++|+|++.. ++++++.+.|.
T Consensus 246 ~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~ 305 (349)
T KOG2287|consen 246 PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFF 305 (349)
T ss_pred CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCcccc
Confidence 999999999999999999999999999999999999999999999987 99999988743
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=5.1e-50 Score=390.45 Aligned_cols=218 Identities=20% Similarity=0.360 Sum_probs=190.9
Q ss_pred ceeEEEEEEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccC
Q 024273 42 KLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQ 121 (270)
Q Consensus 42 k~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy 121 (270)
+++|+|+|+|+|+|++||++||+||++... ....++.++|++|.+.+ +.++..|.+|+++|||||+. ||.|+|
T Consensus 384 ~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~----~~~~~v~~rFvVG~s~n--~~l~~~L~~Ea~~ygDIIq~-dF~DsY 456 (636)
T PLN03133 384 PLDLFIGVFSTANNFKRRMAVRRTWMQYDA----VRSGAVAVRFFVGLHKN--QMVNEELWNEARTYGDIQLM-PFVDYY 456 (636)
T ss_pred ceEEEEEEeCCcccHHHHHHHHHhhccccc----cCCCceEEEEEEecCCc--HHHHHHHHHHHHHcCCeEEE-eeechh
Confidence 489999999999999999999999999653 12345889999999764 35788999999999999965 799999
Q ss_pred CCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecC-cceecCCCceeecCccccCCC
Q 024273 122 EELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSG-DVVTEEGRQWYEPEWWKFGDG 200 (270)
Q Consensus 122 ~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~-~~ir~~~~kw~~~~~~~~~~~ 200 (270)
+|||+||++++.|+..+++++|++|+|||+|||+++|+++|+.....+++|+|++..+ +|+|++.+|||+|. ..|+.
T Consensus 457 ~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~--~eyp~ 534 (636)
T PLN03133 457 SLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISP--EEWPE 534 (636)
T ss_pred hhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCH--HHCCC
Confidence 9999999999999987789999999999999999999999987666667999999765 89999999999998 57799
Q ss_pred CCCCCCCcCCeeeeCHHHHHHHHHhc--cccCCCCCChhhHHHHhh-----cCCCeEecCCCcccCCCCCCCccc
Q 024273 201 KSYFRHAAGSIFVLSRNLAQYININS--ASLKTYAHDDTSVGSWMM-----GVRATYKDDNRFCCSSINRDKVCS 268 (270)
Q Consensus 201 ~~yP~y~~G~~YilS~dlv~~i~~~~--~~~~~~~~EDv~vG~~l~-----~~~v~~~~~~~f~~~~~~~~~~~~ 268 (270)
..|||||+|+||+||+++|+.|+..+ ..++.+++|||++|+|++ ++.+++.++.+|+...+....+|+
T Consensus 535 ~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~~C~~~~i~~ 609 (636)
T PLN03133 535 ETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNEGCKDGYVVA 609 (636)
T ss_pred CCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCCcCCCCeEEE
Confidence 99999999999999999999998754 578999999999999985 455678899999888776555543
No 4
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-50 Score=347.54 Aligned_cols=228 Identities=54% Similarity=0.962 Sum_probs=212.3
Q ss_pred CCceeEEEEEEcCCCChhhHHHHHHhhccCCccccccc-cCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCc
Q 024273 40 GKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLE-ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHE 118 (270)
Q Consensus 40 ~~k~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~-~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~ 118 (270)
.+|.+++|+|.|++++.+||+.+|+||+.....+++++ ..|+.++|++|. .+.+.+.+.+|++|.++|+|.+.+++.+
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~-~~~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGT-ATLGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEecc-CCccHHHHHHHHHHHHhcCCeEeechhH
Confidence 78999999999999999999999999999977778887 788999999999 3556678999999999999999997799
Q ss_pred ccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccC
Q 024273 119 EAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFG 198 (270)
Q Consensus 119 Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~ 198 (270)
|+|.+|+.||+++|.++..+++++|++|+|||+|||+..|...|.+.+.++++||||+..|+++.++.+|||+|+| +|.
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~EpeW-kfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPEW-KFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChhh-hcC
Confidence 9999999999999999999999999999999999999999999999888889999999999999999999999997 787
Q ss_pred CCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCeEecCCCcccCCC--CCCCcccc
Q 024273 199 DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDNRFCCSSI--NRDKVCSM 269 (270)
Q Consensus 199 ~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~~~~~~~f~~~~~--~~~~~~~~ 269 (270)
....|++|+.|++|+||++++..|..+...++.+..|||.+|-|+.+++|+++|++|+||+.. -..++|+|
T Consensus 166 ~~g~YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~~~~~~~~~~~ 238 (274)
T KOG2288|consen 166 DNGNYFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTPKALAGMVCAA 238 (274)
T ss_pred cccccchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccchhhhccceeee
Confidence 644499999999999999999999999999999999999999999999999999999999999 46677765
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=4.1e-49 Score=338.53 Aligned_cols=191 Identities=22% Similarity=0.331 Sum_probs=169.6
Q ss_pred hhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhh
Q 024273 57 LNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAV 136 (270)
Q Consensus 57 ~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~ 136 (270)
+||++||+||++... ....+++++|++|.+++.+..+++.|.+|+++|+|||+. ||.|+|.|+|+||+++++|+.
T Consensus 1 ~rR~~IR~TW~~~~~----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~-d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQG-DFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEee-ecccccchhhHHHHHHHHHHH
Confidence 589999999999874 124678999999999755556778899999999999965 799999999999999999999
Q ss_pred hc-CCceEEEEecCceeeChHHHHHHhhhc--CC-CCceEEEEeecCcceecCCCceeecCccccCCCCCCCCCCcCCee
Q 024273 137 QI-WDAEFYVKVDDNIDLDLEGLIGLLDRS--RG-QESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIF 212 (270)
Q Consensus 137 ~~-~~~~fvlK~DDD~fvn~~~L~~~L~~~--~~-~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~Y 212 (270)
++ ++++|++|+|||+|||+++|.++|... .. ...+|.++...++|+|++.+|||+|+ ..|+.+.|||||+|+||
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~--~~y~~~~yP~y~~G~~y 153 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSE--EEYPDDYYPPYCSGGGY 153 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeee--eecccccCCCcCCCCeE
Confidence 99 669999999999999999999999986 23 33455555555689999999999998 57899999999999999
Q ss_pred eeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCeEecCC
Q 024273 213 VLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDN 254 (270)
Q Consensus 213 ilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~~~~~~ 254 (270)
+||+++|+.|+.++..++.+++|||++|+|+.+++++++|+|
T Consensus 154 vls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 154 VLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 999999999999999899999999999999999999999975
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=2.6e-34 Score=263.28 Aligned_cols=191 Identities=19% Similarity=0.242 Sum_probs=155.3
Q ss_pred CCCceeEEEEEEcCCCC--hhhHHHHHHhhccCCc-cccccccCC-eEEEEEeeecCCCCchhhhhhHHhhhhCCCeeee
Q 024273 39 SGKKLLAVIGVYTGFGS--HLNRNVYRGSWMPKGD-ALKKLEERG-VVIRFVIGRSANRGDSLDRKIDAENRETKDFLIL 114 (270)
Q Consensus 39 ~~~k~~lli~V~S~~~~--~~rR~aIR~TW~~~~~-~~~~l~~~~-v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l 114 (270)
+.++..++++|+|..++ +.||+++|+||.+... +.+.++..| +.++|++|.+++.+-+.+.+|.+|+++|||||++
T Consensus 76 ~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVil 155 (382)
T PTZ00210 76 KAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITL 155 (382)
T ss_pred ccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEE
Confidence 34567999999999998 8899999999999764 222233333 6678999999887767899999999999999977
Q ss_pred CCC------------------cccCCCchHHHHHHHHHhhhc-CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEE
Q 024273 115 EGH------------------EEAQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGC 175 (270)
Q Consensus 115 ~d~------------------~Dsy~nlt~Ktl~~~~w~~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~ 175 (270)
+ | .|++.|+|+||+++++|+... |+++|++|+|||+|||++++++.|+.. ++..+|+|.
T Consensus 156 p-f~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G~ 233 (382)
T PTZ00210 156 P-TNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMGR 233 (382)
T ss_pred e-cccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEEe
Confidence 4 9 777889999999999999998 799999999999999999999999764 566799998
Q ss_pred eecC-cceecCCCceeecCccccCCCCCCCCCCcCCeeeeCHHHHHHHHHhccc--c---------------CCCCCChh
Q 024273 176 MKSG-DVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYININSAS--L---------------KTYAHDDT 237 (270)
Q Consensus 176 ~~~~-~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~YilS~dlv~~i~~~~~~--~---------------~~~~~EDv 237 (270)
+... .|.| ..+||||+|+||+||+|+|+.|+...+. + -.+..||+
T Consensus 234 v~~~~~p~R-----------------d~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~EDi 296 (382)
T PTZ00210 234 YNYYNRIWR-----------------RNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYEDV 296 (382)
T ss_pred eCCCCcccc-----------------CCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCchHH
Confidence 7532 2322 1369999999999999999999765332 1 13589999
Q ss_pred hHHHHhh-cCCC
Q 024273 238 SVGSWMM-GVRA 248 (270)
Q Consensus 238 ~vG~~l~-~~~v 248 (270)
++|.++. +++.
T Consensus 297 MvG~vLr~~~k~ 308 (382)
T PTZ00210 297 MVGMILREKVVY 308 (382)
T ss_pred HHHHHHHHhcCc
Confidence 9999994 4443
No 7
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.84 E-value=7.2e-21 Score=169.83 Aligned_cols=193 Identities=18% Similarity=0.204 Sum_probs=100.4
Q ss_pred eeEEEEEEcCCCChh-hHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccC
Q 024273 43 LLAVIGVYTGFGSHL-NRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQ 121 (270)
Q Consensus 43 ~~lli~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy 121 (270)
-.|+|+|+|++++.+ |-.+|++||++... ...|+..... +..+..+ .-.+++ .++....+
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~----------~~~~ifsd~~------d~~l~~~--~~~~l~-~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCN----------KQTFIFSDAE------DPSLPTV--TGVHLV-NPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSG----------GGEEEEESS--------HHHHHH--HGGGEE-E-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcC----------CceEEecCcc------ccccccc--cccccc-cCCCcchh
Confidence 368899999998765 55899999999875 1244322111 2344443 223444 55555555
Q ss_pred CCchHHHHHHHHHhhhc-CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCC-ceeecCccccCC
Q 024273 122 EELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGR-QWYEPEWWKFGD 199 (270)
Q Consensus 122 ~nlt~Ktl~~~~w~~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~-kw~~~~~~~~~~ 199 (270)
...+++.++.+.+-... ++++|++++|||+||++++|.++|..+++.+++|+|......++..... .... .
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~-------~ 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNK-------S 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeeccccccc-------c
Confidence 54455555444443323 6889999999999999999999999999999999999865444322100 0000 0
Q ss_pred CCCCCCCC-cCCeeeeCHHHHHHHHH--h-ccccCC----CCCChhhHHHHhhc-CCCeEecCCCcccCCC
Q 024273 200 GKSYFRHA-AGSIFVLSRNLAQYINI--N-SASLKT----YAHDDTSVGSWMMG-VRATYKDDNRFCCSSI 261 (270)
Q Consensus 200 ~~~yP~y~-~G~~YilS~dlv~~i~~--~-~~~~~~----~~~EDv~vG~~l~~-~~v~~~~~~~f~~~~~ 261 (270)
...-..|+ +|+||+||+.++++|.. . ...... -..||+.+|.|+.. +||+.+|.+.|.....
T Consensus 140 ~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp ------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 11222455 45799999999999943 2 222222 24899999999998 9999999999976554
No 8
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.68 E-value=2.4e-16 Score=147.06 Aligned_cols=171 Identities=16% Similarity=0.212 Sum_probs=131.1
Q ss_pred CCceeEEEEEEcCCCChh-hHHHHHHhhccCCccccccccCCeEEEEEe---eecCCCCchhhhhhHHhhhhCCCeeeeC
Q 024273 40 GKKLLAVIGVYTGFGSHL-NRNVYRGSWMPKGDALKKLEERGVVIRFVI---GRSANRGDSLDRKIDAENRETKDFLILE 115 (270)
Q Consensus 40 ~~k~~lli~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~v~v~Fvv---G~~~~~~~~~~~~l~~E~~~~~DIi~l~ 115 (270)
.++..|++.|+|++.+.. |-+.+-+||++... +..|+. ++.. ..+.=|. .
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~----------~~~f~s~~~s~~~--------------~~f~~v~-~- 141 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCD----------KGIFFSPTLSKDD--------------SRFPTVY-Y- 141 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccC----------cceecCccCCCCC--------------CcCceee-c-
Confidence 445899999999998766 44799999999875 235554 3221 2333332 5
Q ss_pred CCcccCCCchHHHHHHHHHhhhc--CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeecC
Q 024273 116 GHEEAQEELPKKAKFFFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPE 193 (270)
Q Consensus 116 d~~Dsy~nlt~Ktl~~~~w~~~~--~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~ 193 (270)
+..|+|+++..||..+++++.++ .+++|++|+|||||+.++||..+|..+++.+++|+|+.....
T Consensus 142 ~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~~~~------------- 208 (364)
T KOG2246|consen 142 NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRSKSY------------- 208 (364)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEeccccccc-------------
Confidence 58999999999999999999866 889999999999999999999999999999999999884110
Q ss_pred ccccCCCCCCCCCC-cCCeeeeCHHHHHHHHHh----ccccCC-C--CCChhhHHHHhhcCCCeEecCCCcc
Q 024273 194 WWKFGDGKSYFRHA-AGSIFVLSRNLAQYININ----SASLKT-Y--AHDDTSVGSWMMGVRATYKDDNRFC 257 (270)
Q Consensus 194 ~~~~~~~~~yP~y~-~G~~YilS~dlv~~i~~~----~~~~~~-~--~~EDv~vG~~l~~~~v~~~~~~~f~ 257 (270)
-... |. +|+||++|+.+.+.++.. ...++. . ..||.-||.|++.+||...|.+..+
T Consensus 209 -----~~~~---y~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~d~d 272 (364)
T KOG2246|consen 209 -----FQNG---YSSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDERDED 272 (364)
T ss_pred -----cccc---cccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCchhhh
Confidence 0112 33 567999999999887543 222322 3 4999999999999999988875444
No 9
>PLN03153 hypothetical protein; Provisional
Probab=99.28 E-value=8.3e-11 Score=112.65 Aligned_cols=182 Identities=14% Similarity=0.166 Sum_probs=114.7
Q ss_pred eeEEEEEEcCCCChh-hHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCccc-
Q 024273 43 LLAVIGVYTGFGSHL-NRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEA- 120 (270)
Q Consensus 43 ~~lli~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Ds- 120 (270)
-.|+++|.++.+..+ |+..|+.+|....- + ..+|+.....+.. .+..+ --|. +. .|+
T Consensus 122 ~hIvF~I~~s~~~w~~R~~yik~wW~p~~~-------r--g~v~ld~~~~~~~--~~~~~-------P~i~-is--~d~s 180 (537)
T PLN03153 122 NHIMFGIAGSSQLWKRRKELVRLWWRPNQM-------R--GHVWLEEQVSPEE--GDDSL-------PPIM-VS--EDTS 180 (537)
T ss_pred ccEEEEEEEchhhhhhhhhhhhhhcCcccc-------e--eEEEecccCCCCC--CcCCC-------CCEE-eC--CCcc
Confidence 368888999888764 66899999986432 1 2456554432110 01111 1122 21 111
Q ss_pred ---CCC---chH--HHHHHHHHh-hhc-CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCcee
Q 024273 121 ---QEE---LPK--KAKFFFSTA-VQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWY 190 (270)
Q Consensus 121 ---y~n---lt~--Ktl~~~~w~-~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~ 190 (270)
|.| ... -+..+...+ ... ++++|++++|||+|+.+++|...|..++++++.|+|........
T Consensus 181 ~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~~q-------- 252 (537)
T PLN03153 181 RFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESHSA-------- 252 (537)
T ss_pred cccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccccc--------
Confidence 222 112 111122222 232 89999999999999999999999999999999999977421100
Q ss_pred ecCccccCCCCCCCCCC-cCCeeeeCHHHHHHHHHhcccc----CCCCCChhhHHHHhhcCCCeEecCCCcccCCC
Q 024273 191 EPEWWKFGDGKSYFRHA-AGSIFVLSRNLAQYININSASL----KTYAHDDTSVGSWMMGVRATYKDDNRFCCSSI 261 (270)
Q Consensus 191 ~~~~~~~~~~~~yP~y~-~G~~YilS~dlv~~i~~~~~~~----~~~~~EDv~vG~~l~~~~v~~~~~~~f~~~~~ 261 (270)
. .++ .| .|+ +|+||+||+.+++.|......+ +...-+|..+|.|+..+||...+.++|..-..
T Consensus 253 n----~~f---~~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~D~ 320 (537)
T PLN03153 253 N----SYF---SH-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQWDI 320 (537)
T ss_pred c----ccc---cc-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccccc
Confidence 0 000 01 133 6789999999999887642212 22356899999999999999999998875443
No 10
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.0023 Score=61.67 Aligned_cols=94 Identities=15% Similarity=0.198 Sum_probs=69.5
Q ss_pred HHHHHHHhhhc--CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccCCCCCCCC
Q 024273 128 AKFFFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFR 205 (270)
Q Consensus 128 tl~~~~w~~~~--~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~ 205 (270)
..+.+.++.++ .+++|++-+-|++|||...|+..+.....+.++|+|.-..+ ....
T Consensus 83 ~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~~~-------------------gs~r--- 140 (681)
T KOG3708|consen 83 HSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEAED-------------------GSGR--- 140 (681)
T ss_pred HHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhhhC-------------------ccCc---
Confidence 34455666665 78999999999999999999999999888889999833110 1112
Q ss_pred CCcC-CeeeeCHHHHHHHHHhccccC---CCCCChhhHHHHhh
Q 024273 206 HAAG-SIFVLSRNLAQYININSASLK---TYAHDDTSVGSWMM 244 (270)
Q Consensus 206 y~~G-~~YilS~dlv~~i~~~~~~~~---~~~~EDv~vG~~l~ 244 (270)
|.+ .||++|+.++..|-.+-.-+. .-.-+|+.+|.|+.
T Consensus 141 -C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~ 182 (681)
T KOG3708|consen 141 -CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQ 182 (681)
T ss_pred -cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHH
Confidence 764 699999999999865432222 23456799999985
No 11
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.43 E-value=0.063 Score=45.58 Aligned_cols=99 Identities=14% Similarity=0.065 Sum_probs=56.1
Q ss_pred EEEEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeC----CCcccCC
Q 024273 47 IGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILE----GHEEAQE 122 (270)
Q Consensus 47 i~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~----d~~Dsy~ 122 (270)
|.|.|-+...+||+.+.+...+. ++.+.|+-|-.+... .. .+....++.-.... .+.-+.-
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~----------~~~~e~~~Avdg~~l---~~--~~~~~~~~~~~~~~~~~~~lt~gEi 68 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL----------GINFEFFDAVDGRDL---SE--DELFRRYDPELFKKRYGRPLTPGEI 68 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc----------CCceEEEEeeccccc---ch--HHHHHHhhhhhhhccccccCCcceE
Confidence 45677888899999998876543 456677777543221 11 11111121111010 0111111
Q ss_pred CchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHh
Q 024273 123 ELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLL 162 (270)
Q Consensus 123 nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L 162 (270)
.=.+-.+..++-+.+. +.++.+-.-||+.++.+ +.+.|
T Consensus 69 GC~lSH~~~w~~~v~~-~~~~~lIlEDDv~~~~~-f~~~l 106 (200)
T PF01755_consen 69 GCALSHIKAWQRIVDS-GLEYALILEDDVIFDPD-FKEFL 106 (200)
T ss_pred eehhhHHHHHHHHHHc-CCCeEEEEecccccccc-HHHHH
Confidence 2256667777777764 67899999999999854 33333
No 12
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=96.33 E-value=0.14 Score=43.74 Aligned_cols=186 Identities=12% Similarity=0.062 Sum_probs=82.7
Q ss_pred EEEEEEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCe--eeeCCCcccCC
Q 024273 45 AVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDF--LILEGHEEAQE 122 (270)
Q Consensus 45 lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DI--i~l~d~~Dsy~ 122 (270)
|.|+|++.-....-++.|+.--... ...+.++++...+.. +..+.+.+-.+.+... .++.. -.
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~--------~~~~~v~vvd~~~~~---~~~~~~~~~~~~~~~~~v~vi~~----~~ 67 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQD--------YPRLEVVVVDDGSDD---ETAEILRALAARYPRVRVRVIRR----PR 67 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSH--------HHTEEEEEEEE-SSS----GCTTHHHHHHTTGG-GEEEEE-------
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCC--------CCCeEEEEEECCCCh---HHHHHHHHHHHHcCCCceEEeec----CC
Confidence 5566666544344445555443221 123556665544322 2233455545566553 22221 12
Q ss_pred Cc--hHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhc-CCCCceEEEEeecCc--ceecCCCceeecCcc-c
Q 024273 123 EL--PKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS-RGQESAYIGCMKSGD--VVTEEGRQWYEPEWW-K 196 (270)
Q Consensus 123 nl--t~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~-~~~~~~y~G~~~~~~--~ir~~~~kw~~~~~~-~ 196 (270)
|. ..|.- ++.++.+....+|++.+|||+.+.++-|...+... .+.-....|...... ........++...+. .
T Consensus 68 ~~g~~~k~~-a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (228)
T PF13641_consen 68 NPGPGGKAR-ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLR 146 (228)
T ss_dssp -HHHHHHHH-HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTT
T ss_pred CCCcchHHH-HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhh
Confidence 22 23433 44666666669999999999999988888777665 333333334332211 000000001000000 0
Q ss_pred cCC-CCCCC-CCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 197 FGD-GKSYF-RHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 197 ~~~-~~~yP-~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
+.. ...+. .++.|++.++.+++++.+-.... ....||..++.-+...|.+
T Consensus 147 ~~~~~~~~~~~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 147 FRSGRRALGVAFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp S-TT-B----S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred hhhhhcccceeeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 000 01111 34679999999999998853222 4446999999988766655
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=96.08 E-value=0.12 Score=48.55 Aligned_cols=186 Identities=12% Similarity=0.081 Sum_probs=95.9
Q ss_pred eEEEEEEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCC--eeeeCCCcccC
Q 024273 44 LAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKD--FLILEGHEEAQ 121 (270)
Q Consensus 44 ~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~D--Ii~l~d~~Dsy 121 (270)
.+-|+|++.-+...-.+.++ +..++.. ..++++++...+.+. ..+.+++=.+.|.+ |..+.+ .+ -
T Consensus 42 ~VSViiP~~nee~~l~~~L~-Sl~~q~Y-------p~~EIivvdd~s~D~---t~~iv~~~~~~~p~~~i~~v~~-~~-~ 108 (373)
T TIGR03472 42 PVSVLKPLHGDEPELYENLA-SFCRQDY-------PGFQMLFGVQDPDDP---ALAVVRRLRADFPDADIDLVID-AR-R 108 (373)
T ss_pred CeEEEEECCCCChhHHHHHH-HHHhcCC-------CCeEEEEEeCCCCCc---HHHHHHHHHHhCCCCceEEEEC-CC-C
Confidence 35555554433333444554 3443331 346777766654332 12223222345665 422211 11 1
Q ss_pred CCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceee------cCcc
Q 024273 122 EELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE------PEWW 195 (270)
Q Consensus 122 ~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~------~~~~ 195 (270)
.....|.-+..+ +.+..+.+|++.+|+|+.+.++.|...+......+--.+++.....+ ..+ |.. ..+
T Consensus 109 ~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~---~~~-~~~~l~~~~~~~- 182 (373)
T TIGR03472 109 HGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRP---VPG-FWSRLGAMGINH- 182 (373)
T ss_pred CCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCC---CCC-HHHHHHHHHhhh-
Confidence 223357655544 34556799999999999999888888776653222112222211111 111 110 000
Q ss_pred ccCCC------CCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 196 KFGDG------KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 196 ~~~~~------~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
.+++. ..-+.+|.|.++++.+++.+.+--... ....-.||..+|.-+...|.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~~-~~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 183 NFLPSVMVARALGRARFCFGATMALRRATLEAIGGLAA-LAHHLADDYWLGELVRALGLR 241 (373)
T ss_pred hhhHHHHHHHhccCCccccChhhheeHHHHHHcCChHH-hcccchHHHHHHHHHHHcCCe
Confidence 01110 011345889999999999998743221 122235999999998776655
No 14
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=95.56 E-value=0.56 Score=44.26 Aligned_cols=155 Identities=16% Similarity=0.193 Sum_probs=81.0
Q ss_pred CeEEEEEeeecCCCCchhhhhhHHhh-hhCC---CeeeeCCCcccCCCchHHH---HHHHHHhhhc-CCceEEEEecCce
Q 024273 80 GVVIRFVIGRSANRGDSLDRKIDAEN-RETK---DFLILEGHEEAQEELPKKA---KFFFSTAVQI-WDAEFYVKVDDNI 151 (270)
Q Consensus 80 ~v~v~FvvG~~~~~~~~~~~~l~~E~-~~~~---DIi~l~d~~Dsy~nlt~Kt---l~~~~w~~~~-~~~~fvlK~DDD~ 151 (270)
..++++|...+.+. ..++.++. +.+. .+.++. ..+.-.+-..|. -.+++.+.+. ++.+|++.+|+|+
T Consensus 70 ~~eIIVVDd~StD~----T~~i~~~~~~~~~~~~~i~vi~-~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~ 144 (384)
T TIGR03469 70 KLHVILVDDHSTDG----TADIARAAARAYGRGDRLTVVS-GQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADI 144 (384)
T ss_pred ceEEEEEeCCCCCc----HHHHHHHHHHhcCCCCcEEEec-CCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCC
Confidence 35677776655432 22333332 2333 344342 222112233553 3355555444 4489999999999
Q ss_pred eeChHHHHHHhhhcCCCC-ceEEEEeecCcceecCCCcee---ec------------CccccCCCCCCCCCCcCCeeeeC
Q 024273 152 DLDLEGLIGLLDRSRGQE-SAYIGCMKSGDVVTEEGRQWY---EP------------EWWKFGDGKSYFRHAAGSIFVLS 215 (270)
Q Consensus 152 fvn~~~L~~~L~~~~~~~-~~y~G~~~~~~~ir~~~~kw~---~~------------~~~~~~~~~~yP~y~~G~~YilS 215 (270)
.+.++.|.+.+......+ .+..|.... + ..+-|. .+ .+ .........++.|++.+++
T Consensus 145 ~~~p~~l~~lv~~~~~~~~~~vs~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~G~~~lir 217 (384)
T TIGR03469 145 AHGPDNLARLVARARAEGLDLVSLMVRL----R-CESFWEKLLIPAFVFFFQKLYPFRW--VNDPRRRTAAAAGGCILIR 217 (384)
T ss_pred CCChhHHHHHHHHHHhCCCCEEEecccc----c-CCCHHHHHHHHHHHHHHHHhcchhh--hcCCCccceeecceEEEEE
Confidence 999888888876543222 222222210 0 011010 00 00 0001112234679999999
Q ss_pred HHHHHHHHHhccccCCCCCChhhHHHHhhcCC
Q 024273 216 RNLAQYININSASLKTYAHDDTSVGSWMMGVR 247 (270)
Q Consensus 216 ~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~ 247 (270)
+++.+.+--... ......||+.++.-+...|
T Consensus 218 r~~~~~vGGf~~-~~~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 218 REALERIGGIAA-IRGALIDDCTLAAAVKRSG 248 (384)
T ss_pred HHHHHHcCCHHH-HhhCcccHHHHHHHHHHcC
Confidence 999998832211 1122479999999887654
No 15
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=94.80 E-value=0.03 Score=47.17 Aligned_cols=126 Identities=14% Similarity=0.105 Sum_probs=75.3
Q ss_pred hHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCce--eecCccc----cC
Q 024273 125 PKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQW--YEPEWWK----FG 198 (270)
Q Consensus 125 t~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw--~~~~~~~----~~ 198 (270)
..|.-.....+....+.++++..|+|+.++++-|.+.+..+..++--.+.+.....+.+ +-| .+..+.. .+
T Consensus 16 N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~---~~~~~l~~~~~~~~~~~~ 92 (175)
T PF13506_consen 16 NPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPAR---GFWSRLEAAFFNFLPGVL 92 (175)
T ss_pred ChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCc---CHHHHHHHHHHhHHHHHH
Confidence 46766666654433679999999999999999988888765432222222222221111 111 0100000 00
Q ss_pred CCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCeEecCC
Q 024273 199 DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDDN 254 (270)
Q Consensus 199 ~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~~~~~~ 254 (270)
..-.-.++|.|+++++.+++++.+--- ..+...-.||..+|..+...|.+.+-.+
T Consensus 93 ~a~~~~~~~~G~~m~~rr~~L~~~GG~-~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 93 QALGGAPFAWGGSMAFRREALEEIGGF-EALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred HHhcCCCceecceeeeEHHHHHHcccH-HHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 001235689999999999999987211 1122355899999999988777754443
No 16
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.69 E-value=2.2 Score=35.69 Aligned_cols=135 Identities=16% Similarity=0.129 Sum_probs=77.7
Q ss_pred CeEEEEEeeecCCCCchhhhhhHHhhhhCC--CeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHH
Q 024273 80 GVVIRFVIGRSANRGDSLDRKIDAENRETK--DFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 157 (270)
Q Consensus 80 ~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~--DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~ 157 (270)
++++++|...+.+. ..+.+++-.+.+. ++.++..-.. .....|.-. +..+.+..+.+|++..|+|+.+.++.
T Consensus 30 ~~eiivVdd~s~d~---t~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~~~~-~n~g~~~a~~d~i~~~D~D~~~~~~~ 103 (196)
T cd02520 30 KYEILFCVQDEDDP---AIPVVRKLIAKYPNVDARLLIGGEK--VGINPKVNN-LIKGYEEARYDILVISDSDISVPPDY 103 (196)
T ss_pred CeEEEEEeCCCcch---HHHHHHHHHHHCCCCcEEEEecCCc--CCCCHhHHH-HHHHHHhCCCCEEEEECCCceEChhH
Confidence 36777777665432 2233444444554 3322211111 112344433 34445556789999999999998888
Q ss_pred HHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccCCCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChh
Q 024273 158 LIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDT 237 (270)
Q Consensus 158 L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv 237 (270)
|...+...... . +|.+. +.++.|++.++.+++.+.+-.... ......||.
T Consensus 104 l~~l~~~~~~~-~--~~~v~--------------------------~~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~ 153 (196)
T cd02520 104 LRRMVAPLMDP-G--VGLVT--------------------------CLCAFGKSMALRREVLDAIGGFEA-FADYLAEDY 153 (196)
T ss_pred HHHHHHHhhCC-C--CCeEE--------------------------eecccCceeeeEHHHHHhccChHH-HhHHHHHHH
Confidence 87777653211 1 11111 014678999999999998743221 222346999
Q ss_pred hHHHHhhcCCCeE
Q 024273 238 SVGSWMMGVRATY 250 (270)
Q Consensus 238 ~vG~~l~~~~v~~ 250 (270)
.++.-+...|.+.
T Consensus 154 ~l~~rl~~~G~~i 166 (196)
T cd02520 154 FLGKLIWRLGYRV 166 (196)
T ss_pred HHHHHHHHcCCeE
Confidence 9998887666553
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=94.64 E-value=1.7 Score=37.16 Aligned_cols=157 Identities=8% Similarity=0.003 Sum_probs=79.0
Q ss_pred CeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHH
Q 024273 80 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 159 (270)
Q Consensus 80 ~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~ 159 (270)
.++++.+.+.+.+. ....++...+++..+.++. -.. .... .++....+..+.+|++.+|+|..+.++.|.
T Consensus 31 ~~evivvd~~s~d~---~~~~~~~~~~~~~~v~~i~-~~~--~~~~----~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 31 LIEIIVVDGGSTDG---TREIVQEYAAKDPRIRLID-NPK--RIQS----AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred ccEEEEEeCCCCcc---HHHHHHHHHhcCCeEEEEe-CCC--CCch----HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 45667666554332 2334444444443344332 111 1111 345555555578999999999999988888
Q ss_pred HHhhhcCCCC-ceEEEEeecC--cceec----CCCceeecCccccCCCCCC--CCCCcCCeeeeCHHHHHHHHHhccccC
Q 024273 160 GLLDRSRGQE-SAYIGCMKSG--DVVTE----EGRQWYEPEWWKFGDGKSY--FRHAAGSIFVLSRNLAQYININSASLK 230 (270)
Q Consensus 160 ~~L~~~~~~~-~~y~G~~~~~--~~ir~----~~~kw~~~~~~~~~~~~~y--P~y~~G~~YilS~dlv~~i~~~~~~~~ 230 (270)
..+......+ ....|..... .+... ....++.... ..+..... -.++.|++.++++++.+.+......
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGG-SAYRGGAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCC-ccccccccccccccccccceEEHHHHHHhCCCCcc--
Confidence 7775543222 3333433211 11000 0000000000 00000000 1145677888999998887432222
Q ss_pred CCCCChhhHHHHhhcCCCe
Q 024273 231 TYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 231 ~~~~EDv~vG~~l~~~~v~ 249 (270)
....||..++.-+...|.+
T Consensus 178 ~~~~eD~~l~~r~~~~G~~ 196 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYK 196 (249)
T ss_pred cCccchhHHHHHHHHcCcE
Confidence 2347999988777665554
No 18
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.19 E-value=2.2 Score=33.63 Aligned_cols=80 Identities=10% Similarity=0.148 Sum_probs=52.8
Q ss_pred CCceEEEEecCceeeChHHHHHHhhhcCCCCce-EEEEeecCcceecCCCceeecCccccCCCCCCCCCCcCCeeeeCHH
Q 024273 139 WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESA-YIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRN 217 (270)
Q Consensus 139 ~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~-y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~YilS~d 217 (270)
.+.+|++..|||..+..+.+...+......+.. .++.. +.|++.+++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~ 122 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------VSGAFLLVRRE 122 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------CceeeEeeeHH
Confidence 368999999999999988887777643222211 11100 57889999999
Q ss_pred HHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 218 LAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 218 lv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
+++.+-........ ..||..+..-+...|.+
T Consensus 123 ~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~ 153 (166)
T cd04186 123 VFEEVGGFDEDFFL-YYEDVDLCLRARLAGYR 153 (166)
T ss_pred HHHHcCCCChhhhc-cccHHHHHHHHHHcCCe
Confidence 99876432222222 67999887766655544
No 19
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=93.42 E-value=1.2 Score=35.22 Aligned_cols=113 Identities=14% Similarity=0.069 Sum_probs=69.0
Q ss_pred EEEEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhh-----hCCCeeeeCCCcccC
Q 024273 47 IGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENR-----ETKDFLILEGHEEAQ 121 (270)
Q Consensus 47 i~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~-----~~~DIi~l~d~~Dsy 121 (270)
|.|.+-+...+||+.+++.... .++.+.|+-|-.+.... ...+..... .++--+ .-+.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~----------~~~~~~~~~Avd~~~~~--~~~~~~~~~~~~~~~~~~~l-----~~gE 64 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAA----------LGLDFEFFDAVDGKDLS--EEELAALYDALFLPRYGRPL-----TPGE 64 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHH----------cCCCeEEEeccccccCC--HHHHHHHhHHHhhhhcCCCC-----Chhh
Confidence 4567788889999999985443 35566777665432111 111221111 111111 1111
Q ss_pred CCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccCCCC
Q 024273 122 EELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGK 201 (270)
Q Consensus 122 ~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~ 201 (270)
-.-.+..+..++-+.+. +.++.+-..||+.+..+
T Consensus 65 iGC~lSH~~~w~~~~~~-~~~~alIlEDDv~~~~~--------------------------------------------- 98 (128)
T cd06532 65 IGCFLSHYKLWQKIVES-NLEYALILEDDAILDPD--------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHHHHHHHc-CCCeEEEEccCcEECCC---------------------------------------------
Confidence 22245556666666663 56799999999999877
Q ss_pred CCCCCCcCCeeeeCHHHHHHHHHhccc
Q 024273 202 SYFRHAAGSIFVLSRNLAQYININSAS 228 (270)
Q Consensus 202 ~yP~y~~G~~YilS~dlv~~i~~~~~~ 228 (270)
+..||++|+..+++++.....
T Consensus 99 ------~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 ------GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred ------CceEEEeCHHHHHHHHHhCCC
Confidence 345899999999999886653
No 20
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=92.99 E-value=5.7 Score=35.68 Aligned_cols=114 Identities=11% Similarity=0.165 Sum_probs=60.5
Q ss_pred HHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCc-eEEEEeec--Cccee--cCCC------ceee-cCcccc--
Q 024273 132 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES-AYIGCMKS--GDVVT--EEGR------QWYE-PEWWKF-- 197 (270)
Q Consensus 132 ~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~-~y~G~~~~--~~~ir--~~~~------kw~~-~~~~~~-- 197 (270)
.....+....+|++..|+|+.+..+-|...+......+. +..+.+.. +...+ .... .|.. ..|...
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 334444456899999999999987777777665422222 22222210 00000 0000 0100 000000
Q ss_pred -------CCCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhc
Q 024273 198 -------GDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMG 245 (270)
Q Consensus 198 -------~~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~ 245 (270)
.+.....++++|++.++++++.+.+-.-...+.....||+-+..=+..
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~ 209 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQ 209 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHH
Confidence 001123456789999999999999854444444455799887664433
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=92.07 E-value=6.6 Score=33.13 Aligned_cols=123 Identities=11% Similarity=-0.040 Sum_probs=66.6
Q ss_pred HHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCce--EEEEeec--Ccce----ecCC--CceeecCccccCCCCC
Q 024273 133 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESA--YIGCMKS--GDVV----TEEG--RQWYEPEWWKFGDGKS 202 (270)
Q Consensus 133 ~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~--y~G~~~~--~~~i----r~~~--~kw~~~~~~~~~~~~~ 202 (270)
..+.+..+.+|++.+|+|.++.++.|...+......+.+ ..|.... .... +... ...+.... .......
T Consensus 77 n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 155 (234)
T cd06421 77 NNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVI-QPGRDRW 155 (234)
T ss_pred HHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHH-HHHHhhc
Confidence 334444478999999999999988888877765332222 2221110 0000 0000 00000000 0000001
Q ss_pred CCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe--EecCCCcccC
Q 024273 203 YFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT--YKDDNRFCCS 259 (270)
Q Consensus 203 yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~--~~~~~~f~~~ 259 (270)
...++.|++.++++++++.+..-. .....||..++.-+...|.+ .++.....+.
T Consensus 156 ~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 156 GAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLAAGL 211 (234)
T ss_pred CCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCcccccc
Confidence 245678999999999999874322 23457999999887665544 5555544443
No 22
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=91.85 E-value=1.7 Score=34.09 Aligned_cols=92 Identities=15% Similarity=0.088 Sum_probs=46.3
Q ss_pred HHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCC-CCceEEEEeec-Cc---ceecCCC--ceee-cCccccCCCCC
Q 024273 131 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG-QESAYIGCMKS-GD---VVTEEGR--QWYE-PEWWKFGDGKS 202 (270)
Q Consensus 131 ~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~-~~~~y~G~~~~-~~---~ir~~~~--kw~~-~~~~~~~~~~~ 202 (270)
++..+.++-..+|++.+|||.++..+.|...+..... ...+.+|.... .. ....... .+.. ...........
T Consensus 69 ~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (169)
T PF00535_consen 69 ARNRGIKHAKGEYILFLDDDDIISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFW 148 (169)
T ss_dssp HHHHHHHH--SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHST
T ss_pred cccccccccceeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcC
Confidence 3334444445569999999999988766666555432 33455554431 11 1111111 1111 00000011112
Q ss_pred CCCCCcCCeeeeCHHHHHHH
Q 024273 203 YFRHAAGSIFVLSRNLAQYI 222 (270)
Q Consensus 203 yP~y~~G~~YilS~dlv~~i 222 (270)
-.+++.|++.++++++.+++
T Consensus 149 ~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 149 KISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp TSSEESSSCEEEEEHHHHHC
T ss_pred CcccccccEEEEEHHHHHhh
Confidence 34467889999999998764
No 23
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.51 E-value=4.8 Score=33.76 Aligned_cols=111 Identities=11% Similarity=0.000 Sum_probs=60.1
Q ss_pred HHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcC-CCCceEEEEeecCcceecCCCceeecCcc------ccCCCCCC
Q 024273 131 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKSGDVVTEEGRQWYEPEWW------KFGDGKSY 203 (270)
Q Consensus 131 ~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~-~~~~~y~G~~~~~~~ir~~~~kw~~~~~~------~~~~~~~y 203 (270)
++.+..+....+|++.+|+|..+.++.|...+.... .....+.|......+. .....+....+. .......+
T Consensus 73 a~n~g~~~~~~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (229)
T cd04192 73 ALTTAIKAAKGDWIVTTDADCVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGK-SLLAKFQRLDWLSLLGLIAGSFGLGK 151 (229)
T ss_pred HHHHHHHHhcCCEEEEECCCcccCHHHHHHHHHHhhcCCCcEEeeeeeecCCc-cHHHHHHHHHHHHHHHHHhhHHHhcC
Confidence 345555566789999999999999888877776432 2333454443211110 000000000000 00011234
Q ss_pred CCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHh
Q 024273 204 FRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWM 243 (270)
Q Consensus 204 P~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l 243 (270)
|..+.|+++++++++.+.+--.... .....||..++.-+
T Consensus 152 ~~~~~g~~~~~rr~~~~~~ggf~~~-~~~~~eD~~~~~~~ 190 (229)
T cd04192 152 PFMCNGANMAYRKEAFFEVGGFEGN-DHIASGDDELLLAK 190 (229)
T ss_pred ccccccceEEEEHHHHHHhcCCccc-cccccCCHHHHHHH
Confidence 5567799999999999987543222 22346776665533
No 24
>PRK11204 N-glycosyltransferase; Provisional
Probab=91.29 E-value=8.5 Score=36.35 Aligned_cols=140 Identities=11% Similarity=0.107 Sum_probs=74.3
Q ss_pred hhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEee
Q 024273 98 DRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMK 177 (270)
Q Consensus 98 ~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~ 177 (270)
.+.+++..+++..+..+. ..+ |. .|. .+++.+.+..+.+|++..|+|+.+..+.|...++.....++ +|.+.
T Consensus 98 ~~~l~~~~~~~~~v~~i~-~~~---n~-Gka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~--v~~v~ 169 (420)
T PRK11204 98 GEILDRLAAQIPRLRVIH-LAE---NQ-GKA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPR--VGAVT 169 (420)
T ss_pred HHHHHHHHHhCCcEEEEE-cCC---CC-CHH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCC--eEEEE
Confidence 334444455566565442 222 32 243 33555555667899999999999999888888776522222 22222
Q ss_pred cCcceecCCCceee----cCccccCC-----CC--CCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcC
Q 024273 178 SGDVVTEEGRQWYE----PEWWKFGD-----GK--SYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV 246 (270)
Q Consensus 178 ~~~~ir~~~~kw~~----~~~~~~~~-----~~--~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~ 246 (270)
..+.+.+..+ +.. .++..... .. ..+..++|.+.++.+++++.+-.-. +....||+.++.-+...
T Consensus 170 g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~~ 245 (420)
T PRK11204 170 GNPRIRNRST-LLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQLR 245 (420)
T ss_pred CCceeccchh-HHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHHc
Confidence 1111222111 100 00000000 00 1112347888999999998863222 12347999999887665
Q ss_pred CCe
Q 024273 247 RAT 249 (270)
Q Consensus 247 ~v~ 249 (270)
|.+
T Consensus 246 G~~ 248 (420)
T PRK11204 246 GWD 248 (420)
T ss_pred CCe
Confidence 544
No 25
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=91.08 E-value=9.2 Score=32.86 Aligned_cols=119 Identities=20% Similarity=0.192 Sum_probs=60.2
Q ss_pred HHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCC-CCceEEEEeecCccee-cCCCc--eeecCcc-ccCCCCCCCCC
Q 024273 132 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG-QESAYIGCMKSGDVVT-EEGRQ--WYEPEWW-KFGDGKSYFRH 206 (270)
Q Consensus 132 ~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~-~~~~y~G~~~~~~~ir-~~~~k--w~~~~~~-~~~~~~~yP~y 206 (270)
+....+..+.+|++.+|+|+.+..+-|.+.+..... .-.+..|....-.+.. ..... |...... .+......+..
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTVG 180 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCeee
Confidence 444445545699999999999997777777766532 2233334332111100 00000 0000000 00000112334
Q ss_pred CcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe--EecCCCc
Q 024273 207 AAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT--YKDDNRF 256 (270)
Q Consensus 207 ~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~--~~~~~~f 256 (270)
+.|+++.+.+++.+ ........||..++.-+...|.+ ..+....
T Consensus 181 ~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~ 226 (251)
T cd06439 181 ANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDAVA 226 (251)
T ss_pred ecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEeccccEE
Confidence 66777777777666 11122347999998887766544 4444433
No 26
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.58 E-value=8.8 Score=31.74 Aligned_cols=117 Identities=11% Similarity=0.059 Sum_probs=62.6
Q ss_pred hhcCCceEEEEecCceeeChHHHHHHhhh-cC-CCCceEEEEeec--C-cceecCCCceeecCcc---ccCCCCCCCCCC
Q 024273 136 VQIWDAEFYVKVDDNIDLDLEGLIGLLDR-SR-GQESAYIGCMKS--G-DVVTEEGRQWYEPEWW---KFGDGKSYFRHA 207 (270)
Q Consensus 136 ~~~~~~~fvlK~DDD~fvn~~~L~~~L~~-~~-~~~~~y~G~~~~--~-~~ir~~~~kw~~~~~~---~~~~~~~yP~y~ 207 (270)
....+.+|++..|+|..+.++.|...+.. .. +...++.|.... . .... ...+...... ..........++
T Consensus 75 ~~~~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (214)
T cd04196 75 LQAADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPI--GESFFEYQKIKPGTSFNNLLFQNVV 152 (214)
T ss_pred HHhCCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCc--ccccccccccCCccCHHHHHHhCcc
Confidence 34467899999999999988888877775 22 222333332211 1 1100 0000000000 000011123456
Q ss_pred cCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcC-CCeEecCCCc
Q 024273 208 AGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGV-RATYKDDNRF 256 (270)
Q Consensus 208 ~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~-~v~~~~~~~f 256 (270)
.|++.++.+++++.+....... ...||..+...+... .+..++.+.+
T Consensus 153 ~~~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~~~~ 200 (214)
T cd04196 153 TGCTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDEPLI 200 (214)
T ss_pred CCceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcchhHH
Confidence 7889999999999875433322 467888877766554 3444554433
No 27
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=90.54 E-value=2.7 Score=36.31 Aligned_cols=117 Identities=9% Similarity=-0.014 Sum_probs=64.4
Q ss_pred HHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCC-Cce-EEEEe-ecCcceecCCCceeecCccc-c---C---C
Q 024273 130 FFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQ-ESA-YIGCM-KSGDVVTEEGRQWYEPEWWK-F---G---D 199 (270)
Q Consensus 130 ~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~-~~~-y~G~~-~~~~~ir~~~~kw~~~~~~~-~---~---~ 199 (270)
.++....++.+.+|++.+|+|+.+.++.|.+.+...... ..+ ++|.. ...........+++...+.. + . .
T Consensus 74 ~a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (241)
T cd06427 74 KACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLA 153 (241)
T ss_pred HHHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666677999999999999999998888765322 222 22211 11000000000110000000 0 0 0
Q ss_pred CCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 200 GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 200 ~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
....+..++|++.++++++++.+-.... ....||..++.-+...|.+
T Consensus 154 ~~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r 200 (241)
T cd06427 154 RLGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYR 200 (241)
T ss_pred hcCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCce
Confidence 0122334678889999999988743222 2347999998877665544
No 28
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=90.21 E-value=1.9 Score=35.16 Aligned_cols=116 Identities=9% Similarity=-0.050 Sum_probs=63.5
Q ss_pred HHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhc--CCCCceEEEEeecCcceecCCCceeecCccccCCCCCCCCCC
Q 024273 130 FFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS--RGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHA 207 (270)
Q Consensus 130 ~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~--~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y~ 207 (270)
.++..+.+..+.+|++..|+|..+..+.+...+... .+...+..|....-.........+..... .........++
T Consensus 65 ~a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 142 (202)
T cd06433 65 DAMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRRPPPF--LDKFLLYGMPI 142 (202)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCCCcch--hhhHHhhcCcc
Confidence 344455555568999999999999988888887332 23334555544211000000010000000 00111234456
Q ss_pred cCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 208 AGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 208 ~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
.|++.++++++.+.+...... ....||..+..-+...+..
T Consensus 143 ~~~~~~~~~~~~~~~~~f~~~--~~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 143 CHQATFFRRSLFEKYGGFDES--YRIAADYDLLLRLLLAGKI 182 (202)
T ss_pred cCcceEEEHHHHHHhCCCchh--hCchhhHHHHHHHHHcCCc
Confidence 778889999999887432222 2245788776666555544
No 29
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=89.96 E-value=1.5 Score=36.49 Aligned_cols=116 Identities=12% Similarity=-0.000 Sum_probs=65.5
Q ss_pred EEEEecCceeeChHHHHHHhhhcC-CCCceEEEEeecCcceecCCCceeecCcc-c------cCCCCCCCCCCcCCeeee
Q 024273 143 FYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKSGDVVTEEGRQWYEPEWW-K------FGDGKSYFRHAAGSIFVL 214 (270)
Q Consensus 143 fvlK~DDD~fvn~~~L~~~L~~~~-~~~~~y~G~~~~~~~ir~~~~kw~~~~~~-~------~~~~~~yP~y~~G~~Yil 214 (270)
|++.+|+|+-+..+-|.+.+.... ++-.+.-|..... +..+.-.++...++. . .......+.++.|++.++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 79 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFR-NRGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGMLF 79 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEec-CCCChhheeehhhhhhhhhhhHHHHHhcCCCccccCcceee
Confidence 688999999999988888777654 1112222222211 000111112111110 0 001123466789999999
Q ss_pred CHHHHHHHHHhccccCCCCCChhhHHHHhhcCC--CeEecCCCcccCCC
Q 024273 215 SRNLAQYININSASLKTYAHDDTSVGSWMMGVR--ATYKDDNRFCCSSI 261 (270)
Q Consensus 215 S~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~--v~~~~~~~f~~~~~ 261 (270)
++++++.+.--. -.....||..++.-+...| +..+++....+..+
T Consensus 80 r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p 126 (193)
T PF13632_consen 80 RREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAP 126 (193)
T ss_pred eHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCC
Confidence 999999875322 2345579999988776554 44666654444433
No 30
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=89.88 E-value=10 Score=32.28 Aligned_cols=114 Identities=13% Similarity=0.137 Sum_probs=63.6
Q ss_pred HHHHhhhc--CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceee----cCccccC-----C
Q 024273 131 FFSTAVQI--WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE----PEWWKFG-----D 199 (270)
Q Consensus 131 ~~~w~~~~--~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~----~~~~~~~-----~ 199 (270)
++.++.+. .+.+|++..|+|+.+.++.|...+.... .+. +|.+......++....++. ..+...+ .
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPR--VGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCC--eeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666555 3479999999999999998888887653 222 2222111111111111111 0000000 0
Q ss_pred -CCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCeE
Q 024273 200 -GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATY 250 (270)
Q Consensus 200 -~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~~ 250 (270)
...--.++.|++.++++++++.+---.. .+..||.-++.=+...|.+.
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~~ 198 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYIG 198 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcEE
Confidence 0000124678889999999998743222 23589999988777666553
No 31
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=88.76 E-value=7 Score=30.37 Aligned_cols=94 Identities=11% Similarity=0.026 Sum_probs=48.9
Q ss_pred HHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCC--ceEEEEeecCcc----eecCC-CceeecCcccc--CCC
Q 024273 130 FFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQE--SAYIGCMKSGDV----VTEEG-RQWYEPEWWKF--GDG 200 (270)
Q Consensus 130 ~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~--~~y~G~~~~~~~----ir~~~-~kw~~~~~~~~--~~~ 200 (270)
..+.++.+..+.+|++.+|+|..+..+.|...+......+ .+..|....... ..... .++........ ...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 3444555556899999999999998877777744432222 223333321111 10000 00000000000 001
Q ss_pred CCCCCCCcCCeeeeCHHHHHHHH
Q 024273 201 KSYFRHAAGSIFVLSRNLAQYIN 223 (270)
Q Consensus 201 ~~yP~y~~G~~YilS~dlv~~i~ 223 (270)
...++.+.|+++++++++++.+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 13345678899999999998764
No 32
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=88.72 E-value=5.1 Score=35.72 Aligned_cols=194 Identities=9% Similarity=0.001 Sum_probs=97.0
Q ss_pred EEEEEcCCCChh-hHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhh-----hhHHhhhhCCCeeeeCCCcc
Q 024273 46 VIGVYTGFGSHL-NRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDR-----KIDAENRETKDFLILEGHEE 119 (270)
Q Consensus 46 li~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~-----~l~~E~~~~~DIi~l~d~~D 119 (270)
-|+|++.-...+ -.+.++..+..... .. ....+.+ |++..+.+++....+ ++.+|....-.+.+. .
T Consensus 2 SIliP~~ne~~~~l~~~l~~~~~~~~~--~~-~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~----~ 73 (254)
T cd04191 2 AIVMPVYNEDPARVFAGLRAMYESLAK--TG-LADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYR----R 73 (254)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHHHh--cC-CcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEE----E
Confidence 366777766655 56667766542110 00 0124566 887655432111110 122232222334422 2
Q ss_pred cCCCchHHHHHHHHHhhhc-CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeec---Ccc
Q 024273 120 AQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEP---EWW 195 (270)
Q Consensus 120 sy~nlt~Ktl~~~~w~~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~---~~~ 195 (270)
.-.|.-.|+-..-...... .+.+|++-.|-|+.+.++.|...+......+. +|.+.......+..+-|.-- ...
T Consensus 74 r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~~~~~~~ 151 (254)
T cd04191 74 RRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARLQQFANR 151 (254)
T ss_pred cCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHHHHHHHH
Confidence 2234455666555544433 57899999999999999999888876532222 23332111111111111000 000
Q ss_pred ccC----CCC----CCCCCCcCCeeeeCHHHHHHHHHhc-----ccc-CCCCCChhhHHHHhhcCCCe
Q 024273 196 KFG----DGK----SYFRHAAGSIFVLSRNLAQYININS-----ASL-KTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 196 ~~~----~~~----~yP~y~~G~~YilS~dlv~~i~~~~-----~~~-~~~~~EDv~vG~~l~~~~v~ 249 (270)
.+. .+. .--.+|.|...++.+++++.+.... ... ...-.||..+|..+...|-+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~r 219 (254)
T cd04191 152 LYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWE 219 (254)
T ss_pred HHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCE
Confidence 000 000 0113567999999999988753211 111 12357999999988766654
No 33
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.27 E-value=13 Score=30.66 Aligned_cols=93 Identities=16% Similarity=0.055 Sum_probs=55.1
Q ss_pred HHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcC-CCCceEEEEeecCcceecCCCceeecCccccCCCCCCCCC
Q 024273 128 AKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRH 206 (270)
Q Consensus 128 tl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~-~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y 206 (270)
.-.+++++. ..+.+|++..|||..+..+.|...+.... +.-.++.|... . .++
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~-------------~~~------ 121 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------D-------------PDG------ 121 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------c-------------CCC------
Confidence 344556665 45789999999999999877766665543 11112211110 0 011
Q ss_pred CcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCC
Q 024273 207 AAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA 248 (270)
Q Consensus 207 ~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v 248 (270)
.+++.++.+++++.+--..... ....||+.++.-+...|.
T Consensus 122 -~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G~ 161 (202)
T cd04185 122 -SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAGP 161 (202)
T ss_pred -ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcCC
Confidence 2356789999998763211111 235699998887765543
No 34
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=87.83 E-value=3.6 Score=33.33 Aligned_cols=96 Identities=9% Similarity=0.052 Sum_probs=57.3
Q ss_pred HHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccCCCCCCCCCCcCCe
Q 024273 132 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSI 211 (270)
Q Consensus 132 ~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~ 211 (270)
+....+..+.+|++..|+|..+..+-|...++... ......|..... .. ..-.....|++
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~-~~~~v~g~~~~~------------~~-------~~~~~~~~~~~ 130 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAE-PGVFLSGSRVLL------------NE-------KLTERGIRGCN 130 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhC-CCcEEecceeec------------cc-------ccceeEeccce
Confidence 34444455789999999999998887777776542 222222322100 00 00012345777
Q ss_pred eeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCC
Q 024273 212 FVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 247 (270)
Q Consensus 212 YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~ 247 (270)
+.+.+..+..+..-.........||+-++.-+...|
T Consensus 131 ~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 131 MSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred EEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 888888887543333333334579999888776665
No 35
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=86.94 E-value=18 Score=30.63 Aligned_cols=122 Identities=12% Similarity=-0.036 Sum_probs=61.9
Q ss_pred HHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHh---hhcCCCCc-eEEEEeecCcceecCCCceeecCcc-----c
Q 024273 126 KKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLL---DRSRGQES-AYIGCMKSGDVVTEEGRQWYEPEWW-----K 196 (270)
Q Consensus 126 ~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L---~~~~~~~~-~y~G~~~~~~~ir~~~~kw~~~~~~-----~ 196 (270)
.=.-.+++++.. .+++|++..|+|+.+.++.|...+ ........ ..+|..............+....+. .
T Consensus 62 ~a~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (237)
T cd02526 62 KALNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKE 140 (237)
T ss_pred HhhhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceeccc
Confidence 333445555543 268999999999999988888875 22222222 2233321110000000011110000 0
Q ss_pred cCCCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 197 FGDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 197 ~~~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
......-..++.|++.++++++++.+-...... ....||+.++.-+...|.+
T Consensus 141 ~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~ 192 (237)
T cd02526 141 GEEGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYK 192 (237)
T ss_pred ccCCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCc
Confidence 000001123456778899999999874322221 2357899988877655543
No 36
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=85.80 E-value=34 Score=32.81 Aligned_cols=185 Identities=12% Similarity=0.073 Sum_probs=93.4
Q ss_pred eeEEEEEEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCC
Q 024273 43 LLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQE 122 (270)
Q Consensus 43 ~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~ 122 (270)
..+-|+|++--+...-++.|+. -.++. ..+++++++...+.+ ...+.+++..+++..+.++. ...
T Consensus 75 p~vsViIP~yNE~~~i~~~l~s-ll~q~-------yp~~eIivVdDgs~D---~t~~~~~~~~~~~~~v~vv~-~~~--- 139 (444)
T PRK14583 75 PLVSILVPCFNEGLNARETIHA-ALAQT-------YTNIEVIAINDGSSD---DTAQVLDALLAEDPRLRVIH-LAH--- 139 (444)
T ss_pred CcEEEEEEeCCCHHHHHHHHHH-HHcCC-------CCCeEEEEEECCCCc---cHHHHHHHHHHhCCCEEEEE-eCC---
Confidence 3466666665444333344432 12221 124565555544322 22334444455666555332 111
Q ss_pred CchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCC---ceeecCccccC-
Q 024273 123 ELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGR---QWYEPEWWKFG- 198 (270)
Q Consensus 123 nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~---kw~~~~~~~~~- 198 (270)
|. .|. .+++...+..+.+|++..|.|..+..+.|...+......++ .|.+...+.+++..+ +....++....
T Consensus 140 n~-Gka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~--~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~ 215 (444)
T PRK14583 140 NQ-GKA-IALRMGAAAARSEYLVCIDGDALLDKNAVPYLVAPLIANPR--TGAVTGNPRIRTRSTLIGRVQVGEFSSIIG 215 (444)
T ss_pred CC-CHH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHHHHHHHHhCCC--eEEEEccceecCCCcchhhHHHHHHHHHHH
Confidence 22 243 34555555567899999999999999988887765422222 233322222222211 11100100000
Q ss_pred ----CCCCC--CCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 199 ----DGKSY--FRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 199 ----~~~~y--P~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
....| +..++|++..+.+++++++--..+ ..-.||..+|.-+...|-+
T Consensus 216 ~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~~---~~i~ED~dl~~rl~~~G~~ 269 (444)
T PRK14583 216 LIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWSP---DMITEDIDISWKLQLKHWS 269 (444)
T ss_pred HHHHHHHHhCCceEecCceeEEEHHHHHHcCCCCC---CcccccHHHHHHHHHcCCe
Confidence 00011 123578889999999988742222 2236999999988766554
No 37
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=85.40 E-value=9.7 Score=32.23 Aligned_cols=155 Identities=9% Similarity=0.108 Sum_probs=76.0
Q ss_pred eEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHH
Q 024273 81 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 160 (270)
Q Consensus 81 v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~ 160 (270)
..+++|...+.+. ....+ ++...+..+.++. .+. ..|..+ +....+..+.+|++.+|+|+.+..+.|..
T Consensus 29 ~eiivvdd~s~d~---~~~~l-~~~~~~~~~~v~~--~~~----~g~~~a-~n~g~~~a~~d~v~~lD~D~~~~~~~l~~ 97 (235)
T cd06434 29 LEIIVVTDGDDEP---YLSIL-SQTVKYGGIFVIT--VPH----PGKRRA-LAEGIRHVTTDIVVLLDSDTVWPPNALPE 97 (235)
T ss_pred CEEEEEeCCCChH---HHHHH-HhhccCCcEEEEe--cCC----CChHHH-HHHHHHHhCCCEEEEECCCceeChhHHHH
Confidence 4555665544321 22223 3445666666442 221 223322 23333344789999999999999999888
Q ss_pred HhhhcCCCCceEEEEeecCcceecC-CCcee------ecCc-cccCC-CC--CCCCCCcCCeeeeCHHHHHHHHHhcc--
Q 024273 161 LLDRSRGQESAYIGCMKSGDVVTEE-GRQWY------EPEW-WKFGD-GK--SYFRHAAGSIFVLSRNLAQYININSA-- 227 (270)
Q Consensus 161 ~L~~~~~~~~~y~G~~~~~~~ir~~-~~kw~------~~~~-~~~~~-~~--~yP~y~~G~~YilS~dlv~~i~~~~~-- 227 (270)
.+.... .+. +|.+.......+. .+.|. .... ...+. .. .--+.++|++.++.+++++.+.-...
T Consensus 98 l~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~~~~~~~~ 174 (235)
T cd06434 98 MLKPFE-DPK--VGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSYDGGVPCLSGRTAAYRTEILKDFLFLEEFT 174 (235)
T ss_pred HHHhcc-CCC--EeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhhCCCEEEccCcHHHHHHHHHhhhhhHHHhh
Confidence 887764 222 1222111011111 11110 0000 00000 00 00123567778888888876532211
Q ss_pred -----ccCCCCCChhhHHHHhhcCCCe
Q 024273 228 -----SLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 228 -----~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
..+....||..++.-+...|.+
T Consensus 175 ~~~~~~~~~~~~eD~~l~~~~~~~g~~ 201 (235)
T cd06434 175 NETFMGRRLNAGDDRFLTRYVLSHGYK 201 (235)
T ss_pred hhhhcCCCCCcCchHHHHHHHHHCCCe
Confidence 1234567999998877665554
No 38
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=84.81 E-value=20 Score=29.36 Aligned_cols=112 Identities=13% Similarity=0.190 Sum_probs=61.1
Q ss_pred HHHhhhcCCceEEEEecCceeeChHHHHHHhhhc-C-CCCceEEEEeecCcceecCCCce----eecCccccCCCCC-CC
Q 024273 132 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS-R-GQESAYIGCMKSGDVVTEEGRQW----YEPEWWKFGDGKS-YF 204 (270)
Q Consensus 132 ~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~-~-~~~~~y~G~~~~~~~ir~~~~kw----~~~~~~~~~~~~~-yP 204 (270)
+.++.+....+|++..|+|..+..+.|...+... . +...+..+.... ....... +.+.| .... +.
T Consensus 75 ~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~~ 146 (202)
T cd04184 75 TNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDK----IDEGGKRSEPFFKPDW----SPDLLLS 146 (202)
T ss_pred HHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHh----ccCCCCEeccccCCCC----CHHHhhh
Confidence 4444444567999999999999988888877664 2 222333322110 0111111 11111 0011 11
Q ss_pred CCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCeEecC
Q 024273 205 RHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRATYKDD 253 (270)
Q Consensus 205 ~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~~~~~ 253 (270)
.-+.|++-++++++++.+-.-... ....||.-++.-+...|.+.++.
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~~~~~ 193 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDRIAHI 193 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccceEEEc
Confidence 113455667899998876432221 23579998888777666664443
No 39
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=83.51 E-value=1.7 Score=38.89 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=40.0
Q ss_pred cCCeeeeCHHHHHHHHHhcc----ccCCCCCChhhHHHHhhcCCCeEecCCCcccC
Q 024273 208 AGSIFVLSRNLAQYININSA----SLKTYAHDDTSVGSWMMGVRATYKDDNRFCCS 259 (270)
Q Consensus 208 ~G~~YilS~dlv~~i~~~~~----~~~~~~~EDv~vG~~l~~~~v~~~~~~~f~~~ 259 (270)
+|+|++||..+++.|.+... ..+.+.--|-.+..|++.+++.....++|..-
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ~ 67 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQM 67 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCceeE
Confidence 78999999999999976422 12344557889999999999887777777643
No 40
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=83.40 E-value=22 Score=30.22 Aligned_cols=112 Identities=6% Similarity=-0.052 Sum_probs=58.5
Q ss_pred HHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeec----Cc---cc-----cC
Q 024273 131 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEP----EW---WK-----FG 198 (270)
Q Consensus 131 ~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~----~~---~~-----~~ 198 (270)
++....+..+.+|++.+|.|+.+.++.|...+.... .+. +|.+.......+....|... .. .. .+
T Consensus 78 a~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (232)
T cd06437 78 ALAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARS 154 (232)
T ss_pred HHHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHh
Confidence 345555556789999999999999888888444332 222 23332211111222222100 00 00 00
Q ss_pred CCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 199 DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 199 ~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
....+ ..+.|++-++.+++++.+---.. ....||+.++.-+...|.+
T Consensus 155 ~~~~~-~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~ 201 (232)
T cd06437 155 STGLF-FNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWK 201 (232)
T ss_pred hcCCe-EEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCe
Confidence 00011 12346655788888877632211 2357999998877665544
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=83.06 E-value=18 Score=29.67 Aligned_cols=115 Identities=10% Similarity=0.023 Sum_probs=59.5
Q ss_pred HHHhhhcCCceEEEEecCceeeChHHHHHHhhhcC--CCCceEEEEeec--CcceecCCCceeecCc----cccCCCCCC
Q 024273 132 FSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR--GQESAYIGCMKS--GDVVTEEGRQWYEPEW----WKFGDGKSY 203 (270)
Q Consensus 132 ~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~--~~~~~y~G~~~~--~~~ir~~~~kw~~~~~----~~~~~~~~y 203 (270)
+..+.+..+.+|++..|+|.++.++.|...+.... +.-.++.|.... ..... ...+. .+.. ..+.. ..-
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~-~~~ 148 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGND-IGKRR-LPTSHDDILKFAR-RRS 148 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCe-ecccc-CCCCHHHHHHHhc-cCC
Confidence 44444556789999999999999888888777642 222344443321 00000 00000 1100 00000 011
Q ss_pred CCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCC--CeEecCC
Q 024273 204 FRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR--ATYKDDN 254 (270)
Q Consensus 204 P~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~--v~~~~~~ 254 (270)
+ ..|++.++.+++++.+-... +....||..+...+...+ +..++.+
T Consensus 149 -~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~~ 196 (201)
T cd04195 149 -P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPEI 196 (201)
T ss_pred -C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccHH
Confidence 1 23556677777776642211 225799999988776444 4444433
No 42
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=82.20 E-value=7.8 Score=35.14 Aligned_cols=137 Identities=8% Similarity=0.061 Sum_probs=74.3
Q ss_pred CCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCC-CceEEEEeecC---ccee
Q 024273 108 TKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQ-ESAYIGCMKSG---DVVT 183 (270)
Q Consensus 108 ~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~-~~~y~G~~~~~---~~ir 183 (270)
+.++.++. ..++.- ...=.-.+++.+.... .+|++-.++|+.+..+.|.+.++..... .....|..... +...
T Consensus 55 ~~~v~~i~-~~~NlG-~agg~n~g~~~a~~~~-~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~ 131 (305)
T COG1216 55 FPNVRLIE-NGENLG-FAGGFNRGIKYALAKG-DDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYI 131 (305)
T ss_pred CCcEEEEE-cCCCcc-chhhhhHHHHHHhcCC-CcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcch
Confidence 77888653 233211 0111114666665542 2299999999999988888888765332 23334433221 1100
Q ss_pred cC--------CCceeecCcccc----CCCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCC
Q 024273 184 EE--------GRQWYEPEWWKF----GDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA 248 (270)
Q Consensus 184 ~~--------~~kw~~~~~~~~----~~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v 248 (270)
+. ...|......+. .......++++|++.++++++++.+---.+ --..+.||+-.+.=+...|.
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G~ 207 (305)
T COG1216 132 DRRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAGY 207 (305)
T ss_pred heeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcCC
Confidence 00 111211110000 001112225789999999999999865222 22458999999887766653
No 43
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=82.08 E-value=18 Score=33.37 Aligned_cols=134 Identities=6% Similarity=0.025 Sum_probs=66.5
Q ss_pred CeEEEEEeeecCCCCchhhhhhHHhhhhCCC-eeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHH
Q 024273 80 GVVIRFVIGRSANRGDSLDRKIDAENRETKD-FLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGL 158 (270)
Q Consensus 80 ~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~D-Ii~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L 158 (270)
.++++++...+.+. ..+.+++-++.+++ ++.+. ...++ .|.- ++....++.+.+|++.+|.|...+++.+
T Consensus 38 ~~EIIvVDDgS~D~---T~~il~~~~~~~~~~v~~i~-~~~n~----G~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 38 EYEILLIDDGSSDN---SAEMLVEAAQAPDSHIVAIL-LNRNY----GQHS-AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CEEEEEEeCCCCCc---HHHHHHHHHhhcCCcEEEEE-eCCCC----CHHH-HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 46778887765442 12223332334444 33221 22222 1111 2222333346899999999999999998
Q ss_pred HHHhhhcCCCCceEEEEeecC--cceecCCCceeecCccccCCCCCCCCCCcCCeeeeCHHHHHHHHH
Q 024273 159 IGLLDRSRGQESAYIGCMKSG--DVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYINI 224 (270)
Q Consensus 159 ~~~L~~~~~~~~~y~G~~~~~--~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~YilS~dlv~~i~~ 224 (270)
.++++......++..|..... +..+.-.++.+..-...+ .+..++.+.+ +.-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~-~g~~~~d~~~-gfr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT-TGKAMGDYGC-MLRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH-cCCCCCCCCc-CeEEEcHHHHHHHHH
Confidence 888887643334444443211 122211111111000001 1223444433 245899999999864
No 44
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=81.89 E-value=17 Score=34.99 Aligned_cols=112 Identities=11% Similarity=0.160 Sum_probs=59.3
Q ss_pred HHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCc--eEEEEeecCcceecCCCce---eecC--ccc----cC
Q 024273 130 FFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES--AYIGCMKSGDVVTEEGRQW---YEPE--WWK----FG 198 (270)
Q Consensus 130 ~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~--~y~G~~~~~~~ir~~~~kw---~~~~--~~~----~~ 198 (270)
.+++++.++.+.+|++..|+|..+..+.|.+.+......++ ...|.....+........+ .... +.+ +.
T Consensus 121 ~AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l 200 (439)
T TIGR03111 121 KALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFL 200 (439)
T ss_pred HHHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHH
Confidence 34555666667889999999999999988888866532222 2234332211100000100 1100 000 00
Q ss_pred ------CCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhh
Q 024273 199 ------DGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMM 244 (270)
Q Consensus 199 ------~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~ 244 (270)
....-+..++|++.++.++++.++---. +..-.||..++.-+.
T Consensus 201 ~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~ 249 (439)
T TIGR03111 201 AGRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIR 249 (439)
T ss_pred hhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHH
Confidence 0001122357888889999887753211 122389999987553
No 45
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=81.53 E-value=30 Score=28.86 Aligned_cols=83 Identities=12% Similarity=0.037 Sum_probs=46.5
Q ss_pred CceEEEEecCceeeChHHHHHHhhh-cCCCCceEEEEeecCcceecCCCce--eec---Ccc-ccCCCCCCCCCCcCCee
Q 024273 140 DAEFYVKVDDNIDLDLEGLIGLLDR-SRGQESAYIGCMKSGDVVTEEGRQW--YEP---EWW-KFGDGKSYFRHAAGSIF 212 (270)
Q Consensus 140 ~~~fvlK~DDD~fvn~~~L~~~L~~-~~~~~~~y~G~~~~~~~ir~~~~kw--~~~---~~~-~~~~~~~yP~y~~G~~Y 212 (270)
..+|++.+|+|..+.++.|...+.. ..+...+..|..............+ +.+ ... .... ..-.+.+.|++.
T Consensus 78 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 156 (224)
T cd06442 78 RGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGVEGWGLKRKLISRGANLLARLLL-GRKVSDPTSGFR 156 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCccCCCcHHHHHHHHHHHHHHHHHc-CCCCCCCCCccc
Confidence 4589999999999998888888876 3444455655442211110000000 000 000 0000 011235678888
Q ss_pred eeCHHHHHHHH
Q 024273 213 VLSRNLAQYIN 223 (270)
Q Consensus 213 ilS~dlv~~i~ 223 (270)
++++++++.+.
T Consensus 157 ~~~r~~~~~ig 167 (224)
T cd06442 157 AYRREVLEKLI 167 (224)
T ss_pred hhhHHHHHHHh
Confidence 99999999886
No 46
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=79.66 E-value=45 Score=29.78 Aligned_cols=164 Identities=10% Similarity=0.030 Sum_probs=88.2
Q ss_pred CCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCC-cccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHH
Q 024273 79 RGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGH-EEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEG 157 (270)
Q Consensus 79 ~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~-~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~ 157 (270)
..+.++++-+.+.. +..+.|.+-.+.++-+..+... ....-+.+ .+..-+.+..+.+|++..|.|+++.++.
T Consensus 33 ~~~eiIvvd~~s~~---~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A~~d~l~flD~D~i~~~~~ 105 (281)
T PF10111_consen 33 PDFEIIVVDDGSSD---EFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYARGDYLIFLDADCIPSPDF 105 (281)
T ss_pred CCEEEEEEECCCch---hHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHcCCCEEEEEcCCeeeCHHH
Confidence 45667776665432 2346677777777776223211 11112222 2233344445789999999999999999
Q ss_pred HHHHhh---hcCC-CCceEEEE-eecCccee-----cCCCceeecCccccCC--CCCCC-CCCcCCeeeeCHHHHHHHHH
Q 024273 158 LIGLLD---RSRG-QESAYIGC-MKSGDVVT-----EEGRQWYEPEWWKFGD--GKSYF-RHAAGSIFVLSRNLAQYINI 224 (270)
Q Consensus 158 L~~~L~---~~~~-~~~~y~G~-~~~~~~ir-----~~~~kw~~~~~~~~~~--~~~yP-~y~~G~~YilS~dlv~~i~~ 224 (270)
+...+. .... ...++++- ........ .....|.......+.. .+.+. ....|++.+++++.-..+--
T Consensus 106 i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGG 185 (281)
T PF10111_consen 106 IEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGG 185 (281)
T ss_pred HHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCC
Confidence 888888 3322 22333332 21111110 0000111000000000 11111 22356899999999988865
Q ss_pred hccccCCCCCChhhHHHHhhcCCCe
Q 024273 225 NSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 225 ~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
.-+....+..||.-++.=+...+..
T Consensus 186 fDE~f~G~G~ED~D~~~RL~~~~~~ 210 (281)
T PF10111_consen 186 FDERFRGWGYEDIDFGYRLKKAGYK 210 (281)
T ss_pred CCccccCCCcchHHHHHHHHHcCCc
Confidence 5555666789999998877766554
No 47
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=76.98 E-value=17 Score=29.54 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=69.1
Q ss_pred CeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHH
Q 024273 80 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 159 (270)
Q Consensus 80 ~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~ 159 (270)
.+.++.+.+.+.+. ....+++..+++..+.++. ... |. .|. .+++.+.+....+|++.+|+|.....+.|.
T Consensus 29 ~~eiivvdd~s~d~---t~~~~~~~~~~~~~i~~i~-~~~---n~-G~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 29 DYEIIFVDDGSTDR---TLEILRELAARDPRVKVIR-LSR---NF-GQQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CeEEEEEeCCCCcc---HHHHHHHHHhhCCCEEEEE-ecC---CC-CcH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 45666665544322 2223344344555555442 222 21 122 333444444456999999999999887777
Q ss_pred HHhhhcCCCCceEEEEeecCcceecCCCce----eecCccccCCCCCCCCCCcCCeeeeCHHHHHHHHHhc
Q 024273 160 GLLDRSRGQESAYIGCMKSGDVVTEEGRQW----YEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYININS 226 (270)
Q Consensus 160 ~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw----~~~~~~~~~~~~~yP~y~~G~~YilS~dlv~~i~~~~ 226 (270)
..+........+..|...... .....++ +......++. ..-+...|+..++++++++.+..-.
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~r~~~~~i~~~d 166 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRK--ESWLKRLTSKLFYRLINKLSG--VDIPDNGGDFRLMDRKVVDALLLLP 166 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCc--chHHHHHHHHHHHHHHHHHcC--CCCCCCCCCEEEEcHHHHHHHHhcC
Confidence 777654444456666543211 1000011 0000000111 2234567888999999999886533
No 48
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=75.86 E-value=9.9 Score=35.53 Aligned_cols=80 Identities=13% Similarity=0.146 Sum_probs=48.1
Q ss_pred HHHHhhhcCCceEEEEecCceeeChH---HHHHHhhhcCCCCceEEEEeecCcceecCCCceee----cCccccCCCCCC
Q 024273 131 FFSTAVQIWDAEFYVKVDDNIDLDLE---GLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE----PEWWKFGDGKSY 203 (270)
Q Consensus 131 ~~~w~~~~~~~~fvlK~DDD~fvn~~---~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~----~~~~~~~~~~~y 203 (270)
++.|+.+..++++++.++||..+.++ -+.+.|..+...+++++-.-... .++... +. .+ .+
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd------nG~~~~~~~~~~--~l----yr 155 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND------NGKEHFVDDTPS--LL----YR 155 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc------CCcccccCCCcc--eE----EE
Confidence 55555554569999999999999987 44555555544444443222211 111110 11 11 22
Q ss_pred CCCCcCCeeeeCHHHHHHH
Q 024273 204 FRHAAGSIFVLSRNLAQYI 222 (270)
Q Consensus 204 P~y~~G~~YilS~dlv~~i 222 (270)
-.|+.|.|+++.+++-+.+
T Consensus 156 s~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 156 TDFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred ecCCCchHHHHHHHHHHHh
Confidence 2467799999999999887
No 49
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=72.46 E-value=62 Score=27.82 Aligned_cols=113 Identities=10% Similarity=-0.018 Sum_probs=57.9
Q ss_pred HHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcC-CCCceEEEEeecCcceecCCCce---eecCcc----ccCCCCC
Q 024273 131 FFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSR-GQESAYIGCMKSGDVVTEEGRQW---YEPEWW----KFGDGKS 202 (270)
Q Consensus 131 ~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~-~~~~~y~G~~~~~~~ir~~~~kw---~~~~~~----~~~~~~~ 202 (270)
++....+..+.+|++.+|+|..++++.|...+.... ....+..|......... ....| ..+... ....+..
T Consensus 84 a~n~g~~~a~g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~-~~~~~~r~~~~~~~~~~~~~~~~~~ 162 (243)
T PLN02726 84 AYIHGLKHASGDFVVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGGV-HGWDLRRKLTSRGANVLAQTLLWPG 162 (243)
T ss_pred HHHHHHHHcCCCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCCc-CCccHHHHHHHHHHHHHHHHHhCCC
Confidence 344444445688999999999999988888776542 23456666432110000 00001 000000 0000111
Q ss_pred CCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCC
Q 024273 203 YFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVR 247 (270)
Q Consensus 203 yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~ 247 (270)
. +..+|++.++++++++.+....... . ...|.-+...+...|
T Consensus 163 ~-~d~~g~~~~~rr~~~~~i~~~~~~~-~-~~~~~el~~~~~~~g 204 (243)
T PLN02726 163 V-SDLTGSFRLYKRSALEDLVSSVVSK-G-YVFQMEIIVRASRKG 204 (243)
T ss_pred C-CcCCCcccceeHHHHHHHHhhccCC-C-cEEehHHHHHHHHcC
Confidence 1 2357888899999999986432211 1 223554544444333
No 50
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=72.28 E-value=16 Score=29.41 Aligned_cols=130 Identities=11% Similarity=0.067 Sum_probs=66.5
Q ss_pred eEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHH
Q 024273 81 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 160 (270)
Q Consensus 81 v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~ 160 (270)
..++.+...+.+. ..+.+....+++..+.++. ...+.. | -.++....+....+|++..|+|..+.++.|.+
T Consensus 29 ~eiivvd~~s~d~---~~~~~~~~~~~~~~~~~~~-~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 29 YEIIVVDDGSTDG---TAEIARELAARVPRVRVIR-LSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred EEEEEEcCCCCCC---hHHHHHHHHHhCCCeEEEE-ccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 4555555444321 2334444445555544332 222221 1 13344444444459999999999999888888
Q ss_pred Hhhh-cCCCCceEEEEeecCcceecCCCceee--c----Cc-c-ccCCCCCCCCCCcCCeeeeCHHHHHHHH
Q 024273 161 LLDR-SRGQESAYIGCMKSGDVVTEEGRQWYE--P----EW-W-KFGDGKSYFRHAAGSIFVLSRNLAQYIN 223 (270)
Q Consensus 161 ~L~~-~~~~~~~y~G~~~~~~~ir~~~~kw~~--~----~~-~-~~~~~~~yP~y~~G~~YilS~dlv~~i~ 223 (270)
.+.. ......+..|........ ....++. . .+ . .+.+ .-.....|+.+++++++++.+.
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGG--AGMPLLRRLGSRLFNFLIRLLLG--VRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCc--ccchHHHHHHHHHHHHHHHHHcC--CCCcCCCCceeeeHHHHHHHHH
Confidence 8876 344455666654321110 0011110 0 00 0 0111 1122346778899999999985
No 51
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=71.97 E-value=87 Score=29.28 Aligned_cols=160 Identities=11% Similarity=0.054 Sum_probs=89.4
Q ss_pred eEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHH
Q 024273 81 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 160 (270)
Q Consensus 81 v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~ 160 (270)
.++..+...+.+ +..+.+.+-.+++++.+.+. .. .+-...-..++.+..+..+.++++..|-|+.+..+.|..
T Consensus 85 ~evivv~d~~~d---~~~~~~~~~~~~~~~~~~~~-~~---~~~~~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~ 157 (439)
T COG1215 85 YEVIVVDDGSTD---ETYEILEELGAEYGPNFRVI-YP---EKKNGGKAGALNNGLKRAKGDVVVILDADTVPEPDALRE 157 (439)
T ss_pred ceEEEECCCCCh---hHHHHHHHHHhhcCcceEEE-ec---cccCccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHH
Confidence 566666653322 23445555555665333231 11 111222345566666666699999999999999999999
Q ss_pred HhhhcCCCCce-EEEEeecCcceecCC--Ccee----ecCcc-cc------CCCCCCCCCCcCCeeeeCHHHHHHHHHhc
Q 024273 161 LLDRSRGQESA-YIGCMKSGDVVTEEG--RQWY----EPEWW-KF------GDGKSYFRHAAGSIFVLSRNLAQYININS 226 (270)
Q Consensus 161 ~L~~~~~~~~~-y~G~~~~~~~ir~~~--~kw~----~~~~~-~~------~~~~~yP~y~~G~~YilS~dlv~~i~~~~ 226 (270)
.+......+.. +.|.. .+++.. ..+. .-++. .+ -.....+.+|.|++.++.+++++.+-.
T Consensus 158 ~~~~f~~~~~~~v~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~G~~~~~rr~aL~~~g~-- 231 (439)
T COG1215 158 LVSPFEDPPVGAVVGTP----RIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLSGSSSAFRRSALEEVGG-- 231 (439)
T ss_pred HHhhhcCCCeeEEeCCc----eeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEcceeeeEEHHHHHHhCC--
Confidence 99876433322 22222 111111 1110 00000 00 011124677899999999999998762
Q ss_pred cccCCCCCChhhHHHHhhcCCCe--EecCC
Q 024273 227 ASLKTYAHDDTSVGSWMMGVRAT--YKDDN 254 (270)
Q Consensus 227 ~~~~~~~~EDv~vG~~l~~~~v~--~~~~~ 254 (270)
..+..--||..++..+...|-+ .+++.
T Consensus 232 -~~~~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 232 -WLEDTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred -CCCCceeccHHHHHHHHHCCCeEEEeecc
Confidence 1223346999999988755544 44444
No 52
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=71.94 E-value=1.1e+02 Score=30.34 Aligned_cols=106 Identities=11% Similarity=-0.037 Sum_probs=58.1
Q ss_pred CceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCce----eecCcccc----CC---CCCCCCCCc
Q 024273 140 DAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQW----YEPEWWKF----GD---GKSYFRHAA 208 (270)
Q Consensus 140 ~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw----~~~~~~~~----~~---~~~yP~y~~ 208 (270)
++++++..|-|..+.++.|..+-. ..+...+.-..+. +.....+.| |..++... .+ .-.-+..+.
T Consensus 158 ~~d~vvi~DAD~~v~Pd~Lr~~~~-~~~~~~~VQ~pv~---~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~ 233 (504)
T PRK14716 158 RFAIIVLHDAEDVIHPLELRLYNY-LLPRHDFVQLPVF---SLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSA 233 (504)
T ss_pred CcCEEEEEcCCCCcCccHHHHHHh-hcCCCCEEeccee---ccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC
Confidence 469999999999999988765432 2222221110010 111111111 11000000 00 001233468
Q ss_pred CCeeeeCHHHHHHHHHhcc---ccCCCCCChhhHHHHhhcCCCe
Q 024273 209 GSIFVLSRNLAQYININSA---SLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 209 G~~YilS~dlv~~i~~~~~---~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
|.++++++++++.+..... .-+..--||.-+|.-+...|.+
T Consensus 234 Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~r 277 (504)
T PRK14716 234 GVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFR 277 (504)
T ss_pred CeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCE
Confidence 9999999999999864321 2233468999999988766655
No 53
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=71.27 E-value=26 Score=30.90 Aligned_cols=117 Identities=9% Similarity=-0.095 Sum_probs=57.6
Q ss_pred HHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCC--CceEEEEeecC--cceecC---CCceeecCcc-ccCCCC
Q 024273 130 FFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQ--ESAYIGCMKSG--DVVTEE---GRQWYEPEWW-KFGDGK 201 (270)
Q Consensus 130 ~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~--~~~y~G~~~~~--~~ir~~---~~kw~~~~~~-~~~~~~ 201 (270)
.+++++.+ .+.+|++..|||+.+..+.|...+...... .-..+|..... .....+ ...+..+... ......
T Consensus 64 ~Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (281)
T TIGR01556 64 QGLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLTTP 142 (281)
T ss_pred HHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceeeecccccCCc
Confidence 35666654 368999999999999987777766554322 22233322111 000000 0000000000 000000
Q ss_pred CCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCC
Q 024273 202 SYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA 248 (270)
Q Consensus 202 ~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v 248 (270)
.-..++.++|.++++++++.+---.+.+ ....||+-...=+...|.
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~G~ 188 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNYGI 188 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHCCC
Confidence 1112445566789999999874322222 235688877665554443
No 54
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=71.10 E-value=35 Score=28.33 Aligned_cols=111 Identities=7% Similarity=-0.048 Sum_probs=57.6
Q ss_pred HHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccCCCCCCCCCCcCCee
Q 024273 133 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIF 212 (270)
Q Consensus 133 ~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~Y 212 (270)
.-+.+....+|++.+|+|..+..+.|...+...... ...+|.......-......+....+...+. ....++ ++.+.
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~ 141 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRAD-GAVAGAFRLRFDDPGPRLRLLELGANLRSR-LFGLPY-GDQGL 141 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcC-CcEEEEEEeeecCCccchhhhhhcccceec-ccCCCc-CCceE
Confidence 334444457999999999999987777766554333 334443321100000000000101000000 011122 35688
Q ss_pred eeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 213 VLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 213 ilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
++++++.+.+-.-... +..||.-++.-+...|..
T Consensus 142 ~~r~~~~~~~G~fd~~---~~~ED~d~~~r~~~~G~~ 175 (221)
T cd02522 142 FIRRELFEELGGFPEL---PLMEDVELVRRLRRRGRP 175 (221)
T ss_pred EEEHHHHHHhCCCCcc---ccccHHHHHHHHHhCCCE
Confidence 9999988877432222 278999888766666544
No 55
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=68.50 E-value=57 Score=33.60 Aligned_cols=202 Identities=8% Similarity=-0.021 Sum_probs=102.1
Q ss_pred CCceeEEEEEEcCCCChh-hHHHHHHhhccCCccccccc-cCCeEEEEEeeecCCCCchhhh--hhHHhhhhC---CCee
Q 024273 40 GKKLLAVIGVYTGFGSHL-NRNVYRGSWMPKGDALKKLE-ERGVVIRFVIGRSANRGDSLDR--KIDAENRET---KDFL 112 (270)
Q Consensus 40 ~~k~~lli~V~S~~~~~~-rR~aIR~TW~~~~~~~~~l~-~~~v~v~FvvG~~~~~~~~~~~--~l~~E~~~~---~DIi 112 (270)
++...+.|+|++.-+..+ -+..|+.+..+-.. .. ..++.+ |++..+.+++....+ .+.+-.++| ..|.
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 445677787887765543 33567776654221 00 123444 888766543211111 111112333 2344
Q ss_pred eeCCCcccCCCchHHHHHHHHHhhhc-CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceee
Q 024273 113 ILEGHEEAQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE 191 (270)
Q Consensus 113 ~l~d~~Dsy~nlt~Ktl~~~~w~~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~ 191 (270)
+. ..-.|.-.|.-..-.|.... .+++|++-.|-|+.+..+.|.+.+......+. +|.+...+...+..+ ++.
T Consensus 196 yr----~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~s-lfa 268 (691)
T PRK05454 196 YR----RRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADT-LFA 268 (691)
T ss_pred EE----ECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCC-HHH
Confidence 32 22234456777666666554 67899999999999999998888865422222 354432211122221 110
Q ss_pred c--Cc-cccCC-----CCCC----CCCCcCCeeeeCHHHHHHHHHhc---ccc---CCCCCChhhHHHHhhcCCCe--Ee
Q 024273 192 P--EW-WKFGD-----GKSY----FRHAAGSIFVLSRNLAQYININS---ASL---KTYAHDDTSVGSWMMGVRAT--YK 251 (270)
Q Consensus 192 ~--~~-~~~~~-----~~~y----P~y~~G~~YilS~dlv~~i~~~~---~~~---~~~~~EDv~vG~~l~~~~v~--~~ 251 (270)
- .. ..+|. +..+ -..+.|...++.+++......-. ..- ...--||...|..+...|-+ .+
T Consensus 269 R~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~ 348 (691)
T PRK05454 269 RLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLA 348 (691)
T ss_pred HHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEc
Confidence 0 00 00000 0000 00123666788888877653110 111 12357899999998766544 44
Q ss_pred cC
Q 024273 252 DD 253 (270)
Q Consensus 252 ~~ 253 (270)
.+
T Consensus 349 pd 350 (691)
T PRK05454 349 PD 350 (691)
T ss_pred Cc
Confidence 44
No 56
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=68.40 E-value=81 Score=32.48 Aligned_cols=131 Identities=17% Similarity=0.057 Sum_probs=69.5
Q ss_pred CchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCce-EEEEee--cC-cce-ecCCCceeecC-ccc
Q 024273 123 ELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESA-YIGCMK--SG-DVV-TEEGRQWYEPE-WWK 196 (270)
Q Consensus 123 nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~-y~G~~~--~~-~~i-r~~~~kw~~~~-~~~ 196 (270)
|...|.- .++.+.++.+.+|++..|.|+.+..+-|.+.+......+.+ .++... .+ .++ ++-......+. ...
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 3345543 34555566678999999999999988888777654222222 111110 01 111 11000000000 000
Q ss_pred cC----CC--CCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe--EecCCCcc
Q 024273 197 FG----DG--KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT--YKDDNRFC 257 (270)
Q Consensus 197 ~~----~~--~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~--~~~~~~f~ 257 (270)
+| ++ ..-.+++.|++.++.+++++.+---.. ..-.||..+|.-+...|-+ ..+++...
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~~ 356 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLIA 356 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEecccccc
Confidence 00 00 011245678999999999998742221 2237999999988766655 45544443
No 57
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=66.03 E-value=71 Score=25.96 Aligned_cols=90 Identities=13% Similarity=0.145 Sum_probs=51.9
Q ss_pred HHHHHHHhhhc-CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeec----Ccc---ccC-
Q 024273 128 AKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEP----EWW---KFG- 198 (270)
Q Consensus 128 tl~~~~w~~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~----~~~---~~~- 198 (270)
.-.+++++.+. .+.+|++.+|.|+.+.++.|...+........+..|..... ++...|... .+. .+.
T Consensus 68 ln~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 143 (183)
T cd06438 68 LDFGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSK----NPDDSWITRLYAFAFLVFNRLRP 143 (183)
T ss_pred HHHHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeee----CCccCHHHHHHHHHHHHHHHHHH
Confidence 33455555422 46899999999999998888777766544445556655321 111122100 000 000
Q ss_pred -C--CCCCCCCCcCCeeeeCHHHHHH
Q 024273 199 -D--GKSYFRHAAGSIFVLSRNLAQY 221 (270)
Q Consensus 199 -~--~~~yP~y~~G~~YilS~dlv~~ 221 (270)
. .-.-+.++.|+++++++++++.
T Consensus 144 ~~~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 144 LGRSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHHHcCCCeeecCchhhhHHHHHHh
Confidence 0 0022345789999999999988
No 58
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=57.32 E-value=77 Score=23.52 Aligned_cols=30 Identities=17% Similarity=0.108 Sum_probs=22.9
Q ss_pred HhhhcCCceEEEEecCceeeChHHHHHHhh
Q 024273 134 TAVQIWDAEFYVKVDDNIDLDLEGLIGLLD 163 (270)
Q Consensus 134 w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~ 163 (270)
.+.+..+.+|++.+|+|..+.++.+...+.
T Consensus 71 ~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~ 100 (156)
T cd00761 71 AGLKAARGEYILFLDADDLLLPDWLERLVA 100 (156)
T ss_pred HHHHHhcCCEEEEECCCCccCccHHHHHHH
Confidence 333334689999999999999888877644
No 59
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=55.86 E-value=1.2e+02 Score=25.28 Aligned_cols=43 Identities=12% Similarity=0.169 Sum_probs=29.1
Q ss_pred HhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEe
Q 024273 134 TAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCM 176 (270)
Q Consensus 134 w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~ 176 (270)
...+..+.+|++.+|+|..+.++.|...+......+...+|+.
T Consensus 78 ~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~~ 120 (219)
T cd06913 78 QAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGCQ 120 (219)
T ss_pred HHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEEE
Confidence 3444456899999999999998888776655433333455543
No 60
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=54.19 E-value=2.7e+02 Score=28.91 Aligned_cols=190 Identities=12% Similarity=-0.049 Sum_probs=92.5
Q ss_pred eeEEEEEEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCC
Q 024273 43 LLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQE 122 (270)
Q Consensus 43 ~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~ 122 (270)
..+-|+|+..-+...-.+.|...=.+.. -.++.+.+++. +.+ + ...+.+++-.++|+++..+. ... .
T Consensus 63 ~~vsIlVPa~nE~~vi~~~i~~ll~~ld-------YP~~eI~vi~~-~nD-~-~T~~~~~~l~~~~p~~~~v~-~~~--~ 129 (727)
T PRK11234 63 KPLAIMVPAWNETGVIGNMAELAATTLD-------YENYHIFVGTY-PND-P-ATQADVDAVCARFPNVHKVV-CAR--P 129 (727)
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHhCC-------CCCeEEEEEec-CCC-h-hHHHHHHHHHHHCCCcEEEE-eCC--C
Confidence 5667777765544434444443211211 13455666554 222 1 22344555456777753221 112 1
Q ss_pred CchHHHH---HHHHHhhhc-----CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCcee----
Q 024273 123 ELPKKAK---FFFSTAVQI-----WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWY---- 190 (270)
Q Consensus 123 nlt~Ktl---~~~~w~~~~-----~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~---- 190 (270)
..+.|.- .+++.+.+. ..++.++-.|-|+.+.++.|. .+........+.-+... +..++ .+.|-
T Consensus 130 g~~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~~~VQ~p~~--p~~~~-~~~~~~~~~ 205 (727)
T PRK11234 130 GPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLVERKDLIQIPVY--PFERE-WTHFTSGTY 205 (727)
T ss_pred CCCCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCCCeEeeccc--CCCcc-HHHHHHHHH
Confidence 1234543 233333221 135567779999999999986 34333222222222111 11111 11111
Q ss_pred ecCcc-ccCC----CCC--CCCCCcCCeeeeCHHHHHHHHHhc---cccCCCCCChhhHHHHhhcCCCe
Q 024273 191 EPEWW-KFGD----GKS--YFRHAAGSIFVLSRNLAQYININS---ASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 191 ~~~~~-~~~~----~~~--yP~y~~G~~YilS~dlv~~i~~~~---~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
..++. .+.. ... -+-.++|.+..+||.+++.+.+.. ......--||.-+|.-+...|.+
T Consensus 206 ~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~ 274 (727)
T PRK11234 206 IDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMR 274 (727)
T ss_pred HHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCE
Confidence 11110 0000 001 233578999999998877665544 33344568999999988766655
No 61
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=51.84 E-value=19 Score=31.30 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=59.5
Q ss_pred CCceEEEEecCceeeChHHHHHHhhhcCCCCc--eEEEEeecCcceecCCCceee---------cCcc--ccCCCCCCCC
Q 024273 139 WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQES--AYIGCMKSGDVVTEEGRQWYE---------PEWW--KFGDGKSYFR 205 (270)
Q Consensus 139 ~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~--~y~G~~~~~~~ir~~~~kw~~---------~~~~--~~~~~~~yP~ 205 (270)
.+.+|++.+|.|+.+..+.|...+......+. ...|.... .++...|.. ..+. ..-..-.+..
T Consensus 72 a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~----~~~~~~~~~~~q~~ey~~~~~~~~~~~s~~g~~~ 147 (244)
T cd04190 72 DDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHP----MGKKQGPLVMYQVFEYAISHWLDKAFESVFGFVT 147 (244)
T ss_pred CCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEE----cCCcchhHHHhHheehhhhhhhcccHHHcCCceE
Confidence 47999999999999999988887766532222 22233221 111111110 0000 0001113455
Q ss_pred CCcCCeeeeCHHHHHHHHHhccc----------c-------CCCCCChhhHHHHhhcCCCe
Q 024273 206 HAAGSIFVLSRNLAQYININSAS----------L-------KTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 206 y~~G~~YilS~dlv~~i~~~~~~----------~-------~~~~~EDv~vG~~l~~~~v~ 249 (270)
.+.|+++++.+++++.+...... + +...-||..++..+...|-+
T Consensus 148 ~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~ 208 (244)
T cd04190 148 CLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPK 208 (244)
T ss_pred ECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCc
Confidence 67899999999998876321110 0 12247999998887655533
No 62
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=47.44 E-value=25 Score=31.30 Aligned_cols=101 Identities=12% Similarity=0.163 Sum_probs=54.7
Q ss_pred CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceee-cCccccCCCCCCCCCCcCCeeeeCHH
Q 024273 139 WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYE-PEWWKFGDGKSYFRHAAGSIFVLSRN 217 (270)
Q Consensus 139 ~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~-~~~~~~~~~~~yP~y~~G~~YilS~d 217 (270)
...+-|+-+|||+.++.+.|......++..++-++|..-.....-...++|-- +.|.. .|- -.-.++-++.+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~~~-----~yS-mvLt~aaf~h~~ 147 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEWSN-----EYS-MVLTGAAFYHRY 147 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SSS-------BS-EE-TTEEEEETH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCCCC-----cch-hhhhhhHhhcch
Confidence 46889999999999999999888888776667788876322211224556633 33311 221 123445555665
Q ss_pred HHHHHHHhc-----ccc-CCCCCChhhHHHHhhc
Q 024273 218 LAQYININS-----ASL-KTYAHDDTSVGSWMMG 245 (270)
Q Consensus 218 lv~~i~~~~-----~~~-~~~~~EDv~vG~~l~~ 245 (270)
-...-.... ..+ ....-||+.+-.+++.
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs~ 181 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVSN 181 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 554322110 011 2357899988777653
No 63
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=44.93 E-value=1.5e+02 Score=24.48 Aligned_cols=165 Identities=11% Similarity=0.017 Sum_probs=81.3
Q ss_pred CCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHH
Q 024273 79 RGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGL 158 (270)
Q Consensus 79 ~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L 158 (270)
..+.++.+-+.+.+. ....+++..+.++..+.+-.... |. .+. .++....+....+|++.+|+|....++.+
T Consensus 29 ~~~eiivvdd~S~D~---t~~~~~~~~~~~~~~i~~i~~~~---n~-G~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSKDG---TAEVARKLARKNPALIRVLTLPK---NR-GKG-GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCCCc---hHHHHHHHHHhCCCcEEEEEccc---CC-CcH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 346777776655432 23344555556665421111222 21 122 23333334445699999999999999988
Q ss_pred HHHhhh-cCCCCceEEEEeecCcceecCCCceee---cC----ccccCCCCCCCCCCcCCeeeeCHHHHHHHHHhccccC
Q 024273 159 IGLLDR-SRGQESAYIGCMKSGDVVTEEGRQWYE---PE----WWKFGDGKSYFRHAAGSIFVLSRNLAQYININSASLK 230 (270)
Q Consensus 159 ~~~L~~-~~~~~~~y~G~~~~~~~ir~~~~kw~~---~~----~~~~~~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~ 230 (270)
...+.. ......+.+|..............|+. +. +.....+..+. -+..+..++++.+++.+..... ..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~g~~~~~r~~~~~~~~~~~-~~ 178 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVRLLLGLGIK-DTQCGFKLFTRDAARRLFPRLH-LE 178 (211)
T ss_pred HHHHHHHhccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHHHHcCCCCc-ccccCceeEcHHHHHHHHhhhh-cc
Confidence 888876 334446677755322110000011110 00 00000011111 1234678999999998863322 12
Q ss_pred CCCCChhhHHHHhhcCCCeEecCC
Q 024273 231 TYAHDDTSVGSWMMGVRATYKDDN 254 (270)
Q Consensus 231 ~~~~EDv~vG~~l~~~~v~~~~~~ 254 (270)
. ..+|.-+-.-+...|.+....+
T Consensus 179 ~-~~~d~el~~r~~~~g~~~~~vp 201 (211)
T cd04188 179 R-WAFDVELLVLARRLGYPIEEVP 201 (211)
T ss_pred c-eEeeHHHHHHHHHcCCeEEEcC
Confidence 2 2357766555555555544333
No 64
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=39.48 E-value=5e+02 Score=27.64 Aligned_cols=121 Identities=17% Similarity=0.037 Sum_probs=65.2
Q ss_pred CchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeec-----C-cce-ecCCC-ceeecCc
Q 024273 123 ELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKS-----G-DVV-TEEGR-QWYEPEW 194 (270)
Q Consensus 123 nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~-----~-~~i-r~~~~-kw~~~~~ 194 (270)
|...|.- .++.+.++.+.+|++..|.|..+..+-|...+......++ +|.+.. + .|. ++-.. .....+.
T Consensus 323 n~~gKAG-nLN~aL~~a~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~--VglVQtp~~f~n~dp~~rnl~~~~~~~~e~ 399 (852)
T PRK11498 323 HEHAKAG-NINNALKYAKGEFVAIFDCDHVPTRSFLQMTMGWFLKDKK--LAMMQTPHHFFSPDPFERNLGRFRKTPNEG 399 (852)
T ss_pred CCcchHH-HHHHHHHhCCCCEEEEECCCCCCChHHHHHHHHHHHhCCC--eEEEEcceeccCCchHHHhhHHHhhcccch
Confidence 3344554 4555555667899999999999998887776643211122 122210 1 010 10000 0000000
Q ss_pred cccCC----C--CCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 195 WKFGD----G--KSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 195 ~~~~~----~--~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
..+|. + ..-..+|.|++.++.+++++.+---.. ...-||..++.-+...|-+
T Consensus 400 ~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd~---~titED~dlslRL~~~Gyr 457 (852)
T PRK11498 400 TLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIAV---ETVTEDAHTSLRLHRRGYT 457 (852)
T ss_pred hHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCCC---CccCccHHHHHHHHHcCCE
Confidence 00110 0 001245789999999999999843222 1236999999988776654
No 65
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=36.90 E-value=2.3e+02 Score=27.63 Aligned_cols=117 Identities=9% Similarity=0.055 Sum_probs=52.3
Q ss_pred hhHHhhhhCCCeee---eCCCcccCC---C--c--hHHHHHHHHHhhhc----CCceEEEEecCceeeChHHHHHHhhhc
Q 024273 100 KIDAENRETKDFLI---LEGHEEAQE---E--L--PKKAKFFFSTAVQI----WDAEFYVKVDDNIDLDLEGLIGLLDRS 165 (270)
Q Consensus 100 ~l~~E~~~~~DIi~---l~d~~Dsy~---n--l--t~Ktl~~~~w~~~~----~~~~fvlK~DDD~fvn~~~L~~~L~~~ 165 (270)
...++++.|+|-+. .+++.+.-. + + -.|.-.-++|+.++ .+++.++-+.||.-+-++=+ +++...
T Consensus 137 ~~~~vi~~y~~~v~~i~~~~~~~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf-~Yf~~~ 215 (434)
T PF03071_consen 137 EVAEVIKSYGDQVTYIQHPDFSPITIPPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFF-EYFSAT 215 (434)
T ss_dssp HHHHHHHGGGGGSEEEE-S--S-----TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHH-HHHHHH
T ss_pred HHHHHHHHhhhhheeeecCCcCCceeCcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHH-HHHHHH
Confidence 45666777865542 222222111 0 1 13455667777665 36889999999999975533 333221
Q ss_pred ----CCCCceEEEEeecCcceecCCCceeecCccccCCCCCCCCCCcCCeeeeCHHHHHHHHH
Q 024273 166 ----RGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYINI 224 (270)
Q Consensus 166 ----~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~YilS~dlv~~i~~ 224 (270)
...+.+++-.-.+..........- .|. .+|. -.|+-|-|++|++++-..+..
T Consensus 216 ~~ll~~D~sl~ciSawNdnG~~~~~~~~-~~~--~lyR----sdffpglGWml~r~~w~el~~ 271 (434)
T PF03071_consen 216 LPLLENDPSLWCISAWNDNGKEHFVDDS-RPS--LLYR----SDFFPGLGWMLTRELWDELEP 271 (434)
T ss_dssp HHHHHH-TTEEEEES--TT-BGGGS-TT--TT---EEE----ESS---SSEEEEHHHHHHHGG
T ss_pred HHHHhcCCCeEEEEccccCCccccccCC-Ccc--ceEe----cccCCchHHHhhHHHHHhhcc
Confidence 223445543332211110000000 011 1221 124458999999999987643
No 66
>COG5454 Predicted secreted protein [Function unknown]
Probab=36.85 E-value=17 Score=26.83 Aligned_cols=22 Identities=18% Similarity=0.006 Sum_probs=18.6
Q ss_pred EEcCCCChh-hHHHHHHhhccCC
Q 024273 49 VYTGFGSHL-NRNVYRGSWMPKG 70 (270)
Q Consensus 49 V~S~~~~~~-rR~aIR~TW~~~~ 70 (270)
|.|+|.++. .|..||.||++..
T Consensus 40 v~sAP~~p~~~R~vl~TT~~sav 62 (89)
T COG5454 40 VPSAPANPHLLRAVLRTTVASAV 62 (89)
T ss_pred CCCCCCCcchhhHHHHHHHHHHH
Confidence 789998766 8999999999853
No 67
>PLN03181 glycosyltransferase; Provisional
Probab=28.22 E-value=2.9e+02 Score=26.91 Aligned_cols=94 Identities=17% Similarity=0.146 Sum_probs=52.5
Q ss_pred HHHHHhhccCCccccccccCCeEEEEEeeecC----CC-Cch-hhhhhH---HhhhhCCCeeeeCC-Ccc-cCCCchHHH
Q 024273 60 NVYRGSWMPKGDALKKLEERGVVIRFVIGRSA----NR-GDS-LDRKID---AENRETKDFLILEG-HEE-AQEELPKKA 128 (270)
Q Consensus 60 ~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~----~~-~~~-~~~~l~---~E~~~~~DIi~l~d-~~D-sy~nlt~Kt 128 (270)
+.-|+.|.+....... ..+-+|+.|.|..+ ++ ++. +.+.++ +=+++||=-++..+ ..+ .+.....|.
T Consensus 109 D~kR~~Wl~~~p~~~~--~~~prVViVT~Sdp~~C~~~~gD~~LlriikNR~dYArrHGY~lf~~~a~Ld~~~p~~WaKi 186 (453)
T PLN03181 109 DEKRAEWLKLHPSFAP--GAEERVVMVTGSQPTPCKNPIGDHLLLRFFKNKVDYCRIHGYDIFYNNALLHPKMNSYWAKL 186 (453)
T ss_pred HHHHHHHHHhCCCCCC--CCCCCEEEEECCCCCCCCCcccHHHHHHHHHHHHHHHHHhCCcEEEeccccCccCchhhhHH
Confidence 4556678775442111 22345677777542 11 111 111221 11334552222222 222 566678888
Q ss_pred HHHHHHhhhcCCceEEEEecCceee-Ch
Q 024273 129 KFFFSTAVQIWDAEFYVKVDDNIDL-DL 155 (270)
Q Consensus 129 l~~~~w~~~~~~~~fvlK~DDD~fv-n~ 155 (270)
..+-.-+.++|.++|+.-+|.|+++ |+
T Consensus 187 palRaAM~a~PeAEWfWWLDsDALIMNp 214 (453)
T PLN03181 187 PVVRAAMLAHPEAEWIWWVDSDAVFTDM 214 (453)
T ss_pred HHHHHHHHHCCCceEEEEecCCceeecC
Confidence 8877777778999999999999988 44
No 68
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=26.93 E-value=81 Score=29.45 Aligned_cols=39 Identities=13% Similarity=0.151 Sum_probs=32.8
Q ss_pred HHHHHHHHHhhhc-CCceEEEEecCceeeChHHHHHHhhh
Q 024273 126 KKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLEGLIGLLDR 164 (270)
Q Consensus 126 ~Ktl~~~~w~~~~-~~~~fvlK~DDD~fvn~~~L~~~L~~ 164 (270)
-+....+.|+... +..+|++|+|.|-..+...|....-.
T Consensus 160 n~l~~YYNy~ls~ipk~~w~iKID~DhIy~~~KL~ksfY~ 199 (347)
T PF06306_consen 160 NSLYNYYNYVLSFIPKNEWAIKIDADHIYDTKKLYKSFYI 199 (347)
T ss_pred hhhhhhhhhhhcccccceEEEEeccceeecHHHHhhhhee
Confidence 4566788888888 88999999999999999998776643
No 69
>PRK10018 putative glycosyl transferase; Provisional
Probab=25.95 E-value=4.8e+02 Score=23.34 Aligned_cols=33 Identities=18% Similarity=0.292 Sum_probs=25.4
Q ss_pred HHhhhcCCceEEEEecCceeeChHHHHHHhhhc
Q 024273 133 STAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS 165 (270)
Q Consensus 133 ~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~ 165 (270)
..+.+..+.+|++..|+|..+.++.|...+...
T Consensus 78 N~gi~~a~g~~I~~lDaDD~~~p~~l~~~~~~~ 110 (279)
T PRK10018 78 NQAIMLAQGEYITGIDDDDEWTPNRLSVFLAHK 110 (279)
T ss_pred HHHHHHcCCCEEEEECCCCCCCccHHHHHHHHH
Confidence 334444578999999999999988888777653
No 70
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=25.07 E-value=1.1e+02 Score=27.51 Aligned_cols=52 Identities=21% Similarity=0.261 Sum_probs=32.7
Q ss_pred CCcCCeeeeCHHHHHHHHHhccccC-CCCCChhhHHHHhhcCCCe-EecCCCcc
Q 024273 206 HAAGSIFVLSRNLAQYININSASLK-TYAHDDTSVGSWMMGVRAT-YKDDNRFC 257 (270)
Q Consensus 206 y~~G~~YilS~dlv~~i~~~~~~~~-~~~~EDv~vG~~l~~~~v~-~~~~~~f~ 257 (270)
+.+-+||++|+.+++.+....+..+ ..+.|+.+.-.+....+.+ ....+..|
T Consensus 154 ~~gt~gYiis~~aAk~fl~~~~~~~~~~pvD~~~~~~~~~~~~~~vyq~~p~~~ 207 (255)
T COG3306 154 HLGTAGYIISRKAAKKFLELTESFKVVLPVDWFMFLEFLHGVGNKVYQPFPAIC 207 (255)
T ss_pred ccCccceeecHHHHHHHHHHhhhcccccChhHHHhhhhccccCceEEEeccccc
Confidence 3556899999999999987665433 3467776665555444433 23344333
No 71
>PLN03182 xyloglucan 6-xylosyltransferase; Provisional
Probab=24.63 E-value=2.5e+02 Score=27.13 Aligned_cols=93 Identities=13% Similarity=0.141 Sum_probs=53.5
Q ss_pred HHHHHhhccCCccccccccCCeEEEEEeeecCCC-----Cc-hhhhhhH---HhhhhCCCeeeeCCC---cccCCCchHH
Q 024273 60 NVYRGSWMPKGDALKKLEERGVVIRFVIGRSANR-----GD-SLDRKID---AENRETKDFLILEGH---EEAQEELPKK 127 (270)
Q Consensus 60 ~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~-----~~-~~~~~l~---~E~~~~~DIi~l~d~---~Dsy~nlt~K 127 (270)
+.-|+.|.+...........+-+++-|.|..+.+ ++ -+.+.++ .=++.||=-++. +. .+.....+.|
T Consensus 106 d~~R~~wl~~~p~~~~~~~g~prVviVT~sdp~~c~n~~gd~yLlks~kNK~dYAr~HGY~~fy-n~~~ld~~~p~~WaK 184 (429)
T PLN03182 106 DEQRRRWLRKNPGFPSFVNGKPRVLLVTGSQPKPCENPVGDHYLLKSLKNKIDYCRLHGIEIFY-NMAHLDAEMAGFWAK 184 (429)
T ss_pred HHHHHHHHHhCCCCCCccCCCCCEEEEeCCCCCcCCCcccHHHHHHHHHHHHHHHHHhCCEEEe-ehhhcCcCCCcchhH
Confidence 4556677775431111111224678888765432 11 1122222 112345533333 32 2334566889
Q ss_pred HHHHHHHhhhcCCceEEEEecCceee
Q 024273 128 AKFFFSTAVQIWDAEFYVKVDDNIDL 153 (270)
Q Consensus 128 tl~~~~w~~~~~~~~fvlK~DDD~fv 153 (270)
.-+.-+-+.++|.++|+.=+|.|+++
T Consensus 185 lpaLR~aM~~~PeaEWiWWLDsDALI 210 (429)
T PLN03182 185 LPLLRKLMLAHPEVEWIWWMDSDALF 210 (429)
T ss_pred HHHHHHHHHHCCCceEEEEecCCcee
Confidence 98888888888999999999999988
No 72
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=24.45 E-value=4.5e+02 Score=22.50 Aligned_cols=141 Identities=12% Similarity=0.129 Sum_probs=63.7
Q ss_pred hHHhhhhCCCeeeeCCCccc---CCCchHHHHHHHHHhhhc-CCceEEEEecCceee--ChHHHHHHhhhcCCCCceEEE
Q 024273 101 IDAENRETKDFLILEGHEEA---QEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDL--DLEGLIGLLDRSRGQESAYIG 174 (270)
Q Consensus 101 l~~E~~~~~DIi~l~d~~Ds---y~nlt~Ktl~~~~w~~~~-~~~~fvlK~DDD~fv--n~~~L~~~L~~~~~~~~~y~G 174 (270)
+.+-.+.+..+.++++-.+. -.++..=++..++.+.+. ++.+|++-+..+.|. ....+.++|....... .++.
T Consensus 45 ~~~~~~~~~nv~~v~~r~~v~WG~~S~v~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~~l~~~~~~~-~f~~ 123 (244)
T PF02485_consen 45 IKKLISCFPNVHFVPKRVDVRWGGFSLVEATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHEFLESNNGDN-NFIE 123 (244)
T ss_dssp HHHHHCT-TTEEE-SS-----TTSHHHHHHHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHHHHHHTTT---B---
T ss_pred HHHhcccCCceeecccccccccCCccHHHHHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHHHHHhcCCCC-ccee
Confidence 44334567777656533332 235667788889999985 788888877766665 5677999998753222 2332
Q ss_pred EeecCcceecCCCceeecCccccCCCCCC-CCCCcCCeeeeCHHHHHHHHHhcc-------cc-CCCCCChhhHHHHhh
Q 024273 175 CMKSGDVVTEEGRQWYEPEWWKFGDGKSY-FRHAAGSIFVLSRNLAQYININSA-------SL-KTYAHDDTSVGSWMM 244 (270)
Q Consensus 175 ~~~~~~~ir~~~~kw~~~~~~~~~~~~~y-P~y~~G~~YilS~dlv~~i~~~~~-------~~-~~~~~EDv~vG~~l~ 244 (270)
......+ ... .+|....+..+.+.-.. ..|-+..=++||+++|+.|+.... .. ..+-.|-.++.-++.
T Consensus 124 ~~~~~~~-~~~-~r~~~~~~~~~~~~~~~~~~~~GSqW~~Ltr~~v~~il~~~~~~~~~~~~~~~~~~pDE~ffqTll~ 200 (244)
T PF02485_consen 124 SFSDEDP-RES-GRYNPRIYDPFRPFFRKRTLYKGSQWFSLTRDFVEYILDDPNYRPKLKKYFRFSLCPDESFFQTLLN 200 (244)
T ss_dssp BEE--GG-GG--HHHHEEEETTEEEEEEEE--EEE-S--EEEHHHHHHHHH-HHHHHHHHHHT-TSSSGGGTHHHHH--
T ss_pred ccccccc-chh-hcceeeeeeecccccccccccccceeeEeeHHHHHHhhhhHHHHHHHHHhhcCccCcchhhHHHhhc
Confidence 2221111 011 22211100000000000 224444588999999999874321 11 224466677755543
No 73
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=23.21 E-value=67 Score=32.07 Aligned_cols=110 Identities=18% Similarity=0.243 Sum_probs=63.2
Q ss_pred CceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCcee-ecCccccCCCCCCCCCCcCCeeeeCHHH
Q 024273 140 DAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWY-EPEWWKFGDGKSYFRHAAGSIFVLSRNL 218 (270)
Q Consensus 140 ~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~-~~~~~~~~~~~~yP~y~~G~~YilS~dl 218 (270)
..+=|+-+|||+.+.-+.|.--.+-++.-++-++|....-..-....++|+ .++|. .+-..||+..+
T Consensus 519 eT~AVL~IDDDIim~~ddldFgf~VWrefPD~lVGF~pR~H~~t~s~~k~~y~sewt------------~qySMVLtGAA 586 (691)
T KOG1022|consen 519 ETEAVLEIDDDIIMPCDDLDFGFEVWREFPDRLVGFVPRFHVWTMSYSKWKYESEWT------------NQYSMVLTGAA 586 (691)
T ss_pred ccceeEEecCceeeecchhHHHHHHHHhCccceeccCcceeecccccchhhheeecC------------CceEEEEechh
Confidence 467799999999999888887777776666778887732222233444543 33332 22345666655
Q ss_pred HHH-----HHHhc--ccc-----CCCCCChhhHHHHhhcC----CCeEecCCCcccCCC
Q 024273 219 AQY-----ININS--ASL-----KTYAHDDTSVGSWMMGV----RATYKDDNRFCCSSI 261 (270)
Q Consensus 219 v~~-----i~~~~--~~~-----~~~~~EDv~vG~~l~~~----~v~~~~~~~f~~~~~ 261 (270)
--. |+... ... ..+.-||+.+..+.+.. .|+.+.-.-|.|...
T Consensus 587 Ffhk~y~~lYt~~mPa~ir~~vDe~~NCEDIAMNFLiANatg~~aI~Vkp~~~~~~~~~ 645 (691)
T KOG1022|consen 587 FFHKKYLDLYTSDMPADIRVFVDEHMNCEDIAMNFLIANATGKPAIKVKPRKKFKCPEC 645 (691)
T ss_pred HHHHHHHHHhhhcccchHHHhhhcccCHHHHHHHHHhhhccCCCceEEeCcccccCccc
Confidence 532 22211 111 24579999887776532 344444434454444
No 74
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=22.65 E-value=67 Score=26.53 Aligned_cols=77 Identities=8% Similarity=-0.004 Sum_probs=42.0
Q ss_pred ceEEEEecCceeeChHHHHHHhhhcCCCCce--EEEEeecCcceecCCCceee----cCcccc------CCCCCCCCCCc
Q 024273 141 AEFYVKVDDNIDLDLEGLIGLLDRSRGQESA--YIGCMKSGDVVTEEGRQWYE----PEWWKF------GDGKSYFRHAA 208 (270)
Q Consensus 141 ~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~--y~G~~~~~~~ir~~~~kw~~----~~~~~~------~~~~~yP~y~~ 208 (270)
.+|++.+|.|..+.++.|........ .+.+ ..|.+. ..+...+|.. -+|... .....-.-+++
T Consensus 90 ~d~v~~~DaD~~~~~~~l~~~~~~~~-~~~v~~v~~~~~----~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~ 164 (191)
T cd06436 90 RVIIAVIDADGRLDPNALEAVAPYFS-DPRVAGTQSRVR----MYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLG 164 (191)
T ss_pred ccEEEEECCCCCcCHhHHHHHHHhhc-CCceEEEeeeEE----EecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEEC
Confidence 47999999999999998888554432 2221 222221 1223333321 111000 00000112357
Q ss_pred CCeeeeCHHHHHHH
Q 024273 209 GSIFVLSRNLAQYI 222 (270)
Q Consensus 209 G~~YilS~dlv~~i 222 (270)
|.+.++++++++.+
T Consensus 165 G~~~~~r~~~l~~v 178 (191)
T cd06436 165 GNGQFMRLSALDGL 178 (191)
T ss_pred CeeEEEeHHHHHHh
Confidence 88999999999988
No 75
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=22.22 E-value=3.9e+02 Score=24.48 Aligned_cols=18 Identities=11% Similarity=0.333 Sum_probs=14.6
Q ss_pred CCceEEEEecCceeeChH
Q 024273 139 WDAEFYVKVDDNIDLDLE 156 (270)
Q Consensus 139 ~~~~fvlK~DDD~fvn~~ 156 (270)
...+|++-..||+.....
T Consensus 168 ~~~~YyL~LEDDVia~~~ 185 (297)
T PF04666_consen 168 NLGDYYLQLEDDVIAAPG 185 (297)
T ss_pred hcCCeEEEecCCeEechh
Confidence 357899999999988754
No 76
>PHA01631 hypothetical protein
Probab=21.52 E-value=3.6e+02 Score=22.79 Aligned_cols=63 Identities=11% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccCCCCCCCCCCcCCeeeeCHHH
Q 024273 139 WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNL 218 (270)
Q Consensus 139 ~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~YilS~dl 218 (270)
-+-+.++.+|.|++|+.-. ..+ ++..++.=|.. -+ +. |....-+||.|--+++.++.
T Consensus 70 i~DDi~~iIDSDV~ipn~~--~~~----~~~~v~t~CiP----A~------~k-------p~~~v~~FC~sTNf~~pr~~ 126 (176)
T PHA01631 70 IEDDIIAIIDSDLIIPNLR--EII----PNERVFTPCYW----LY------YD-------WANEIRPFCSGTNYIFRKSL 126 (176)
T ss_pred CCccEEEEeccceEecCcc--ccc----cCCCccceeee----ee------ec-------CCCcEEEEEccccEEeeHHH
Confidence 4567888999999996442 111 22223333331 00 01 22345589999999999999
Q ss_pred HHHHHH
Q 024273 219 AQYINI 224 (270)
Q Consensus 219 v~~i~~ 224 (270)
+..+..
T Consensus 127 l~~l~~ 132 (176)
T PHA01631 127 LPYLEY 132 (176)
T ss_pred hHHHHH
Confidence 987743
No 77
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=21.22 E-value=3.3e+02 Score=23.98 Aligned_cols=83 Identities=13% Similarity=0.095 Sum_probs=46.1
Q ss_pred HHHHHHhhhc---CCceEEEEecCceeeChHHHHHHhhhcCCCCce---EEEEeecCcceecCCCc---eeecCccccCC
Q 024273 129 KFFFSTAVQI---WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESA---YIGCMKSGDVVTEEGRQ---WYEPEWWKFGD 199 (270)
Q Consensus 129 l~~~~w~~~~---~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~---y~G~~~~~~~ir~~~~k---w~~~~~~~~~~ 199 (270)
-.+++|+.+| ...--|.++|||.-.+++-+ +.+++.+.-.-- .+|......|+.+ ++| |+.... +
T Consensus 81 n~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF-~emR~i~~vg~WPVglvg~~~vegP~c~-~gkV~gw~~~w~----~ 154 (223)
T cd00218 81 NLALRWIREHLSAKLDGVVYFADDDNTYDLELF-EEMRKIKRVGVWPVGLVGGLRVEGPVCE-NGKVVGWHTAWK----P 154 (223)
T ss_pred HHHHHHHHhccccCcceEEEEccCCCcccHHHH-HHHhccCeeeEEEeeeecCceeeccEee-CCeEeEEecCCC----C
Confidence 3889999888 45677889999998887654 447653211111 2222222234443 343 665431 2
Q ss_pred CCCCCCCCcCCeeeeCHHHH
Q 024273 200 GKSYFRHAAGSIFVLSRNLA 219 (270)
Q Consensus 200 ~~~yP~y~~G~~YilS~dlv 219 (270)
...||- .=+||+++..++
T Consensus 155 ~R~f~i--dmAGFA~n~~ll 172 (223)
T cd00218 155 ERPFPI--DMAGFAFNSKLL 172 (223)
T ss_pred CCCCcc--eeeeEEEehhhh
Confidence 223442 235677777665
No 78
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=20.93 E-value=3.2e+02 Score=19.53 Aligned_cols=72 Identities=14% Similarity=0.182 Sum_probs=38.3
Q ss_pred cCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhc-CCceEEEEecCceeeChH
Q 024273 78 ERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQI-WDAEFYVKVDDNIDLDLE 156 (270)
Q Consensus 78 ~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~-~~~~fvlK~DDD~fvn~~ 156 (270)
..|+.-++++-..++.+ ..++-++ +.++-+. .....+..-... ...++.+.+. ..++|++.+|-|=|+.++
T Consensus 16 ~lG~d~i~i~d~~s~D~---t~~~l~~---~~~v~i~-~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~ 87 (97)
T PF13704_consen 16 ALGVDHIYIYDDGSTDG---TREILRA---LPGVGII-RWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPP 87 (97)
T ss_pred HcCCCEEEEEECCCCcc---HHHHHHh---CCCcEEE-EeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecC
Confidence 34666555544332211 2233333 3444433 244555432333 3344444444 689999999999998765
Q ss_pred H
Q 024273 157 G 157 (270)
Q Consensus 157 ~ 157 (270)
.
T Consensus 88 ~ 88 (97)
T PF13704_consen 88 P 88 (97)
T ss_pred C
Confidence 4
No 79
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=20.72 E-value=2e+02 Score=28.01 Aligned_cols=109 Identities=17% Similarity=0.084 Sum_probs=61.6
Q ss_pred hcCccccccccCCCCCCCceeEEEEEEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHH
Q 024273 24 SQGYLKNQLLQSGSSSGKKLLAVIGVYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDA 103 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~k~~lli~V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~ 103 (270)
--|++++++. ||.++.|-+-+.-++..--...|+ |...... + ...|++.|..
T Consensus 21 Flg~le~~Dy-------pk~r~aiw~~~dh~~d~~ie~fre-WL~nv~~---~-y~~V~~e~~~---------------- 72 (568)
T KOG4179|consen 21 FLGELEEGDY-------PKIRPAIWIGVDHEHDHAIEYFRE-WLENVGD---L-YHRVKWEPFI---------------- 72 (568)
T ss_pred ccCChhccCC-------cccccceEEecCccccchHHHHHH-HHHhcCC---c-cceeEEEecC----------------
Confidence 3577777777 666666766666665555666666 7764420 1 2335555442
Q ss_pred hhhhCCCeeeeCCCcccCCC--chHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHh
Q 024273 104 ENRETKDFLILEGHEEAQEE--LPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLL 162 (270)
Q Consensus 104 E~~~~~DIi~l~d~~Dsy~n--lt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L 162 (270)
|.+.|-|+..-..-.++... +.+| -.+++|+.+. -++|++..|.|+++--..-+..|
T Consensus 73 e~~s~~d~~~pk~W~~sr~q~lm~lK-eea~~~~r~~-~adyilf~d~d~lLts~dTl~ll 131 (568)
T KOG4179|consen 73 EPKSYPDEHGPKHWPDSRFQHLMSLK-EEALNWARSG-WADYILFKDEDNLLTSGDTLPLL 131 (568)
T ss_pred CccccCcccCCccCchHHHHHHHHHH-HHHHHHHHhh-hcceeEEeehhheeeCCchHhHH
Confidence 22356666622222332111 2333 4566777653 58899999999998544433333
Done!