Query 024274
Match_columns 270
No_of_seqs 220 out of 613
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 03:22:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024274.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024274hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4282 Transcription factor G 99.9 9.2E-24 2E-28 199.3 21.3 230 13-268 54-325 (345)
2 PF13837 Myb_DNA-bind_4: Myb/S 99.9 1.5E-22 3.3E-27 155.1 7.7 85 14-98 2-90 (90)
3 PF13873 Myb_DNA-bind_5: Myb/S 98.4 2.1E-06 4.6E-11 64.4 7.7 66 12-77 1-74 (78)
4 PF12776 Myb_DNA-bind_3: Myb/S 98.0 1.9E-05 4.1E-10 60.9 6.6 67 15-81 1-71 (96)
5 smart00595 MADF subfamily of S 98.0 4.2E-06 9.2E-11 63.9 2.1 70 24-98 2-84 (89)
6 PF10545 MADF_DNA_bdg: Alcohol 97.7 2.5E-05 5.4E-10 58.2 2.4 60 34-96 18-83 (85)
7 PF00249 Myb_DNA-binding: Myb- 97.6 0.00014 3E-09 49.9 5.2 47 14-72 2-48 (48)
8 PF13921 Myb_DNA-bind_6: Myb-l 97.2 0.00041 8.9E-09 49.3 4.1 41 16-70 1-41 (60)
9 smart00717 SANT SANT SWI3, AD 97.2 0.00071 1.5E-08 44.6 4.5 46 14-72 2-47 (49)
10 cd00167 SANT 'SWI3, ADA2, N-Co 97.0 0.0013 2.9E-08 42.7 4.1 44 15-71 1-44 (45)
11 PLN03212 Transcription repress 94.9 0.054 1.2E-06 49.8 5.6 51 10-72 22-72 (249)
12 PLN03091 hypothetical protein; 92.5 0.2 4.4E-06 49.6 5.1 50 9-70 10-59 (459)
13 PLN03212 Transcription repress 91.5 0.6 1.3E-05 43.1 6.7 51 13-77 78-128 (249)
14 PLN03091 hypothetical protein; 90.1 0.96 2.1E-05 44.9 7.1 51 13-77 67-117 (459)
15 KOG1279 Chromatin remodeling f 88.8 0.57 1.2E-05 47.4 4.6 50 9-72 249-298 (506)
16 COG5259 RSC8 RSC chromatin rem 87.6 0.83 1.8E-05 45.6 4.7 48 12-73 278-325 (531)
17 KOG1029 Endocytic adaptor prot 87.5 6 0.00013 42.1 11.0 37 186-222 333-372 (1118)
18 PF04504 DUF573: Protein of un 84.2 5.9 0.00013 31.3 7.3 65 14-81 5-71 (98)
19 TIGR02894 DNA_bind_RsfA transc 81.4 3.3 7.1E-05 35.9 5.2 59 11-77 2-61 (161)
20 KOG0051 RNA polymerase I termi 80.4 2.8 6.2E-05 43.2 5.2 63 11-77 434-512 (607)
21 KOG0049 Transcription factor, 71.0 8.1 0.00018 40.5 5.5 54 12-77 252-305 (939)
22 PRK13831 conjugal transfer pro 68.6 6.5 0.00014 39.1 4.2 50 212-266 123-172 (432)
23 COG4741 Predicted secreted end 67.6 84 0.0018 27.4 10.9 22 181-202 24-45 (175)
24 KOG0048 Transcription factor, 65.9 6.3 0.00014 35.7 3.3 45 14-70 10-54 (238)
25 KOG4661 Hsp27-ERE-TATA-binding 48.4 1.5E+02 0.0032 31.2 9.7 13 66-78 420-432 (940)
26 PRK13923 putative spore coat p 47.4 54 0.0012 28.7 5.8 60 10-77 2-62 (170)
27 KOG0457 Histone acetyltransfer 46.8 43 0.00093 33.5 5.6 54 2-70 63-116 (438)
28 PF03353 Lin-8: Ras-mediated v 44.9 30 0.00066 32.4 4.2 61 15-77 19-83 (313)
29 PF00435 Spectrin: Spectrin re 43.7 1.1E+02 0.0025 22.0 6.5 62 17-79 32-93 (105)
30 KOG2889 Predicted PRP38-like s 43.0 50 0.0011 29.4 4.9 44 59-102 111-155 (204)
31 KOG4282 Transcription factor G 41.7 1.9E+02 0.0042 27.3 9.2 49 180-242 245-293 (345)
32 KOG1029 Endocytic adaptor prot 39.5 3.8E+02 0.0082 29.3 11.3 18 213-230 352-369 (1118)
33 KOG4661 Hsp27-ERE-TATA-binding 38.3 2E+02 0.0043 30.3 8.9 13 220-232 647-659 (940)
34 KOG1144 Translation initiation 37.6 4.8E+02 0.01 28.6 11.8 19 8-26 5-23 (1064)
35 COG4741 Predicted secreted end 36.9 2.9E+02 0.0063 24.2 9.1 9 211-219 36-44 (175)
36 PLN03086 PRLI-interacting fact 36.4 1.6E+02 0.0036 30.5 8.2 16 224-239 27-42 (567)
37 cd07683 F-BAR_srGAP1 The F-BAR 36.1 1.1E+02 0.0025 28.4 6.4 46 187-232 8-53 (253)
38 TIGR01557 myb_SHAQKYF myb-like 33.7 79 0.0017 22.6 3.9 45 12-68 2-50 (57)
39 PF08994 T4_Gp59_C: T4 gene Gp 33.5 91 0.002 25.2 4.6 55 20-75 46-102 (103)
40 PLN03086 PRLI-interacting fact 32.4 2.5E+02 0.0055 29.1 8.8 25 224-248 20-44 (567)
41 PF09356 Phage_BR0599: Phage c 26.7 27 0.00059 26.5 0.6 22 55-77 51-72 (80)
42 PF07750 GcrA: GcrA cell cycle 25.7 88 0.0019 26.9 3.6 39 14-65 1-39 (162)
43 PRK07217 replication factor A; 25.0 1E+02 0.0022 29.6 4.2 33 44-76 7-39 (311)
44 KOG0163 Myosin class VI heavy 24.8 6.3E+02 0.014 27.8 10.1 56 180-235 904-962 (1259)
45 KOG0048 Transcription factor, 23.8 1.6E+02 0.0035 26.5 5.2 51 13-77 62-113 (238)
46 PF11600 CAF-1_p150: Chromatin 22.6 5.5E+02 0.012 22.8 10.7 35 231-265 155-190 (216)
47 PF14818 DUF4482: Domain of un 20.0 2E+02 0.0043 24.5 4.5 21 200-220 19-39 (141)
No 1
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=99.92 E-value=9.2e-24 Score=199.28 Aligned_cols=230 Identities=29% Similarity=0.442 Sum_probs=149.6
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhccCCC--CCCCCCC
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDP--DSGRQCP 90 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k~~~~--~~g~~~~ 90 (270)
.++|+.+||++||.||++++..|..+++|.++|++||++|.+.||.||+.||++||+||+++||+.+.+.. ..+.+|+
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~s~~~ 133 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEGSSWK 133 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCCccch
Confidence 49999999999999999999999999999999999999999999999999999999999999999876533 2467999
Q ss_pred CHHHHHHHhc-Ccc-chhhhhh---hhccc----cc-hh-hhhhhhc---------------cCCCCCCC----------
Q 024274 91 FFNELHAVFT-ERA-KNMQRLL---AESEA----GS-MQ-AKKRFKR---------------LNADELSD---------- 134 (270)
Q Consensus 91 fFdeLd~ll~-~~~-~~~~~~~---~e~~~----~~-~~-~~k~~~~---------------~~~~~~S~---------- 134 (270)
||.+||+++. ..+ ...+..+ ...+. ++ .+ ....... .......+
T Consensus 134 ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 213 (345)
T KOG4282|consen 134 FFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEPVAGSL 213 (345)
T ss_pred HHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCCCCcch
Confidence 9999999996 222 0010000 00000 00 00 0000000 00000000
Q ss_pred -CC---CcchhhhhhhhHhhhccccccchhhhhhcccCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024274 135 -EE---DDDEEQSEEEEEEEERPARGNSRKRKIERNVSDKSPRATSGTAGIHEMLKAFFDQQQRMEVEWRQMMERRAQER 210 (270)
Q Consensus 135 -~e---~~~~e~~de~~~~~e~~~~~kkrkr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~e~~e~~e~er 210 (270)
.+ .++.+++. + .... ....+++..+ ......++..+++.+++.|+.|+..+..+++.+++++
T Consensus 214 ~~~~~~s~~~~~s~--~--~~~~-~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 279 (345)
T KOG4282|consen 214 SNDTSSSSSPDDSA--D--SEGG-KSSSRKRRVR---------KDGSKEGIEELMREVARSQERLDEVLERVEEKKEQER 279 (345)
T ss_pred hhccccccchhccc--c--cccC-CCCCCCcccc---------ccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhh
Confidence 00 00000000 0 0000 1111111111 1112467889999999999999999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 024274 211 QLFEEEWRQRMEKLERERLLVEQAWREKEEQRRIREESRAERRDALLTTLLTKLINQN 268 (270)
Q Consensus 211 ~~~Ee~Wr~~m~~~e~eR~~~e~~~~~re~~~r~re~~~~~~r~~~~~~~l~kl~~~~ 268 (270)
+.+++.||.+ +.+| .+| ...+.+++.....++..++.+++.+.+..
T Consensus 280 ~~~~e~~r~~----~~~r-~ke-------~e~~~~~~~~~~~~~i~~i~~~~~~~~~~ 325 (345)
T KOG4282|consen 280 MSEEEKWRME----EIER-NKE-------LELARQERIQETQLEIRSIKAIQASRRGS 325 (345)
T ss_pred hhHHHHHHHH----HHHh-cch-------HHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence 9999999966 4444 222 23344456677788888999988886643
No 2
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=99.87 E-value=1.5e-22 Score=155.13 Aligned_cols=85 Identities=40% Similarity=0.787 Sum_probs=59.4
Q ss_pred CCCCHHHHHHHHHHHhh--hHHhhhh--cccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhccCCCCCCCCC
Q 024274 14 VQWGNEETRDLIVIRGE--TERDLVG--IKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDPDSGRQC 89 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e--~~~~f~~--~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k~~~~~~g~~~ 89 (270)
.+||++||.+||.+|.+ +...|.. ..++..+|+.||..|++.||.||+.||+.||+||++.|++++.....+|.+|
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~Yk~~k~~~~~~~~~w 81 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKKYKKIKDRNKKSGSSW 81 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHCSSSSSS----S-
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCcC
Confidence 68999999999999999 5667864 5677789999999999999999999999999999999999988776667899
Q ss_pred CCHHHHHHH
Q 024274 90 PFFNELHAV 98 (270)
Q Consensus 90 ~fFdeLd~l 98 (270)
|||++||+|
T Consensus 82 ~~f~~md~i 90 (90)
T PF13837_consen 82 PYFDEMDEI 90 (90)
T ss_dssp --TT-----
T ss_pred cCHHHHhcC
Confidence 999999986
No 3
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=98.35 E-value=2.1e-06 Score=64.37 Aligned_cols=66 Identities=27% Similarity=0.385 Sum_probs=54.3
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhh-------cccchhHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHHHhhh
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVG-------IKRNKTIWEIVSVKLRERGY-SRTPDQCKCKWKNLVNRYKG 77 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~-------~~rn~~lWe~IS~~L~e~Gy-~Rsa~QCr~KwknLk~~YK~ 77 (270)
|.++||.+|+..||.+....-..+.+ ...+..+|+.|+..|...|. .||+.||+.+|.||+..-|+
T Consensus 1 R~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~~Kk 74 (78)
T PF13873_consen 1 RKPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSKAKK 74 (78)
T ss_pred CCCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999998876543333 13456899999999998877 89999999999999987654
No 4
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=98.00 E-value=1.9e-05 Score=60.90 Aligned_cols=67 Identities=27% Similarity=0.347 Sum_probs=55.6
Q ss_pred CCCHHHHHHHHHHHhhhHH--hh-hhcccchhHHHHHHHHHHHc-CCCCCHHhHHHHHHHHHHHhhhhccC
Q 024274 15 QWGNEETRDLIVIRGETER--DL-VGIKRNKTIWEIVSVKLRER-GYSRTPDQCKCKWKNLVNRYKGKETS 81 (270)
Q Consensus 15 ~Wt~eET~~LI~Ir~e~~~--~f-~~~~rn~~lWe~IS~~L~e~-Gy~Rsa~QCr~KwknLk~~YK~~k~~ 81 (270)
+||++.+..||.+..+.-. .. .++.-++..|..|+..|.+. |...+..||++||+.|++.|+.++.-
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~~y~~~~~l 71 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKKDYRIWKEL 71 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999987532 22 24456778999999999874 88999999999999999999987643
No 5
>smart00595 MADF subfamily of SANT domain.
Probab=97.95 E-value=4.2e-06 Score=63.90 Aligned_cols=70 Identities=24% Similarity=0.487 Sum_probs=49.5
Q ss_pred HHHHHhhh---H----HhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhccC---CCCC---CCCCC
Q 024274 24 LIVIRGET---E----RDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETS---DPDS---GRQCP 90 (270)
Q Consensus 24 LI~Ir~e~---~----~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k~~---~~~~---g~~~~ 90 (270)
||.++... . ..|........+|..||..|.. |+..|+.||++|+..|...... .+.+ ...|.
T Consensus 2 LI~~v~~~p~Lwd~~~~~y~~~~~r~~aW~~Ia~~l~~-----~~~~~~~kw~~LR~~y~~e~~r~~~~~~~~~~~~~w~ 76 (89)
T smart00595 2 LIELVRERPCLWDRRHPDYRNKEEKRKAWEEIAEELGL-----SVEECKKRWKNLRDRYRRELKRLQNGKSGGGKKSKWE 76 (89)
T ss_pred hHHHHHhCccccCCCChhhcChHHHHHHHHHHHHHHCc-----CHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCch
Confidence 56665542 1 3444444556799999999855 9999999999999999974321 1122 36899
Q ss_pred CHHHHHHH
Q 024274 91 FFNELHAV 98 (270)
Q Consensus 91 fFdeLd~l 98 (270)
||+.|.=|
T Consensus 77 ~~~~m~FL 84 (89)
T smart00595 77 YFDRLSFL 84 (89)
T ss_pred hhHhhhhH
Confidence 99999754
No 6
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats. The MADF domain is found in one or more copies in eukaryotic and viral proteins and is often associated with the BESS domain []. MADF is related to the Myb DNA-binding domain (IPR001005 from INTERPRO). The retroviral oncogene v-myb, and its cellular counterpart c-myb, are nuclear DNA-binding proteins that specifically recognise the sequence YAAC(G/T)G. It is likely that the MADF domain is more closely related to the myb/SANT domain than it is to other HTH domains. Some proteins known to contain a MADF domain are listed below: Drosophila Adf-1, a transcription factor first identified on the basis of its interaction with the alcohol dehydrogenase promoter but that binds the promoters of a diverse group of genes []. Drosophila Dorsal-interacting protein 3 (Dip3), which functions both as an activator to bind DNA in a sequence specific manner and a coactivator to stimulate synergistic activation by Dorsal and Twist []. Drosophila Stonewall (Stwl), a putative transcription factor required for maintenance of female germline stem cells as well as oocyte differentiation.
Probab=97.67 E-value=2.5e-05 Score=58.18 Aligned_cols=60 Identities=25% Similarity=0.508 Sum_probs=45.2
Q ss_pred hhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhccCCC------CCCCCCCCHHHHH
Q 024274 34 DLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDP------DSGRQCPFFNELH 96 (270)
Q Consensus 34 ~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k~~~~------~~g~~~~fFdeLd 96 (270)
.|........+|..|+..| |...++..|+.+|++|...|...+.... ..+..|.||+.|.
T Consensus 18 ~y~~~~~r~~aw~~Ia~~l---~~~~~~~~~~~~w~~Lr~~y~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (85)
T PF10545_consen 18 DYKNRQLREEAWQEIAREL---GKEFSVDDCKKRWKNLRDRYRRELKKIKSSGGSEEYVPTWSYYEELS 83 (85)
T ss_pred ccCCHHHHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccHHHHHCc
Confidence 4444445668999999988 6667799999999999999997543321 2236899999874
No 7
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=97.61 E-value=0.00014 Score=49.86 Aligned_cols=47 Identities=23% Similarity=0.552 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV 72 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk 72 (270)
..||.+|...|+.+...+.. .-|..||..|. -.||+.||+.+|.+|+
T Consensus 2 ~~Wt~eE~~~l~~~v~~~g~---------~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 2 GPWTEEEDEKLLEAVKKYGK---------DNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp -SS-HHHHHHHHHHHHHSTT---------THHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------cHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 47999999999999887542 26999999876 6799999999999873
No 8
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=97.25 E-value=0.00041 Score=49.28 Aligned_cols=41 Identities=32% Similarity=0.742 Sum_probs=33.5
Q ss_pred CCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 024274 16 WGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKN 70 (270)
Q Consensus 16 Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kwkn 70 (270)
||.+|...|+.++.... .-|..||..|. +||+.+|+.+|.+
T Consensus 1 WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----~Rt~~~~~~r~~~ 41 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG----------NDWKKIAEHLG----NRTPKQCRNRWRN 41 (60)
T ss_dssp S-HHHHHHHHHHHHHHT----------S-HHHHHHHST----TS-HHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC----------cCHHHHHHHHC----cCCHHHHHHHHHH
Confidence 99999999999998742 25999999873 8999999999998
No 9
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=97.19 E-value=0.00071 Score=44.59 Aligned_cols=46 Identities=33% Similarity=0.689 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV 72 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk 72 (270)
..||.+|...|+.....+.. ..|..||..|. .||+.+|+.+|.++.
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~---------~~w~~Ia~~~~----~rt~~~~~~~~~~~~ 47 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGK---------NNWEKIAKELP----GRTAEQCRERWNNLL 47 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCc---------CCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 57999999999999886532 56999999885 899999999999875
No 10
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=96.96 E-value=0.0013 Score=42.66 Aligned_cols=44 Identities=34% Similarity=0.724 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 15 QWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 15 ~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
.||.+|...|+.....+.. ..|..||..|.. ||+.+|+.+|.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~---------~~w~~Ia~~~~~----rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGK---------NNWEKIAKELPG----RTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCc---------CCHHHHHhHcCC----CCHHHHHHHHHHh
Confidence 5999999999998886531 469999998753 9999999999886
No 11
>PLN03212 Transcription repressor MYB5; Provisional
Probab=94.89 E-value=0.054 Score=49.83 Aligned_cols=51 Identities=20% Similarity=0.446 Sum_probs=39.5
Q ss_pred CcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 024274 10 HAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV 72 (270)
Q Consensus 10 ~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk 72 (270)
+-+...||.+|-..|+.+...+. ..-|..||..| |..||+.||+.+|.|..
T Consensus 22 glKRg~WT~EEDe~L~~lV~kyG---------~~nW~~IAk~~---g~gRT~KQCReRW~N~L 72 (249)
T PLN03212 22 GMKRGPWTVEEDEILVSFIKKEG---------EGRWRSLPKRA---GLLRCGKSCRLRWMNYL 72 (249)
T ss_pred CCcCCCCCHHHHHHHHHHHHHhC---------cccHHHHHHhh---hcCCCcchHHHHHHHhh
Confidence 34456899999999998776542 13599998764 57899999999999754
No 12
>PLN03091 hypothetical protein; Provisional
Probab=92.46 E-value=0.2 Score=49.58 Aligned_cols=50 Identities=22% Similarity=0.469 Sum_probs=39.0
Q ss_pred CCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 024274 9 AHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKN 70 (270)
Q Consensus 9 ~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kwkn 70 (270)
..-+...||.+|=..|+.+...+. ..-|..||.. .|..|+++||+.+|.|
T Consensus 10 qklrKg~WTpEEDe~L~~~V~kyG---------~~nWs~IAk~---~g~gRT~KQCRERW~N 59 (459)
T PLN03091 10 QKLRKGLWSPEEDEKLLRHITKYG---------HGCWSSVPKQ---AGLQRCGKSCRLRWIN 59 (459)
T ss_pred CCCcCCCCCHHHHHHHHHHHHHhC---------cCCHHHHhhh---hccCcCcchHhHHHHh
Confidence 344556899999999998876532 1469999875 4678999999999986
No 13
>PLN03212 Transcription repressor MYB5; Provisional
Probab=91.51 E-value=0.6 Score=43.09 Aligned_cols=51 Identities=12% Similarity=0.235 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhh
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKG 77 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~ 77 (270)
...||.+|-..||.....+- .-|-.||..|. .||..+|+++|.++.+.+..
T Consensus 78 kgpWT~EED~lLlel~~~~G----------nKWs~IAk~Lp----GRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLG----------NRWSLIAGRIP----GRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred cCCCChHHHHHHHHHHHhcc----------ccHHHHHhhcC----CCCHHHHHHHHHHHHhHHHH
Confidence 46899999999998765532 46999999873 49999999999987766543
No 14
>PLN03091 hypothetical protein; Provisional
Probab=90.12 E-value=0.96 Score=44.93 Aligned_cols=51 Identities=18% Similarity=0.363 Sum_probs=42.7
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhh
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKG 77 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~ 77 (270)
...||.+|-..||.++..+ | .-|..||..| -.||..+|+++|..+.+.|.+
T Consensus 67 KgpWT~EED~lLLeL~k~~-----G-----nKWskIAk~L----PGRTDnqIKNRWnslLKKklr 117 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVL-----G-----NRWSQIAAQL----PGRTDNEIKNLWNSCLKKKLR 117 (459)
T ss_pred CCCCCHHHHHHHHHHHHHh-----C-----cchHHHHHhc----CCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999888764 2 5699999987 469999999999998887654
No 15
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=88.76 E-value=0.57 Score=47.35 Aligned_cols=50 Identities=20% Similarity=0.335 Sum_probs=41.2
Q ss_pred CCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 024274 9 AHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV 72 (270)
Q Consensus 9 ~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk 72 (270)
...-...||++||+.||.....+. ..|..||.... .+|..||-.||-.|-
T Consensus 249 ~~~~~~~WT~qE~lLLLE~ie~y~----------ddW~kVa~hVg----~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 249 GESARPNWTEQETLLLLEAIEMYG----------DDWNKVADHVG----TKSQEQCILKFLRLP 298 (506)
T ss_pred cccCCCCccHHHHHHHHHHHHHhc----------ccHHHHHhccC----CCCHHHHHHHHHhcC
Confidence 556678999999999998776532 68999988654 899999999998874
No 16
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=87.56 E-value=0.83 Score=45.64 Aligned_cols=48 Identities=21% Similarity=0.345 Sum_probs=39.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVN 73 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~ 73 (270)
+-.+||++|+..||.-...+. .-|..||... | ++|.+||.-+|=+|-.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg----------DdW~kVA~HV---g-tKt~EqCIl~FL~LPi 325 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG----------DDWDKVARHV---G-TKTKEQCILHFLQLPI 325 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh----------hhHHHHHHHh---C-CCCHHHHHHHHHcCCc
Confidence 446999999999998776543 6899999865 4 8999999999998753
No 17
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.52 E-value=6 Score=42.14 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 024274 186 KAFFDQQQRMEVEWRQMMERRAQER---QLFEEEWRQRME 222 (270)
Q Consensus 186 ~~~~~~q~~~~~~~~e~~e~~e~er---~~~Ee~Wr~~m~ 222 (270)
+..|..|++.+..=++-.|+-|+++ ...|.+|.++.|
T Consensus 333 Rq~leeqqqreree~eqkEreE~ekkererqEqErk~qlE 372 (1118)
T KOG1029|consen 333 RQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLE 372 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555554455555444433 334677876644
No 18
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=84.21 E-value=5.9 Score=31.32 Aligned_cols=65 Identities=12% Similarity=0.168 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcc--cchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhccC
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIK--RNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETS 81 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~--rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k~~ 81 (270)
..||.+.=..||.-..+....=.... --..+++.|...| .+..|..|..+|+..|++.|.....+
T Consensus 5 R~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l---~~~~s~~Ql~~KirrLK~Ky~~~~~k 71 (98)
T PF04504_consen 5 RLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSL---SFDVSKNQLYDKIRRLKKKYRNAVKK 71 (98)
T ss_pred CCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHc---cCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 46998776667666655421110011 1234666666654 57789999999999999999986544
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=81.42 E-value=3.3 Score=35.94 Aligned_cols=59 Identities=22% Similarity=0.355 Sum_probs=43.7
Q ss_pred cCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH-HHhhh
Q 024274 11 AQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV-NRYKG 77 (270)
Q Consensus 11 ~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk-~~YK~ 77 (270)
.|...||.++=+.|-.+.-. ..+.+.-.-..|++|...| +||+..|--+|+..+ +.|..
T Consensus 2 ~RQDAWT~eeDlLLAEtVLr---hIReG~TQL~AFeEvg~~L-----~RTsAACGFRWNs~VRkqY~~ 61 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLR---HIREGSTQLSAFEEVGRAL-----NRTAAACGFRWNAYVRKQYEE 61 (161)
T ss_pred ccccccccHHHHHHHHHHHH---HHhcchHHHHHHHHHHHHH-----cccHHHhcchHHHHHHHHHHH
Confidence 46788999998888766544 3334444456799998885 689999999999855 46775
No 20
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=80.39 E-value=2.8 Score=43.20 Aligned_cols=63 Identities=24% Similarity=0.317 Sum_probs=46.5
Q ss_pred cCCCCCCHHHHHHHHHHHhhhHH---hhh---------hccc----chhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHH
Q 024274 11 AQAVQWGNEETRDLIVIRGETER---DLV---------GIKR----NKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR 74 (270)
Q Consensus 11 ~r~~~Wt~eET~~LI~Ir~e~~~---~f~---------~~~r----n~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~ 74 (270)
.+...||.+|+..||.+..++-. ++. .... ...-|-.||.. +=.|+..||+-||..|...
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~----~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEM----LGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHh----hcCCCcchHHHHHHHHHhh
Confidence 46789999999999999987542 221 1111 22359999983 3469999999999999988
Q ss_pred hhh
Q 024274 75 YKG 77 (270)
Q Consensus 75 YK~ 77 (270)
|--
T Consensus 510 ~s~ 512 (607)
T KOG0051|consen 510 PSF 512 (607)
T ss_pred HHh
Confidence 764
No 21
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=70.96 E-value=8.1 Score=40.49 Aligned_cols=54 Identities=24% Similarity=0.477 Sum_probs=42.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhh
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKG 77 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~ 77 (270)
+...|+.+|...|++|=.- .+..-|+.||. ++|-+||+-||-.||+.-.+..+.
T Consensus 252 nk~~WS~EE~E~L~AiA~A---------~~~~~W~~IA~---~Lgt~RS~yQC~~kF~t~~~~L~e 305 (939)
T KOG0049|consen 252 NKEHWSNEEVEKLKALAEA---------PKFVSWPMIAL---NLGTNRSSYQCMEKFKTEVSQLSE 305 (939)
T ss_pred chhccChHHHHHHHHHHhc---------cccccHHHHHH---HhCCCcchHHHHHHHHHHHHHHHh
Confidence 4568999999999887543 23366999987 568999999999999986665543
No 22
>PRK13831 conjugal transfer protein TrbI; Provisional
Probab=68.63 E-value=6.5 Score=39.07 Aligned_cols=50 Identities=32% Similarity=0.460 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 024274 212 LFEEEWRQRMEKLERERLLVEQAWREKEEQRRIREESRAERRDALLTTLLTKLIN 266 (270)
Q Consensus 212 ~~Ee~Wr~~m~~~e~eR~~~e~~~~~re~~~r~re~~~~~~r~~~~~~~l~kl~~ 266 (270)
.-|++||.+|.+...|++.+| +-.+++|+=++.+++.|..+..=+.|+.+
T Consensus 123 e~~~~w~~~~~~~~~e~~~~~-----~~~q~~a~~~a~~~~~~~~~~~~~~~~~~ 172 (432)
T PRK13831 123 ESEEEWRARLKREQEEQYLRE-----RQRQRMARLQANAAAYDSPLAVDIGKVEK 172 (432)
T ss_pred ccHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhcchhhcCccccchHHHhh
Confidence 347788876665555555555 44678888888888888877766666654
No 23
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=67.62 E-value=84 Score=27.39 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 024274 181 IHEMLKAFFDQQQRMEVEWRQM 202 (270)
Q Consensus 181 ~~~~~~~~~~~q~~~~~~~~e~ 202 (270)
++.+=..|..++..++++|+-+
T Consensus 24 Ir~lq~~~e~k~~~l~e~l~~~ 45 (175)
T COG4741 24 IRSLQGKVESKARELEETLQKA 45 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566777777777777765
No 24
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=65.89 E-value=6.3 Score=35.70 Aligned_cols=45 Identities=20% Similarity=0.322 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKN 70 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kwkn 70 (270)
-+||.+|=..|+......-. .-|-.|+.. .|..|++++|+-+|-|
T Consensus 10 GpWt~EED~~L~~~V~~~G~---------~~W~~i~k~---~gl~R~GKSCRlRW~N 54 (238)
T KOG0048|consen 10 GPWTQEEDLTQIRSIKSFGK---------HNGTALPKL---AGLRRCGKSCRLRWTN 54 (238)
T ss_pred CCCChHHHHHHHHHHHHhCC---------CCcchhhhh---cCCCccchHHHHHhhc
Confidence 68999999999988876432 268888774 5668999999999997
No 25
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=48.44 E-value=1.5e+02 Score=31.20 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=9.0
Q ss_pred HHHHHHHHHhhhh
Q 024274 66 CKWKNLVNRYKGK 78 (270)
Q Consensus 66 ~KwknLk~~YK~~ 78 (270)
+-+|||...|-++
T Consensus 420 tDLKnlFSKyGKV 432 (940)
T KOG4661|consen 420 TDLKNLFSKYGKV 432 (940)
T ss_pred hHHHHHHHHhcce
Confidence 5677777777764
No 26
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=47.36 E-value=54 Score=28.75 Aligned_cols=60 Identities=18% Similarity=0.324 Sum_probs=42.4
Q ss_pred CcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHHHhhh
Q 024274 10 HAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKN-LVNRYKG 77 (270)
Q Consensus 10 ~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kwkn-Lk~~YK~ 77 (270)
..|...||.++=+.|-.+.-+ ....+...-..++.+...| .||+.+|..+|+. |.+.|..
T Consensus 2 k~rqdawt~e~d~llae~vl~---~i~eg~tql~afe~~g~~L-----~rt~aac~fRwNs~vrk~Yee 62 (170)
T PRK13923 2 KTRQDAWTQERDGLLAEVVLR---HIREGGTQLKAFEEVGDAL-----KRTAAACGFRWNSVVRKQYQE 62 (170)
T ss_pred cchhhhhhhHHHHHHHHHHHH---HHhccchHHHHHHHHHHHH-----hhhHHHHHhHHHHHHHHHHHH
Confidence 356789999998888665554 2333445557788888775 4799999999966 4446664
No 27
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=46.83 E-value=43 Score=33.45 Aligned_cols=54 Identities=17% Similarity=0.334 Sum_probs=39.8
Q ss_pred CCCCCCCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 024274 2 MTSSSSSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKN 70 (270)
Q Consensus 2 ~~~~~s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kwkn 70 (270)
|++++.++. -+.||.+|-..||.....+. | --|+.||+.+. .+|...|+.=|.+
T Consensus 63 m~~~s~~i~--~~~WtadEEilLLea~~t~G--~-------GNW~dIA~hIG----tKtkeeck~hy~k 116 (438)
T KOG0457|consen 63 MDTNSFPIL--DPSWTADEEILLLEAAETYG--F-------GNWQDIADHIG----TKTKEECKEHYLK 116 (438)
T ss_pred ecCCCCCCC--CCCCChHHHHHHHHHHHHhC--C-------CcHHHHHHHHc----ccchHHHHHHHHH
Confidence 455444444 37899999999998776642 2 45999999775 7999999986654
No 28
>PF03353 Lin-8: Ras-mediated vulval-induction antagonist; InterPro: IPR005020 This is a family of Caenorhabditis elegans proteins of unknown function.
Probab=44.88 E-value=30 Score=32.40 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHhh---hHHhhhhcccchhHHHHHHHHHH-HcCCCCCHHhHHHHHHHHHHHhhh
Q 024274 15 QWGNEETRDLIVIRGE---TERDLVGIKRNKTIWEIVSVKLR-ERGYSRTPDQCKCKWKNLVNRYKG 77 (270)
Q Consensus 15 ~Wt~eET~~LI~Ir~e---~~~~f~~~~rn~~lWe~IS~~L~-e~Gy~Rsa~QCr~KwknLk~~YK~ 77 (270)
.|...-.+++|.+... ++. ..+......|..|+..+- .-|...+...|+.=|++-+...+.
T Consensus 19 ~~~~~~kk~il~~i~~~p~lw~--~~~~~~~~~~~~v~v~vy~Rtg~~~~~~~i~~~~~~aK~~Lr~ 83 (313)
T PF03353_consen 19 KKDVELKKVILSEIEKFPELWK--KKSRVPNEEWEEVAVEVYKRTGKLVSVKHIRSIFKNAKDSLRR 83 (313)
T ss_pred hhhHHHHHHHHHHHhcChHhhh--ccCCccHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHHHHHH
Confidence 3444444555555554 443 444566779999999985 569999999999999997777664
No 29
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=43.69 E-value=1.1e+02 Score=22.01 Aligned_cols=62 Identities=15% Similarity=0.177 Sum_probs=45.2
Q ss_pred CHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhc
Q 024274 17 GNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKE 79 (270)
Q Consensus 17 t~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k 79 (270)
+..++..+|.....+...+......-..-..++..|...| .-.+..|+.++.+|..+|..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~ei~~~~~~l~~l~~~~~~L~~~~-~~~~~~i~~~~~~l~~~w~~l~ 93 (105)
T PF00435_consen 32 DLEELEEQLKKHKELQEEIESRQERLESLNEQAQQLIDSG-PEDSDEIQEKLEELNQRWEALC 93 (105)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HTTHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHHHHHH
Confidence 4567778888777777666664444455556777886655 6678999999999999988754
No 30
>KOG2889 consensus Predicted PRP38-like splicing factor [Function unknown]
Probab=43.01 E-value=50 Score=29.42 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=34.5
Q ss_pred CCHHhHHHHHHHHHHHhhhhccCCCCCCCCCCCHHH-HHHHhcCc
Q 024274 59 RTPDQCKCKWKNLVNRYKGKETSDPDSGRQCPFFNE-LHAVFTER 102 (270)
Q Consensus 59 Rsa~QCr~KwknLk~~YK~~k~~~~~~g~~~~fFde-Ld~ll~~~ 102 (270)
.+...|..=..-|.+.|++++..++.+..+.-|.|+ +|+||...
T Consensus 111 ~~~~~~y~ylepl~nDyRKir~~~~~g~~~l~ylDe~iDdLL~~~ 155 (204)
T KOG2889|consen 111 GTDVDVYKYLEPLLNDYRKIRVVNGQGNRTLMYLDEVIDDLLNKS 155 (204)
T ss_pred cchHHHHHHHHHHHHHHHhhhhhcCCCceeeeeHHHHHHHHhhhc
Confidence 478899999999999999998776655567778764 56677654
No 31
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=41.70 E-value=1.9e+02 Score=27.27 Aligned_cols=49 Identities=29% Similarity=0.498 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024274 180 GIHEMLKAFFDQQQRMEVEWRQMMERRAQERQLFEEEWRQRMEKLERERLLVEQAWREKEEQR 242 (270)
Q Consensus 180 ~~~~~~~~~~~~q~~~~~~~~e~~e~~e~er~~~Ee~Wr~~m~~~e~eR~~~e~~~~~re~~~ 242 (270)
...+.+...|..-...+..|.+.+++-++ ..+.+|+..+..||.++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~e~~~~~~~~~~~--------------~~~~~~~~~~e~~r~~~~~r 293 (345)
T KOG4282|consen 245 GSKEGIEELMREVARSQERLDEVLERVEE--------------KKEQERMSEEEKWRMEEIER 293 (345)
T ss_pred ccchhHHHHhhhhhhhHHHHHHHHHHHhc--------------cchHhhhhHHHHHHHHHHHh
Confidence 34667777777777777777776666554 23788889999999888754
No 32
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.47 E-value=3.8e+02 Score=29.33 Aligned_cols=18 Identities=39% Similarity=0.390 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 024274 213 FEEEWRQRMEKLERERLL 230 (270)
Q Consensus 213 ~Ee~Wr~~m~~~e~eR~~ 230 (270)
|||+=|..=|++|+||..
T Consensus 352 reE~ekkererqEqErk~ 369 (1118)
T KOG1029|consen 352 REEEEKKERERQEQERKA 369 (1118)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344334444455555543
No 33
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=38.28 E-value=2e+02 Score=30.29 Aligned_cols=13 Identities=46% Similarity=0.759 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHH
Q 024274 220 RMEKLERERLLVE 232 (270)
Q Consensus 220 ~m~~~e~eR~~~e 232 (270)
..+++..||+.+|
T Consensus 647 e~eRl~~erlrle 659 (940)
T KOG4661|consen 647 ELERLKAERLRLE 659 (940)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444443333
No 34
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=37.59 E-value=4.8e+02 Score=28.60 Aligned_cols=19 Identities=11% Similarity=0.527 Sum_probs=14.1
Q ss_pred CCCcCCCCCCHHHHHHHHH
Q 024274 8 SAHAQAVQWGNEETRDLIV 26 (270)
Q Consensus 8 ~~~~r~~~Wt~eET~~LI~ 26 (270)
+.......|..+-..+||.
T Consensus 5 ~KK~k~~kwd~d~~ea~l~ 23 (1064)
T KOG1144|consen 5 GKKSKSKKWDGDASEALLA 23 (1064)
T ss_pred ccccccccccccHHHHHHH
Confidence 3445568898888888888
No 35
>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]
Probab=36.86 E-value=2.9e+02 Score=24.16 Aligned_cols=9 Identities=22% Similarity=0.375 Sum_probs=4.3
Q ss_pred HHHHHHHHH
Q 024274 211 QLFEEEWRQ 219 (270)
Q Consensus 211 ~~~Ee~Wr~ 219 (270)
+..|++|+.
T Consensus 36 ~~l~e~l~~ 44 (175)
T COG4741 36 RELEETLQK 44 (175)
T ss_pred HHHHHHHHH
Confidence 334555553
No 36
>PLN03086 PRLI-interacting factor K; Provisional
Probab=36.44 E-value=1.6e+02 Score=30.49 Aligned_cols=16 Identities=50% Similarity=0.634 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 024274 224 LERERLLVEQAWREKE 239 (270)
Q Consensus 224 ~e~eR~~~e~~~~~re 239 (270)
+++||.++|.+-+.||
T Consensus 27 ~~~~~~~~~~~~~~~~ 42 (567)
T PLN03086 27 LERERKAKEEAAKQRE 42 (567)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4555555554444444
No 37
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=36.07 E-value=1.1e+02 Score=28.41 Aligned_cols=46 Identities=22% Similarity=0.307 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024274 187 AFFDQQQRMEVEWRQMMERRAQERQLFEEEWRQRMEKLERERLLVE 232 (270)
Q Consensus 187 ~~~~~q~~~~~~~~e~~e~~e~er~~~Ee~Wr~~m~~~e~eR~~~e 232 (270)
.+++.|..++.+|++.|+.+-++|..-|-+.=+.+++|-..=+.+.
T Consensus 8 kcld~~~e~~~~lLqDlqdF~RrRAeIE~EYS~~L~KLa~~f~~K~ 53 (253)
T cd07683 8 KCLEQQTEMRVQLLQDLQDFFRKKAEIESEYSRNLEKLAERFMAKT 53 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4688999999999999999999999999999999999887766664
No 38
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=33.71 E-value=79 Score=22.55 Aligned_cols=45 Identities=13% Similarity=0.184 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHH---HHHHHHHHHcCCCC-CHHhHHHHH
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIW---EIVSVKLRERGYSR-TPDQCKCKW 68 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lW---e~IS~~L~e~Gy~R-sa~QCr~Kw 68 (270)
....||.+|-..||.....+.. .-| ..|+..| +..+ |+.||++-.
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~---------g~~a~pk~I~~~~---~~~~lT~~qV~SH~ 50 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGG---------PDWATPKRILELM---VVDGLTRDQVASHL 50 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCC---------CcccchHHHHHHc---CCCCCCHHHHHHHH
Confidence 3578999999999998887521 236 6676544 3455 999998753
No 39
>PF08994 T4_Gp59_C: T4 gene Gp59 loader of gp41 DNA helicase C-term; InterPro: IPR015086 The Bacteriophage T4 gene 59 helicase assembly protein is required for recombination-dependent DNA replication, which is the predominant mode of DNA replication in the late stage of T4 infection. T4 gene 59 helicase assembly protein accelerates the loading of the T4 gene 41 helicase during DNA synthesis by the T4 replication system in vitro. T4 gene 59 helicase assembly protein binds to both T4 gene 41 helicase and T4 gene 32 single-stranded DNA binding protein, and to single and double-stranded DNA. The C-terminal domain of the T4 gene 59 helicase assembly protein consists of seven alpha-helices with short intervening loops and turns; the surface of the domain contains large regions of exposed hydrophobic residues and clusters of acidic and basic residues. The hydrophobic region on the 'bottom' surface of the domain near the C-terminal helix binds the leading strand DNA, whilst the hydrophobic region on the, top, surface of the domain lies between the two arms of the fork DNA, allowing for T4 gene 41 helicase binding and assembly into a hexameric complex around the lagging strand []. ; PDB: 1C1K_A.
Probab=33.49 E-value=91 Score=25.21 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=35.0
Q ss_pred HHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHH-cCC-CCCHHhHHHHHHHHHHHh
Q 024274 20 ETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRE-RGY-SRTPDQCKCKWKNLVNRY 75 (270)
Q Consensus 20 ET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e-~Gy-~Rsa~QCr~KwknLk~~Y 75 (270)
||..+++-.=..-..|.. ....++|..++.+|.. .-| ..+..+|+.-+....+.+
T Consensus 46 ET~vilds~Lg~v~~~Dk-~~~D~iW~~~s~kl~kYr~fl~Id~~kyk~~~~eti~~~ 102 (103)
T PF08994_consen 46 ETFVILDSFLGFVDKFDK-VLTDPIWKNYSTKLKKYRPFLKIDCEKYKKLFIETIKSC 102 (103)
T ss_dssp HHHHHHHHHH-HHHHHHH-H---HHHHHHHHHHHHHHHHEEE-HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHhhHHhhhh-hccchhHHHHHHHHHHhcchhhcCHHHHHHHHHHHHHhc
Confidence 777777666555555554 5667999999999875 222 567888888877766554
No 40
>PLN03086 PRLI-interacting factor K; Provisional
Probab=32.41 E-value=2.5e+02 Score=29.13 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 024274 224 LERERLLVEQAWREKEEQRRIREES 248 (270)
Q Consensus 224 ~e~eR~~~e~~~~~re~~~r~re~~ 248 (270)
.++.|+..|++.+.+|+..+.||.-
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (567)
T PLN03086 20 KQRAKLKLERERKAKEEAAKQREAI 44 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555543
No 41
>PF09356 Phage_BR0599: Phage conserved hypothetical protein BR0599; InterPro: IPR018964 This entry describes the C-terminal region of a family of proteins found almost exclusively in phage or in prophage regions of bacterial genomes, including the phage-like Rhodobacter capsulatus (Rhodopseudomonas capsulata) gene transfer agent, which packages DNA. An apparent exception is Wolbachia pipientis wMel, a bacterial endosymbiont of the fruit fly, which has several candidate phage-related genes physically separate from obvious prophage regions.
Probab=26.72 E-value=27 Score=26.55 Aligned_cols=22 Identities=32% Similarity=0.783 Sum_probs=18.4
Q ss_pred cCCCCCHHhHHHHHHHHHHHhhh
Q 024274 55 RGYSRTPDQCKCKWKNLVNRYKG 77 (270)
Q Consensus 55 ~Gy~Rsa~QCr~KwknLk~~YK~ 77 (270)
-|..++..-|+.||.|+.+ |..
T Consensus 51 ~GCDkt~~tC~~kF~N~~N-F~G 72 (80)
T PF09356_consen 51 PGCDKTFATCRAKFNNALN-FRG 72 (80)
T ss_pred eCCCCCHHHHHHHhCCccc-cCC
Confidence 4888999999999999875 543
No 42
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=25.72 E-value=88 Score=26.93 Aligned_cols=39 Identities=23% Similarity=0.285 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCK 65 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr 65 (270)
+.||++.+..|-.+|.+- ...-.|+..|. |+.|++..=+
T Consensus 1 M~Wtde~~~~L~~lw~~G-----------~SasqIA~~lg--~vsRnAViGk 39 (162)
T PF07750_consen 1 MSWTDERVERLRKLWAEG-----------LSASQIARQLG--GVSRNAVIGK 39 (162)
T ss_pred CCCCHHHHHHHHHHHHcC-----------CCHHHHHHHhC--Ccchhhhhhh
Confidence 479999999999999872 34456777665 5777776533
No 43
>PRK07217 replication factor A; Reviewed
Probab=24.97 E-value=1e+02 Score=29.58 Aligned_cols=33 Identities=15% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhh
Q 024274 44 IWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYK 76 (270)
Q Consensus 44 lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK 76 (270)
+=+.|+.++..+|...+...+..++.+|...|+
T Consensus 7 ~aeei~~~~s~lgvdv~~~~ie~~L~~Lv~ey~ 39 (311)
T PRK07217 7 HAEEIHEQFSDLGVDVSVEDVEERLDTLVTEFK 39 (311)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcC
Confidence 456788889999999999999999999998886
No 44
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=24.83 E-value=6.3e+02 Score=27.78 Aligned_cols=56 Identities=25% Similarity=0.220 Sum_probs=32.0
Q ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024274 180 GIHEMLKAFF---DQQQRMEVEWRQMMERRAQERQLFEEEWRQRMEKLERERLLVEQAW 235 (270)
Q Consensus 180 ~~~~~~~~~~---~~q~~~~~~~~e~~e~~e~er~~~Ee~Wr~~m~~~e~eR~~~e~~~ 235 (270)
..+.+|.++= +||.+=...++..=|-.|.||..+|.+=.++-|..|..|+..|.+-
T Consensus 904 ~~e~~~~~l~sk~~q~~~e~er~rk~qE~~E~ER~rrEaeek~rre~ee~k~~k~e~e~ 962 (1259)
T KOG0163|consen 904 NYEKLVKRLDSKEQQQIEELERLRKIQELAEAERKRREAEEKRRREEEEKKRAKAEMET 962 (1259)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4455555544 2333334666677777778888877766555454455555444433
No 45
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=23.79 E-value=1.6e+02 Score=26.51 Aligned_cols=51 Identities=20% Similarity=0.404 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHH-HHHHhhh
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKN-LVNRYKG 77 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kwkn-Lk~~YK~ 77 (270)
...||.+|...+|.+.+-+- .-|..||..|-- ||--.+++=|.. |++++..
T Consensus 62 rg~fT~eEe~~Ii~lH~~~G----------NrWs~IA~~LPG----RTDNeIKN~Wnt~lkkkl~~ 113 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLG----------NRWSLIAGRLPG----RTDNEVKNHWNTHLKKKLLK 113 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHC----------cHHHHHHhhCCC----cCHHHHHHHHHHHHHHHHHH
Confidence 46899999999999888754 339999998754 788888887865 4555554
No 46
>PF11600 CAF-1_p150: Chromatin assembly factor 1 complex p150 subunit, N-terminal; InterPro: IPR021644 P150 is a polypeptide subunit of CAF-1, which functions in depositing newly synthesised and acetylated histones H3/H4 into chromatin during DNA replication and repair [].P150 is the HP1 interaction site of CAF-1 and lies within the N-terminal region of the protein [].
Probab=22.57 E-value=5.5e+02 Score=22.77 Aligned_cols=35 Identities=34% Similarity=0.497 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 024274 231 VEQAWREKEEQRRIREES-RAERRDALLTTLLTKLI 265 (270)
Q Consensus 231 ~e~~~~~re~~~r~re~~-~~~~r~~~~~~~l~kl~ 265 (270)
++.+-+.+|++.+..+++ +.-.+.+.|..|+.+..
T Consensus 155 k~eek~~keeekr~~eE~~~~k~~q~~~~~FF~k~~ 190 (216)
T PF11600_consen 155 KEEEKRKKEEEKRKKEEEKRLKKEQARITSFFKKPK 190 (216)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCC
Confidence 333444455555555555 44556888999998754
No 47
>PF14818 DUF4482: Domain of unknown function (DUF4482)
Probab=20.00 E-value=2e+02 Score=24.54 Aligned_cols=21 Identities=29% Similarity=0.741 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 024274 200 RQMMERRAQERQLFEEEWRQR 220 (270)
Q Consensus 200 ~e~~e~~e~er~~~Ee~Wr~~ 220 (270)
+|.|+++..||...|.+|+.-
T Consensus 19 ~ELLdrfd~ER~eWE~Q~kem 39 (141)
T PF14818_consen 19 MELLDRFDRERQEWEQQWKEM 39 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999853
Done!