Query 024274
Match_columns 270
No_of_seqs 220 out of 613
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 05:24:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebi_A DNA binding protein GT- 99.9 1.5E-24 5E-29 166.2 8.5 84 11-94 2-86 (86)
2 3sjm_A Telomeric repeat-bindin 97.9 1.3E-05 4.4E-10 57.8 5.1 51 11-73 9-60 (64)
3 1w0t_A Telomeric repeat bindin 97.8 3.8E-05 1.3E-09 52.8 5.4 48 14-73 3-51 (53)
4 1ity_A TRF1; helix-turn-helix, 97.7 6.6E-05 2.3E-09 54.4 6.4 56 7-74 4-60 (69)
5 2din_A Cell division cycle 5-l 97.5 0.00066 2.3E-08 48.5 8.4 52 11-77 7-58 (66)
6 2elk_A SPCC24B10.08C protein; 97.3 0.00071 2.4E-08 47.4 7.2 47 13-71 9-55 (58)
7 1x41_A Transcriptional adaptor 97.3 0.00054 1.8E-08 48.3 6.5 52 7-71 2-53 (60)
8 2d9a_A B-MYB, MYB-related prot 97.3 0.0003 1E-08 49.3 5.0 53 7-72 2-54 (60)
9 2dim_A Cell division cycle 5-l 97.3 0.00038 1.3E-08 50.4 5.5 52 7-71 3-54 (70)
10 2cu7_A KIAA1915 protein; nucle 97.3 0.00072 2.5E-08 49.3 6.7 56 6-75 2-57 (72)
11 2cjj_A Radialis; plant develop 97.2 0.00064 2.2E-08 52.5 6.2 56 14-79 9-64 (93)
12 1guu_A C-MYB, MYB proto-oncoge 97.2 0.00053 1.8E-08 46.6 4.7 47 13-72 3-49 (52)
13 2juh_A Telomere binding protei 97.1 0.0031 1.1E-07 50.9 9.9 60 6-74 10-69 (121)
14 2cqq_A RSGI RUH-037, DNAJ homo 97.0 0.0024 8.1E-08 47.0 7.2 51 13-74 8-58 (72)
15 2roh_A RTBP1, telomere binding 97.0 0.0023 8E-08 51.7 7.5 58 8-74 26-83 (122)
16 1gvd_A MYB proto-oncogene prot 96.9 0.00076 2.6E-08 45.9 3.5 45 14-71 4-48 (52)
17 2yum_A ZZZ3 protein, zinc fing 96.9 0.0037 1.3E-07 45.6 7.3 58 7-72 2-59 (75)
18 2yus_A SWI/SNF-related matrix- 96.8 0.0012 4.1E-08 49.4 4.6 46 12-71 17-62 (79)
19 2llk_A Cyclin-D-binding MYB-li 96.7 0.0018 6.3E-08 47.8 4.9 47 12-73 22-68 (73)
20 2ckx_A NGTRF1, telomere bindin 96.7 0.0032 1.1E-07 47.6 5.8 51 15-74 2-52 (83)
21 2cqr_A RSGI RUH-043, DNAJ homo 96.5 0.0054 1.8E-07 45.2 5.8 51 13-73 18-68 (73)
22 2aje_A Telomere repeat-binding 96.3 0.0032 1.1E-07 49.6 3.9 57 8-74 8-65 (105)
23 2k9n_A MYB24; R2R3 domain, DNA 96.2 0.013 4.5E-07 45.5 7.0 49 13-75 53-101 (107)
24 2ltp_A Nuclear receptor corepr 95.1 0.00097 3.3E-08 50.8 0.0 55 7-75 10-64 (89)
25 3osg_A MYB21; transcription-DN 96.0 0.0081 2.8E-07 48.0 5.3 49 13-75 62-110 (126)
26 1x58_A Hypothetical protein 49 95.9 0.015 5E-07 41.8 5.4 52 10-73 5-57 (62)
27 3osg_A MYB21; transcription-DN 95.7 0.013 4.5E-07 46.8 5.3 50 9-72 7-56 (126)
28 2k9n_A MYB24; R2R3 domain, DNA 95.6 0.012 4.3E-07 45.6 4.6 45 14-71 2-46 (107)
29 1gv2_A C-MYB, MYB proto-oncoge 95.5 0.012 4.1E-07 45.3 4.0 48 12-73 55-102 (105)
30 1gv2_A C-MYB, MYB proto-oncoge 95.1 0.015 5.3E-07 44.6 3.5 45 14-71 5-49 (105)
31 1h8a_C AMV V-MYB, MYB transfor 95.0 0.024 8.1E-07 45.2 4.5 47 12-71 26-72 (128)
32 1ug2_A 2610100B20RIK gene prod 94.8 0.12 4E-06 39.8 7.6 64 6-80 26-89 (95)
33 1h8a_C AMV V-MYB, MYB transfor 94.1 0.025 8.6E-07 45.1 2.7 48 12-73 78-125 (128)
34 3zqc_A MYB3; transcription-DNA 93.9 0.029 1E-06 45.0 2.7 47 14-74 55-101 (131)
35 3hm5_A DNA methyltransferase 1 93.4 0.14 4.7E-06 39.4 5.6 56 14-79 31-87 (93)
36 1h89_C C-MYB, MYB proto-oncoge 93.2 0.078 2.7E-06 43.7 4.2 47 12-71 57-103 (159)
37 2lr8_A CAsp8-associated protei 92.0 0.02 6.7E-07 41.8 0.0 61 7-79 8-68 (70)
38 2eqr_A N-COR1, N-COR, nuclear 92.6 0.27 9.2E-06 34.4 5.7 50 5-68 4-53 (61)
39 3zqc_A MYB3; transcription-DNA 92.5 0.044 1.5E-06 43.9 1.8 46 14-72 3-48 (131)
40 1wgx_A KIAA1903 protein; MYB D 91.9 0.24 8.2E-06 36.4 5.0 51 14-74 9-59 (73)
41 1h89_C C-MYB, MYB proto-oncoge 91.7 0.11 3.8E-06 42.7 3.3 48 12-73 109-156 (159)
42 1ign_A Protein (RAP1); RAP1,ye 90.8 0.18 6.1E-06 45.1 3.9 51 14-73 9-60 (246)
43 2iw5_B Protein corest, REST co 86.9 0.7 2.4E-05 41.0 4.8 45 11-69 131-175 (235)
44 4iej_A DNA methyltransferase 1 84.6 1.8 6.1E-05 33.2 5.5 56 14-79 31-87 (93)
45 2yqk_A Arginine-glutamic acid 71.8 12 0.00041 26.0 6.2 46 7-65 3-48 (63)
46 2xag_B REST corepressor 1; ami 69.9 3.9 0.00013 39.8 4.4 44 11-68 378-421 (482)
47 1fex_A TRF2-interacting telome 58.3 23 0.0008 24.3 5.5 54 13-70 2-55 (59)
48 2c9l_Y EB1, zebra, BZLF1 trans 52.8 9.1 0.00031 26.5 2.5 18 61-78 13-30 (63)
49 2crg_A Metastasis associated p 44.9 24 0.00082 25.0 3.9 47 7-66 2-48 (70)
50 4eef_G F-HB80.4, designed hema 41.5 1.8 6.3E-05 31.8 -2.6 45 13-67 20-64 (74)
51 1irz_A ARR10-B; helix-turn-hel 30.6 1.4E+02 0.0048 20.9 6.8 53 9-70 3-55 (64)
52 2cuf_A FLJ21616 protein; homeo 27.6 1.8E+02 0.006 21.1 6.8 70 4-79 2-81 (95)
53 1ij5_A Plasmodial specific LAV 22.3 1.2E+02 0.0039 27.0 5.3 34 186-219 15-48 (323)
54 4a69_C Nuclear receptor corepr 22.1 67 0.0023 24.0 3.1 39 13-65 43-81 (94)
No 1
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=99.91 E-value=1.5e-24 Score=166.18 Aligned_cols=84 Identities=36% Similarity=0.745 Sum_probs=78.4
Q ss_pred cCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhccCCCCCCC-CC
Q 024274 11 AQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKETSDPDSGR-QC 89 (270)
Q Consensus 11 ~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k~~~~~~g~-~~ 89 (270)
.|.++||++||++||.||++++..|..++++..+|+.||..|.++||+|||.||++||+||++.|+++++++..+|. +|
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG~~~~ 81 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKEFKKAKHHDRGNGSAKM 81 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCSCSSCCCCCCCCCC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence 57899999999999999999999999989999999999999999999999999999999999999999988765554 99
Q ss_pred CCHHH
Q 024274 90 PFFNE 94 (270)
Q Consensus 90 ~fFde 94 (270)
|||++
T Consensus 82 ~yf~e 86 (86)
T 2ebi_A 82 SYYKE 86 (86)
T ss_dssp CCCCC
T ss_pred CCCCc
Confidence 99975
No 2
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.91 E-value=1.3e-05 Score=57.84 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=39.7
Q ss_pred cCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHH
Q 024274 11 AQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGY-SRTPDQCKCKWKNLVN 73 (270)
Q Consensus 11 ~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy-~Rsa~QCr~KwknLk~ 73 (270)
.+...||.+|-..|+.+...+- ..-|..||..+ +| .||+.||+++|.||.+
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G---------~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYG---------EGNWAAISKNY---PFVNRTAVMIKDRWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHC---------TTCHHHHHHHS---CCSSCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccC---------CCchHHHHhhc---CCCCCCHHHHHHHHHHHhc
Confidence 3446899999999999887642 12499998753 44 5999999999999875
No 3
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.77 E-value=3.8e-05 Score=52.84 Aligned_cols=48 Identities=19% Similarity=0.351 Sum_probs=39.9
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGY-SRTPDQCKCKWKNLVN 73 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy-~Rsa~QCr~KwknLk~ 73 (270)
.+||.+|...|+.+...+. ..-|..||..| +| .||+.||+++|.||.+
T Consensus 3 ~~WT~eEd~~L~~~v~~~G---------~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~~k 51 (53)
T 1w0t_A 3 QAWLWEEDKNLRSGVRKYG---------EGNWSKILLHY---KFNNRTSVMLKDRWRTMKK 51 (53)
T ss_dssp CCCCHHHHHHHHHHHHHHC---------TTCHHHHHHHS---CCSSCCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHc---CCCCCCHHHHHHHHHHHHc
Confidence 5899999999999887642 13699999976 56 5999999999999874
No 4
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.73 E-value=6.6e-05 Score=54.38 Aligned_cols=56 Identities=16% Similarity=0.281 Sum_probs=44.3
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHHH
Q 024274 7 SSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGY-SRTPDQCKCKWKNLVNR 74 (270)
Q Consensus 7 s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy-~Rsa~QCr~KwknLk~~ 74 (270)
.+.......||.+|...||.+...+. ..-|..||..| +| .||+.||+.+|.|+.+.
T Consensus 4 ~~~~~~r~~WT~eED~~L~~~v~~~G---------~~~W~~Ia~~~---~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 4 KHRARKRQAWLWEEDKNLRSGVRKYG---------EGNWSKILLHY---KFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp TTCSSSCCCCCHHHHHHHHHHHHHHC---------SSCHHHHHHHS---CCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC---------CCcHHHHHHHc---CcCCCCHHHHHHHHHHHcCC
Confidence 34455567899999999999887641 13699999976 46 79999999999998753
No 5
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.46 E-value=0.00066 Score=48.54 Aligned_cols=52 Identities=23% Similarity=0.496 Sum_probs=40.8
Q ss_pred cCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhh
Q 024274 11 AQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKG 77 (270)
Q Consensus 11 ~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~ 77 (270)
-....||.+|-..||.+...+ + .-|..||. |. | ||+.||+++|.++...-.+
T Consensus 7 ~~k~~WT~eED~~L~~~~~~~-----g-----~~W~~Ia~-~~--g--Rt~~qcr~Rw~~~l~~~~~ 58 (66)
T 2din_A 7 GKKTEWSREEEEKLLHLAKLM-----P-----TQWRTIAP-II--G--RTAAQCLEHYEFLLDKAAQ 58 (66)
T ss_dssp SSCCCCCHHHHHHHHHHHHHC-----T-----TCHHHHHH-HH--S--SCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHc-----C-----CCHHHHhc-cc--C--cCHHHHHHHHHHHhChHhc
Confidence 344689999999999985542 1 36999999 65 5 9999999999998765443
No 6
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.34 E-value=0.00071 Score=47.43 Aligned_cols=47 Identities=19% Similarity=0.330 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
...||.+|-..||.+...+. ..-|..||..|. -.||+.||+.+|.++
T Consensus 9 ~~~WT~eED~~L~~~v~~~G---------~~~W~~IA~~~~---~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLG---------LGNWADIADYVG---NARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTT---------TTCHHHHHHHHC---SSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHHC---CCCCHHHHHHHHHHH
Confidence 45799999999999887642 146999999873 369999999999875
No 7
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.33 E-value=0.00054 Score=48.28 Aligned_cols=52 Identities=17% Similarity=0.339 Sum_probs=41.0
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 7 SSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 7 s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
|+..-....||.+|-..||.+...+- ..-|..||..|. .||+.||+.+|.++
T Consensus 2 ss~~~~~~~WT~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~r~~~~ 53 (60)
T 1x41_A 2 SSGSSGDPSWTAQEEMALLEAVMDCG---------FGNWQDVANQMC----TKTKEECEKHYMKY 53 (60)
T ss_dssp CCCCCCCSSSCHHHHHHHHHHHHHTC---------TTCHHHHHHHHT----TSCHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC---------cCcHHHHHHHhC----CCCHHHHHHHHHHH
Confidence 34445557899999999999876642 136999999983 49999999999875
No 8
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.31 E-value=0.0003 Score=49.35 Aligned_cols=53 Identities=25% Similarity=0.581 Sum_probs=41.4
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 024274 7 SSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV 72 (270)
Q Consensus 7 s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk 72 (270)
|++.-....||.+|-..||.+...+- ..-|..||..|. .||+.||+.+|.++.
T Consensus 2 s~p~~~k~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 2 SSGSSGKVKWTHEEDEQLRALVRQFG---------QQDWKFLASHFP----NRTDQQCQYRWLRVL 54 (60)
T ss_dssp CSCCCCCSCCCHHHHHHHHHHHHHTC---------TTCHHHHHHHCS----SSCHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHcc----CCCHHHHHHHHHHHc
Confidence 34455567999999999999887642 136999999863 599999999998753
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.29 E-value=0.00038 Score=50.39 Aligned_cols=52 Identities=23% Similarity=0.448 Sum_probs=41.8
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 7 SSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 7 s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
|...-+...||.+|-..|+.+...+- ..-|..||..|. .||+.||+.+|.+.
T Consensus 3 s~~~~k~~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 54 (70)
T 2dim_A 3 SGSSGKGGVWRNTEDEILKAAVMKYG---------KNQWSRIASLLH----RKSAKQCKARWYEW 54 (70)
T ss_dssp SCSCSTTCCCCHHHHHHHHHHHHHTC---------SSCHHHHHHHST----TCCHHHHHHHHHHT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHC---------cCCHHHHHHHhc----CCCHHHHHHHHHHH
Confidence 45555667999999999999887642 136999999875 69999999999874
No 10
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.26 E-value=0.00072 Score=49.28 Aligned_cols=56 Identities=23% Similarity=0.201 Sum_probs=44.5
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHh
Q 024274 6 SSSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRY 75 (270)
Q Consensus 6 ~s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~Y 75 (270)
++++.-....||.+|-..||.+...+. .-|..||..|. .||+.||++.|.++.+..
T Consensus 2 s~~p~~~~~~WT~eEd~~l~~~~~~~G----------~~W~~Ia~~~~----~Rt~~q~k~r~~~~l~~~ 57 (72)
T 2cu7_A 2 SSGSSGYSVKWTIEEKELFEQGLAKFG----------RRWTKISKLIG----SRTVLQVKSYARQYFKNK 57 (72)
T ss_dssp CCCCSSCCCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHHH
Confidence 345556678999999999999887642 37999999763 499999999999876543
No 11
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=97.20 E-value=0.00064 Score=52.51 Aligned_cols=56 Identities=21% Similarity=0.360 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhc
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKE 79 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k 79 (270)
..||.+|-..|+.....+.. -...-|..||..|- .||+.||+.+|++|...-+.+.
T Consensus 9 ~~WT~eEd~~L~~al~~~~~------~~~~rW~~IA~~vp----GRT~~q~k~ry~~l~~dv~~ie 64 (93)
T 2cjj_A 9 RPWSAKENKAFERALAVYDK------DTPDRWANVARAVE----GRTPEEVKKHYEILVEDIKYIE 64 (93)
T ss_dssp CSCCHHHHHHHHHHHHHSCT------TCTTHHHHHHHHST----TCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC------CCCchHHHHHHHcC----CCCHHHHHHHHHHHHHHHHHhh
Confidence 57999999999888765321 12367999999874 3999999999999987755443
No 12
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.15 E-value=0.00053 Score=46.65 Aligned_cols=47 Identities=23% Similarity=0.594 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV 72 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk 72 (270)
...||.+|-..|+.+...+. ..-|..||..|. .||+.||+.+|.++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNG---------TDDWKVIANYLP----NRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHC---------SSCHHHHHHTST----TCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC---------CCCHHHHHHHcC----CCCHHHHHHHHHHHc
Confidence 36899999999999987642 125999999863 599999999999875
No 13
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=97.14 E-value=0.0031 Score=50.94 Aligned_cols=60 Identities=22% Similarity=0.235 Sum_probs=46.7
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHH
Q 024274 6 SSSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR 74 (270)
Q Consensus 6 ~s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~ 74 (270)
..+.......||.+|...|+.....+-. .-|..|+..+...--.||+.+|++||.||.+.
T Consensus 10 ~~~~rr~r~~WT~EEd~~L~~gV~k~G~---------G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~ 69 (121)
T 2juh_A 10 ELSQRRIRRPFSVAEVEALVEAVEHLGT---------GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 69 (121)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHHHHGG---------GCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHHHHHCC---------CCHHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 3455666789999999999999887531 36999988764321379999999999999874
No 14
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.98 E-value=0.0024 Score=47.00 Aligned_cols=51 Identities=25% Similarity=0.384 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHH
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR 74 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~ 74 (270)
...||.+|-..|+..... |.... ..-|+.||..| | ||+.+|+.+|+.|...
T Consensus 8 ~~~WT~eE~k~fe~al~~----~p~~t--~~RW~~IA~~l---g--Rt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVK----FPGGT--PGRWEKIAHEL---G--RSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCHHHHHHHHHHHHH----SCTTC--TTHHHHHHHHH---T--SCHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHH----CCCCC--CcHHHHHHHHh---C--CCHHHHHHHHHHHHHh
Confidence 458999999999988764 33211 24699999997 4 9999999999999765
No 15
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=96.95 E-value=0.0023 Score=51.74 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=44.3
Q ss_pred CCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHH
Q 024274 8 SAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR 74 (270)
Q Consensus 8 ~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~ 74 (270)
........||.+|+..|+.....+-. .-|..|+..+...=-.||+.||++||.||.+.
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~---------g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~ 83 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT---------GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS---------SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---------CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 34455689999999999998887521 36999998653211279999999999999864
No 16
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.88 E-value=0.00076 Score=45.90 Aligned_cols=45 Identities=27% Similarity=0.626 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
..||.+|-..|+.+...+. ..-|..||..|. .||+.||+.+|.+.
T Consensus 4 ~~Wt~eED~~L~~~v~~~G---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 4 GPWTKEEDQRLIKLVQKYG---------PKRWSVIAKHLK----GRIGKQCRERWHNH 48 (52)
T ss_dssp CSCCHHHHHHHHHHHHHHC---------TTCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHC---------cChHHHHHHHcC----CCCHHHHHHHHHHH
Confidence 5899999999999887642 135999998763 69999999999874
No 17
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.85 E-value=0.0037 Score=45.64 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=42.5
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 024274 7 SSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV 72 (270)
Q Consensus 7 s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk 72 (270)
|++.-....||.+|-..|+.+...+- .......-|..||..|. .||+.||+.+|.++.
T Consensus 2 s~p~~~~~~WT~eEd~~L~~~v~~~g----~~~~~~~~W~~IA~~~~----~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 2 SSGSSGNQLWTVEEQKKLEQLLIKYP----PEEVESRRWQKIADELG----NRTAKQVASQVQKYF 59 (75)
T ss_dssp CCCCCCSSCCCHHHHHHHHHHHHHSC----CCSCHHHHHHHHHHHHS----SSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhC----CCCCCcccHHHHHHHhC----CCCHHHHHHHHHHHH
Confidence 44455567899999999998876532 11112267999999984 499999999997543
No 18
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=96.84 E-value=0.0012 Score=49.37 Aligned_cols=46 Identities=28% Similarity=0.423 Sum_probs=38.1
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
....||.+|...||.....+. .-|..||..|. .||+.||+.+|.+|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G----------~~W~~IA~~v~----~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK----------DDWNKVSEHVG----SRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS----------SCHHHHHHHHS----SCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHHHh
Confidence 357999999999999876532 46999999874 59999999999865
No 19
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.74 E-value=0.0018 Score=47.76 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=39.2
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVN 73 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~ 73 (270)
....||.+|-..||.+...+- .-|..||..| .||+.||+++|..|+.
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G----------~kW~~IA~~l-----gRt~~q~knRw~~L~~ 68 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHG----------NDWATIGAAL-----GRSASSVKDRCRLMKD 68 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHS----------SCHHHHHHHH-----TSCHHHHHHHHHHCSC
T ss_pred CCCCCCHHHHHHHHHHHHHHC----------CCHHHHHHHh-----CCCHHHHHHHHHHHHH
Confidence 346899999999999987742 2399999998 5999999999998754
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=96.66 E-value=0.0032 Score=47.56 Aligned_cols=51 Identities=24% Similarity=0.306 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHH
Q 024274 15 QWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR 74 (270)
Q Consensus 15 ~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~ 74 (270)
.||.+|...|+.....+. ..-|..|+..-...=-.||+.+|++||.||.+.
T Consensus 2 ~WT~eEd~~L~~gv~k~G---------~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~ 52 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLG---------TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT 52 (83)
T ss_dssp CCCHHHHHHHHHHHHHHC---------SSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHC---------CCCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence 699999999999887752 126999988521100269999999999999863
No 21
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=96.47 E-value=0.0054 Score=45.23 Aligned_cols=51 Identities=18% Similarity=0.424 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVN 73 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~ 73 (270)
...||.+|-..|+.+...+.. -...-|..||..|- .||+.||+.+|.+|..
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~------~~~~rW~~IA~~vp----GRT~~qcr~Ry~~L~~ 68 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPR------GSSDCWDKIARCVP----SKSKEDCIARYKLLVS 68 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCS------SSHHHHHHHGGGCS----SSCHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHcCC------CCCchHHHHHHHcC----CCCHHHHHHHHHHHHH
Confidence 367999999999988765421 12367999998763 5999999999999864
No 22
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.27 E-value=0.0032 Score=49.64 Aligned_cols=57 Identities=23% Similarity=0.225 Sum_probs=42.3
Q ss_pred CCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHHH
Q 024274 8 SAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERG-YSRTPDQCKCKWKNLVNR 74 (270)
Q Consensus 8 ~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~G-y~Rsa~QCr~KwknLk~~ 74 (270)
+.......||.+|+..|+.....+-. .-|..|+..+.. - -.||+.+|++||.||.+.
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~---------g~W~~I~~~~~~-~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGT---------GRWRDVKLCAFE-DADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCS---------SSHHHHHSSSSS-STTCCCHHHHHHHHHHHHHT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC---------CChHHHHHHhcc-ccCCCCHHHHHHHHHHHHhh
Confidence 34455689999999999998876521 269998774311 1 269999999999999864
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.18 E-value=0.013 Score=45.45 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHh
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRY 75 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~Y 75 (270)
..+||.+|-..||.+...+. .-|..||..|. .||+.||+++|.+|.+.-
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYG----------PKWNKISKFLK----NRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTC----------SCHHHHHHHHS----SSCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHhhH
Confidence 46899999999999887642 35999999873 599999999999998753
No 24
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=95.08 E-value=0.00097 Score=50.77 Aligned_cols=55 Identities=22% Similarity=0.226 Sum_probs=43.4
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHh
Q 024274 7 SSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRY 75 (270)
Q Consensus 7 s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~Y 75 (270)
.++.-....||.+|-..||.+...+. .-|..||..|. .||+.||++.|.++.+.+
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G----------~~W~~IA~~l~----gRt~~q~k~r~~~~lrk~ 64 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHG----------RNWSAIARMVG----SKTVSQCKNFYFNYKKRQ 64 (89)
Confidence 34444557899999999999887752 34999999874 599999999999876654
No 25
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=96.04 E-value=0.0081 Score=48.05 Aligned_cols=49 Identities=24% Similarity=0.412 Sum_probs=40.3
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHh
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRY 75 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~Y 75 (270)
...||.+|-..||.+...+. .-|..||..|. .||+.||+++|.+|.+.+
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~l~~k~ 110 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYG----------RQWAIIAKFFP----GRTDIHIKNRWVTISNKL 110 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHhc
Confidence 35899999999999987752 24999997542 599999999999998764
No 26
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=95.87 E-value=0.015 Score=41.76 Aligned_cols=52 Identities=13% Similarity=0.136 Sum_probs=40.8
Q ss_pred CcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHH
Q 024274 10 HAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGY-SRTPDQCKCKWKNLVN 73 (270)
Q Consensus 10 ~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy-~Rsa~QCr~KwknLk~ 73 (270)
.....+||.+|+..||.....+- .-|..|+..-. -+ .||...+++||.||.+
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G----------~~W~~I~~~y~--f~~~RT~VdLKdk~r~L~k 57 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMG----------NHWNSILWSFP--FQKGRRAVDLAHKYHRLIS 57 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHC----------SCHHHHHHHSC--CCTTCCHHHHHHHHHHHHT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHh----------HhHHHHHHhCC--CccCcccchHHHHHHHHHh
Confidence 34558999999999999888752 36998876421 13 7999999999999985
No 27
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=95.74 E-value=0.013 Score=46.78 Aligned_cols=50 Identities=24% Similarity=0.539 Sum_probs=39.7
Q ss_pred CCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 024274 9 AHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV 72 (270)
Q Consensus 9 ~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk 72 (270)
.......||.+|-..|+.+...+ | .-|..||..|. .||+.||+.+|.|..
T Consensus 7 ~~~kk~~WT~eED~~L~~~v~~~-----G-----~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 7 KAAKKQKFTPEEDEMLKRAVAQH-----G-----SDWKMIAATFP----NRNARQCRDRWKNYL 56 (126)
T ss_dssp CBCSSCCCCHHHHHHHHHHHHHH-----T-----TCHHHHHHTCT----TCCHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHh-----C-----CCHHHHHHHcC----CCCHHHHHHHHhhhc
Confidence 34455789999999999998764 2 25999998653 599999999999754
No 28
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.61 E-value=0.012 Score=45.58 Aligned_cols=45 Identities=27% Similarity=0.489 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
..||.+|-..|+.+...+. ..-|..||..|. .||+.||+.+|.|.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~ 46 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYG---------AKDWIRISQLMI----TRNPRQCRERWNNY 46 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHC---------SSCHHHHHHHTT----TSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHC---------CCCHHHHhhhcC----CCCHHHHHHHHHHH
Confidence 4799999999999887642 136999999874 69999999999874
No 29
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.49 E-value=0.012 Score=45.30 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVN 73 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~ 73 (270)
....||.+|-..||.+...+. .-|..||..|. .||+.||+++|.+|.+
T Consensus 55 ~~~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~~~ 102 (105)
T 1gv2_A 55 KKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 102 (105)
T ss_dssp CCCCCCHHHHHHHHHHHHHHS----------SCHHHHHTTCT----TCCHHHHHHHHHHHTC
T ss_pred cccCCCHHHHHHHHHHHHHhC----------CCHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 346899999999999887642 35999997542 5999999999998764
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.09 E-value=0.015 Score=44.64 Aligned_cols=45 Identities=24% Similarity=0.608 Sum_probs=36.6
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
..||.+|...|+.+...+.. .-|..||..|. .||+.||+.+|.++
T Consensus 5 ~~WT~eED~~L~~~v~~~g~---------~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 49 (105)
T 1gv2_A 5 GPWTKEEDQRVIKLVQKYGP---------KRWSVIAKHLK----GRIGKQCRERWHNH 49 (105)
T ss_dssp SCCCHHHHHHHHHHHHHHCT---------TCHHHHHTTST----TCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhCC---------CcHHHHhhhhc----CCCHHHHHHHHHhc
Confidence 57999999999998876421 35999998763 69999999999874
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=94.98 E-value=0.024 Score=45.23 Aligned_cols=47 Identities=23% Similarity=0.501 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
....||.+|...|+.+...+. ..-|..||..|. .||+.||+.+|.++
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 72 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYG---------PKRWSDIAKHLK----GRIGKQCRERWHNH 72 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTC---------SCCHHHHHHHSS----SCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHC---------CCCHHHHHHHhc----CCcHHHHHHHHHHh
Confidence 346899999999999886642 125999999863 69999999999873
No 32
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=94.79 E-value=0.12 Score=39.79 Aligned_cols=64 Identities=19% Similarity=0.378 Sum_probs=51.7
Q ss_pred CCCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhcc
Q 024274 6 SSSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKET 80 (270)
Q Consensus 6 ~s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k~ 80 (270)
-++.++...-||+++=..+|...... ......|-.||..|.. |++.|.+++|..|.+.|.+...
T Consensus 26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~-------G~s~~tFa~iA~~L~N----ks~nqV~~RFq~Lm~Lf~~~~~ 89 (95)
T 1ug2_A 26 VSSTGEKVVLWTREADRVILTMCQEQ-------GAQPHTFSVISQQLGN----KTPVEVSHRFRELMQLFHTACE 89 (95)
T ss_dssp CCCCCCCCSSSCHHHHHHHHHHHHHT-------TSCTTTHHHHHHHHSS----CCHHHHHHHHHHHHHHHHHCSS
T ss_pred ecCCCCEEEEeccccCHHHHHHHHhc-------CCChhHHHHHHHHHcc----CCHHHHHHHHHHHHHHHHHHhc
Confidence 35678888999999998888766553 3445789999999864 8999999999999999997543
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=94.11 E-value=0.025 Score=45.09 Aligned_cols=48 Identities=21% Similarity=0.428 Sum_probs=38.7
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVN 73 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~ 73 (270)
....||.+|-..||.+...+. .-|..||..|. .||+.||+++|.+|.+
T Consensus 78 ~~~~WT~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~r~~~~~~ 125 (128)
T 1h8a_C 78 KKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAVKNHWNSTMR 125 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC----------SCHHHHGGGST----TCCHHHHHHHHHTTTT
T ss_pred ccccCCHHHHHHHHHHHHHHC----------cCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 346899999999999987652 35999997542 5999999999998754
No 34
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=93.92 E-value=0.029 Score=44.99 Aligned_cols=47 Identities=17% Similarity=0.434 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR 74 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~ 74 (270)
..||.+|-..||.+...+. .-|..||..|. .||+.||+++|.++.+.
T Consensus 55 ~~Wt~eEd~~L~~~~~~~G----------~~W~~Ia~~l~----gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 55 HAWTPEEDETIFRNYLKLG----------SKWSVIAKLIP----GRTDNAIKNRWNSSISK 101 (131)
T ss_dssp SCCCHHHHHHHHHHHHHSC----------SCHHHHTTTST----TCCHHHHHHHHHHTTGG
T ss_pred CCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHHHHHHH
Confidence 4799999999999886642 24999987543 69999999999987643
No 35
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=93.42 E-value=0.14 Score=39.45 Aligned_cols=56 Identities=11% Similarity=0.285 Sum_probs=47.5
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCC-CCCHHhHHHHHHHHHHHhhhhc
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGY-SRTPDQCKCKWKNLVNRYKGKE 79 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy-~Rsa~QCr~KwknLk~~YK~~k 79 (270)
..||.+||..|+.+....+ .-|-.|+..+.-.++ .||....+++|-.+.+.....+
T Consensus 31 ~~WTkEETd~Lf~L~~~fd----------lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r 87 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFD----------LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT----------TCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC----------CCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 7999999999999998875 457789988865554 6999999999999998877665
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=93.19 E-value=0.078 Score=43.68 Aligned_cols=47 Identities=23% Similarity=0.568 Sum_probs=37.5
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHH
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNL 71 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknL 71 (270)
....||.+|-..||.+...+. ..-|..||..|. .||+.||+.+|.++
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g---------~~~W~~Ia~~l~----~Rt~~qcr~Rw~~~ 103 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYG---------PKRWSVIAKHLK----GRIGKQCRERWHNH 103 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC---------SCCHHHHHHTST----TCCHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHHHhC---------cccHHHHHHHcC----CCCHHHHHHHHHHH
Confidence 346899999999999886542 124999998763 59999999999874
No 37
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=91.98 E-value=0.02 Score=41.85 Aligned_cols=61 Identities=11% Similarity=0.343 Sum_probs=48.5
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHHhhhhc
Q 024274 7 SSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNRYKGKE 79 (270)
Q Consensus 7 s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~YK~~k 79 (270)
++.+.....||.++=..+|...... +.....|..||..| +||+.|+.++|..|.+.|.+.+
T Consensus 8 ~~~ge~vvlWTReeDR~IL~~cq~~-------G~s~~tfa~iA~~L-----nks~~QV~~RF~~Lm~Lf~kSk 68 (70)
T 2lr8_A 8 KKKGEIIILWTRNDDRVILLECQKR-------GPSSKTFAYLAAKL-----DKNPNQVSERFQQLMKLFEKSK 68 (70)
Confidence 4567778899999988877655542 33447899999877 5999999999999999998754
No 38
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.59 E-value=0.27 Score=34.38 Aligned_cols=50 Identities=12% Similarity=0.158 Sum_probs=37.7
Q ss_pred CCCCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 024274 5 SSSSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKW 68 (270)
Q Consensus 5 ~~s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kw 68 (270)
++....+....||.+|-..|+...... +.-|..||..|. .||+.||..-|
T Consensus 4 ~~~~~r~~~~~WT~eE~~~F~~~~~~~----------gk~w~~Ia~~l~----~rt~~~~v~~Y 53 (61)
T 2eqr_A 4 GSSGDRQFMNVWTDHEKEIFKDKFIQH----------PKNFGLIASYLE----RKSVPDCVLYY 53 (61)
T ss_dssp SCCCCCSCCCSCCHHHHHHHHHHHHHS----------TTCHHHHHHHCT----TSCHHHHHHHH
T ss_pred ccccccccCCCCCHHHHHHHHHHHHHh----------CCCHHHHHHHcC----CCCHHHHHHHH
Confidence 345556778999999999999887764 146999986543 59999997543
No 39
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=92.55 E-value=0.044 Score=43.91 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLV 72 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk 72 (270)
..||.+|-..|+.+...+. ..-|..||..|. .||+.||+.+|.|..
T Consensus 3 g~Wt~eED~~L~~~v~~~g---------~~~W~~Ia~~~~----~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 3 GPFTEAEDDLIREYVKENG---------PQNWPRITSFLP----NRSPKQCRERWFNHL 48 (131)
T ss_dssp SSCCHHHHHHHHHHHHHHC---------SCCGGGGTTSCT----TSCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHhC---------cCCHHHHHHHHC----CCCHHHHHHHHhhcc
Confidence 4699999999998877642 135999988663 599999999998743
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=91.93 E-value=0.24 Score=36.42 Aligned_cols=51 Identities=18% Similarity=0.424 Sum_probs=38.4
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVNR 74 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~~ 74 (270)
..||.+|.+.|......+. . ....-|+.||..+- | +|+.+|+.+|+.|...
T Consensus 9 ~~WT~eE~k~fe~ALa~~~----~--~tp~rWe~IA~~V~--g--KT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLP----K--HKPGFWSEVAAAVG--S--RSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSC----S--SSSSHHHHHHHHTT--T--SCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCC----C--CCccHHHHHHHHcC--C--CCHHHHHHHHHHHHhc
Confidence 5799999999988766432 1 12357999998754 2 9999999999887543
No 41
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=91.70 E-value=0.11 Score=42.70 Aligned_cols=48 Identities=21% Similarity=0.421 Sum_probs=38.8
Q ss_pred CCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 024274 12 QAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKNLVN 73 (270)
Q Consensus 12 r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~ 73 (270)
....||.+|-..||.+...+. .-|..||..|. .||+.||+++|..|.+
T Consensus 109 ~~~~WT~eEd~~L~~~~~~~g----------~~W~~Ia~~l~----gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 109 KKTSWTEEEDRIIYQAHKRLG----------NRWAEIAKLLP----GRTDNAIKNHWNSTMR 156 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHC----------SCHHHHHTTST----TCCHHHHHHHHHTTTC
T ss_pred cccCCChHHHHHHHHHHHHHC----------CCHHHHHHHCC----CCCHHHHHHHHHHHHh
Confidence 456899999999999987652 35999997542 5999999999998753
No 42
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=90.79 E-value=0.18 Score=45.10 Aligned_cols=51 Identities=10% Similarity=0.281 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchh-HHHHHHHHHHHcCCCCCHHhHHHHHHHHHH
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKT-IWEIVSVKLRERGYSRTPDQCKCKWKNLVN 73 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~-lWe~IS~~L~e~Gy~Rsa~QCr~KwknLk~ 73 (270)
..||.+|-..||.+...+- ..+++. .|..||..|. .||+.||++.|.++.+
T Consensus 9 ~~FT~EED~~Ile~v~k~G-----n~r~ghk~W~~IAk~Lp----GRT~nsIRnRw~~~L~ 60 (246)
T 1ign_A 9 ASFTDEEDEFILDVVRKNP-----TRRTTHTLYDEISHYVP----NHTGNSIRHRFRVYLS 60 (246)
T ss_dssp CCCCHHHHHHHHHHHHTSG-----GGTTCSHHHHHHTTTST----TSCHHHHHHHHHHTTG
T ss_pred CCCCHHHHHHHHHHHHHhC-----cCccccccHHHHHHHcC----CCCHHHHHHHHHHHHh
Confidence 5899999999999988753 234444 4999998654 5999999999998543
No 43
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=86.87 E-value=0.7 Score=41.00 Aligned_cols=45 Identities=13% Similarity=0.105 Sum_probs=35.4
Q ss_pred cCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHH
Q 024274 11 AQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWK 69 (270)
Q Consensus 11 ~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kwk 69 (270)
.....||.+|...|+.....+. .-|..||..|. .+|..||++=|-
T Consensus 131 k~s~~WTeEE~~lFleAl~kYG----------KDW~~IAk~Vg----TKT~~QcKnfY~ 175 (235)
T 2iw5_B 131 KCNARWTTEEQLLAVQAIRKYG----------RDFQAISDVIG----NKSVVQVKNFFV 175 (235)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHS----------SCHHHHHHHHS----SCCHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHcC----CCCHHHHHHHHH
Confidence 4467999999999988766542 34999999763 599999998764
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=84.60 E-value=1.8 Score=33.20 Aligned_cols=56 Identities=11% Similarity=0.243 Sum_probs=43.5
Q ss_pred CCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcC-CCCCHHhHHHHHHHHHHHhhhhc
Q 024274 14 VQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERG-YSRTPDQCKCKWKNLVNRYKGKE 79 (270)
Q Consensus 14 ~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~G-y~Rsa~QCr~KwknLk~~YK~~k 79 (270)
..||.+||..|+.+....+ .-|-.|+..-.-.+ ..||.++.+.++-.+.+..-.++
T Consensus 31 ~~WT~eETd~LfdLc~~fd----------lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~~r 87 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFD----------LRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR 87 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTT----------TCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcC----------CCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999998865 34667777764333 37999999999988887766554
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.82 E-value=12 Score=26.02 Aligned_cols=46 Identities=9% Similarity=0.107 Sum_probs=31.3
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHH
Q 024274 7 SSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCK 65 (270)
Q Consensus 7 s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr 65 (270)
|.+......||.+|...|+.-..... .-|..|+..+ .+ .+|..+|.
T Consensus 3 ~~p~~~~~~WT~eE~~~Fe~~l~~yG----------Kdf~~I~~~~--v~-~Kt~~~~v 48 (63)
T 2yqk_A 3 SGSSGIEKCWTEDEVKRFVKGLRQYG----------KNFFRIRKEL--LP-NKETGELI 48 (63)
T ss_dssp CCCCCCCCSCCHHHHHHHHHHHHHTC----------SCHHHHHHHS--CT-TSCHHHHH
T ss_pred CCCCcCCCCcCHHHHHHHHHHHHHhC----------ccHHHHHHHH--cC-CCcHHHHH
Confidence 34444568999999998887665532 2377787642 11 58999995
No 46
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=69.86 E-value=3.9 Score=39.84 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=34.3
Q ss_pred cCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHH
Q 024274 11 AQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKW 68 (270)
Q Consensus 11 ~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kw 68 (270)
.....||.+|+..|+.....+. .-|..||..+. .+|+.||+.=|
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG----------kdw~~IA~~Vg----TKT~~Qvk~fy 421 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG----------RDFQAISDVIG----NKSVVQVKNFF 421 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT----------TCHHHHHHHHS----SCCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHHC----------cCHHHHHHHhC----CCCHHHHHHHH
Confidence 3568999999999988766532 46999998764 58999999743
No 47
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=58.30 E-value=23 Score=24.32 Aligned_cols=54 Identities=7% Similarity=0.163 Sum_probs=38.6
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKN 70 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kwkn 70 (270)
...+|.+|=..||........ ..+......+|+.++.. .--+.|.+.|++.|.+
T Consensus 2 R~~FT~edD~~L~~~v~~~~~-~~~~~~Gn~iwk~la~~---~~~~HtwqSwRdRy~k 55 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENAR-SPSSVTGNALWKAMEKS---SLTQHSWQSLKDRYLK 55 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCC-STTTTTSSHHHHHHHHS---CSSSCCSHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhcc-ccCCCccHHHHHHHHHh---HCCCCCHHHHHHHHHH
Confidence 367899999999988877542 11223455899988771 2247899999999975
No 48
>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y
Probab=52.84 E-value=9.1 Score=26.53 Aligned_cols=18 Identities=22% Similarity=0.567 Sum_probs=16.3
Q ss_pred HHhHHHHHHHHHHHhhhh
Q 024274 61 PDQCKCKWKNLVNRYKGK 78 (270)
Q Consensus 61 a~QCr~KwknLk~~YK~~ 78 (270)
+..|+.||+||...|+.+
T Consensus 13 srk~rakfkn~lqh~r~v 30 (63)
T 2c9l_Y 13 ARKSRAKFKQLLQHYREV 30 (63)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 568999999999999976
No 49
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=44.91 E-value=24 Score=25.00 Aligned_cols=47 Identities=9% Similarity=-0.010 Sum_probs=33.0
Q ss_pred CCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHH
Q 024274 7 SSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKC 66 (270)
Q Consensus 7 s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~ 66 (270)
|+.++....||.+|...|..-..... .-|..|+..+ .+ .+|..+|..
T Consensus 2 ~~~r~~~~~WT~eE~~~Fe~~l~~yG----------Kdf~~I~~~~--v~-~Kt~~~~v~ 48 (70)
T 2crg_A 2 SSGSSGMEEWSASEACLFEEALEKYG----------KDFNDIRQDF--LP-WKSLTSIIE 48 (70)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHTC----------SCHHHHHHTT--CS-SSCHHHHHH
T ss_pred CCcccCCCCCCHHHHHHHHHHHHHhC----------ccHHHHHHHH--cC-CCCHHHHHH
Confidence 45668889999999988887665432 2377787631 11 589999974
No 50
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=41.48 E-value=1.8 Score=31.82 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHH
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCK 67 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~K 67 (270)
+..||.+|-++|-....-.. . -...-|+.||..+. | +|+.+|+.-
T Consensus 20 s~~WT~eE~K~FE~ALa~yp----~--~tpdRWekIA~~Vp--G--KT~eEVk~h 64 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTN----K--DTPDRWKKVAQYVK--G--RTPEEVKKH 64 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSC----S--SCCSSSTTTGGGSC--S--SCHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHHHCC----C--CCCcHHHHHHHHcC--C--CCHHHHHHH
Confidence 56799999998876654431 1 12356999987654 3 999999753
No 51
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=30.57 E-value=1.4e+02 Score=20.94 Aligned_cols=53 Identities=8% Similarity=0.109 Sum_probs=39.3
Q ss_pred CCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHHHHHHH
Q 024274 9 AHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCKCKWKN 70 (270)
Q Consensus 9 ~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr~Kwkn 70 (270)
.......||.+.-..|+.....+. ....++..|.+.|.-.| .|..++++-+-.
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG-------~~~AtPk~Il~~M~v~g--LT~~~VkSHLQK 55 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLG-------VERAVPKKILDLMNVDK--LTRENVASHLQK 55 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHC-------TTTCCHHHHHHHHCCTT--CCHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhC-------CCCCCcHHHHHHcCCCC--CCHHHHHHHHHH
Confidence 345668999999999999988763 23467788877776544 688888876654
No 52
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=27.57 E-value=1.8e+02 Score=21.12 Aligned_cols=70 Identities=17% Similarity=0.101 Sum_probs=47.7
Q ss_pred CCCCCCCcCCCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHH----HcCCC------CCHHhHHHHHHHHHH
Q 024274 4 SSSSSAHAQAVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLR----ERGYS------RTPDQCKCKWKNLVN 73 (270)
Q Consensus 4 ~~~s~~~~r~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~----e~Gy~------Rsa~QCr~KwknLk~ 73 (270)
++.++.......||...+..|-..+.. ........-+.||..|. ..|.. .+..|++..|.|=..
T Consensus 2 ~~~~~~rr~R~~ft~~ql~~Le~~F~~------~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~ 75 (95)
T 2cuf_A 2 SSGSSGRGSRFTWRKECLAVMESYFNE------NQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRK 75 (95)
T ss_dssp CSSSCCCCCSCCCCHHHHHHHHHHHHH------CSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCCHHHHHHHHHHHhc------CCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHH
Confidence 344556666788999988877776654 11234456667777775 22332 899999999999877
Q ss_pred Hhhhhc
Q 024274 74 RYKGKE 79 (270)
Q Consensus 74 ~YK~~k 79 (270)
.+++..
T Consensus 76 k~kr~~ 81 (95)
T 2cuf_A 76 EIKRRA 81 (95)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777643
No 53
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding protein, CBP40, metal binding protein; 3.00A {Physarum polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Probab=22.31 E-value=1.2e+02 Score=26.96 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 024274 186 KAFFDQQQRMEVEWRQMMERRAQERQLFEEEWRQ 219 (270)
Q Consensus 186 ~~~~~~q~~~~~~~~e~~e~~e~er~~~Ee~Wr~ 219 (270)
+++-..|+.+..++.+.+-.-+++|...|+.=++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (323)
T 1ij5_A 15 KKVHENLEELQKKLDHTSFAHKEDRDRLEAQIAQ 48 (323)
T ss_dssp HHHHHHHHHHHHHHTTCCCC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444455556666665555555566666655543
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=22.12 E-value=67 Score=23.96 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=28.2
Q ss_pred CCCCCHHHHHHHHHHHhhhHHhhhhcccchhHHHHHHHHHHHcCCCCCHHhHH
Q 024274 13 AVQWGNEETRDLIVIRGETERDLVGIKRNKTIWEIVSVKLRERGYSRTPDQCK 65 (270)
Q Consensus 13 ~~~Wt~eET~~LI~Ir~e~~~~f~~~~rn~~lWe~IS~~L~e~Gy~Rsa~QCr 65 (270)
...||.+|...|.......- +-|..|+..| =.||..+|-
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g----------K~F~~Ia~~l----~~Kt~~~cV 81 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP----------KNFGLIASFL----ERKTVAECV 81 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST----------TCHHHHHHTC----TTCCHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC----------CCHHHHHHHc----CCCCHHHHH
Confidence 57899999888877666532 4577786543 269999997
Done!