Query 024273
Match_columns 270
No_of_seqs 119 out of 1132
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 05:23:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024273.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024273hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 3.3E-26 1.1E-30 205.9 14.9 196 40-261 10-217 (280)
2 1qg8_A Protein (spore coat pol 95.1 1.2 4.2E-05 37.0 16.0 157 80-246 30-200 (255)
3 1xhb_A Polypeptide N-acetylgal 94.4 1 3.5E-05 41.7 15.0 158 82-247 63-244 (472)
4 2d7i_A Polypeptide N-acetylgal 94.2 1.9 6.4E-05 41.4 16.5 159 82-248 146-325 (570)
5 2ffu_A Ppgalnact-2, polypeptid 93.9 2.2 7.4E-05 40.0 16.2 155 81-247 99-276 (501)
6 4fix_A UDP-galactofuranosyl tr 92.6 4.1 0.00014 40.0 16.4 118 129-248 257-404 (657)
7 2z86_A Chondroitin synthase; G 92.4 4.1 0.00014 39.0 15.9 44 206-249 275-318 (625)
8 3bcv_A Putative glycosyltransf 91.4 4 0.00014 33.4 12.8 164 80-254 34-220 (240)
9 4hg6_A Cellulose synthase subu 83.9 12 0.00039 37.6 12.8 131 125-259 224-368 (802)
10 2z86_A Chondroitin synthase; G 83.8 14 0.00049 35.2 13.0 152 80-247 404-559 (625)
11 2bo4_A Mannosylglycerate synth 44.7 34 0.0012 31.3 5.9 142 80-224 28-179 (397)
12 1fo8_A Alpha-1,3-mannosyl-glyc 39.5 2E+02 0.007 25.5 13.6 87 130-223 89-178 (343)
13 2fy7_A Beta-1,4-galactosyltran 35.8 1.5E+02 0.0053 25.3 8.5 89 137-247 126-214 (287)
14 2c0n_A A197; thermophil protei 34.3 2E+02 0.0068 23.8 11.1 99 138-244 51-159 (203)
15 1p22_C Beta-catenin, Pro2286; 26.1 25 0.00087 19.4 1.0 16 24-40 9-24 (26)
16 1omz_A Alpha-1,4-N-acetylhexos 25.8 71 0.0024 28.0 4.5 39 139-177 105-143 (293)
17 2lnd_A De novo designed protei 21.1 27 0.00093 24.8 0.7 69 49-135 31-102 (112)
18 3ckj_A Putative uncharacterize 21.0 3.9E+02 0.013 22.7 9.8 89 134-222 125-228 (329)
19 1v84_A Galactosylgalactosylxyl 20.0 2.1E+02 0.0071 24.5 6.2 85 128-219 89-184 (253)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.94 E-value=3.3e-26 Score=205.86 Aligned_cols=196 Identities=15% Similarity=0.172 Sum_probs=131.7
Q ss_pred CCceeEEEEEEcCCCC-hhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCc
Q 024273 40 GKKLLAVIGVYTGFGS-HLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHE 118 (270)
Q Consensus 40 ~~k~~lli~V~S~~~~-~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~ 118 (270)
+..-.|+|+|+|++++ .+|+.+||+||++... .. .|+.+... ++.+... ..++++ ..++.
T Consensus 10 ~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~------~~----~fifsd~~------d~~l~~~--~~~~~~-~~~~~ 70 (280)
T 2j0a_A 10 LQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIR------QQ----TFIFTDSP------DERLQER--LGPHLV-VTQCS 70 (280)
T ss_dssp CCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSG------GG----EEEEESSC------CHHHHHH--HGGGEE-ECCC-
T ss_pred CCcccEEEEEECcHHHHHHHHHHHHHHHhccCC------Cc----eEEEcCCC------ccccccc--ccccce-ecccc
Confidence 3446788999999985 5688999999998653 11 34333221 1233322 244566 44553
Q ss_pred --ccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccc
Q 024273 119 --EAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWK 196 (270)
Q Consensus 119 --Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~ 196 (270)
+++.+++.|+...+++..+ ++++|++|+|||+||++++|.++|..+++.+++|+|......+++. +++.+.+
T Consensus 71 ~~~~~~~l~~K~~~~~~~~l~-~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~~---~~~~~~~-- 144 (280)
T 2j0a_A 71 AEHSHPALSCKMAAEFDAFLV-SGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIHA---SELQSKQ-- 144 (280)
T ss_dssp ------CCCHHHHHHHHHHHH-HTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC------------------
T ss_pred ccccccchHHHHHHHHHHHhC-CCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCccccc---cccCccc--
Confidence 4677899999999997653 5899999999999999999999999998889999999876566552 3344432
Q ss_pred cCCCCCCCCCC-cCCeeeeCHHHHHHHHHhcccc-------CCCCCChhhHHHHhh-cCCCeEecCCCcccCCC
Q 024273 197 FGDGKSYFRHA-AGSIFVLSRNLAQYININSASL-------KTYAHDDTSVGSWMM-GVRATYKDDNRFCCSSI 261 (270)
Q Consensus 197 ~~~~~~yP~y~-~G~~YilS~dlv~~i~~~~~~~-------~~~~~EDv~vG~~l~-~~~v~~~~~~~f~~~~~ 261 (270)
.++...| +|| +|+||+||++++++|+...... .....||+++|.|+. .+||.+.+.++|.....
T Consensus 145 ~~~~~~~-~y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~~ 217 (280)
T 2j0a_A 145 RTKLVRF-WFATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLE 217 (280)
T ss_dssp ------C-CEECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSSS
T ss_pred ccccccc-CcccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCCc
Confidence 1122234 466 5679999999999998643222 223568999999998 99999999999986443
No 2
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=95.09 E-value=1.2 Score=37.03 Aligned_cols=157 Identities=7% Similarity=-0.010 Sum_probs=82.1
Q ss_pred CeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccC-----CCchHHHHHHHHHhhhcCCceEEEEecCceeeC
Q 024273 80 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQ-----EELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLD 154 (270)
Q Consensus 80 ~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy-----~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn 154 (270)
.+.++.+...+.+ -..++.++......|.++. ....- .|. -.-.++..+.+..+.+|++..|+|.++.
T Consensus 30 ~~eiivvDd~S~d----~t~~~~~~~~~~~~i~~i~-~~~~~~~~~~~n~--G~~~a~N~gi~~a~g~~i~~lD~Dd~~~ 102 (255)
T 1qg8_A 30 DFELFIMDDNSNE----ETLNVIRPFLNDNRVRFYQ-SDISGVKERTEKT--RYAALINQAIEMAEGEYITYATDDNIYM 102 (255)
T ss_dssp CEEEEEEECSCCH----HHHHHHGGGGGSTTEEEEE-CCCCSHHHHHSSC--HHHHHHHHHHHHCCCSEEEEEETTEEEC
T ss_pred ceEEEEEECCCCc----hHHHHHHHHhhcCCEEEEe-ccccccccccccc--CHHHHHHHHHHHcCCCEEEEeCCCCccC
Confidence 4566666654422 1234444544455665442 11000 232 2334455555666789999999999999
Q ss_pred hHHHHHHhhhcC--CCCceEEEEeecC--cceecCCCceeecCccccCCCCCCCCCCcCCeeeeCHHHHHHHH-Hhc---
Q 024273 155 LEGLIGLLDRSR--GQESAYIGCMKSG--DVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSRNLAQYIN-INS--- 226 (270)
Q Consensus 155 ~~~L~~~L~~~~--~~~~~y~G~~~~~--~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~YilS~dlv~~i~-~~~--- 226 (270)
++.|...+.... +.-.+..|....- .........+..+.. .+. .....++.|++.++.+++++.+- ...
T Consensus 103 ~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~ 179 (255)
T 1qg8_A 103 PDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIVKETVRPAA-QVT--WNAPCAIDHCSVMHRYSVLEKVKEKFGSYW 179 (255)
T ss_dssp TTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEEEEEEECCC-SCB--SCCTTTSCGGGEEEETHHHHHHHHHHSSSS
T ss_pred hHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcchhhccCchH-HHH--HhhcCCCccceEEEEHHHHHhhcccccccc
Confidence 887777765542 2334444443210 000000011112221 111 12334567899999999999875 330
Q ss_pred -cccCCCCCChhhHHHHhhcC
Q 024273 227 -ASLKTYAHDDTSVGSWMMGV 246 (270)
Q Consensus 227 -~~~~~~~~EDv~vG~~l~~~ 246 (270)
........||..+..-+...
T Consensus 180 ~~~~~~~~~eD~~~~~r~~~~ 200 (255)
T 1qg8_A 180 DESPAFYRIGDARFFWRVNHF 200 (255)
T ss_dssp CCCGGGSTTHHHHHHHHHTTT
T ss_pred cCCcccchHHHHHHHHHHHHh
Confidence 11223468998887766543
No 3
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=94.40 E-value=1 Score=41.74 Aligned_cols=158 Identities=16% Similarity=0.173 Sum_probs=80.5
Q ss_pred EEEEEeeecCCCCchhhhhhHHhhhhCC-CeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHH
Q 024273 82 VIRFVIGRSANRGDSLDRKIDAENRETK-DFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 160 (270)
Q Consensus 82 ~v~FvvG~~~~~~~~~~~~l~~E~~~~~-DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~ 160 (270)
+++.|...+.+ ....+.+++-.+.+. .+.++. ..+ |.. .-.+.....+....+|++..|+|+.+.++-|..
T Consensus 63 EIIvVDd~S~d--~~t~~~l~~~~~~~~~~v~vi~-~~~---n~G--~~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 63 EIVLVDDASER--DFLKRPLESYVKKLKVPVHVIR-MEQ---RSG--LIRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEECSCCC--GGGTHHHHHHHHSSSSCEEEEE-CSS---CCC--HHHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred EEEEEECCCCc--HHHHHHHHHHHHHCCCcEEEEE-CCC---CCC--hHHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 55555544332 112334444445666 455442 222 221 223334444455689999999999999887777
Q ss_pred HhhhcCCCC-ceEEEEee--cCcce-ecCCC-------------ceee-cCc--c---ccCCCCCCCCCCcCCeeeeCHH
Q 024273 161 LLDRSRGQE-SAYIGCMK--SGDVV-TEEGR-------------QWYE-PEW--W---KFGDGKSYFRHAAGSIFVLSRN 217 (270)
Q Consensus 161 ~L~~~~~~~-~~y~G~~~--~~~~i-r~~~~-------------kw~~-~~~--~---~~~~~~~yP~y~~G~~YilS~d 217 (270)
.+......+ .+..|... ..... ....+ +|.. +.. . .........+++.|++++++++
T Consensus 135 ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 214 (472)
T 1xhb_A 135 LLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRD 214 (472)
T ss_dssp HHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHH
T ss_pred HHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHH
Confidence 776542222 23333321 01000 00000 0100 000 0 0000123345788999999999
Q ss_pred HHHHHHHhccccCCCCCChhhHHHHhhcCC
Q 024273 218 LAQYININSASLKTYAHDDTSVGSWMMGVR 247 (270)
Q Consensus 218 lv~~i~~~~~~~~~~~~EDv~vG~~l~~~~ 247 (270)
+++.+-.-...+..+..||+-++.-+...|
T Consensus 215 ~~~~iGgfde~~~~~g~ED~dl~~R~~~~G 244 (472)
T 1xhb_A 215 YFQEIGTYDAGMDIWGGENLEISFRIWQCG 244 (472)
T ss_dssp HHHHTTSCCTTSCTTCCCCSHHHHHHHHTT
T ss_pred HHHHcCCCCCcccccCchhHHHHHHHHhcC
Confidence 999875433334445689998877665444
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=94.15 E-value=1.9 Score=41.44 Aligned_cols=159 Identities=15% Similarity=0.127 Sum_probs=79.8
Q ss_pred EEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHH
Q 024273 82 VIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGL 161 (270)
Q Consensus 82 ~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~ 161 (270)
.++.|...+.+ ..+.+.+++..+.+..|.++. ..++ ..+..- .....+....+|++..|+|+.+.++-|...
T Consensus 146 EIIVVDDgS~D--~tl~~~l~~~~~~~~~v~vi~-~~~n-~G~~~A----~N~G~~~A~gd~i~fLD~D~~~~p~~L~~l 217 (570)
T 2d7i_A 146 EIVLVDDFSDR--EHLKKPLEDYMALFPSVRILR-TKKR-EGLIRT----RMLGASVATGDVITFLDSHCEANVNWLPPL 217 (570)
T ss_dssp EEEEEECSCCC--GGGTHHHHHHHTTSTTEEEEE-CSSC-CCHHHH----HHHHHHHCCSSEEEECCSSEEECTTCSHHH
T ss_pred EEEEEECCCCc--HHHHHHHHHHHHhCCeEEEEE-CCCC-CCHHHH----HHHHHHhcCCCEEEEEcCCccccccHHHHH
Confidence 55555544432 121334555555666666543 2221 223333 333333446799999999999987766666
Q ss_pred hhhcCCCCceEEEEee---cCcc--eecC--CC-----ce---e--ecC----ccccCCCCCCCCCCcCCeeeeCHHHHH
Q 024273 162 LDRSRGQESAYIGCMK---SGDV--VTEE--GR-----QW---Y--EPE----WWKFGDGKSYFRHAAGSIFVLSRNLAQ 220 (270)
Q Consensus 162 L~~~~~~~~~y~G~~~---~~~~--ir~~--~~-----kw---~--~~~----~~~~~~~~~yP~y~~G~~YilS~dlv~ 220 (270)
+......+...++... .+.. .+.. .+ .| + .+. ....+......+++.|++.++++++.+
T Consensus 218 l~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~ 297 (570)
T 2d7i_A 218 LDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFW 297 (570)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHH
T ss_pred HHHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHH
Confidence 6544222333333221 1100 0000 00 01 0 000 000000112234678999999999999
Q ss_pred HHHHhccccCCCCCChhhHHHHhhcCCC
Q 024273 221 YININSASLKTYAHDDTSVGSWMMGVRA 248 (270)
Q Consensus 221 ~i~~~~~~~~~~~~EDv~vG~~l~~~~v 248 (270)
.+-.-...+..+..||+-+..-+...|.
T Consensus 298 ~iGgfDe~~~~~g~ED~dl~~Rl~~~G~ 325 (570)
T 2d7i_A 298 ELGGYDPGLEIWGGEQYEISFKVWMCGG 325 (570)
T ss_dssp HTTSSCTTCCSSSSHHHHHHHHHHHTTC
T ss_pred hcCCCCCcccccCcchHHHHHHHHhCCC
Confidence 8754333344445799998776655443
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=93.88 E-value=2.2 Score=40.00 Aligned_cols=155 Identities=11% Similarity=0.024 Sum_probs=79.2
Q ss_pred eEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHH
Q 024273 81 VVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIG 160 (270)
Q Consensus 81 v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~ 160 (270)
.++++|-..+.+. .+.+..+.+..|.++. ... |.- .-.+.....+....+|++.+|+|..+.++-|..
T Consensus 99 ~EIIvVDDgS~D~------t~~~~~~~~~~v~vi~-~~~---n~G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~ 166 (501)
T 2ffu_A 99 KEIILVDDYSNDP------EDGALLGKIEKVRVLR-NDR---REG--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEP 166 (501)
T ss_dssp EEEEEEECSCSCT------HHHHGGGGBTTEEEEE-CSS---CCH--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHH
T ss_pred eeEEEEECCCCch------HHHHHHhcCCCEEEEE-CCC---CcC--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHH
Confidence 3566665544321 1222334555666442 222 222 233444455555689999999999999887777
Q ss_pred HhhhcCCCC-ceEEEEee--cCcce---------ec-----CCCcee-ecCc---cc--cCCCCCCCCCCcCCeeeeCHH
Q 024273 161 LLDRSRGQE-SAYIGCMK--SGDVV---------TE-----EGRQWY-EPEW---WK--FGDGKSYFRHAAGSIFVLSRN 217 (270)
Q Consensus 161 ~L~~~~~~~-~~y~G~~~--~~~~i---------r~-----~~~kw~-~~~~---~~--~~~~~~yP~y~~G~~YilS~d 217 (270)
.+......+ .+..+... ..... +. ..-+|. .+.. .. ........+++.|++.+++++
T Consensus 167 ll~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 246 (501)
T 2ffu_A 167 LLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKF 246 (501)
T ss_dssp HHHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHH
T ss_pred HHHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHH
Confidence 776542222 23333221 00000 00 000110 0000 00 000112345678999999999
Q ss_pred HHHHHHHhccccCCCCCChhhHHHHhhcCC
Q 024273 218 LAQYININSASLKTYAHDDTSVGSWMMGVR 247 (270)
Q Consensus 218 lv~~i~~~~~~~~~~~~EDv~vG~~l~~~~ 247 (270)
+++.+-.-...+..+..||+-+..-+...|
T Consensus 247 ~~~~iGgfde~~~~~g~ED~dl~~Rl~~~G 276 (501)
T 2ffu_A 247 YFEELGKYDMMMDVWGGENLEISFRVWQCG 276 (501)
T ss_dssp HHHHTTCCCTTCCSSSSHHHHHHHHHHHTT
T ss_pred HHHHhCCCCccccccCcchHHHHHHHHhcC
Confidence 999885433334445589998877555444
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=92.61 E-value=4.1 Score=39.97 Aligned_cols=118 Identities=14% Similarity=0.075 Sum_probs=66.1
Q ss_pred HHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhcCC-CCceEEE-Eeec-C-cceecCCCceeecCc-------cc-
Q 024273 129 KFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRSRG-QESAYIG-CMKS-G-DVVTEEGRQWYEPEW-------WK- 196 (270)
Q Consensus 129 l~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~-~~~~y~G-~~~~-~-~~ir~~~~kw~~~~~-------~~- 196 (270)
-.+++.+....+++|++..|||+.+.++.|...+..... .....+| .+.. . +......+.|..... ..
T Consensus 257 N~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 336 (657)
T 4fix_A 257 SRVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAE 336 (657)
T ss_dssp HHHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCC
T ss_pred HHHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEecccccccccccccc
Confidence 345666655447899999999999998877777654321 1223444 3321 1 111111111111000 00
Q ss_pred ----c--------------CCCCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCC
Q 024273 197 ----F--------------GDGKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRA 248 (270)
Q Consensus 197 ----~--------------~~~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v 248 (270)
+ +.......|++|++.++.+++++.+--... -....||+-++.=+...|.
T Consensus 337 ~~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~--~F~~~ED~Dl~lR~~~~G~ 404 (657)
T 4fix_A 337 YDHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLP--LFIKWDDADYGLRAAEHGY 404 (657)
T ss_dssp SCEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCS--CSSSSHHHHHHHHHHHTTC
T ss_pred ccccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChh--HhccCcHHHHHHHHHHcCC
Confidence 0 011123457899999999999998743221 2345799999887665543
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=92.36 E-value=4.1 Score=39.01 Aligned_cols=44 Identities=7% Similarity=0.096 Sum_probs=31.2
Q ss_pred CCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe
Q 024273 206 HAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT 249 (270)
Q Consensus 206 y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~ 249 (270)
++.|++.++++++++.+--....+..+..||.-++.-+...|.+
T Consensus 275 ~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~ 318 (625)
T 2z86_A 275 FFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREGCY 318 (625)
T ss_dssp GCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTTCE
T ss_pred EEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCCce
Confidence 57899999999999987433333333447999998877655543
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=91.36 E-value=4 Score=33.37 Aligned_cols=164 Identities=10% Similarity=0.079 Sum_probs=77.6
Q ss_pred CeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHH
Q 024273 80 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 159 (270)
Q Consensus 80 ~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~ 159 (270)
.+.++.|-..+.+. ..+.+++-.+++..|.++. .+ |.. .-.+...+.+..+.+|++.+|+|.++.++.|.
T Consensus 34 ~~eiIvvDd~S~d~---t~~~~~~~~~~~~~i~~i~--~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~ 103 (240)
T 3bcv_A 34 DIEIILIDDESPDN---CPKICDDYAAQYPNIKVIH--KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYM 103 (240)
T ss_dssp SEEEEEEECCCSSS---HHHHHHHHHHHCSSEEEEE--CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHH
T ss_pred CeEEEEEECCCCcC---HHHHHHHHHhhCCCEEEEE--CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHH
Confidence 45666666544332 2334444445566676542 22 221 22334444455567999999999999988777
Q ss_pred HHhhhcCC-CCceEEEEee-c---Cc---ceec--CCCceeecC----cc-ccCCCC-CC---C-CCCcCCeeeeCHHHH
Q 024273 160 GLLDRSRG-QESAYIGCMK-S---GD---VVTE--EGRQWYEPE----WW-KFGDGK-SY---F-RHAAGSIFVLSRNLA 219 (270)
Q Consensus 160 ~~L~~~~~-~~~~y~G~~~-~---~~---~ir~--~~~kw~~~~----~~-~~~~~~-~y---P-~y~~G~~YilS~dlv 219 (270)
..+..... ...+.+|... . +. .+.. ....++... .. .+.... .+ + ...+|++.++.++++
T Consensus 104 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 183 (240)
T 3bcv_A 104 TMYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQVSAKVVLYRRNLI 183 (240)
T ss_dssp HHHHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTSSCHHHHHHHHHHHTCSCEEEEHHHH
T ss_pred HHHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhhcchhhccccccccchhheeeeHHHH
Confidence 77655422 2334433221 1 11 0000 000111100 00 000000 00 0 013578899999999
Q ss_pred HHHH-HhccccCCCCCChhhHHHHhhcC--CCeEecCC
Q 024273 220 QYIN-INSASLKTYAHDDTSVGSWMMGV--RATYKDDN 254 (270)
Q Consensus 220 ~~i~-~~~~~~~~~~~EDv~vG~~l~~~--~v~~~~~~ 254 (270)
+.+- ...... .+..||..+..-+... .+..++..
T Consensus 184 ~~~g~~f~~~~-~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 184 EKKHLRFVSER-ILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHTTCCCCCTT-TCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHcCCccCCCC-CccCCCHHHHHHHHHhCCEEEEECCC
Confidence 8853 211111 2346999988766544 34445544
No 9
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=83.86 E-value=12 Score=37.56 Aligned_cols=131 Identities=15% Similarity=-0.057 Sum_probs=69.7
Q ss_pred hHHHHHHHHHhhhcCCceEEEEecCceeeChHHHHHHhhhc--CCCCceEEEEeec-C-cceecCCCcee-ec-CccccC
Q 024273 125 PKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLIGLLDRS--RGQESAYIGCMKS-G-DVVTEEGRQWY-EP-EWWKFG 198 (270)
Q Consensus 125 t~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~~~L~~~--~~~~~~y~G~~~~-~-~~ir~~~~kw~-~~-~~~~~~ 198 (270)
..|.- .++.+.+..+.+|++.+|+|+.+.++.|...+... ++.-....|.... + .+.....+.+. .+ ....++
T Consensus 224 ~GKa~-alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (802)
T 4hg6_A 224 HAKAG-NMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFY 302 (802)
T ss_dssp SHHHH-HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHH
T ss_pred CcchH-HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHH
Confidence 35554 35555556678999999999999988887777654 2222233332211 1 11000000000 00 000000
Q ss_pred C------CCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCChhhHHHHhhcCCCe--EecCCCcccC
Q 024273 199 D------GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHDDTSVGSWMMGVRAT--YKDDNRFCCS 259 (270)
Q Consensus 199 ~------~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~v~--~~~~~~f~~~ 259 (270)
+ ...-.+++.|++.++.+++++.+-.-.. ....||..++.-+...|.+ .+++....+.
T Consensus 303 ~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~~---~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~~ 368 (802)
T 4hg6_A 303 GKIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFAG---ETITEDAETALEIHSRGWKSLYIDRAMIAGL 368 (802)
T ss_dssp HTHHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCCC---SSSSHHHHHHHHHHTTTCCEEECCCCCEEEC
T ss_pred HHHHhhHhhcCCceecccchhhhHHHHHHcCCcCC---CCcchHHHHHHHHHHcCCeEEEecCCEEEec
Confidence 0 0011234679999999999998732221 2235999999888765544 4555544443
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=83.80 E-value=14 Score=35.18 Aligned_cols=152 Identities=9% Similarity=-0.012 Sum_probs=76.3
Q ss_pred CeEEEEEeeecCCCCchhhhhhHHhhhhCCCeeeeCCCcccCCCchHHHHHHHHHhhhcCCceEEEEecCceeeChHHHH
Q 024273 80 GVVIRFVIGRSANRGDSLDRKIDAENRETKDFLILEGHEEAQEELPKKAKFFFSTAVQIWDAEFYVKVDDNIDLDLEGLI 159 (270)
Q Consensus 80 ~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~DIi~l~d~~Dsy~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~fvn~~~L~ 159 (270)
.+.++.+-..+.+. ..+.+.+-.+.+..|.++. .+ |.. .-.++....+..+.+|++..|+|.++.++.|.
T Consensus 404 ~~eiivvdd~S~d~---t~~~~~~~~~~~~~i~~~~--~~---n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~ 473 (625)
T 2z86_A 404 DLEVCICDDGSTDD---TLRILQEHYANHPRVRFIS--QK---NKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVE 473 (625)
T ss_dssp SEEEEEEEESCSSS---HHHHHHHHHTTCTTEEEEE--EC---CCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHH
T ss_pred CeEEEEEECcCChh---HHHHHHHHHhhCCcEEEEe--CC---CCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHH
Confidence 45666666554332 2233443344565665441 11 221 22334444444567999999999999988887
Q ss_pred HHhhhc--CCCCceEEEEeecCcceecCCCceeecCc-cccCC-CCCCCCCCcCCeeeeCHHHHHHHHHhccccCCCCCC
Q 024273 160 GLLDRS--RGQESAYIGCMKSGDVVTEEGRQWYEPEW-WKFGD-GKSYFRHAAGSIFVLSRNLAQYININSASLKTYAHD 235 (270)
Q Consensus 160 ~~L~~~--~~~~~~y~G~~~~~~~ir~~~~kw~~~~~-~~~~~-~~~yP~y~~G~~YilS~dlv~~i~~~~~~~~~~~~E 235 (270)
..+... .+.-.+..+... ..+..+++....+ +..+. ......++.|++.++.+++.+.+-.-... ....|
T Consensus 474 ~~~~~~~~~~~~~~v~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ggfd~~--~~~~e 547 (625)
T 2z86_A 474 LCLDEFRKDLSLACVYTTNR----NIDREGNLISNGYNWPIYSREKLTSAMICHHFRMFTARAWNLTEGFNES--ISNAV 547 (625)
T ss_dssp HHHHHHHHCTTCSEEEEEEE----EECTTSCEEEECCCCSSCCHHHHTTSCCCCSCEEEEHHHHTTTTCCCSS--CSSCH
T ss_pred HHHHHHHhCCCeeEEEeeeE----EECCCCCEeccCcccccCCHHHHhhcccCCceEEEEHHHHHHhCCCCCc--cCChH
Confidence 777543 222223333221 1112222211100 00000 01122345678889999887654322221 23579
Q ss_pred hhhHHHHhhcCC
Q 024273 236 DTSVGSWMMGVR 247 (270)
Q Consensus 236 Dv~vG~~l~~~~ 247 (270)
|.-+..-+...+
T Consensus 548 D~dl~~r~~~~g 559 (625)
T 2z86_A 548 DYDMYLKLSEVG 559 (625)
T ss_dssp HHHHHHHHTTTS
T ss_pred HHHHHHHHHHhC
Confidence 998877665554
No 11
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=44.70 E-value=34 Score=31.25 Aligned_cols=142 Identities=10% Similarity=-0.039 Sum_probs=72.5
Q ss_pred CeEEEEEeeecCCCCchhhhhhHHhhh-hCCCeeeeCCCcc-c--CCCchHHHHHHHHHhhhcCCceEEEEecCcee-eC
Q 024273 80 GVVIRFVIGRSANRGDSLDRKIDAENR-ETKDFLILEGHEE-A--QEELPKKAKFFFSTAVQIWDAEFYVKVDDNID-LD 154 (270)
Q Consensus 80 ~v~v~FvvG~~~~~~~~~~~~l~~E~~-~~~DIi~l~d~~D-s--y~nlt~Ktl~~~~w~~~~~~~~fvlK~DDD~f-vn 154 (270)
...+++|-+.|.+...++-+++..+.. .++.-++.--... . -.....=...+++|+.+..+.++++.+|-|.- .+
T Consensus 28 ~~EIIVVDDGStD~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~~~ 107 (397)
T 2bo4_A 28 RVHEVLCIGYERDQTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFG 107 (397)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSSCC
T ss_pred CeEEEEEECcCCccHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCCC
Confidence 357888888765432112222222333 3444332100110 1 13345556778888763457889999999995 78
Q ss_pred hHHHHHHhhhcCCCCceEEEEeecC---cceecCCCceeecCccccCCC--CCCCCCCcCCeeeeCHHHHHHHHH
Q 024273 155 LEGLIGLLDRSRGQESAYIGCMKSG---DVVTEEGRQWYEPEWWKFGDG--KSYFRHAAGSIFVLSRNLAQYINI 224 (270)
Q Consensus 155 ~~~L~~~L~~~~~~~~~y~G~~~~~---~~ir~~~~kw~~~~~~~~~~~--~~yP~y~~G~~YilS~dlv~~i~~ 224 (270)
+.-+..++......-++.+|..... ..+.+...++.... +|+. ........++.+++++++++.+..
T Consensus 108 P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~---~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~ 179 (397)
T 2bo4_A 108 PDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFAL---LWPHTELSWIEQPLGGELLMRREVAAMLYE 179 (397)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHH---HCTTSSGGGCSCTTCCCEEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHH---HHHHhhccccccCCcccEEEeHHHHHHHhh
Confidence 7777776665433346677753211 11111111110000 1110 012223356778999999998854
No 12
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=39.46 E-value=2e+02 Score=25.46 Aligned_cols=87 Identities=10% Similarity=0.066 Sum_probs=44.0
Q ss_pred HHHHHhhhcCCceEEEEecCceeeChHHH---HHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccCCCCCCCCC
Q 024273 130 FFFSTAVQIWDAEFYVKVDDNIDLDLEGL---IGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRH 206 (270)
Q Consensus 130 ~~~~w~~~~~~~~fvlK~DDD~fvn~~~L---~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y 206 (270)
.++.++.+..+.++++.+|||+.+.++=+ .+.|..+...+++++-+-............ ..+. .+ .+-.|
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~~ISa~n~~g~~~~~~~-~~~~--~l----yrs~~ 161 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLWCVSAWNDNGKEQMVDS-SKPE--LL----YRTDF 161 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEEEEESCCTTCBGGGSCT-TCTT--CE----EEESS
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEEEEecccCccccccccc-cCcc--eE----EeecC
Confidence 34444444347999999999999986544 333332233344443111111110000000 0011 01 12335
Q ss_pred CcCCeeeeCHHHHHHHH
Q 024273 207 AAGSIFVLSRNLAQYIN 223 (270)
Q Consensus 207 ~~G~~YilS~dlv~~i~ 223 (270)
..|.|+.+++++-+.+-
T Consensus 162 f~~wGWa~wr~~W~e~~ 178 (343)
T 1fo8_A 162 FPGLGWLLLAELWAELE 178 (343)
T ss_dssp CCCSSEEEEHHHHHHHG
T ss_pred CCchhhhhcHHHHHHHh
Confidence 56889999999998653
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=35.81 E-value=1.5e+02 Score=25.32 Aligned_cols=89 Identities=16% Similarity=0.069 Sum_probs=49.5
Q ss_pred hcCCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeecCcceecCCCceeecCccccCCCCCCCCCCcCCeeeeCH
Q 024273 137 QIWDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKSGDVVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFVLSR 216 (270)
Q Consensus 137 ~~~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~YilS~ 216 (270)
+..+.+|++.+|+|+.+..+.+. ......+. .+ + +..... .+ . ..| ..+.|+..++.+
T Consensus 126 ~~A~gd~i~flD~D~i~~~d~~~---~~~~~~p~-~~-------------~-~~~~~~-~~-~-~~~-~~~~G~~~~~rr 183 (287)
T 2fy7_A 126 KDYDYTCFVFSDVDLIPMNDHNA---YRCFSQPR-HI-------------S-VAMDKF-GF-S-LPY-VQYFGGVSALSK 183 (287)
T ss_dssp HHSCCCEEEEECTTEEESBTTSC---CSCCSSCE-EC-------------C-CEEGGG-TT-S-CSS-TTCCCSEEEEEH
T ss_pred HhCCCCEEEEECCCcccCCCcce---EecCCCCc-eE-------------E-Eeeccc-cc-C-CCc-CceeeeEEEEEH
Confidence 44678999999999999888521 00000000 00 0 001110 01 1 012 235688999999
Q ss_pred HHHHHHHHhccccCCCCCChhhHHHHhhcCC
Q 024273 217 NLAQYININSASLKTYAHDDTSVGSWMMGVR 247 (270)
Q Consensus 217 dlv~~i~~~~~~~~~~~~EDv~vG~~l~~~~ 247 (270)
++...+--....+..+..||+-++.=+...|
T Consensus 184 ~~f~~vgGFde~~~g~g~ED~Dl~~Rl~~~G 214 (287)
T 2fy7_A 184 QQFLTINGFPNNYWGWGGEDDDIFNRLVFRG 214 (287)
T ss_dssp HHHHHTTSCCSCCSSCSCHHHHHHHHHHHTT
T ss_pred HHHHHcCCCCccccccccchHHHHHHHHHcC
Confidence 9998874333333344579998877665444
No 14
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=34.31 E-value=2e+02 Score=23.80 Aligned_cols=99 Identities=13% Similarity=0.073 Sum_probs=58.6
Q ss_pred cCCceEEEEecCc---eeeChHHHHHHhhhcCCCCceEEEEeecCc-ceecCCCceeecCccccCCCCCCCCCCcCCeee
Q 024273 138 IWDAEFYVKVDDN---IDLDLEGLIGLLDRSRGQESAYIGCMKSGD-VVTEEGRQWYEPEWWKFGDGKSYFRHAAGSIFV 213 (270)
Q Consensus 138 ~~~~~fvlK~DDD---~fvn~~~L~~~L~~~~~~~~~y~G~~~~~~-~ir~~~~kw~~~~~~~~~~~~~yP~y~~G~~Yi 213 (270)
...+++++.+|-| +-.+++.+.++|.. ..++.+|...... .......+.|.-. +.+ .=-.||++|.-+
T Consensus 51 ~~~~dhllfIDAD~~~I~FdPe~V~rLl~~---g~DVV~GsYp~K~~~~~s~~a~~y~~~---i~~--~~V~d~~tGF~l 122 (203)
T 2c0n_A 51 MKDYDTLAFLDEDVVPIEIDFQKVEAKFNE---GYDVVCGYYYLKTLRGYSVYRKDWEKE---IFD--GEVNGCGLGFTF 122 (203)
T ss_dssp CTTCCEEEEECTTEEEEECCHHHHHHHHHH---TCSEEEEECBCTTSSSBSEESSSBCSS---CCC--EECSEECSSEEE
T ss_pred cCCCCEEEEEeCCCCccccCHHHHHHHHhC---CCCEEEEEeeccCCCccchHHHHHHHh---ccC--ceeeeccccEEE
Confidence 3578999999999 99999999999965 3468888663211 0000000111111 111 112478899999
Q ss_pred eCHHHHHHHHHhcc------ccCCCCCChhhHHHHhh
Q 024273 214 LSRNLAQYININSA------SLKTYAHDDTSVGSWMM 244 (270)
Q Consensus 214 lS~dlv~~i~~~~~------~~~~~~~EDv~vG~~l~ 244 (270)
++|.+++.|.+..- ..+..--||+++=.-+.
T Consensus 123 IkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F~~~~k 159 (203)
T 2c0n_A 123 IKREFLEKIKRPAFLAFKPIESPHWIGEDVYFFSTHK 159 (203)
T ss_dssp EEHHHHTTSCSSCCCC---------CCHHHHHHHHHC
T ss_pred EhHHHHHHHhhhhhhcCChhhhccccCCceEEEeccc
Confidence 99999998854311 11222348988844333
No 15
>1p22_C Beta-catenin, Pro2286; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} PDB: 2g57_A*
Probab=26.13 E-value=25 Score=19.35 Aligned_cols=16 Identities=31% Similarity=0.603 Sum_probs=12.3
Q ss_pred hcCccccccccCCCCCC
Q 024273 24 SQGYLKNQLLQSGSSSG 40 (270)
Q Consensus 24 ~~~~~~~~~~~~~~~~~ 40 (270)
.++|. |-+||||.++.
T Consensus 9 q~~y~-DSGI~SGatT~ 24 (26)
T 1p22_C 9 QQSYL-DSGIHSGATTT 24 (26)
T ss_pred hcCcc-ccccccCcccc
Confidence 46787 99999887653
No 16
>1omz_A Alpha-1,4-N-acetylhexosaminyltransferase EXTL2; rossmann fold, DXD motif; HET: UD2; 2.10A {Mus musculus} SCOP: c.68.1.15 PDB: 1omx_A* 1on6_A* 1on8_A*
Probab=25.76 E-value=71 Score=28.02 Aligned_cols=39 Identities=15% Similarity=0.157 Sum_probs=32.4
Q ss_pred CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEee
Q 024273 139 WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMK 177 (270)
Q Consensus 139 ~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~ 177 (270)
...+-|+-+|||+.++.+.|.....-++..++-++|..-
T Consensus 105 i~T~AVLslDDDv~l~~~el~faF~vWr~~PdRlVGf~~ 143 (293)
T 1omz_A 105 VETNAVLMVDDDTLISAQDLVFAFSIWQQFPDQIIGFVP 143 (293)
T ss_dssp CCSSEEEEECTTEEECHHHHHHHHHHHTTSTTSEEESCE
T ss_pred CCcCEEEEEcCCCCCCHHHHHHHHHHHHHCccceecCch
Confidence 468999999999999999998888777666666888763
No 17
>2lnd_A De novo designed protein, PFK fold; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=21.05 E-value=27 Score=24.81 Aligned_cols=69 Identities=25% Similarity=0.301 Sum_probs=36.1
Q ss_pred EEcCCCChhhHHHHHHhhccCCccccccccCCeEEEEEeeecCCCCchhhhhhHHhhhhCC---CeeeeCCCcccCCCch
Q 024273 49 VYTGFGSHLNRNVYRGSWMPKGDALKKLEERGVVIRFVIGRSANRGDSLDRKIDAENRETK---DFLILEGHEEAQEELP 125 (270)
Q Consensus 49 V~S~~~~~~rR~aIR~TW~~~~~~~~~l~~~~v~v~FvvG~~~~~~~~~~~~l~~E~~~~~---DIi~l~d~~Dsy~nlt 125 (270)
|.|+....+-|+.|...=-+ .+-.++|+-|.+.+.- .+.+.|+++-| |++--. | -..|+
T Consensus 31 irtatssqdirdiiksmkdn----------gkplvvfvngasqndv----nefqneakkegvsydvlkst---d-peelt 92 (112)
T 2lnd_A 31 IRTATSSQDIRDIIKSMKDN----------GKPLVVFVNGASQNDV----NEFQNEAKKEGVSYDVLKST---D-PEELT 92 (112)
T ss_dssp EEEECSHHHHHHHHHHHTTC----------CSCEEEEECSCCHHHH----HHHHHHHHHHTCEEEEEECC---C-HHHHH
T ss_pred eeeccchhhHHHHHHHHHhc----------CCeEEEEecCcccccH----HHHHHHHHhcCcchhhhccC---C-HHHHH
Confidence 34555556666666653222 1236789999875432 24445554433 555222 2 22466
Q ss_pred HHHHHHHHHh
Q 024273 126 KKAKFFFSTA 135 (270)
Q Consensus 126 ~Ktl~~~~w~ 135 (270)
..+-.+++-+
T Consensus 93 qrvreflkta 102 (112)
T 2lnd_A 93 QRVREFLKTA 102 (112)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 6666666544
No 18
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=20.98 E-value=3.9e+02 Score=22.73 Aligned_cols=89 Identities=10% Similarity=-0.002 Sum_probs=47.1
Q ss_pred HhhhcCCceEEEEecCcee-eChHHHHHHhhhc--CCCCceEEEEeecCcc--------eecCCCceee---cCcc-ccC
Q 024273 134 TAVQIWDAEFYVKVDDNID-LDLEGLIGLLDRS--RGQESAYIGCMKSGDV--------VTEEGRQWYE---PEWW-KFG 198 (270)
Q Consensus 134 w~~~~~~~~fvlK~DDD~f-vn~~~L~~~L~~~--~~~~~~y~G~~~~~~~--------ir~~~~kw~~---~~~~-~~~ 198 (270)
...+..+.+|++.+|+|.. +.++.|...+... .+.-.+..|....... .+...++... .... .++
T Consensus 125 ~g~~~a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (329)
T 3ckj_A 125 RSLAASRGDIVVFVDSDLINPHPMFVPWLVGPLLTGDGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVARPLLAALR 204 (329)
T ss_dssp HHHHHCCCSEEEECCTTEESCCTTHHHHHHHHHHSCSSCCEEEEEEECC---------------CHHHHHTHHHHHHHHC
T ss_pred HHHHhCCCCEEEEECCCCCCcChHHHHHHHHHHHhCCCccEEEEEecccccCCcccccccccCCCceehhhHHHHHHHhh
Confidence 3344456799999999999 8888777776652 2333566665432110 1111111110 0000 011
Q ss_pred CCCCCCCCCcCCeeeeCHHHHHHH
Q 024273 199 DGKSYFRHAAGSIFVLSRNLAQYI 222 (270)
Q Consensus 199 ~~~~yP~y~~G~~YilS~dlv~~i 222 (270)
+...-..++.|+.+++++++++.+
T Consensus 205 ~~~~~~~~~~~g~~~~rr~~l~~i 228 (329)
T 3ckj_A 205 PELGCILQPLGGEYAATRELLTSV 228 (329)
T ss_dssp GGGGGCSCTTCSCEEEEHHHHTTS
T ss_pred hhhccccCCCccceeeeHHHHHhC
Confidence 100112356788899999999876
No 19
>1v84_A Galactosylgalactosylxylosylprotein 3-beta- glucuronosyltransferase 1; glycoprotein, glycocyltransferase, HNK-1 epitop; HET: GAL NDG NAG TLA UDP; 1.82A {Homo sapiens} SCOP: c.68.1.7 PDB: 1v83_A* 1v82_A*
Probab=20.04 E-value=2.1e+02 Score=24.50 Aligned_cols=85 Identities=9% Similarity=0.013 Sum_probs=47.6
Q ss_pred HHHHHHHhhhc-----CCceEEEEecCceeeChHHHHHHhhhcCCCCceEEEEeec---CcceecCCCc---eeecCccc
Q 024273 128 AKFFFSTAVQI-----WDAEFYVKVDDNIDLDLEGLIGLLDRSRGQESAYIGCMKS---GDVVTEEGRQ---WYEPEWWK 196 (270)
Q Consensus 128 tl~~~~w~~~~-----~~~~fvlK~DDD~fvn~~~L~~~L~~~~~~~~~y~G~~~~---~~~ir~~~~k---w~~~~~~~ 196 (270)
-.++++|+.++ ...--|.++|||.-.+++- ++.+++.+.-.---+|.+.. ..|+.++++| |+....
T Consensus 89 Rn~AL~~Ir~~~~~~~~~~GVVyFADDdNtYdl~L-F~emR~i~~vgvWPVglvg~~~~EgPv~~~~gkVvGw~~~w~-- 165 (253)
T 1v84_A 89 RNLALRWLRETFPRNSSQPGVVYFADDDNTYSLEL-FEEMRSTRRVSVWPVAFVGGLRYEAPRVNGAGKVVRWKTVFD-- 165 (253)
T ss_dssp HHHHHHHHHHHSCSSSCCCEEEEECCTTSEECHHH-HHHHHTCSSEEECCEESCTTSSEEEEEECTTSCEEEEECSSC--
T ss_pred HHHHHHHHHHhcccccccceeEEEecCCCcccHHH-HHHHhccCeeEEEEEEeecCcceecCeECCCCCEeeeecccC--
Confidence 34788999875 2346788999999999765 44566532111111222211 1455555566 776421
Q ss_pred cCCCCCCCCCCcCCeeeeCHHHH
Q 024273 197 FGDGKSYFRHAAGSIFVLSRNLA 219 (270)
Q Consensus 197 ~~~~~~yP~y~~G~~YilS~dlv 219 (270)
+...||- .=+||+++..++
T Consensus 166 --~~R~fpi--DmAGFA~N~~ll 184 (253)
T 1v84_A 166 --PHRPFAI--DMAGFAVNLRLI 184 (253)
T ss_dssp --TTSTTCC--CGGGEEEEHHHH
T ss_pred --CCCCccc--eeeeeEEEehhh
Confidence 2223443 335788888755
Done!