Query 024275
Match_columns 270
No_of_seqs 163 out of 1652
Neff 9.6
Searched_HMMs 29240
Date Mon Mar 25 05:26:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024275.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024275hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 3.8E-46 1.3E-50 317.4 23.6 223 33-260 4-242 (297)
2 2lck_A Mitochondrial uncouplin 100.0 3.3E-46 1.1E-50 318.5 22.3 219 39-260 4-235 (303)
3 2lck_A Mitochondrial uncouplin 100.0 1.1E-36 3.9E-41 259.5 17.3 182 34-215 102-287 (303)
4 1okc_A ADP, ATP carrier protei 100.0 3.3E-36 1.1E-40 256.0 18.2 179 34-213 110-296 (297)
5 3f2e_A SIRV coat protein; four 49.2 11 0.00037 24.0 2.2 38 159-196 1-42 (100)
6 2acm_A Mucin-1; auto-catalytic 27.5 17 0.00057 21.9 0.5 20 76-95 40-59 (66)
7 3fbl_A Putative uncharacterize 25.8 54 0.0018 19.8 2.5 17 169-185 4-20 (82)
8 3tgu_G UQCRQ, mitochondrial ub 18.6 1.8E+02 0.0062 18.6 4.1 37 181-217 33-69 (81)
9 1y9i_A Low temperature require 18.1 1.6E+02 0.0056 22.0 4.3 45 198-242 111-157 (178)
10 2a3d_A Protein (de novo three- 14.8 1.6E+02 0.0055 17.3 2.9 14 151-164 10-23 (73)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.8e-46 Score=317.38 Aligned_cols=223 Identities=22% Similarity=0.383 Sum_probs=196.7
Q ss_pred ChhHHHHHHHHHHHHHHHhhhhchHHHHHHHHHhcCCCC----CCCCCcHHHHHHHHHhhhCccccccchhhhhhchhhh
Q 024275 33 GLEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGASR----PLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPA 108 (270)
Q Consensus 33 ~~~~~~~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~~----~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 108 (270)
..+.+..+++|++|++++.++++|+|++|+|+|++.... ...+++.++++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 456788999999999999999999999999999986421 2357899999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhh-cCCCC-C----chHHHHHHHHHHHHhhhhhcccHHHHHHHHhcCC------CCCCCHHHHHHHH
Q 024275 109 HAVYFSVYELCKEFF-SGGVP-N----NSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS------SPYKGVADCVKRV 176 (270)
Q Consensus 109 ~~~~~~~~~~~~~~~-~~~~~-~----~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~------~~~~~~~~~~~~i 176 (270)
.+++|.+||.+++.+ ..... . +....+++|++||++++++++|+|++|+|+|++. .+|.+.++++++|
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 999999999999954 33221 1 2356789999999999999999999999999874 3689999999999
Q ss_pred HHhhChhhhcchhHHHHHHHhhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhhcCcHHHHHHHHh
Q 024275 177 LVEEGIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHATAGAAAGALAATLTTPLDVVKTQLQ 256 (270)
Q Consensus 177 ~~~~G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~a~~~t~Pld~vr~r~q 256 (270)
+++||++|||||+.+++++.+++.+++|.+||.+++.+.+.. +.+....+++|++||++++++++|+|+||+|||
T Consensus 164 ~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~-----~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q 238 (297)
T 1okc_A 164 FKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK-----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMM 238 (297)
T ss_dssp HHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG-----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC-----CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHh
Confidence 999999999999999999999999999999999999764321 245677889999999999999999999999999
Q ss_pred cccc
Q 024275 257 CQVR 260 (270)
Q Consensus 257 ~~~~ 260 (270)
++..
T Consensus 239 ~~~~ 242 (297)
T 1okc_A 239 MQSG 242 (297)
T ss_dssp TTTT
T ss_pred hcCC
Confidence 9864
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=3.3e-46 Score=318.50 Aligned_cols=219 Identities=25% Similarity=0.406 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHhcCCCC-------CCCCCcHHHHHHHHHhhhCccccccchhhhhhchhhhhhH
Q 024275 39 FMISGSIAGSVEHMAMYPVDTLKTRMQVIGASR-------PLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAV 111 (270)
Q Consensus 39 ~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~~-------~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 111 (270)
.+++|++|++++.++++|+|++|+|+|++.... ..++++.++++++|+++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 689999999999999999999999999986532 3467899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCC-CCCchHHHHHHHHHHHHhhhhhcccHHHHHHHHhcCCC-----CCCCHHHHHHHHHHhhChhhh
Q 024275 112 YFSVYELCKEFFSGG-VPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSS-----PYKGVADCVKRVLVEEGIGAF 185 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~-----~~~~~~~~~~~i~~~~G~~gl 185 (270)
+|.+||.+|+.+.+. ...+....+++|++||+++.++++|+|++|+|+|++.. .|.+.++++++|+++||++||
T Consensus 84 ~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~gl 163 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGL 163 (303)
T ss_dssp TTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhh
Confidence 999999999998765 34566788999999999999999999999999998753 689999999999999999999
Q ss_pred cchhHHHHHHHhhHHHHHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHHHHHHhhcCcHHHHHHHHhcccc
Q 024275 186 YASYRTTVIMNAPFQAVHFATYEAVKRALMEFDPNSGSDESLVVHATAGAAAGALAATLTTPLDVVKTQLQCQVR 260 (270)
Q Consensus 186 y~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~a~~~t~Pld~vr~r~q~~~~ 260 (270)
|||+.+++++.+++.+++|.+||.+++.+.+.. ....+....+++|++||++++++++|+|+||+|||.+..
T Consensus 164 yrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~---~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 164 WKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN---LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT---SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred hCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence 999999999999999999999999999876543 223556778999999999999999999999999999864
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.1e-36 Score=259.54 Aligned_cols=182 Identities=23% Similarity=0.380 Sum_probs=166.6
Q ss_pred hhHHHHHHHHHHHHHHHhhhhchHHHHHHHHHhcCCC-CCCCCCcHHHHHHHHHhhhCccccccchhhhhhchhhhhhHH
Q 024275 34 LEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGAS-RPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAVY 112 (270)
Q Consensus 34 ~~~~~~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~-~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~~ 112 (270)
.+.+..+++|++|++++.++++|+|++|+|+|++... ....+.+.++++++|+++||++|||||+.+++++.++..+++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~ 181 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAE 181 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999998642 233578999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCC--CCchHHHHHHHHHHHHhhhhhcccHHHHHHHHhcCC-CCCCCHHHHHHHHHHhhChhhhcchh
Q 024275 113 FSVYELCKEFFSGGV--PNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKS-SPYKGVADCVKRVLVEEGIGAFYASY 189 (270)
Q Consensus 113 ~~~~~~~~~~~~~~~--~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~-~~~~~~~~~~~~i~~~~G~~gly~G~ 189 (270)
|.+||.+|+.+.+.. ..+....+++|++||++++++++|+|+||+|+|.+. ..|.++++++++|+++||++|||||+
T Consensus 182 f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~ 261 (303)
T 2lck_A 182 LVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGF 261 (303)
T ss_dssp HHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCC
T ss_pred HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccH
Confidence 999999999887643 455678899999999999999999999999999975 46999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHh
Q 024275 190 RTTVIMNAPFQAVHFATYEAVKRALM 215 (270)
Q Consensus 190 ~~~~~~~~~~~~~~~~~y~~~~~~~~ 215 (270)
.|+++|.+|..+++|.+||.+++.+.
T Consensus 262 ~~~~~r~~p~~~i~f~~ye~~k~~l~ 287 (303)
T 2lck_A 262 MPSFLRLGSWNVVMFVTYEQLKRALM 287 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998654
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.3e-36 Score=256.03 Aligned_cols=179 Identities=23% Similarity=0.373 Sum_probs=159.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhhchHHHHHHHHHhcCCC--CCCCCCcHHHHHHHHHhhhCccccccchhhhhhchhhhhhH
Q 024275 34 LEFWQFMISGSIAGSVEHMAMYPVDTLKTRMQVIGAS--RPLHPAGVRQAFSSVLKLEGPAGFYRGIAAMGLGAGPAHAV 111 (270)
Q Consensus 34 ~~~~~~~~~g~~a~~~~~~i~~Pld~vk~~~q~~~~~--~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~~ 111 (270)
...+..+++|++|++++.++++|+|++|+|+|++... ....+.+.++++++|+++||++|||||+.+++++.++..++
T Consensus 110 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 189 (297)
T 1okc_A 110 RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAA 189 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHH
Confidence 3457789999999999999999999999999998532 23457899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhhhhhcccHHHHHHHHhcCCC------CCCCHHHHHHHHHHhhChhhh
Q 024275 112 YFSVYELCKEFFSGGVPNNSMAHAVSGVFSTVASDAVITPMDMVKQRLQLKSS------PYKGVADCVKRVLVEEGIGAF 185 (270)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~Pld~ik~r~q~~~~------~~~~~~~~~~~i~~~~G~~gl 185 (270)
+|.+||.+|+.+.+....+....+++|+++|++++++++|+|+||+|+|++.. .|+++++|+++|+++||++||
T Consensus 190 ~f~~ye~~k~~~~~~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gl 269 (297)
T 1okc_A 190 YFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAF 269 (297)
T ss_dssp HHHHHHHHHHSSCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGG
T ss_pred HHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeE
Confidence 99999999998765555667788999999999999999999999999998742 689999999999999999999
Q ss_pred cchhHHHHHHHhhHHHHHHHHHHHHHHH
Q 024275 186 YASYRTTVIMNAPFQAVHFATYEAVKRA 213 (270)
Q Consensus 186 y~G~~~~~~~~~~~~~~~~~~y~~~~~~ 213 (270)
|||+.|+++|. +..+++|.+||.++++
T Consensus 270 yrG~~~~~~r~-~~~~~~f~~ye~~k~~ 296 (297)
T 1okc_A 270 FKGAWSNVLRG-MGGAFVLVLYDEIKKF 296 (297)
T ss_dssp GTTHHHHHHHH-HHHHHHHHHHHTC---
T ss_pred ecchHHHHHhh-ccceeeehHHHHHHhh
Confidence 99999999996 5688999999998875
No 5
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=49.16 E-value=11 Score=23.98 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=23.4
Q ss_pred HhcCCCCCCCHHHHHHHHHHhhCh----hhhcchhHHHHHHH
Q 024275 159 LQLKSSPYKGVADCVKRVLVEEGI----GAFYASYRTTVIMN 196 (270)
Q Consensus 159 ~q~~~~~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~~~ 196 (270)
||.+.+++.+.-+-+..+..+-|+ +.+|+|++....|.
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 466667787877778888888786 45788888776654
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=27.49 E-value=17 Score=21.87 Aligned_cols=20 Identities=20% Similarity=0.346 Sum_probs=17.5
Q ss_pred CcHHHHHHHHHhhhCccccc
Q 024275 76 AGVRQAFSSVLKLEGPAGFY 95 (270)
Q Consensus 76 ~~~~~~~~~i~~~~G~~~ly 95 (270)
+++.+.+.+|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 67888999999999999886
No 7
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=25.80 E-value=54 Score=19.79 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=12.3
Q ss_pred HHHHHHHHHHhhChhhh
Q 024275 169 VADCVKRVLVEEGIGAF 185 (270)
Q Consensus 169 ~~~~~~~i~~~~G~~gl 185 (270)
+.-.+++|.+.+|+..+
T Consensus 4 lrlaikeicktdgipni 20 (82)
T 3fbl_A 4 LRLAIKEICKTDGIPNI 20 (82)
T ss_dssp HHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHccCCCCcc
Confidence 34567889999997543
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=18.65 E-value=1.8e+02 Score=18.62 Aligned_cols=37 Identities=11% Similarity=0.164 Sum_probs=28.0
Q ss_pred ChhhhcchhHHHHHHHhhHHHHHHHHHHHHHHHHhhc
Q 024275 181 GIGAFYASYRTTVIMNAPFQAVHFATYEAVKRALMEF 217 (270)
Q Consensus 181 G~~gly~G~~~~~~~~~~~~~~~~~~y~~~~~~~~~~ 217 (270)
|+...+|-+.-.++..+|-.++...+|++.++.....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l 69 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERL 69 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666777888888999999999999876544
No 9
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=18.11 E-value=1.6e+02 Score=22.01 Aligned_cols=45 Identities=11% Similarity=0.099 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHHHhhcCC-C-CCCChhHHHHHHHHHHHHHHHH
Q 024275 198 PFQAVHFATYEAVKRALMEFDP-N-SGSDESLVVHATAGAAAGALAA 242 (270)
Q Consensus 198 ~~~~~~~~~y~~~~~~~~~~~~-~-~~~~~~~~~~~~~g~~a~~~a~ 242 (270)
.-..+.|..||..|.+..+.-+ . ...-..+...+++|..|+++..
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 3456778888888876443221 1 1223467888888888877654
No 10
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=14.82 E-value=1.6e+02 Score=17.30 Aligned_cols=14 Identities=29% Similarity=0.385 Sum_probs=10.1
Q ss_pred cHHHHHHHHhcCCC
Q 024275 151 PMDMVKQRLQLKSS 164 (270)
Q Consensus 151 Pld~ik~r~q~~~~ 164 (270)
-+..||+|+|.-+.
T Consensus 10 rlaaiktrlqalgg 23 (73)
T 2a3d_A 10 RLAAIKTRLQALGG 23 (73)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcC
Confidence 35578999987654
Done!