Query 024276
Match_columns 270
No_of_seqs 277 out of 2614
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 03:23:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 1.8E-33 3.9E-38 232.6 19.8 163 4-203 105-274 (346)
2 KOG0105 Alternative splicing f 100.0 6.7E-32 1.5E-36 194.2 21.3 194 1-206 1-194 (241)
3 TIGR01645 half-pint poly-U bin 100.0 2.4E-31 5.3E-36 231.0 20.5 174 4-205 105-285 (612)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.1E-30 6.8E-35 218.0 20.3 162 4-202 1-169 (352)
5 TIGR01622 SF-CC1 splicing fact 100.0 5.3E-30 1.1E-34 223.6 20.5 172 4-203 87-265 (457)
6 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4E-29 8.6E-34 217.9 21.2 170 5-202 1-172 (481)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.2E-28 2.6E-33 214.9 24.0 192 4-202 273-478 (481)
8 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.9E-28 4.1E-33 207.1 23.9 196 5-204 88-349 (352)
9 KOG0148 Apoptosis-promoting RN 100.0 5.1E-29 1.1E-33 189.6 14.3 170 8-202 64-236 (321)
10 TIGR01628 PABP-1234 polyadenyl 100.0 2.3E-28 5E-33 218.1 19.3 158 8-202 2-165 (562)
11 TIGR01648 hnRNP-R-Q heterogene 100.0 8E-28 1.7E-32 208.8 19.9 191 5-203 57-306 (578)
12 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2E-27 4.3E-32 210.2 21.8 185 4-202 173-373 (509)
13 KOG0109 RNA-binding protein LA 100.0 2.5E-28 5.5E-33 187.6 11.2 146 7-202 3-148 (346)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 6.6E-27 1.4E-31 206.9 21.2 187 5-202 294-500 (509)
15 TIGR01628 PABP-1234 polyadenyl 100.0 2.3E-27 5E-32 211.7 17.8 178 5-203 177-363 (562)
16 KOG0131 Splicing factor 3b, su 100.0 1.9E-27 4.1E-32 171.0 12.4 165 4-206 7-179 (203)
17 KOG0144 RNA-binding protein CU 100.0 1.4E-27 3.1E-32 192.6 12.9 169 4-207 32-209 (510)
18 KOG0117 Heterogeneous nuclear 99.9 1.2E-26 2.5E-31 188.1 16.3 190 5-202 82-329 (506)
19 TIGR01622 SF-CC1 splicing fact 99.9 6.7E-26 1.5E-30 197.9 22.2 193 6-202 186-446 (457)
20 KOG0145 RNA-binding protein EL 99.9 2.3E-26 4.9E-31 174.4 14.3 163 5-204 40-209 (360)
21 KOG0127 Nucleolar protein fibr 99.9 9.4E-26 2E-30 187.1 15.4 184 6-202 5-194 (678)
22 KOG0127 Nucleolar protein fibr 99.9 4.4E-24 9.5E-29 177.2 19.2 177 6-182 117-354 (678)
23 KOG0145 RNA-binding protein EL 99.9 8.8E-24 1.9E-28 160.4 16.2 193 6-202 127-356 (360)
24 KOG0124 Polypyrimidine tract-b 99.9 6.3E-25 1.4E-29 174.1 8.6 169 7-203 114-289 (544)
25 KOG0106 Alternative splicing f 99.9 4.2E-24 9.2E-29 161.6 11.1 163 7-198 2-165 (216)
26 KOG0107 Alternative splicing f 99.9 5.6E-23 1.2E-27 147.1 13.8 78 124-206 10-87 (195)
27 KOG0123 Polyadenylate-binding 99.9 1.1E-22 2.3E-27 169.5 16.5 152 7-206 2-155 (369)
28 KOG4206 Spliceosomal protein s 99.9 9.9E-22 2.2E-26 147.2 18.6 195 3-201 6-219 (221)
29 KOG0110 RNA-binding protein (R 99.9 1.7E-22 3.7E-27 172.7 13.7 166 8-203 517-692 (725)
30 KOG0123 Polyadenylate-binding 99.9 4.7E-21 1E-25 159.7 15.0 168 4-203 74-245 (369)
31 KOG0147 Transcriptional coacti 99.9 2.9E-21 6.2E-26 161.1 13.3 189 7-200 279-524 (549)
32 TIGR01645 half-pint poly-U bin 99.9 7.9E-20 1.7E-24 159.5 22.6 79 5-83 203-284 (612)
33 KOG0146 RNA-binding protein ET 99.9 3.7E-20 8E-25 141.3 15.3 193 5-201 18-362 (371)
34 KOG0144 RNA-binding protein CU 99.9 1.1E-20 2.3E-25 153.1 12.9 81 5-85 123-208 (510)
35 PLN03134 glycine-rich RNA-bind 99.9 3.9E-20 8.5E-25 134.8 14.6 81 4-84 32-115 (144)
36 KOG0147 Transcriptional coacti 99.9 5.3E-22 1.1E-26 165.4 5.3 172 4-201 177-355 (549)
37 KOG0107 Alternative splicing f 99.8 1.4E-19 3.1E-24 129.8 16.5 78 4-83 8-85 (195)
38 KOG1190 Polypyrimidine tract-b 99.8 1.6E-19 3.6E-24 145.4 17.7 192 6-202 297-489 (492)
39 KOG4207 Predicted splicing fac 99.8 6.9E-20 1.5E-24 134.7 13.7 79 5-83 12-93 (256)
40 KOG4205 RNA-binding protein mu 99.8 1.4E-20 3.1E-25 151.5 11.2 167 1-202 1-174 (311)
41 KOG0148 Apoptosis-promoting RN 99.8 2E-20 4.3E-25 143.0 10.8 139 1-205 1-143 (321)
42 KOG1457 RNA binding protein (c 99.8 4.7E-19 1E-23 131.9 14.7 184 5-188 33-274 (284)
43 KOG4207 Predicted splicing fac 99.8 3.3E-19 7.1E-24 131.2 12.3 79 120-202 9-91 (256)
44 KOG4676 Splicing factor, argin 99.8 2.1E-20 4.5E-25 149.6 3.2 182 5-188 6-214 (479)
45 KOG4212 RNA-binding protein hn 99.8 1.2E-17 2.6E-22 135.9 17.9 184 5-188 43-282 (608)
46 KOG0121 Nuclear cap-binding pr 99.8 2.8E-19 6.1E-24 121.5 7.0 80 4-83 34-116 (153)
47 KOG0113 U1 small nuclear ribon 99.8 1.5E-17 3.3E-22 129.0 15.5 87 3-89 98-187 (335)
48 KOG1548 Transcription elongati 99.8 4.6E-17 9.9E-22 128.8 14.6 195 5-203 133-351 (382)
49 PF00076 RRM_1: RNA recognitio 99.7 5.7E-18 1.2E-22 108.9 7.5 68 9-76 1-70 (70)
50 KOG4211 Splicing factor hnRNP- 99.7 8.4E-17 1.8E-21 133.0 15.9 167 4-201 8-179 (510)
51 PLN03120 nucleic acid binding 99.7 1.4E-17 3E-22 129.7 10.6 77 6-83 4-80 (260)
52 KOG0110 RNA-binding protein (R 99.7 3.9E-17 8.5E-22 140.3 14.0 191 5-202 384-596 (725)
53 TIGR01648 hnRNP-R-Q heterogene 99.7 3.2E-17 6.8E-22 143.1 12.8 136 5-152 232-369 (578)
54 TIGR01659 sex-lethal sex-letha 99.7 1.7E-16 3.6E-21 131.9 14.5 80 5-84 192-276 (346)
55 PLN03121 nucleic acid binding 99.7 9.6E-17 2.1E-21 122.9 11.5 80 4-84 3-82 (243)
56 KOG0114 Predicted RNA-binding 99.7 7.7E-17 1.7E-21 105.5 8.9 80 4-83 16-95 (124)
57 KOG0122 Translation initiation 99.7 1.4E-16 3.1E-21 120.4 9.2 80 4-83 187-269 (270)
58 KOG0124 Polypyrimidine tract-b 99.7 3.1E-15 6.7E-20 119.4 17.0 78 7-84 211-291 (544)
59 PF14259 RRM_6: RNA recognitio 99.7 2.7E-16 5.8E-21 101.0 7.9 68 9-76 1-70 (70)
60 KOG0126 Predicted RNA-binding 99.7 9.8E-18 2.1E-22 121.0 0.3 83 4-86 33-118 (219)
61 PLN03134 glycine-rich RNA-bind 99.7 6.6E-15 1.4E-19 107.4 14.5 82 120-205 30-115 (144)
62 KOG0120 Splicing factor U2AF, 99.6 1E-15 2.2E-20 129.6 9.4 182 5-202 288-490 (500)
63 COG0724 RNA-binding proteins ( 99.6 8.5E-15 1.8E-19 119.9 14.6 145 6-162 115-263 (306)
64 KOG1456 Heterogeneous nuclear 99.6 5.4E-14 1.2E-18 112.7 18.1 189 4-195 285-480 (494)
65 PLN03213 repressor of silencin 99.6 1.8E-15 3.9E-20 125.2 9.5 78 4-82 8-87 (759)
66 smart00362 RRM_2 RNA recogniti 99.6 4.6E-15 1E-19 95.4 9.1 71 8-78 1-72 (72)
67 KOG0149 Predicted RNA-binding 99.6 1.7E-15 3.7E-20 114.2 7.0 75 7-82 13-90 (247)
68 KOG0125 Ataxin 2-binding prote 99.6 2.4E-15 5.1E-20 118.4 7.8 80 4-83 94-174 (376)
69 KOG1190 Polypyrimidine tract-b 99.6 7.9E-14 1.7E-18 112.9 16.2 189 8-203 152-372 (492)
70 KOG0130 RNA-binding protein RB 99.6 2.2E-15 4.8E-20 103.6 6.2 79 5-83 71-152 (170)
71 KOG0113 U1 small nuclear ribon 99.6 5.2E-14 1.1E-18 109.6 13.5 77 122-202 99-179 (335)
72 KOG1456 Heterogeneous nuclear 99.6 5.1E-13 1.1E-17 107.1 19.4 192 4-202 118-361 (494)
73 KOG0415 Predicted peptidyl pro 99.6 4.4E-15 9.5E-20 118.0 5.4 81 4-84 237-320 (479)
74 KOG4212 RNA-binding protein hn 99.5 5.9E-13 1.3E-17 108.9 17.3 74 122-200 534-607 (608)
75 PF13893 RRM_5: RNA recognitio 99.5 4.6E-14 1E-18 86.1 8.1 56 23-80 1-56 (56)
76 cd00590 RRM RRM (RNA recogniti 99.5 1E-13 2.2E-18 89.5 9.4 72 8-79 1-74 (74)
77 PF00076 RRM_1: RNA recognitio 99.5 5.6E-14 1.2E-18 90.1 8.1 66 127-196 1-69 (70)
78 smart00360 RRM RNA recognition 99.5 5.8E-14 1.3E-18 89.8 8.0 68 11-78 1-71 (71)
79 KOG0111 Cyclophilin-type pepti 99.5 1.7E-14 3.7E-19 107.5 5.2 81 5-85 9-92 (298)
80 KOG0125 Ataxin 2-binding prote 99.5 7.8E-14 1.7E-18 110.0 8.2 77 122-202 94-172 (376)
81 KOG0130 RNA-binding protein RB 99.5 1.4E-13 3E-18 94.8 8.1 78 121-202 69-150 (170)
82 KOG0105 Alternative splicing f 99.5 2.6E-13 5.7E-18 98.6 9.9 79 123-205 5-84 (241)
83 KOG0108 mRNA cleavage and poly 99.5 1.5E-13 3.2E-18 116.0 8.9 79 7-85 19-100 (435)
84 KOG0117 Heterogeneous nuclear 99.5 1.6E-13 3.5E-18 112.4 7.6 78 6-88 259-336 (506)
85 PLN03120 nucleic acid binding 99.5 4.5E-13 9.7E-18 104.6 9.7 74 124-202 4-78 (260)
86 KOG0109 RNA-binding protein LA 99.5 1.1E-13 2.5E-18 107.3 6.2 93 4-101 76-168 (346)
87 KOG1365 RNA-binding protein Fu 99.4 1.1E-13 2.5E-18 111.2 5.6 188 5-201 160-359 (508)
88 KOG0114 Predicted RNA-binding 99.4 1.5E-12 3.3E-17 85.6 9.0 80 119-202 13-93 (124)
89 PF14259 RRM_6: RNA recognitio 99.4 1.5E-12 3.2E-17 83.4 7.6 66 127-196 1-69 (70)
90 KOG0120 Splicing factor U2AF, 99.4 2.2E-12 4.7E-17 109.6 10.1 179 4-202 173-367 (500)
91 PLN03213 repressor of silencin 99.4 2.9E-12 6.2E-17 106.5 9.8 76 123-202 9-86 (759)
92 KOG4454 RNA binding protein (R 99.4 5.3E-13 1.2E-17 99.6 5.0 140 4-188 7-151 (267)
93 KOG0121 Nuclear cap-binding pr 99.4 1.8E-12 3.9E-17 88.6 7.1 78 122-203 34-115 (153)
94 smart00361 RRM_1 RNA recogniti 99.4 2.6E-12 5.7E-17 82.0 7.5 58 20-77 2-69 (70)
95 KOG0122 Translation initiation 99.4 1.3E-11 2.9E-16 93.8 12.3 80 120-203 185-268 (270)
96 KOG0146 RNA-binding protein ET 99.4 7.8E-13 1.7E-17 101.6 5.8 81 3-83 282-365 (371)
97 PLN03121 nucleic acid binding 99.4 5.3E-12 1.2E-16 97.1 9.7 75 123-202 4-79 (243)
98 KOG0129 Predicted RNA-binding 99.3 3.4E-11 7.5E-16 100.8 14.5 165 4-188 257-443 (520)
99 KOG0132 RNA polymerase II C-te 99.3 2.8E-12 6.1E-17 111.7 8.2 76 5-83 420-495 (894)
100 smart00362 RRM_2 RNA recogniti 99.3 1.8E-11 4E-16 78.3 8.6 69 126-198 1-71 (72)
101 KOG0112 Large RNA-binding prot 99.3 2.6E-12 5.7E-17 113.6 5.1 158 4-202 370-529 (975)
102 KOG0533 RRM motif-containing p 99.3 2.5E-10 5.5E-15 89.0 13.6 79 6-84 83-163 (243)
103 KOG0116 RasGAP SH3 binding pro 99.3 6.2E-11 1.3E-15 99.7 10.9 80 5-85 287-369 (419)
104 smart00360 RRM RNA recognition 99.2 1.1E-10 2.4E-15 74.3 7.9 66 129-198 1-70 (71)
105 KOG4208 Nucleolar RNA-binding 99.2 7.1E-11 1.5E-15 87.8 7.6 79 5-83 48-130 (214)
106 cd00590 RRM RRM (RNA recogniti 99.2 2.2E-10 4.8E-15 73.6 9.1 70 126-199 1-73 (74)
107 PF13893 RRM_5: RNA recognitio 99.2 1.2E-10 2.5E-15 71.0 6.4 56 141-201 1-56 (56)
108 KOG0415 Predicted peptidyl pro 99.2 7E-11 1.5E-15 94.4 6.7 81 118-202 233-317 (479)
109 KOG0131 Splicing factor 3b, su 99.2 5.5E-11 1.2E-15 86.5 5.5 77 122-202 7-87 (203)
110 KOG0126 Predicted RNA-binding 99.2 4E-12 8.6E-17 92.3 -0.6 74 125-202 36-113 (219)
111 KOG4211 Splicing factor hnRNP- 99.2 6.2E-10 1.4E-14 92.9 12.1 175 5-181 102-340 (510)
112 KOG0153 Predicted RNA-binding 99.1 2.6E-10 5.5E-15 91.1 7.5 76 4-82 226-302 (377)
113 KOG0108 mRNA cleavage and poly 99.1 2.5E-10 5.5E-15 96.6 7.4 82 125-210 19-104 (435)
114 KOG4661 Hsp27-ERE-TATA-binding 99.1 4.8E-10 1E-14 95.0 8.7 81 5-85 404-487 (940)
115 KOG4660 Protein Mei2, essentia 99.1 1.6E-10 3.5E-15 97.7 5.7 166 4-188 73-238 (549)
116 KOG0111 Cyclophilin-type pepti 99.0 2.4E-10 5.1E-15 85.7 4.7 79 123-205 9-91 (298)
117 KOG2193 IGF-II mRNA-binding pr 99.0 5.8E-11 1.3E-15 97.0 1.4 140 7-188 2-145 (584)
118 KOG4205 RNA-binding protein mu 99.0 5.1E-10 1.1E-14 90.8 6.0 82 6-88 97-181 (311)
119 KOG0128 RNA-binding protein SA 99.0 2E-11 4.4E-16 107.6 -2.4 133 4-188 665-803 (881)
120 KOG0149 Predicted RNA-binding 99.0 1.2E-09 2.7E-14 82.8 7.0 58 125-182 13-74 (247)
121 COG0724 RNA-binding proteins ( 99.0 2.6E-09 5.6E-14 87.3 9.3 75 124-202 115-193 (306)
122 PF11608 Limkain-b1: Limkain b 98.9 7.1E-09 1.5E-13 65.9 7.7 70 7-83 3-77 (90)
123 PF04059 RRM_2: RNA recognitio 98.9 9.4E-09 2E-13 68.8 8.6 77 7-83 2-87 (97)
124 KOG4307 RNA binding protein RB 98.9 9.6E-09 2.1E-13 89.2 10.1 190 5-200 310-510 (944)
125 smart00361 RRM_1 RNA recogniti 98.9 9.6E-09 2.1E-13 65.5 7.1 57 138-198 2-69 (70)
126 KOG0106 Alternative splicing f 98.8 1.9E-08 4.1E-13 76.9 8.1 70 125-202 2-71 (216)
127 KOG4209 Splicing factor RNPS1, 98.8 5.8E-09 1.3E-13 81.7 5.4 79 4-83 99-180 (231)
128 KOG4210 Nuclear localization s 98.8 1.1E-08 2.4E-13 82.8 7.1 173 5-208 87-268 (285)
129 KOG1365 RNA-binding protein Fu 98.8 1E-07 2.2E-12 77.5 11.9 158 4-181 58-225 (508)
130 KOG4661 Hsp27-ERE-TATA-binding 98.8 6.7E-08 1.5E-12 82.3 10.4 79 121-203 402-484 (940)
131 KOG4206 Spliceosomal protein s 98.8 4.5E-08 9.7E-13 74.2 8.2 75 125-203 10-89 (221)
132 KOG0151 Predicted splicing reg 98.7 9.9E-08 2.2E-12 83.2 11.0 79 5-83 173-257 (877)
133 KOG0132 RNA polymerase II C-te 98.6 1.2E-07 2.5E-12 83.6 7.5 76 124-205 421-496 (894)
134 KOG0226 RNA-binding proteins [ 98.6 9.9E-08 2.2E-12 73.4 5.5 158 10-200 100-266 (290)
135 PF08777 RRM_3: RNA binding mo 98.6 1.7E-07 3.8E-12 64.3 6.2 71 7-80 2-77 (105)
136 KOG0533 RRM motif-containing p 98.5 5.3E-07 1.2E-11 70.6 7.8 75 124-202 83-160 (243)
137 KOG4454 RNA binding protein (R 98.5 8.1E-08 1.8E-12 72.3 2.9 75 121-199 6-82 (267)
138 KOG4676 Splicing factor, argin 98.5 7.1E-09 1.5E-13 84.2 -3.8 64 6-71 151-214 (479)
139 KOG0226 RNA-binding proteins [ 98.5 2.4E-07 5.3E-12 71.3 4.6 77 5-81 189-268 (290)
140 KOG0153 Predicted RNA-binding 98.4 7.5E-07 1.6E-11 71.7 7.4 77 122-203 226-302 (377)
141 KOG1457 RNA binding protein (c 98.4 1.7E-06 3.6E-11 65.5 8.6 86 123-209 33-123 (284)
142 KOG1995 Conserved Zn-finger pr 98.4 3.3E-07 7.2E-12 74.1 4.5 81 4-84 64-155 (351)
143 KOG4660 Protein Mei2, essentia 98.4 4.1E-07 8.9E-12 77.5 5.1 71 122-197 73-143 (549)
144 KOG0116 RasGAP SH3 binding pro 98.4 9.6E-06 2.1E-10 68.8 13.1 77 122-203 286-366 (419)
145 KOG4208 Nucleolar RNA-binding 98.4 1.9E-06 4.1E-11 64.5 7.2 66 123-188 48-118 (214)
146 KOG1548 Transcription elongati 98.4 2E-06 4.3E-11 69.2 7.7 76 123-202 133-219 (382)
147 KOG2202 U2 snRNP splicing fact 98.3 3.8E-07 8.2E-12 70.5 3.5 63 21-83 83-148 (260)
148 PF04059 RRM_2: RNA recognitio 98.3 6.3E-06 1.4E-10 55.3 8.7 77 125-201 2-84 (97)
149 PF11608 Limkain-b1: Limkain b 98.3 5.6E-06 1.2E-10 52.9 7.7 69 125-203 3-76 (90)
150 PF14605 Nup35_RRM_2: Nup53/35 98.3 2.9E-06 6.3E-11 50.4 5.3 53 6-62 1-53 (53)
151 KOG0151 Predicted splicing reg 98.3 2.9E-06 6.3E-11 74.3 7.2 82 116-201 166-254 (877)
152 KOG4210 Nuclear localization s 98.2 1.9E-06 4.1E-11 70.0 4.9 79 4-83 182-264 (285)
153 PF08777 RRM_3: RNA binding mo 98.1 6.5E-06 1.4E-10 56.5 5.7 59 125-185 2-60 (105)
154 KOG4209 Splicing factor RNPS1, 98.1 2.4E-05 5.1E-10 61.5 9.1 76 122-202 99-178 (231)
155 COG5175 MOT2 Transcriptional r 98.1 9.6E-06 2.1E-10 65.2 6.8 75 7-81 115-201 (480)
156 KOG2314 Translation initiation 98.1 1.4E-05 3.1E-10 68.4 7.4 75 6-80 58-141 (698)
157 KOG4307 RNA binding protein RB 98.0 2.7E-05 5.9E-10 68.4 8.5 76 4-79 864-943 (944)
158 KOG1855 Predicted RNA-binding 98.0 1.8E-05 4E-10 65.6 6.9 66 5-70 230-311 (484)
159 KOG3152 TBP-binding protein, a 98.0 3.1E-06 6.6E-11 65.5 2.2 70 5-74 73-157 (278)
160 PF05172 Nup35_RRM: Nup53/35/4 98.0 5.8E-05 1.3E-09 51.0 7.8 76 4-81 4-90 (100)
161 KOG2416 Acinus (induces apopto 98.0 5E-06 1.1E-10 71.5 3.2 77 4-83 442-522 (718)
162 KOG0129 Predicted RNA-binding 97.9 3.9E-05 8.4E-10 65.3 7.7 61 4-64 368-432 (520)
163 KOG0128 RNA-binding protein SA 97.9 3.4E-05 7.3E-10 69.3 6.2 77 6-82 736-814 (881)
164 PF08952 DUF1866: Domain of un 97.8 0.00011 2.4E-09 52.7 7.1 57 21-83 51-107 (146)
165 KOG0115 RNA-binding protein p5 97.7 0.00015 3.1E-09 56.4 7.3 101 57-199 6-109 (275)
166 KOG4849 mRNA cleavage factor I 97.7 5.4E-05 1.2E-09 61.2 4.0 74 7-80 81-159 (498)
167 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00018 4E-09 42.7 5.2 52 125-179 2-53 (53)
168 KOG1995 Conserved Zn-finger pr 97.6 0.00032 6.9E-09 57.2 7.9 78 121-202 63-152 (351)
169 KOG2202 U2 snRNP splicing fact 97.5 0.00014 2.9E-09 56.7 4.6 59 139-201 83-145 (260)
170 KOG2314 Translation initiation 97.5 0.00022 4.8E-09 61.4 5.4 66 123-188 57-131 (698)
171 KOG1996 mRNA splicing factor [ 97.5 0.00042 9.1E-09 54.9 6.4 62 20-81 300-365 (378)
172 KOG0112 Large RNA-binding prot 97.4 0.00021 4.5E-09 64.8 5.3 78 4-84 453-532 (975)
173 KOG3152 TBP-binding protein, a 97.4 0.0001 2.2E-09 57.3 2.6 65 124-188 74-154 (278)
174 KOG1855 Predicted RNA-binding 97.4 0.00096 2.1E-08 55.7 7.7 65 122-186 229-310 (484)
175 COG5175 MOT2 Transcriptional r 97.3 0.00091 2E-08 54.1 6.6 75 122-200 112-199 (480)
176 KOG1996 mRNA splicing factor [ 97.3 0.00094 2E-08 53.0 6.5 61 138-202 300-365 (378)
177 KOG0115 RNA-binding protein p5 97.2 0.0019 4.2E-08 50.3 7.5 75 7-81 32-112 (275)
178 PF08675 RNA_bind: RNA binding 97.1 0.0032 7E-08 40.4 6.7 56 6-67 9-64 (87)
179 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0033 7.1E-08 42.5 6.1 63 124-188 6-79 (100)
180 PF10309 DUF2414: Protein of u 96.9 0.0067 1.4E-07 36.9 6.4 54 7-65 6-62 (62)
181 KOG2193 IGF-II mRNA-binding pr 96.7 0.00019 4.1E-09 59.7 -1.7 80 5-84 79-158 (584)
182 PF07576 BRAP2: BRCA1-associat 96.7 0.024 5.1E-07 39.2 8.5 67 5-71 12-80 (110)
183 PF15023 DUF4523: Protein of u 96.6 0.014 3E-07 41.6 7.1 72 5-81 85-160 (166)
184 PF10309 DUF2414: Protein of u 96.6 0.024 5.3E-07 34.5 7.1 54 125-182 6-62 (62)
185 PF03467 Smg4_UPF3: Smg-4/UPF3 96.6 0.0021 4.5E-08 48.6 3.1 79 4-82 5-97 (176)
186 PF03880 DbpA: DbpA RNA bindin 96.5 0.023 4.9E-07 36.3 7.3 58 17-80 12-74 (74)
187 KOG2068 MOT2 transcription fac 96.5 0.0011 2.5E-08 53.8 1.5 77 7-83 78-163 (327)
188 KOG0835 Cyclin L [General func 96.5 0.0054 1.2E-07 49.7 4.9 18 45-63 173-190 (367)
189 KOG4285 Mitotic phosphoprotein 96.4 0.011 2.3E-07 47.4 6.3 71 8-83 199-270 (350)
190 KOG2591 c-Mpl binding protein, 96.4 0.018 3.9E-07 50.0 8.0 91 54-188 146-245 (684)
191 PF04847 Calcipressin: Calcipr 96.4 0.015 3.2E-07 44.2 6.7 62 19-83 8-71 (184)
192 PF08952 DUF1866: Domain of un 96.2 0.028 6E-07 40.6 6.9 54 140-202 52-105 (146)
193 KOG2135 Proteins containing th 96.1 0.003 6.5E-08 53.5 2.0 76 4-83 370-446 (526)
194 KOG2253 U1 snRNP complex, subu 96.0 0.0035 7.5E-08 55.4 1.9 73 4-82 38-110 (668)
195 KOG2591 c-Mpl binding protein, 96.0 0.011 2.4E-07 51.2 4.9 69 5-77 174-246 (684)
196 PF08675 RNA_bind: RNA binding 95.9 0.054 1.2E-06 34.9 6.3 55 125-184 10-64 (87)
197 KOG2416 Acinus (induces apopto 95.8 0.012 2.6E-07 51.4 4.0 78 121-201 441-519 (718)
198 KOG0835 Cyclin L [General func 95.5 0.033 7.2E-07 45.3 5.5 12 135-146 212-223 (367)
199 KOG4849 mRNA cleavage factor I 95.3 0.039 8.5E-07 45.2 5.1 66 123-188 79-150 (498)
200 PF07576 BRAP2: BRCA1-associat 95.2 0.31 6.7E-06 33.7 8.7 64 125-188 14-80 (110)
201 KOG0804 Cytoplasmic Zn-finger 95.1 0.075 1.6E-06 45.2 6.5 66 6-71 74-141 (493)
202 PF07292 NID: Nmi/IFP 35 domai 95.0 0.16 3.4E-06 33.4 6.4 71 48-145 1-73 (88)
203 KOG2318 Uncharacterized conser 94.1 0.33 7.2E-06 42.8 8.1 78 3-80 171-305 (650)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 94.0 0.1 2.2E-06 39.6 4.4 65 124-188 7-81 (176)
205 KOG2253 U1 snRNP complex, subu 93.6 0.11 2.5E-06 46.2 4.6 65 119-188 35-99 (668)
206 KOG2135 Proteins containing th 93.5 0.28 6.1E-06 42.1 6.5 73 124-203 372-445 (526)
207 KOG4574 RNA-binding protein (c 93.4 0.058 1.3E-06 49.3 2.6 72 10-84 302-375 (1007)
208 PF10567 Nab6_mRNP_bdg: RNA-re 93.1 1 2.2E-05 36.5 8.7 77 5-81 14-106 (309)
209 KOG0804 Cytoplasmic Zn-finger 93.1 0.62 1.4E-05 39.9 7.9 65 124-188 74-141 (493)
210 PF15023 DUF4523: Protein of u 92.9 0.31 6.8E-06 34.9 5.1 62 122-186 84-149 (166)
211 KOG4285 Mitotic phosphoprotein 92.7 0.74 1.6E-05 37.3 7.5 61 124-188 197-257 (350)
212 PF14111 DUF4283: Domain of un 92.6 0.12 2.6E-06 38.1 2.9 112 17-160 28-141 (153)
213 PF11767 SET_assoc: Histone ly 92.4 0.88 1.9E-05 28.2 6.1 55 17-77 11-65 (66)
214 KOG4574 RNA-binding protein (c 91.5 0.13 2.8E-06 47.2 2.3 74 126-203 300-373 (1007)
215 KOG2068 MOT2 transcription fac 91.5 0.086 1.9E-06 43.2 1.1 65 124-188 77-151 (327)
216 PF11767 SET_assoc: Histone ly 91.2 1.2 2.5E-05 27.7 5.6 50 134-188 10-59 (66)
217 PF04847 Calcipressin: Calcipr 90.4 1.3 2.7E-05 33.8 6.4 61 136-202 7-69 (184)
218 KOG2888 Putative RNA binding p 89.5 0.18 3.8E-06 41.2 1.2 11 237-247 389-399 (453)
219 KOG4410 5-formyltetrahydrofola 88.6 1.5 3.2E-05 35.3 5.7 46 7-55 331-377 (396)
220 KOG2888 Putative RNA binding p 88.0 0.33 7.1E-06 39.7 1.9 9 140-148 228-236 (453)
221 PF03880 DbpA: DbpA RNA bindin 87.7 2.1 4.5E-05 27.2 5.2 59 134-201 11-74 (74)
222 KOG4019 Calcineurin-mediated s 87.7 0.57 1.2E-05 35.0 2.8 75 6-83 10-90 (193)
223 PF03468 XS: XS domain; Inter 85.3 1 2.2E-05 31.5 3.0 59 8-67 10-78 (116)
224 KOG4483 Uncharacterized conser 84.3 2.8 6E-05 35.5 5.4 56 4-63 389-445 (528)
225 PRK14548 50S ribosomal protein 83.5 5.8 0.00013 25.9 5.7 57 9-65 23-81 (84)
226 KOG2891 Surface glycoprotein [ 82.1 0.47 1E-05 37.9 0.2 67 4-70 147-247 (445)
227 TIGR03636 L23_arch archaeal ri 81.7 8.2 0.00018 24.8 5.7 55 9-63 16-72 (77)
228 KOG3580 Tight junction protein 80.2 11 0.00025 33.9 7.9 39 122-160 59-98 (1027)
229 KOG4246 Predicted DNA-binding 79.2 0.94 2E-05 41.8 1.2 7 47-53 61-67 (1194)
230 PF14893 PNMA: PNMA 75.9 3.5 7.5E-05 34.6 3.5 76 3-81 15-95 (331)
231 KOG4410 5-formyltetrahydrofola 75.2 10 0.00022 30.8 5.7 49 124-173 330-378 (396)
232 cd04908 ACT_Bt0572_1 N-termina 74.7 17 0.00036 22.2 6.6 47 20-68 15-62 (66)
233 PRK14548 50S ribosomal protein 74.6 21 0.00045 23.3 6.6 57 126-182 22-81 (84)
234 KOG1295 Nonsense-mediated deca 74.3 3.5 7.7E-05 34.7 3.1 65 6-70 7-77 (376)
235 KOG2295 C2H2 Zn-finger protein 74.1 0.43 9.3E-06 41.9 -2.2 70 5-74 230-302 (648)
236 KOG2812 Uncharacterized conser 71.4 6.1 0.00013 32.9 3.8 9 258-266 87-95 (426)
237 KOG4483 Uncharacterized conser 71.0 11 0.00023 32.2 5.1 56 123-181 390-446 (528)
238 COG5638 Uncharacterized conser 70.5 21 0.00046 30.5 6.8 39 3-41 143-186 (622)
239 PF15513 DUF4651: Domain of un 70.3 12 0.00026 22.8 3.9 18 21-38 9-26 (62)
240 TIGR03636 L23_arch archaeal ri 69.7 27 0.00058 22.4 6.7 57 126-182 15-74 (77)
241 KOG2891 Surface glycoprotein [ 66.5 3.5 7.5E-05 33.1 1.4 77 125-201 150-265 (445)
242 KOG2318 Uncharacterized conser 66.3 27 0.00058 31.4 6.8 68 121-188 171-294 (650)
243 PF09707 Cas_Cas2CT1978: CRISP 66.3 20 0.00043 23.6 4.7 50 4-53 23-72 (86)
244 cd04889 ACT_PDH-BS-like C-term 65.8 24 0.00052 20.5 5.7 42 21-62 13-55 (56)
245 PF02714 DUF221: Domain of unk 65.1 15 0.00032 30.8 5.1 34 48-83 1-34 (325)
246 PRK11634 ATP-dependent RNA hel 64.6 71 0.0015 29.7 9.7 60 17-82 498-562 (629)
247 KOG4213 RNA-binding protein La 64.0 12 0.00025 28.2 3.7 57 18-75 118-179 (205)
248 KOG4008 rRNA processing protei 61.7 6.7 0.00015 30.8 2.2 35 4-38 38-72 (261)
249 PF03439 Spt5-NGN: Early trans 61.1 20 0.00044 23.3 4.1 30 41-70 40-69 (84)
250 KOG2146 Splicing coactivator S 60.9 24 0.00051 28.7 5.1 30 49-78 56-86 (354)
251 PTZ00191 60S ribosomal protein 60.2 40 0.00087 24.6 5.7 53 10-62 85-139 (145)
252 PF07292 NID: Nmi/IFP 35 domai 58.5 5 0.00011 26.5 0.9 24 5-28 51-74 (88)
253 KOG4365 Uncharacterized conser 54.8 2.3 5.1E-05 36.4 -1.4 76 6-82 3-81 (572)
254 PRK11558 putative ssRNA endonu 53.6 32 0.0007 23.1 4.1 52 4-55 25-76 (97)
255 KOG1295 Nonsense-mediated deca 53.2 18 0.00038 30.7 3.4 64 125-188 8-78 (376)
256 PRK10629 EnvZ/OmpR regulon mod 52.8 82 0.0018 22.4 7.7 72 5-81 34-109 (127)
257 KOG2295 C2H2 Zn-finger protein 51.7 3.2 6.9E-05 36.7 -1.1 65 124-188 231-299 (648)
258 PF00403 HMA: Heavy-metal-asso 51.1 51 0.0011 19.5 7.0 54 8-64 1-58 (62)
259 PF07530 PRE_C2HC: Associated 50.9 54 0.0012 20.4 4.6 60 21-83 2-65 (68)
260 KOG3869 Uncharacterized conser 50.9 4.7 0.0001 34.4 -0.2 7 257-263 293-299 (450)
261 PTZ00191 60S ribosomal protein 50.2 98 0.0021 22.6 6.6 56 126-181 83-141 (145)
262 smart00596 PRE_C2HC PRE_C2HC d 49.5 48 0.001 20.7 4.1 58 139-203 2-64 (69)
263 PF14026 DUF4242: Protein of u 48.9 69 0.0015 20.5 7.9 63 8-71 2-72 (77)
264 PF11411 DNA_ligase_IV: DNA li 48.2 16 0.00034 19.6 1.6 16 16-31 19-34 (36)
265 PF12091 DUF3567: Protein of u 47.4 23 0.0005 23.0 2.6 17 134-150 60-76 (85)
266 KOG0156 Cytochrome P450 CYP2 s 46.6 45 0.00097 29.9 5.2 59 10-75 36-97 (489)
267 PF10567 Nab6_mRNP_bdg: RNA-re 43.8 68 0.0015 26.4 5.2 55 124-178 15-80 (309)
268 COG0445 GidA Flavin-dependent 43.3 1.3E+02 0.0028 27.5 7.3 38 122-159 299-336 (621)
269 PF08544 GHMP_kinases_C: GHMP 42.8 86 0.0019 19.8 5.9 44 139-183 37-80 (85)
270 TIGR01873 cas_CT1978 CRISPR-as 42.2 65 0.0014 21.2 4.1 50 4-54 23-74 (87)
271 PF11823 DUF3343: Protein of u 42.0 37 0.00081 21.3 3.0 26 46-71 2-27 (73)
272 PF15063 TC1: Thyroid cancer p 41.5 17 0.00036 23.0 1.2 25 9-33 28-52 (79)
273 KOG0862 Synaptobrevin/VAMP-lik 41.0 27 0.00058 27.2 2.5 30 21-55 89-119 (216)
274 PRK11230 glycolate oxidase sub 40.0 1E+02 0.0022 27.8 6.4 47 20-66 203-255 (499)
275 CHL00123 rps6 ribosomal protei 39.5 1.2E+02 0.0025 20.4 5.4 50 14-63 14-80 (97)
276 PF01071 GARS_A: Phosphoribosy 39.5 1E+02 0.0022 23.8 5.5 48 18-66 24-71 (194)
277 PF14111 DUF4283: Domain of un 37.7 22 0.00048 25.8 1.7 33 9-41 107-140 (153)
278 COG0030 KsgA Dimethyladenosine 37.4 50 0.0011 26.8 3.7 32 7-38 96-127 (259)
279 PF08442 ATP-grasp_2: ATP-gras 37.2 71 0.0015 24.8 4.4 54 18-71 25-81 (202)
280 TIGR02542 B_forsyth_147 Bacter 36.8 1.5E+02 0.0032 20.7 6.2 23 14-38 11-33 (145)
281 cd04882 ACT_Bt0572_2 C-termina 36.2 93 0.002 18.3 5.3 43 21-63 14-58 (65)
282 PRK05738 rplW 50S ribosomal pr 35.5 89 0.0019 20.8 4.1 31 9-39 22-54 (92)
283 PF02829 3H: 3H domain; Inter 35.3 1.4E+02 0.0031 20.1 6.1 51 17-67 8-58 (98)
284 PRK09631 DNA topoisomerase IV 35.1 2.8E+02 0.0061 26.0 8.4 59 6-65 220-282 (635)
285 PF08734 GYD: GYD domain; Int 35.0 1.3E+02 0.0029 19.8 5.9 46 138-183 22-68 (91)
286 KOG4019 Calcineurin-mediated s 34.7 33 0.00072 26.0 2.1 72 125-202 11-88 (193)
287 cd04879 ACT_3PGDH-like ACT_3PG 34.4 1E+02 0.0022 18.2 5.2 39 17-55 10-50 (71)
288 PRK08559 nusG transcription an 34.0 1.8E+02 0.0038 21.4 5.9 33 33-67 36-68 (153)
289 PHA01632 hypothetical protein 33.9 46 0.00099 19.6 2.1 21 9-29 19-39 (64)
290 PF15407 Spo7_2_N: Sporulation 33.8 18 0.00038 22.5 0.5 24 5-28 26-49 (67)
291 COG0150 PurM Phosphoribosylami 33.4 10 0.00022 31.8 -0.8 57 10-67 252-321 (345)
292 KOG2187 tRNA uracil-5-methyltr 33.1 44 0.00095 29.9 2.9 39 45-83 63-101 (534)
293 PRK11901 hypothetical protein; 32.8 2E+02 0.0043 24.2 6.4 64 119-186 240-308 (327)
294 PF00398 RrnaAD: Ribosomal RNA 32.4 57 0.0012 26.4 3.4 31 6-36 97-129 (262)
295 KOG2854 Possible pfkB family c 32.2 2.8E+02 0.0062 23.4 7.2 46 4-50 79-124 (343)
296 cd00027 BRCT Breast Cancer Sup 31.9 68 0.0015 18.8 3.1 26 7-32 2-27 (72)
297 PF00276 Ribosomal_L23: Riboso 31.5 1.4E+02 0.0029 19.8 4.5 49 9-57 22-85 (91)
298 cd04883 ACT_AcuB C-terminal AC 31.3 1.2E+02 0.0027 18.3 6.4 50 19-69 14-67 (72)
299 PF06014 DUF910: Bacterial pro 30.9 32 0.0007 21.0 1.3 17 20-36 4-20 (62)
300 PF14026 DUF4242: Protein of u 30.7 1.5E+02 0.0032 18.9 8.2 60 127-187 3-71 (77)
301 COG3254 Uncharacterized conser 30.6 1.8E+02 0.0039 19.9 5.4 42 21-63 27-69 (105)
302 COG5193 LHP1 La protein, small 29.5 26 0.00057 30.0 1.0 57 7-63 175-244 (438)
303 PF08156 NOP5NT: NOP5NT (NUC12 29.4 21 0.00045 22.2 0.3 39 21-66 27-65 (67)
304 cd04909 ACT_PDH-BS C-terminal 29.1 1.3E+02 0.0029 18.0 5.7 47 19-65 14-62 (69)
305 PF02714 DUF221: Domain of unk 29.1 70 0.0015 26.7 3.5 22 165-186 1-22 (325)
306 COG4010 Uncharacterized protei 29.1 1.9E+02 0.004 21.1 4.9 47 131-183 118-164 (170)
307 COG0090 RplB Ribosomal protein 28.8 81 0.0018 25.5 3.5 32 121-152 124-155 (275)
308 KOG4008 rRNA processing protei 28.3 45 0.00098 26.4 2.0 32 124-155 40-71 (261)
309 COG0045 SucC Succinyl-CoA synt 28.3 3.4E+02 0.0074 23.5 7.2 66 18-83 26-98 (387)
310 COG2608 CopZ Copper chaperone 27.5 1.6E+02 0.0034 18.3 5.2 46 6-54 3-48 (71)
311 PF08206 OB_RNB: Ribonuclease 27.5 17 0.00037 21.7 -0.4 37 44-81 7-44 (58)
312 PF11910 NdhO: Cyanobacterial 27.5 56 0.0012 20.0 1.9 23 26-55 31-53 (67)
313 PF05189 RTC_insert: RNA 3'-te 26.7 2E+02 0.0044 19.3 5.0 45 8-52 12-64 (103)
314 PF12829 Mhr1: Transcriptional 25.3 81 0.0017 21.0 2.5 52 14-66 20-72 (91)
315 PLN02805 D-lactate dehydrogena 25.2 1.5E+02 0.0032 27.3 4.9 49 18-66 278-332 (555)
316 TIGR00405 L26e_arch ribosomal 25.1 2.7E+02 0.0058 20.1 5.7 27 41-67 34-60 (145)
317 PRK11901 hypothetical protein; 25.1 2E+02 0.0044 24.2 5.2 57 6-67 245-306 (327)
318 TIGR00387 glcD glycolate oxida 25.0 2.1E+02 0.0046 24.9 5.8 49 17-65 143-197 (413)
319 PF01782 RimM: RimM N-terminal 24.8 1.7E+02 0.0036 18.7 4.0 23 45-68 54-76 (84)
320 PF05036 SPOR: Sporulation rel 24.8 43 0.00093 20.6 1.2 60 7-66 5-65 (76)
321 KOG1999 RNA polymerase II tran 24.5 2.2E+02 0.0048 27.8 5.9 31 41-71 206-236 (1024)
322 cd04931 ACT_PAH ACT domain of 24.3 2.2E+02 0.0047 18.8 5.6 48 19-66 27-79 (90)
323 PRK08559 nusG transcription an 24.2 2.9E+02 0.0063 20.2 6.1 34 151-185 36-69 (153)
324 PRK15464 cold shock-like prote 23.9 64 0.0014 20.2 1.8 10 45-54 16-25 (70)
325 TIGR00755 ksgA dimethyladenosi 23.1 1E+02 0.0022 24.7 3.3 24 8-31 96-119 (253)
326 KOG2854 Possible pfkB family c 23.0 1.1E+02 0.0024 25.8 3.4 62 5-67 159-233 (343)
327 cd04878 ACT_AHAS N-terminal AC 22.8 1.8E+02 0.0038 17.2 7.0 59 8-66 2-63 (72)
328 COG0018 ArgS Arginyl-tRNA synt 22.2 6.4E+02 0.014 23.4 9.2 99 19-160 59-166 (577)
329 PF13689 DUF4154: Domain of un 22.0 3.1E+02 0.0067 19.7 6.9 36 45-81 26-61 (145)
330 cd04904 ACT_AAAH ACT domain of 21.7 2.1E+02 0.0046 17.7 6.9 50 18-67 12-65 (74)
331 smart00738 NGN In Spt5p, this 21.6 2.1E+02 0.0045 19.0 4.2 24 45-68 59-82 (106)
332 PF09902 DUF2129: Uncharacteri 21.6 2.2E+02 0.0048 17.9 4.1 39 26-70 16-54 (71)
333 PRK00911 dihydroxy-acid dehydr 21.6 4.3E+02 0.0092 24.3 6.9 32 50-83 402-433 (552)
334 TIGR02516 type_III_yscC type I 21.5 1.3E+02 0.0029 26.7 3.9 64 18-81 6-73 (462)
335 PRK10905 cell division protein 21.4 2.8E+02 0.0061 23.3 5.3 60 123-185 246-309 (328)
336 cd04905 ACT_CM-PDT C-terminal 21.4 2.2E+02 0.0048 17.8 5.9 49 19-67 14-68 (80)
337 PTZ00338 dimethyladenosine tra 21.3 1E+02 0.0022 25.5 3.0 22 8-29 103-124 (294)
338 smart00195 DSPc Dual specifici 21.1 2.5E+02 0.0055 19.7 4.8 71 7-79 6-85 (138)
339 cd04903 ACT_LSD C-terminal ACT 21.1 1.9E+02 0.0042 17.0 7.0 46 19-65 12-59 (71)
340 PRK15463 cold shock-like prote 20.8 82 0.0018 19.7 1.8 10 45-54 16-25 (70)
341 PRK02886 hypothetical protein; 20.7 2.6E+02 0.0057 18.4 4.1 38 27-70 21-58 (87)
342 PRK02302 hypothetical protein; 20.5 2.6E+02 0.0056 18.5 4.1 38 27-70 23-60 (89)
343 KOG2855 Ribokinase [Carbohydra 20.0 1.6E+02 0.0034 24.9 3.7 50 120-169 57-107 (330)
344 COG3102 Uncharacterized protei 20.0 50 0.0011 24.7 0.8 14 23-36 56-69 (185)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=1.8e-33 Score=232.61 Aligned_cols=163 Identities=23% Similarity=0.332 Sum_probs=142.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||+++|+++|+++|..||+|++|+|+. ++.+++||||+|.++++|++||+.||+..|.+++|+|.++
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a 184 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYA 184 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecc
Confidence 3678999999999999999999999999999999954 5678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... .....+|||.|||..+++++|+++|++||.|..+.++.+.
T Consensus 185 ~p~~~-----------------------------------~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~ 229 (346)
T TIGR01659 185 RPGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK 229 (346)
T ss_pred ccccc-----------------------------------ccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC
Confidence 64310 1123689999999999999999999999999999998876
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ +||||+|.+.++|++|++.||+..+.. ....|.|..++.
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g--~~~~l~V~~a~~ 274 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEG--GSQPLTVRLAEE 274 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCC--CceeEEEEECCc
Confidence 43 599999999999999999999998862 136777777763
No 2
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=100.00 E-value=6.7e-32 Score=194.20 Aligned_cols=194 Identities=66% Similarity=1.109 Sum_probs=162.0
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 m~~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|+++.+++|||+|||.++-+.+|+.||.+||.|.+|.|+....+..||||+|+++.+|+.||..-+|..++|+.|.|+++
T Consensus 1 ~~gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 1 MSGRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred CCCcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 78899999999999999999999999999999999999887777899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.... ......+.+.+++.+ +.+.+....++.......|.|.+||++..+++|++++.+.|.|++..+.++.
T Consensus 81 rggr----~s~~~~G~y~gggrg-----Ggg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg 151 (241)
T KOG0105|consen 81 RGGR----SSSDRRGSYSGGGRG-----GGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG 151 (241)
T ss_pred cCCC----cccccccccCCCCCC-----CCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc
Confidence 8652 222223333332222 2333334445667788999999999999999999999999999999999885
Q ss_pred CCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCCC
Q 024276 161 EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 161 ~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
++.|+|...++++-|+.+|+...+........|.|.......+
T Consensus 152 ---~GvV~~~r~eDMkYAvr~ld~~~~~seGe~~yirv~~~~~~~~ 194 (241)
T KOG0105|consen 152 ---VGVVEYLRKEDMKYAVRKLDDQKFRSEGETAYIRVRGDENRDQ 194 (241)
T ss_pred ---ceeeeeeehhhHHHHHHhhccccccCcCcEeeEEecccCCCcc
Confidence 8999999999999999999999887666667777776654433
No 3
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.4e-31 Score=230.96 Aligned_cols=174 Identities=20% Similarity=0.338 Sum_probs=145.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||..+++++|+++|..||+|..|.|.. ++.++|||||+|.+.++|..|+..|||..|+|+.|.|...
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 3568999999999999999999999999999999954 5788999999999999999999999999999999999854
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
......... ............+|||+||+..+++++|+++|+.||.|..+.+..+.
T Consensus 185 ~~~p~a~~~------------------------~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~ 240 (612)
T TIGR01645 185 SNMPQAQPI------------------------IDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP 240 (612)
T ss_pred ccccccccc------------------------cccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC
Confidence 332110000 00001111234689999999999999999999999999999999875
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCC
Q 024276 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+ |||||+|++.++|.+|++.||+..++ |+.|+|..+..++
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elg----Gr~LrV~kAi~pP 285 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVTPP 285 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeC----CeEEEEEecCCCc
Confidence 43 69999999999999999999999999 9999998876543
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.1e-30 Score=217.97 Aligned_cols=162 Identities=22% Similarity=0.343 Sum_probs=141.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.++|||+|||..+|+++|+++|+.||+|.+|+|+. ++.++|||||+|.++++|.+||..|||..|.|+.|.|.++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3578999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.+... .....+|||+|||..+++++|.++|..||.|..+.++.+.
T Consensus 81 ~~~~~-----------------------------------~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~ 125 (352)
T TIGR01661 81 RPSSD-----------------------------------SIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN 125 (352)
T ss_pred ccccc-----------------------------------ccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC
Confidence 65411 1123689999999999999999999999999999988764
Q ss_pred C----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 161 ~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
. .|||||+|++.++|+.|++.|||..+.+. ...|.|..+.
T Consensus 126 ~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~--~~~i~v~~a~ 169 (352)
T TIGR01661 126 VTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGC--TEPITVKFAN 169 (352)
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCC--ceeEEEEECC
Confidence 3 36999999999999999999999987621 3466777665
No 5
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.97 E-value=5.3e-30 Score=223.65 Aligned_cols=172 Identities=21% Similarity=0.307 Sum_probs=145.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||+|.+|.|+. ++.++|||||+|.+.++|.+||. |+|..|.|++|.|.++
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 4688999999999999999999999999999999965 46789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.............. ........+|||+|||..+++++|+++|+.||.|..+.++.+.
T Consensus 166 ~~~~~~~~~~~~~~-----------------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~ 222 (457)
T TIGR01622 166 QAEKNRAAKAATHQ-----------------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP 222 (457)
T ss_pred chhhhhhhhccccc-----------------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC
Confidence 54322111100000 0001125799999999999999999999999999999999876
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ |||||+|.+.++|..|+..|+|..|. ++.|.|.++..
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~----g~~i~v~~a~~ 265 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELA----GRPIKVGYAQD 265 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEEC----CEEEEEEEccC
Confidence 54 69999999999999999999999998 89999999763
No 6
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=4e-29 Score=217.91 Aligned_cols=170 Identities=15% Similarity=0.143 Sum_probs=139.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc--CCcccCCceEEEEecCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~~~~~ 82 (270)
|+++|||+|||..+++++|+++|+.||+|..|.++.. ++||||+|.++++|..|+..| ++..|.|++|.|+++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 6899999999999999999999999999999999864 789999999999999999864 78999999999999875
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC
Q 024276 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
........ ... ..........|+|.||++.+++++|.++|+.||.|..+.++.+...
T Consensus 78 ~~~~~~~~----~~~-------------------~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~~ 134 (481)
T TIGR01649 78 QEIKRDGN----SDF-------------------DSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNNV 134 (481)
T ss_pred cccccCCC----Ccc-------------------cCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCCc
Confidence 42111100 000 0001112357999999999999999999999999999999887766
Q ss_pred cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
++|||+|.+.++|.+|++.|||..|.+. ...|+|.+++
T Consensus 135 ~~afVef~~~~~A~~A~~~Lng~~i~~~--~~~l~v~~sk 172 (481)
T TIGR01649 135 FQALVEFESVNSAQHAKAALNGADIYNG--CCTLKIEYAK 172 (481)
T ss_pred eEEEEEECCHHHHHHHHHHhcCCcccCC--ceEEEEEEec
Confidence 7999999999999999999999998621 2467777665
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.2e-28 Score=214.88 Aligned_cols=192 Identities=16% Similarity=0.189 Sum_probs=142.7
Q ss_pred CCCCeEEEcCCCC-CccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||+ .+|+++|+++|+.||.|..|+++.+ .+|||||+|.++++|..||..|||..|.|++|.|.+++.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~ 350 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQ 350 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccc
Confidence 4788999999998 6999999999999999999999765 369999999999999999999999999999999999876
Q ss_pred CCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCc--eeEEEEe
Q 024276 83 GSGRGPSSSD---RRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVS 157 (270)
Q Consensus 83 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~ 157 (270)
.......... ....+... .....................+..+|||.|||..+++++|+++|+.||. |..+++.
T Consensus 351 ~~~~~~~~~~~~~~~~~~~d~-~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~~ 429 (481)
T TIGR01649 351 QNVQPPREGQLDDGLTSYKDY-SSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKFF 429 (481)
T ss_pred ccccCCCCCcCcCCCcccccc-cCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEEe
Confidence 5322111100 00000000 0000000000000111112346689999999999999999999999998 7778776
Q ss_pred eCC--CCcEEEEEecChhhHHHHHHhcCCccccCccccc------ceeeecCC
Q 024276 158 RDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG------RITVKRYD 202 (270)
Q Consensus 158 ~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~------~i~v~~~~ 202 (270)
... ..++|||+|++.++|.+|+..|||..|. +. .|+|.+++
T Consensus 430 ~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~----~~~~~~~~~lkv~fs~ 478 (481)
T TIGR01649 430 PKDNERSKMGLLEWESVEDAVEALIALNHHQLN----EPNGSAPYHLKVSFST 478 (481)
T ss_pred cCCCCcceeEEEEcCCHHHHHHHHHHhcCCccC----CCCCCccceEEEEecc
Confidence 543 2369999999999999999999999998 54 47777764
No 8
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=1.9e-28 Score=207.14 Aligned_cols=196 Identities=21% Similarity=0.275 Sum_probs=144.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCC--ceEEEEe
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
..++|||+|||..+++++|.++|..||.|..+.+.. ++.++|||||+|.+.++|..|+..|||..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999855 35679999999999999999999999999977 5788888
Q ss_pred cCCCCCCCCCCCC-----------CCCCCC-----CCC-CCC------CC--------------C---------CCCCCC
Q 024276 80 AHGGSGRGPSSSD-----------RRGGYG-----GGG-AGG------AG--------------G---------AGAGAG 113 (270)
Q Consensus 80 ~~~~~~~~~~~~~-----------~~~~~~-----~~~-~~~------~~--------------~---------~~~~~~ 113 (270)
+............ ...... +.. ... .. . ......
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 7654311100000 000000 000 000 00 0 000000
Q ss_pred ----------CC-CCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHH
Q 024276 114 ----------AG-RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYA 178 (270)
Q Consensus 114 ----------~~-~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a 178 (270)
.+ ........+.+|||+|||..+++++|.++|++||.|..+.++.+.. .|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 00 0000122345799999999999999999999999999999998863 36999999999999999
Q ss_pred HHhcCCccccCcccccceeeecCCCC
Q 024276 179 IRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 179 ~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
+..|||..+. |+.|+|.+....
T Consensus 328 i~~lnG~~~~----gr~i~V~~~~~~ 349 (352)
T TIGR01661 328 ILSLNGYTLG----NRVLQVSFKTNK 349 (352)
T ss_pred HHHhCCCEEC----CeEEEEEEccCC
Confidence 9999999999 999999987643
No 9
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=5.1e-29 Score=189.63 Aligned_cols=170 Identities=20% Similarity=0.285 Sum_probs=145.4
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
-|||+.|.+.++-++|++.|..||+|.+++|+. |++++||+||.|.+.++|+.||..|||..|+++.|+..++.-+.
T Consensus 64 hvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp 143 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKP 143 (321)
T ss_pred eEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCc
Confidence 489999999999999999999999999999955 58999999999999999999999999999999999999987653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcE
Q 024276 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~ 164 (270)
.... ...-.....+.......++|||+|++..+++++|++.|+.||.|..|.+.++. ||
T Consensus 144 ~e~n-------------------~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q--GY 202 (321)
T KOG0148|consen 144 SEMN-------------------GKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ--GY 202 (321)
T ss_pred cccC-------------------CCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc--ce
Confidence 1000 00012223344556677999999999999999999999999999999999886 69
Q ss_pred EEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 165 afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+||.|++.|.|..||..|||.++. +..++-...+
T Consensus 203 aFVrF~tkEaAahAIv~mNntei~----G~~VkCsWGK 236 (321)
T KOG0148|consen 203 AFVRFETKEAAAHAIVQMNNTEIG----GQLVRCSWGK 236 (321)
T ss_pred EEEEecchhhHHHHHHHhcCceeC----ceEEEEeccc
Confidence 999999999999999999999998 6666655443
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.96 E-value=2.3e-28 Score=218.08 Aligned_cols=158 Identities=27% Similarity=0.452 Sum_probs=138.6
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+|||+|||+++|+++|+++|+.||+|.+|.|.. ++.++|||||+|.+.++|.+|+..||+..|.|++|.|.++....
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~~ 81 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRDP 81 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccccc
Confidence 799999999999999999999999999999965 46788999999999999999999999999999999999875321
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC--
Q 024276 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-- 162 (270)
.. ......+|||+|||.++++++|.++|+.||.|..+++..+..+
T Consensus 82 ~~---------------------------------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~s 128 (562)
T TIGR01628 82 SL---------------------------------RRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKS 128 (562)
T ss_pred cc---------------------------------cccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCc
Confidence 10 0112257999999999999999999999999999999887543
Q ss_pred -cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 163 -TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 -g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|||||+|++.++|..|++++||..+. +..|.|....
T Consensus 129 kg~afV~F~~~e~A~~Ai~~lng~~~~----~~~i~v~~~~ 165 (562)
T TIGR01628 129 RGYGFVHFEKEESAKAAIQKVNGMLLN----DKEVYVGRFI 165 (562)
T ss_pred ccEEEEEECCHHHHHHHHHHhcccEec----CceEEEeccc
Confidence 79999999999999999999999988 8888876554
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.96 E-value=8e-28 Score=208.85 Aligned_cols=191 Identities=21% Similarity=0.281 Sum_probs=140.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccC-CceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
..++|||+|||.++++++|+++|++||.|.+|+|+. ++.++|||||+|.+.++|++||..||+..|. |+.|.|..+.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 358999999999999999999999999999999975 4788999999999999999999999999884 7777776553
Q ss_pred CCCCCC-----CCCC-----CCCCCC--------------CCCCCCCCC-----------------CCCC----C-----
Q 024276 82 GGSGRG-----PSSS-----DRRGGY--------------GGGGAGGAG-----------------GAGA----G----- 111 (270)
Q Consensus 82 ~~~~~~-----~~~~-----~~~~~~--------------~~~~~~~~~-----------------~~~~----~----- 111 (270)
...... .... +....+ ......+-+ ..+. +
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~V 216 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIAV 216 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEEE
Confidence 211000 0000 000000 000000000 0000 0
Q ss_pred ----CCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhc--CceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCc
Q 024276 112 ----AGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 112 ----~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~ 185 (270)
..............+|||+||+..+++++|+++|+.| |.|..+.++.+ ||||+|++.++|.+|++.|||.
T Consensus 217 dwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg----fAFVeF~s~e~A~kAi~~lnG~ 292 (578)
T TIGR01648 217 DWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD----YAFVHFEDREDAVKAMDELNGK 292 (578)
T ss_pred EeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC----eEEEEeCCHHHHHHHHHHhCCC
Confidence 0000001112335689999999999999999999999 99999988763 9999999999999999999999
Q ss_pred cccCcccccceeeecCCC
Q 024276 186 EFRNPWARGRITVKRYDR 203 (270)
Q Consensus 186 ~~~~~~~~~~i~v~~~~~ 203 (270)
.|. ++.|.|.+++.
T Consensus 293 ~i~----Gr~I~V~~Akp 306 (578)
T TIGR01648 293 ELE----GSEIEVTLAKP 306 (578)
T ss_pred EEC----CEEEEEEEccC
Confidence 999 99999998864
No 12
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=2e-27 Score=210.17 Aligned_cols=185 Identities=18% Similarity=0.293 Sum_probs=137.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcc------------cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKY------------GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~------------G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
...++|||+|||+.+|+++|.++|.+| +.|..+.+. ..++||||+|.++++|..||. |||+.|.
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~~ 248 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIYS 248 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEee
Confidence 568899999999999999999999975 234444443 348999999999999999996 9999999
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCce
Q 024276 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (270)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 151 (270)
|.+|.|.................. ....... .................+|||+|||..+++++|.++|+.||.|
T Consensus 249 g~~l~v~r~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i 322 (509)
T TIGR01642 249 NVFLKIRRPHDYIPVPQITPEVSQ----KNPDDNA--KNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDL 322 (509)
T ss_pred CceeEecCccccCCccccCCCCCC----CCCcccc--cccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCe
Confidence 999999765543211110000000 0000000 0000000111122456799999999999999999999999999
Q ss_pred eEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 152 CFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+.++.+.. .|||||+|.+.++|..|++.|+|..|. +..|.|..+.
T Consensus 323 ~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~----~~~l~v~~a~ 373 (509)
T TIGR01642 323 KAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTG----DNKLHVQRAC 373 (509)
T ss_pred eEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEECc
Confidence 9999887653 369999999999999999999999998 8889988875
No 13
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.95 E-value=2.5e-28 Score=187.64 Aligned_cols=146 Identities=33% Similarity=0.595 Sum_probs=136.1
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
-.|||+|||.++++.+|+.||++||+|.+|.|+ +.||||..++.+.|..||.+||+..|+|..|.|+.++++.
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs-- 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS-- 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccccC--
Confidence 479999999999999999999999999999999 6699999999999999999999999999999999998762
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEE
Q 024276 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGV 166 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~af 166 (270)
....+|+|+|+.+.++.++|+..|++||+|+.++|.++ |+|
T Consensus 76 -----------------------------------k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd----y~f 116 (346)
T KOG0109|consen 76 -----------------------------------KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD----YAF 116 (346)
T ss_pred -----------------------------------CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc----eeE
Confidence 12368999999999999999999999999999999996 999
Q ss_pred EEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 167 VDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 167 v~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|.|+..++|..|+..|+|.++. |+.+.|....
T Consensus 117 vh~d~~eda~~air~l~~~~~~----gk~m~vq~st 148 (346)
T KOG0109|consen 117 VHFDRAEDAVEAIRGLDNTEFQ----GKRMHVQLST 148 (346)
T ss_pred EEEeeccchHHHHhcccccccc----cceeeeeeec
Confidence 9999999999999999999999 8888877654
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.95 E-value=6.6e-27 Score=206.89 Aligned_cols=187 Identities=18% Similarity=0.279 Sum_probs=140.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||+|||..+|+++|+++|..||.|..+.|+. ++.++|||||+|.+.++|..||..|||+.|+|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 467999999999999999999999999999999854 57789999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCC----------CHHHHHHHhhhcCce
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA----------SWQDLKDHMRKAGDV 151 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~g~v 151 (270)
............ ..... .....+...........++.+|+|.|+.... ..++|+++|++||.|
T Consensus 374 ~~~~~~~~~~~~--~~~~~-----~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v 446 (509)
T TIGR01642 374 VGANQATIDTSN--GMAPV-----TLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPL 446 (509)
T ss_pred cCCCCCCccccc--ccccc-----ccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCe
Confidence 542211110000 00000 0000000000001122356789999986321 236799999999999
Q ss_pred eEEEEeeCCC-------CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 152 CFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..|.|+.+.. .|++||+|++.++|.+|+..|||..|. |+.|.+.+..
T Consensus 447 ~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~----gr~v~~~~~~ 500 (509)
T TIGR01642 447 INIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFN----DRVVVAAFYG 500 (509)
T ss_pred eEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEEeC
Confidence 9999986521 269999999999999999999999999 9999887764
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.95 E-value=2.3e-27 Score=211.68 Aligned_cols=178 Identities=22% Similarity=0.361 Sum_probs=145.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccC----CceEEEE
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRVE 78 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l~v~ 78 (270)
..++|||+|||.++|+++|+++|+.||.|..+.+..+ +.++|||||+|.+.++|.+|+..||+..|. |+.|.|.
T Consensus 177 ~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~ 256 (562)
T TIGR01628 177 KFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVG 256 (562)
T ss_pred CCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEee
Confidence 4578999999999999999999999999999999654 567899999999999999999999999999 9999999
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEee
Q 024276 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR 158 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~ 158 (270)
.+.................. ..........+|||+||+..+++++|+++|+.||.|..++++.
T Consensus 257 ~a~~k~er~~~~~~~~~~~~-----------------~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~ 319 (562)
T TIGR01628 257 RAQKRAEREAELRRKFEELQ-----------------QERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVML 319 (562)
T ss_pred cccChhhhHHHHHhhHHhhh-----------------hhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEE
Confidence 87765332111000000000 0001123456899999999999999999999999999999998
Q ss_pred CCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 159 DSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 159 ~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+..+ |||||+|.+.++|.+|+..|||..+. ++.|.|..+.+
T Consensus 320 d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~----gk~l~V~~a~~ 363 (562)
T TIGR01628 320 DEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLG----GKPLYVALAQR 363 (562)
T ss_pred CCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeC----CceeEEEeccC
Confidence 7533 79999999999999999999999998 99999988764
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=1.9e-27 Score=170.98 Aligned_cols=165 Identities=22% Similarity=0.309 Sum_probs=142.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
....||||+||+..++++.|++||-++|+|+++.+.. +...+|||||+|.++|+|+-|++.||.+.+.|++|+|..+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ka 86 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKA 86 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEec
Confidence 4567999999999999999999999999999999954 4567999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeE-EEEeeC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~ 159 (270)
... ......+..|||+||.+.+++..|-+.|+.||.+.. -+++.+
T Consensus 87 s~~----------------------------------~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd 132 (203)
T KOG0131|consen 87 SAH----------------------------------QKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRD 132 (203)
T ss_pred ccc----------------------------------cccccccccccccccCcchhHHHHHHHHHhccccccCCccccc
Confidence 622 111123378999999999999999999999999876 366666
Q ss_pred CCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCCC
Q 024276 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 160 ~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
..+ +|+||.|.+.+.+..|+..|||..+. .+.|.|..+.+...
T Consensus 133 ~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~----nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 133 PDTGNPKGFGFINYASFEASDAAIGSMNGQYLC----NRPITVSYAFKKDT 179 (203)
T ss_pred ccCCCCCCCeEEechhHHHHHHHHHHhccchhc----CCceEEEEEEecCC
Confidence 653 59999999999999999999999999 78888888765433
No 17
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.4e-27 Score=192.59 Aligned_cols=169 Identities=22% Similarity=0.357 Sum_probs=144.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccc---CCceEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRV 77 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v 77 (270)
.+.-+|||+-||..++|.||+++|++||.|.+|.|++ ++.++|||||.|++.++|.+|+..|++... ...+|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 3567899999999999999999999999999999965 578899999999999999999999988554 3568888
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEe
Q 024276 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~ 157 (270)
.++....... .....|||+-|+..+++.+++++|.+||.|++|.|+
T Consensus 112 k~Ad~E~er~----------------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~il 157 (510)
T KOG0144|consen 112 KYADGERERI----------------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYIL 157 (510)
T ss_pred cccchhhhcc----------------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhhe
Confidence 8887552211 234789999999999999999999999999999999
Q ss_pred eCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCCCC
Q 024276 158 RDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSR 207 (270)
Q Consensus 158 ~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~r 207 (270)
++..+ |||||.|.+.+.|..|++.|||..-. ......+-|++++-.+.+
T Consensus 158 rd~~~~sRGcaFV~fstke~A~~Aika~ng~~tm-eGcs~PLVVkFADtqkdk 209 (510)
T KOG0144|consen 158 RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTM-EGCSQPLVVKFADTQKDK 209 (510)
T ss_pred ecccccccceeEEEEehHHHHHHHHHhhccceee-ccCCCceEEEecccCCCc
Confidence 98766 79999999999999999999998654 223677889998854443
No 18
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.2e-26 Score=188.15 Aligned_cols=190 Identities=23% Similarity=0.295 Sum_probs=142.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCccc-CCceEEEEec
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNF-DGCRLRVELA 80 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~-~g~~l~v~~~ 80 (270)
-.|-||||.||.++.|++|.-||+..|+|-++.|+.+ |.++|||||+|.+.++|+.||+.||+..| .|+.|.|..+
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~S 161 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVS 161 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEe
Confidence 3588999999999999999999999999999999764 78999999999999999999999999999 5999988877
Q ss_pred CCCCCCC-------CCCCCCCC-----------------CCCCCCCCCCC-------------------C----CCCC--
Q 024276 81 HGGSGRG-------PSSSDRRG-----------------GYGGGGAGGAG-------------------G----AGAG-- 111 (270)
Q Consensus 81 ~~~~~~~-------~~~~~~~~-----------------~~~~~~~~~~~-------------------~----~~~~-- 111 (270)
....... +...+-.. ......+.+-+ + -+..
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~t 241 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAIT 241 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcce
Confidence 5332100 00000000 00000000000 0 0000
Q ss_pred -----CCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc
Q 024276 112 -----AGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 112 -----~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
+..............|||.||+.++|++.|+++|+.||.|..|+.++| ||||.|.+.++|.+|++.+||++
T Consensus 242 VdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD----YaFVHf~eR~davkAm~~~ngke 317 (506)
T KOG0117|consen 242 VDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD----YAFVHFAEREDAVKAMKETNGKE 317 (506)
T ss_pred eeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc----eeEEeecchHHHHHHHHHhcCce
Confidence 000111112233458999999999999999999999999999998877 99999999999999999999999
Q ss_pred ccCcccccceeeecCC
Q 024276 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
|. |..|.|..++
T Consensus 318 ld----G~~iEvtLAK 329 (506)
T KOG0117|consen 318 LD----GSPIEVTLAK 329 (506)
T ss_pred ec----CceEEEEecC
Confidence 99 8888887776
No 19
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=6.7e-26 Score=197.86 Aligned_cols=193 Identities=23% Similarity=0.347 Sum_probs=141.3
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|..|+..|||+.|.|++|.|.++..
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~ 265 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQD 265 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccC
Confidence 58999999999999999999999999999999965 357799999999999999999999999999999999999764
Q ss_pred CCCCCCCCCCC----CCCCCC------------------CCCCCCCCCCCCC------------------------C---
Q 024276 83 GSGRGPSSSDR----RGGYGG------------------GGAGGAGGAGAGA------------------------G--- 113 (270)
Q Consensus 83 ~~~~~~~~~~~----~~~~~~------------------~~~~~~~~~~~~~------------------------~--- 113 (270)
........... .....+ ...++....+... .
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (457)
T TIGR01622 266 STYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGALA 345 (457)
T ss_pred CCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhccccccccccccccccccccccc
Confidence 32211110000 000000 0000000000000 0
Q ss_pred --C-CCCCC---CCCCcceEEEeCCCCCCC----------HHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHH
Q 024276 114 --A-GRFGI---SRHSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKY 177 (270)
Q Consensus 114 --~-~~~~~---~~~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~ 177 (270)
. ..... ......+|+|.||....+ .++|.++|.+||.|+.+.+......|++||+|.+.++|..
T Consensus 346 ~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~~~e~A~~ 425 (457)
T TIGR01622 346 IMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFSSVDAALA 425 (457)
T ss_pred cccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEECCHHHHHH
Confidence 0 00000 124567899999965544 3679999999999999999866667899999999999999
Q ss_pred HHHhcCCccccCcccccceeeecCC
Q 024276 178 AIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 178 a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|++.|||..|. |+.|.+.+..
T Consensus 426 A~~~lnGr~f~----gr~i~~~~~~ 446 (457)
T TIGR01622 426 AFQALNGRYFG----GKMITAAFVV 446 (457)
T ss_pred HHHHhcCcccC----CeEEEEEEEc
Confidence 99999999999 9999887754
No 20
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.3e-26 Score=174.38 Aligned_cols=163 Identities=22% Similarity=0.334 Sum_probs=143.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.-+.|.|.-||.++|+|+|+.||...|+|+.|+++. +|.+.||+||.|-+++||++|+..|||..+..+.|+|.+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyAR 119 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYAR 119 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEecc
Confidence 346788999999999999999999999999999955 58899999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
+... ...+..|||.+||..++..+|+++|..||.|.--.|..+.-
T Consensus 120 PSs~-----------------------------------~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv 164 (360)
T KOG0145|consen 120 PSSD-----------------------------------SIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV 164 (360)
T ss_pred CChh-----------------------------------hhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc
Confidence 7622 12236899999999999999999999999998877777765
Q ss_pred C----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024276 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 162 ~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
+ |.+||.|+...+|++||..|||..-.+ ....|.|+++..+
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g--~tepItVKFannP 209 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSG--CTEPITVKFANNP 209 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCC--CCCCeEEEecCCc
Confidence 4 599999999999999999999988652 2567888888754
No 21
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=9.4e-26 Score=187.06 Aligned_cols=184 Identities=18% Similarity=0.272 Sum_probs=147.3
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..||||++||+.++.++|.++|+.+|+|..+.+..+ +.++||+||.|.=.++++.|+..+++..|.|+.|.|.++..
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~ 84 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKK 84 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceecccccccc
Confidence 389999999999999999999999999999999654 46799999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC
Q 024276 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
..................... ..........+.+.|+|.|||+.+...+|+.+|+.||.|..+.|+....+
T Consensus 85 R~r~e~~~~~e~~~veK~~~q---------~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg 155 (678)
T KOG0127|consen 85 RARSEEVEKGENKAVEKPIEQ---------KRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG 155 (678)
T ss_pred cccchhcccccchhhhccccc---------CCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC
Confidence 633221110000000000000 00000111234689999999999999999999999999999999977766
Q ss_pred ---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 ---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|||||.|....+|..|++.+||.+|. |+.|.|+++-
T Consensus 156 klcGFaFV~fk~~~dA~~Al~~~N~~~i~----gR~VAVDWAV 194 (678)
T KOG0127|consen 156 KLCGFAFVQFKEKKDAEKALEFFNGNKID----GRPVAVDWAV 194 (678)
T ss_pred CccceEEEEEeeHHHHHHHHHhccCceec----CceeEEeeec
Confidence 69999999999999999999999999 9999988764
No 22
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=4.4e-24 Score=177.22 Aligned_cols=177 Identities=20% Similarity=0.358 Sum_probs=131.9
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEe--cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~--~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
--.|+|.|||+.|.+.+|..+|+.||.|.+|.|. .++..+|||||+|.+..+|..|+..+|+.+|+|++|.|.|+..+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~K 196 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDK 196 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccc
Confidence 5689999999999999999999999999999994 46777899999999999999999999999999999999999765
Q ss_pred CCCCCCC-------------CCCCC---CCCCCCC------CC-C----CC---------C----------C--CC-CCC
Q 024276 84 SGRGPSS-------------SDRRG---GYGGGGA------GG-A----GG---------A----------G--AG-AGA 114 (270)
Q Consensus 84 ~~~~~~~-------------~~~~~---~~~~~~~------~~-~----~~---------~----------~--~~-~~~ 114 (270)
....... ..... ....... .. . .+ . . .+ ...
T Consensus 197 d~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~ 276 (678)
T KOG0127|consen 197 DTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKES 276 (678)
T ss_pred ccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCcc
Confidence 3222100 00000 0000000 00 0 00 0 0 00 000
Q ss_pred CCC------CCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhc
Q 024276 115 GRF------GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 115 ~~~------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l 182 (270)
... ......+.+|||.|||+++++++|.++|.+||.|.++.+..++.+ |.|||.|.+..+|..||...
T Consensus 277 ~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 277 DKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 000 111123479999999999999999999999999999999888766 69999999999999999876
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=8.8e-24 Score=160.39 Aligned_cols=193 Identities=21% Similarity=0.270 Sum_probs=145.4
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCC--ceEEEEec
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~ 80 (270)
...|||.+||+.+|..+|+++|++||.|..-.|.. ++.++|.+||.|...++|+.||..|||..--| .+|.|+++
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFa 206 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFA 206 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEec
Confidence 35799999999999999999999999998877743 57889999999999999999999999988755 57999999
Q ss_pred CCCCCCCCCCCC-C-CCCC-CCCCCCCC------------------------CCCCCCC-CCCCCCCCCCCcceEEEeCC
Q 024276 81 HGGSGRGPSSSD-R-RGGY-GGGGAGGA------------------------GGAGAGA-GAGRFGISRHSEYRVIVRGL 132 (270)
Q Consensus 81 ~~~~~~~~~~~~-~-~~~~-~~~~~~~~------------------------~~~~~~~-~~~~~~~~~~~~~~l~v~nl 132 (270)
............ . -... ...+++.. ...+-.+ .+.........+++|||.||
T Consensus 207 nnPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ciFvYNL 286 (360)
T KOG0145|consen 207 NNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGWCIFVYNL 286 (360)
T ss_pred CCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCeeEEEEEec
Confidence 876432211100 0 0000 00000000 0000000 01111223345799999999
Q ss_pred CCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 133 PSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 133 ~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.++.++..|.++|..||.|..+++++|-.+ ||+||.+.+.++|..|+..|||..+. ++.+.|.+..
T Consensus 287 spd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg----~rvLQVsFKt 356 (360)
T KOG0145|consen 287 SPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLG----DRVLQVSFKT 356 (360)
T ss_pred CCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcccc----ceEEEEEEec
Confidence 999999999999999999999999998764 79999999999999999999999999 8888887754
No 24
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=6.3e-25 Score=174.09 Aligned_cols=169 Identities=20% Similarity=0.332 Sum_probs=141.5
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
|.||||.|.+.+.++.|+..|..||+|+.|.+-. |++.+|||||+|+-+|.|+.|++.|||.+++|+.|+|....+-
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsNm 193 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSNM 193 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCCC
Confidence 7899999999999999999999999999999944 6788999999999999999999999999999999999854322
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC-
Q 024276 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
....+-. +........-+.|||..+.+++.++||+.+|+.||+|..|.+..++.+
T Consensus 194 pQAQpiI------------------------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~ 249 (544)
T KOG0124|consen 194 PQAQPII------------------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGR 249 (544)
T ss_pred cccchHH------------------------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCC
Confidence 1000000 000011123469999999999999999999999999999999988754
Q ss_pred ---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
||+||+|.+.....+|+..||-..++ |.+++|...--
T Consensus 250 ~HkGyGfiEy~n~qs~~eAiasMNlFDLG----GQyLRVGk~vT 289 (544)
T KOG0124|consen 250 GHKGYGFIEYNNLQSQSEAIASMNLFDLG----GQYLRVGKCVT 289 (544)
T ss_pred CccceeeEEeccccchHHHhhhcchhhcc----cceEecccccC
Confidence 69999999999999999999999998 88888766543
No 25
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.91 E-value=4.2e-24 Score=161.56 Aligned_cols=163 Identities=40% Similarity=0.699 Sum_probs=135.4
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||++||..+.+.+|..||..||.|.+|.|+ .||+||+|.++.+|..|+..||+..|.|..+.|+++......
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 479999999999999999999999999999997 679999999999999999999999999999888887754111
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEE
Q 024276 87 GPSSSDRRGGYGGGGAGGAGGAGAGA-GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYG 165 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~a 165 (270)
. +.++++... .......+....+.+.|.+++..+.+.+|.++|..+|.+....+.. +++
T Consensus 77 ~----------------g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~----~~~ 136 (216)
T KOG0106|consen 77 R----------------GRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR----NFA 136 (216)
T ss_pred c----------------CCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc----ccc
Confidence 1 000000111 2334455667789999999999999999999999999996555533 489
Q ss_pred EEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 166 VVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 166 fv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
||+|...++|..|+..|++..+. ++.|.+
T Consensus 137 ~v~Fs~~~da~ra~~~l~~~~~~----~~~l~~ 165 (216)
T KOG0106|consen 137 FVEFSEQEDAKRALEKLDGKKLN----GRRISV 165 (216)
T ss_pred ceeehhhhhhhhcchhccchhhc----Cceeee
Confidence 99999999999999999999999 888888
No 26
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.90 E-value=5.6e-23 Score=147.15 Aligned_cols=78 Identities=27% Similarity=0.398 Sum_probs=72.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+.|||+||+..+++.||+.+|..||+|..|.|...+ .|||||+|+++.+|+.|+..|+|..|. +..|+|+....
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP-PGfAFVEFed~RDA~DAvr~LDG~~~c----G~r~rVE~S~G 84 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP-PGFAFVEFEDPRDAEDAVRYLDGKDIC----GSRIRVELSTG 84 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC-CCceEEeccCcccHHHHHhhcCCcccc----CceEEEEeecC
Confidence 5899999999999999999999999999999999854 469999999999999999999999999 99999999885
Q ss_pred CCC
Q 024276 204 SPS 206 (270)
Q Consensus 204 ~~~ 206 (270)
.+.
T Consensus 85 ~~r 87 (195)
T KOG0107|consen 85 RPR 87 (195)
T ss_pred Ccc
Confidence 544
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.90 E-value=1.1e-22 Score=169.54 Aligned_cols=152 Identities=26% Similarity=0.401 Sum_probs=136.0
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGR 86 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~ 86 (270)
..|||| +++|+.+|+++|+.+|+|..+++..+-.+.|||||.|.++++|.+||..||...|.|++|.|-|+....
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~-- 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP-- 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC--
Confidence 479999 999999999999999999999994322389999999999999999999999999999999999987441
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC--cE
Q 024276 87 GPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TY 164 (270)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~ 164 (270)
..|||.||+++++..+|.++|+.||.|+.|++..+..+ ||
T Consensus 77 --------------------------------------~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~ 118 (369)
T KOG0123|consen 77 --------------------------------------SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY 118 (369)
T ss_pred --------------------------------------ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee
Confidence 22999999999999999999999999999999999876 68
Q ss_pred EEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCCC
Q 024276 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPS 206 (270)
Q Consensus 165 afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~ 206 (270)
||+|+++++|.+|++.+||..+. +..|-|........
T Consensus 119 -FV~f~~e~~a~~ai~~~ng~ll~----~kki~vg~~~~~~e 155 (369)
T KOG0123|consen 119 -FVQFESEESAKKAIEKLNGMLLN----GKKIYVGLFERKEE 155 (369)
T ss_pred -EEEeCCHHHHHHHHHHhcCcccC----CCeeEEeeccchhh
Confidence 99999999999999999999998 88888766654443
No 28
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.90 E-value=9.9e-22 Score=147.18 Aligned_cols=195 Identities=18% Similarity=0.262 Sum_probs=146.8
Q ss_pred CCCCCeEEEcCCCCCccHHHHHH----HhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVED----LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~----~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
-.++.||||.||+..+..++|+. ||++||.|.+|....+.+.+|.|||.|.+.+.|-.|+..|+|+.+.|++|+|+
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriq 85 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQ 85 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhee
Confidence 36777999999999999999888 99999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCC----CCCCCCCCCC-----CCCC-CCC----CCCCCCCCC-CCCCCCcceEEEeCCCCCCCHHHHHH
Q 024276 79 LAHGGSGRGPSSS----DRRGGYGGGG-----AGGA-GGA----GAGAGAGRF-GISRHSEYRVIVRGLPSSASWQDLKD 143 (270)
Q Consensus 79 ~~~~~~~~~~~~~----~~~~~~~~~~-----~~~~-~~~----~~~~~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~ 143 (270)
|++.......... .+........ .... .+. .....+.+. .....+...+++.|+|..++.+.+..
T Consensus 86 yA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~~ 165 (221)
T KOG4206|consen 86 YAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLSD 165 (221)
T ss_pred cccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHHH
Confidence 9987654332211 0000000000 0000 000 000000111 23356678999999999999999999
Q ss_pred HhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 144 HMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 144 ~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
+|..|.....+.++.... +.|||+|.+...|..|...++|..+.. ...+.+.++
T Consensus 166 lf~qf~g~keir~i~~~~-~iAfve~~~d~~a~~a~~~lq~~~it~---~~~m~i~~a 219 (221)
T KOG4206|consen 166 LFEQFPGFKEIRLIPPRS-GIAFVEFLSDRQASAAQQALQGFKITK---KNTMQITFA 219 (221)
T ss_pred HHhhCcccceeEeccCCC-ceeEEecchhhhhHHHhhhhccceecc---CceEEeccc
Confidence 999999888888776543 499999999999999999999988863 444555444
No 29
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.7e-22 Score=172.73 Aligned_cols=166 Identities=23% Similarity=0.430 Sum_probs=139.8
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CC----CCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+|||.||+..+|.++|..+|..+|.|..+.|.. ++ .+.|||||+|.++++|+.|++.|+|..|+|+.|.|.++.
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~ 596 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISE 596 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEecc
Confidence 399999999999999999999999999998843 32 235999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
....... +...........|+|.|+|...+..+++++|..||.+..|.++....
T Consensus 597 ~k~~~~~--------------------------gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~ 650 (725)
T KOG0110|consen 597 NKPASTV--------------------------GKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIG 650 (725)
T ss_pred Ccccccc--------------------------ccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhc
Confidence 3311110 01122223357999999999999999999999999999999987622
Q ss_pred ----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 162 ----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 162 ----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.|||||+|-++.+|..|+.+|.++.+- |+.+.++++..
T Consensus 651 k~a~rGF~Fv~f~t~~ea~nA~~al~STHly----GRrLVLEwA~~ 692 (725)
T KOG0110|consen 651 KGAHRGFGFVDFLTPREAKNAFDALGSTHLY----GRRLVLEWAKS 692 (725)
T ss_pred chhhccceeeeccCcHHHHHHHHhhccccee----chhhheehhcc
Confidence 269999999999999999999999988 89998888763
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=4.7e-21 Score=159.70 Aligned_cols=168 Identities=27% Similarity=0.437 Sum_probs=143.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++...|||.||+++++..+|..+|+.||+|..|++..+ ..++|| ||+|+++++|.+|+..|||..+.|+.|.|.....
T Consensus 74 rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~ 152 (369)
T KOG0123|consen 74 RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFER 152 (369)
T ss_pred cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccc
Confidence 45556999999999999999999999999999999664 348999 9999999999999999999999999999998877
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC
Q 024276 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
...+...... ....-..++|.|++..++++.|...|..+|.|..+.++.+..+
T Consensus 153 ~~er~~~~~~---------------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g 205 (369)
T KOG0123|consen 153 KEEREAPLGE---------------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG 205 (369)
T ss_pred hhhhcccccc---------------------------hhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC
Confidence 6443322211 1223468999999999999999999999999999999987654
Q ss_pred ---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+|+||.|+++++|..|++.|++..+. +..+-|..+.+
T Consensus 206 ~~~~~gfv~f~~~e~a~~av~~l~~~~~~----~~~~~V~~aqk 245 (369)
T KOG0123|consen 206 KSKGFGFVNFENPEDAKKAVETLNGKIFG----DKELYVGRAQK 245 (369)
T ss_pred CCCCccceeecChhHHHHHHHhccCCcCC----ccceeeccccc
Confidence 69999999999999999999999987 66676666654
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=2.9e-21 Score=161.06 Aligned_cols=189 Identities=23% Similarity=0.353 Sum_probs=135.7
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..|||+||.+++++++|+.+|+.||.|..|.+.. +|.++||+||+|.+.++|.+|+..|||+.|.|+.|+|......
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 3499999999999999999999999999999954 6899999999999999999999999999999999999887655
Q ss_pred CCCCCC---CCCCC----CCCCCCCCCCC-------CCCC----------------CCCC---C----CCCCCCC-----
Q 024276 84 SGRGPS---SSDRR----GGYGGGGAGGA-------GGAG----------------AGAG---A----GRFGISR----- 121 (270)
Q Consensus 84 ~~~~~~---~~~~~----~~~~~~~~~~~-------~~~~----------------~~~~---~----~~~~~~~----- 121 (270)
...... ..... .+..-+..+.. .+.+ .... . -....+.
T Consensus 359 ~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~p~ 438 (549)
T KOG0147|consen 359 VDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADASPA 438 (549)
T ss_pred cccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccccc
Confidence 333322 11111 11100111100 0000 0000 0 0011122
Q ss_pred --CCcceEEEeCCCCCCC----------HHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccC
Q 024276 122 --HSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 122 --~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
.++.++.+.|+-...+ .+++.+.|.+||+|++|.+.++.. |+.||.|.+.+.|..|+.+|||.+|.
T Consensus 439 ~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~-g~VYvrc~s~~~A~~a~~alhgrWF~- 516 (549)
T KOG0147|consen 439 FDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSA-GCVYVRCPSAEAAGTAVKALHGRWFA- 516 (549)
T ss_pred cCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCC-ceEEEecCcHHHHHHHHHHHhhhhhc-
Confidence 4566777777643332 257889999999998887766655 79999999999999999999999999
Q ss_pred cccccceeeec
Q 024276 190 PWARGRITVKR 200 (270)
Q Consensus 190 ~~~~~~i~v~~ 200 (270)
++-|...+
T Consensus 517 ---gr~Ita~~ 524 (549)
T KOG0147|consen 517 ---GRMITAKY 524 (549)
T ss_pred ---cceeEEEE
Confidence 77776544
No 32
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.86 E-value=7.9e-20 Score=159.55 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||+|||+++++++|+++|+.||.|..+.|.. ++.++|||||+|.+.++|.+||..||++.|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 457999999999999999999999999999999965 35789999999999999999999999999999999999987
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 54
No 33
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=3.7e-20 Score=141.34 Aligned_cols=193 Identities=21% Similarity=0.291 Sum_probs=142.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccc---CCceEEEEe
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~ 79 (270)
+.++||||.|.+.-+|||++.+|..||.|.+|.+.. ++.++|+|||.|.+.-+|..||..|+|..- ....|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 568999999999999999999999999999999955 688999999999999999999999999443 345688888
Q ss_pred cCCCCCCC------------------------------------------------C----------------------C
Q 024276 80 AHGGSGRG------------------------------------------------P----------------------S 89 (270)
Q Consensus 80 ~~~~~~~~------------------------------------------------~----------------------~ 89 (270)
+....++. + .
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 86443200 0 0
Q ss_pred C--CCC---------------------CCCCCCCCCCCCCC-----------CCCCCC----------------------
Q 024276 90 S--SDR---------------------RGGYGGGGAGGAGG-----------AGAGAG---------------------- 113 (270)
Q Consensus 90 ~--~~~---------------------~~~~~~~~~~~~~~-----------~~~~~~---------------------- 113 (270)
+ ... ..++........+. ......
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence 0 000 00000000000000 000000
Q ss_pred CCC-----------------CCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCc----EEEEEecCh
Q 024276 114 AGR-----------------FGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNP 172 (270)
Q Consensus 114 ~~~-----------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g----~afv~f~~~ 172 (270)
+.. ....-.++|.|||..||....+.+|.++|-.||.|+..++..|..++ |+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 000 00111568999999999999999999999999999999999988764 999999999
Q ss_pred hhHHHHHHhcCCccccCcccccceeeecC
Q 024276 173 EDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 173 ~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..|+.||..|||..|+ -++++|...
T Consensus 338 ~SaQaAIqAMNGFQIG----MKRLKVQLK 362 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIG----MKRLKVQLK 362 (371)
T ss_pred hhHHHHHHHhcchhhh----hhhhhhhhc
Confidence 9999999999999999 777777665
No 34
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.1e-20 Score=153.09 Aligned_cols=81 Identities=26% Similarity=0.340 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCccc---CCceEEEEe
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~ 79 (270)
+.++|||+.|++.+||++|+++|+.||.|++|.|..+ +.++|||||.|.+.+.|..||+.||+..- ...+|.|.+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkF 202 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKF 202 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEe
Confidence 4689999999999999999999999999999999764 68899999999999999999999999443 467899999
Q ss_pred cCCCCC
Q 024276 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 203 ADtqkd 208 (510)
T KOG0144|consen 203 ADTQKD 208 (510)
T ss_pred cccCCC
Confidence 976543
No 35
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.85 E-value=3.9e-20 Score=134.80 Aligned_cols=81 Identities=25% Similarity=0.484 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..+++|||+|||.++|+++|+++|.+||+|.+|.|+. ++.+++||||+|.+.++|+.||..||+..|+|++|+|.++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999964 4678999999999999999999999999999999999998
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7653
No 36
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.85 E-value=5.3e-22 Score=165.41 Aligned_cols=172 Identities=22% Similarity=0.300 Sum_probs=141.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.+|||+--|+..+++-+|+++|+.+|+|.+|.++.+ +.++|.|||+|.+.+++..||. |.|..+.|.+|.|+..
T Consensus 177 Rd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~s 255 (549)
T KOG0147|consen 177 RDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQLS 255 (549)
T ss_pred HhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEeccc
Confidence 56788999999999999999999999999999999654 6789999999999999999998 9999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
..............+. ..-..+...|||+||..++++++|+.+|+.||.|..|.++.+.
T Consensus 256 Eaeknr~a~~s~a~~~---------------------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~ 314 (549)
T KOG0147|consen 256 EAEKNRAANASPALQG---------------------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS 314 (549)
T ss_pred HHHHHHHHhccccccc---------------------cccccchhhhhhcccccCchHHHHhhhccCcccceeeeecccc
Confidence 6543322111111000 0001122349999999999999999999999999999999886
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 161 ~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+ ||+||+|.+.++|..|+++|||.++. |+.|+|...
T Consensus 315 ~tG~skgfGfi~f~~~~~ar~a~e~lngfelA----Gr~ikV~~v 355 (549)
T KOG0147|consen 315 ETGRSKGFGFITFVNKEDARKALEQLNGFELA----GRLIKVSVV 355 (549)
T ss_pred ccccccCcceEEEecHHHHHHHHHHhccceec----CceEEEEEe
Confidence 33 69999999999999999999998888 888886543
No 37
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.85 E-value=1.4e-19 Score=129.78 Aligned_cols=78 Identities=45% Similarity=0.715 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.-.+.|||+||+..+++.+|..+|..||+|..|-|.. .+.|||||||+++.+|+.|+..|+|..|+|..|.|+++...
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 3578999999999999999999999999999988754 45899999999999999999999999999999999998865
No 38
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.84 E-value=1.6e-19 Score=145.36 Aligned_cols=192 Identities=16% Similarity=0.182 Sum_probs=154.1
Q ss_pred CCeEEEcCCCCC-ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 6 SRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 s~~l~V~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++.|.|.||... +|++-|..+|.-||.|..|+|.... +..|+|+|.+...|+.|+..|+|..|.|++|+|.+++...
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~ 374 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTN 374 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccCcc
Confidence 689999999776 9999999999999999999997654 3689999999999999999999999999999999999876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcE
Q 024276 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY 164 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~ 164 (270)
...+.......++........-.....++...+..-.++..+|+..|+|.++++++|+.+|..-|-.........+...+
T Consensus 375 vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~km 454 (492)
T KOG1190|consen 375 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKM 454 (492)
T ss_pred ccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcce
Confidence 66555544444433333332222233333444445556778999999999999999999999999887766655555569
Q ss_pred EEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 165 GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 165 afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|++.+++.|+|..|+..+|...++ ....++|.+.+
T Consensus 455 al~q~~sveeA~~ali~~hnh~lg---en~hlRvSFSk 489 (492)
T KOG1190|consen 455 ALPQLESVEEAIQALIDLHNHYLG---ENHHLRVSFSK 489 (492)
T ss_pred eecccCChhHhhhhccccccccCC---CCceEEEEeec
Confidence 999999999999999999999888 24578888764
No 39
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.84 E-value=6.9e-20 Score=134.74 Aligned_cols=79 Identities=34% Similarity=0.537 Sum_probs=74.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
...+|.|.||...+|.++|+.+|++||.|.+|+|. .|..++|||||.|.+..+|+.|++.|+|.+|+|+.|.|+++.
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 45789999999999999999999999999999994 467899999999999999999999999999999999999988
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 92 yg 93 (256)
T KOG4207|consen 92 YG 93 (256)
T ss_pred cC
Confidence 65
No 40
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.84 E-value=1.4e-20 Score=151.50 Aligned_cols=167 Identities=18% Similarity=0.313 Sum_probs=136.7
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEE
Q 024276 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 1 m~~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
|+..+.++|||++|+.++++|.|++.|.+||+|.++.++. ++.+++|+||+|++++.+.++|. ...+.|+|+.|.+
T Consensus 1 ~~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 1 SESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 3456899999999999999999999999999999999966 47889999999999999999999 6678999999999
Q ss_pred EecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEe
Q 024276 78 ELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVS 157 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~ 157 (270)
..+.+........ .......|||++||..++++++++.|++||.|..+.++
T Consensus 80 k~av~r~~~~~~~-----------------------------~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~ 130 (311)
T KOG4205|consen 80 KRAVSREDQTKVG-----------------------------RHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIM 130 (311)
T ss_pred eeccCcccccccc-----------------------------cccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEe
Confidence 9888763222111 01135799999999999999999999999999999998
Q ss_pred eCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 158 RDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 158 ~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+... +|+||.|++.+.+.+++. ..-..|. +..+.|..+.
T Consensus 131 ~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~----gk~vevkrA~ 174 (311)
T KOG4205|consen 131 YDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFN----GKKVEVKRAI 174 (311)
T ss_pred ecccccccccceeeEeccccccceecc-cceeeec----CceeeEeecc
Confidence 88655 699999999999888875 3444444 5555555544
No 41
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.84 E-value=2e-20 Score=143.02 Aligned_cols=139 Identities=27% Similarity=0.417 Sum_probs=116.3
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 1 m~~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|.+++-+||||+||...+||+-|..||++.|.|..++|+.+ .|+|.++
T Consensus 1 ~~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa 48 (321)
T KOG0148|consen 1 NGSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWA 48 (321)
T ss_pred CCCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhccccc
Confidence 45688899999999999999999999999999999999754 3445554
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
....... ......-..+||+.|...++.++|++.|.+||+|.++++++|.
T Consensus 49 ~~p~nQs------------------------------k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~ 98 (321)
T KOG0148|consen 49 TAPGNQS------------------------------KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM 98 (321)
T ss_pred cCcccCC------------------------------CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecc
Confidence 4331100 0011113579999999999999999999999999999999997
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCC
Q 024276 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+ ||+||-|.+.++|+.||.+|||..|+ ++.|+...+.+.+
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG----~R~IRTNWATRKp 143 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLG----RRTIRTNWATRKP 143 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeec----cceeeccccccCc
Confidence 76 69999999999999999999999999 9999999988777
No 42
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.82 E-value=4.7e-19 Score=131.88 Aligned_cols=184 Identities=18% Similarity=0.260 Sum_probs=129.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCC----CCcEEEEEECCHHHHHHHHHhcCCcccC---CceEEE
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPR----PPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRV 77 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~----~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v 77 (270)
.-+||||.+||.++..-+|+.||..|---+...++.+++ .+.+|||.|.+.++|..|+..|||+.|+ +..|+|
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhi 112 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHI 112 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEe
Confidence 368999999999999999999999987677777766543 3589999999999999999999999995 889999
Q ss_pred EecCCCCCCCCCCCCCCC---------CCCCCCC----------CCCC----CCCCCCC---------------------
Q 024276 78 ELAHGGSGRGPSSSDRRG---------GYGGGGA----------GGAG----GAGAGAG--------------------- 113 (270)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~---------~~~~~~~----------~~~~----~~~~~~~--------------------- 113 (270)
++++...+.......... ....... ...+ ..+....
T Consensus 113 ElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P~ 192 (284)
T KOG1457|consen 113 ELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAPS 192 (284)
T ss_pred eehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCCc
Confidence 999865443221110000 0000000 0000 0000000
Q ss_pred -------CCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc
Q 024276 114 -------AGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 114 -------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
............+|||.||...+++++|+++|+.|.....++|-.....-.||++|++.+.|..|+..|+|..
T Consensus 193 a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lqg~~ 272 (284)
T KOG1457|consen 193 ANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQGNL 272 (284)
T ss_pred ccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhhcce
Confidence 0000011123458999999999999999999999987766665443322389999999999999999999988
Q ss_pred cc
Q 024276 187 FR 188 (270)
Q Consensus 187 ~~ 188 (270)
|.
T Consensus 273 ~s 274 (284)
T KOG1457|consen 273 LS 274 (284)
T ss_pred ec
Confidence 86
No 43
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.81 E-value=3.3e-19 Score=131.19 Aligned_cols=79 Identities=19% Similarity=0.220 Sum_probs=72.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.......|.|.||.+.++.++|..+|++||.|.+|.|+.+..+ |||||.|....+|+.|+++|+|..++ |+.
T Consensus 9 dv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ld----gRe 84 (256)
T KOG4207|consen 9 DVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLD----GRE 84 (256)
T ss_pred CcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeec----cce
Confidence 3445689999999999999999999999999999999999765 69999999999999999999999999 999
Q ss_pred eeeecCC
Q 024276 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|+|..++
T Consensus 85 lrVq~ar 91 (256)
T KOG4207|consen 85 LRVQMAR 91 (256)
T ss_pred eeehhhh
Confidence 9888776
No 44
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=99.80 E-value=2.1e-20 Score=149.63 Aligned_cols=182 Identities=17% Similarity=0.142 Sum_probs=121.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.-..|.|.||.+++|.++|+.||..+|+|.++.|+.+ +.....|||.|.+.+.+..|.. |.++.|-|+.|.|.
T Consensus 6 ~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv~ 84 (479)
T KOG4676|consen 6 SLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIVR 84 (479)
T ss_pred CCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEEE
Confidence 3458999999999999999999999999999999663 2345799999999999999999 66666666766666
Q ss_pred ecCCCCCCCC----CCCCCCCCCCCCCC-CCCCCCCC----CCCCC-----CCCC-------CCCCcceEEEeCCCCCCC
Q 024276 79 LAHGGSGRGP----SSSDRRGGYGGGGA-GGAGGAGA----GAGAG-----RFGI-------SRHSEYRVIVRGLPSSAS 137 (270)
Q Consensus 79 ~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~----~~~~~-----~~~~-------~~~~~~~l~v~nl~~~~~ 137 (270)
+......... .........+...+ +...+... +.... +..+ ......+++|.+|+..+.
T Consensus 85 p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~ 164 (479)
T KOG4676|consen 85 PYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAI 164 (479)
T ss_pred ecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhc
Confidence 5543311110 00000000000000 00000000 00000 0000 001125799999999999
Q ss_pred HHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024276 138 WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..++.+.|..+|.|...++.......+|.++|........|+. ++|..+.
T Consensus 165 l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 165 LPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred chhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 9999999999999999888777666688899998888888877 5555543
No 45
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.79 E-value=1.2e-17 Score=135.88 Aligned_cols=184 Identities=28% Similarity=0.432 Sum_probs=133.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhh-cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~-~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.+||+|||+++.+.+|+.||. +.|+|..|.+..+ ++++|+|.|||.++|.+++|++.||.+.|.|++|.|+...
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 346799999999999999999998 5799999999764 7899999999999999999999999999999999998876
Q ss_pred CCCCCCCCCCCCC--CCCCC------CCCCCCCCC-CCCC---------------------CCC----------------
Q 024276 82 GGSGRGPSSSDRR--GGYGG------GGAGGAGGA-GAGA---------------------GAG---------------- 115 (270)
Q Consensus 82 ~~~~~~~~~~~~~--~~~~~------~~~~~~~~~-~~~~---------------------~~~---------------- 115 (270)
..+...-..--+. ..+.+ +......+. +.+. ...
T Consensus 123 d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~ 202 (608)
T KOG4212|consen 123 DEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSAS 202 (608)
T ss_pred chhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhh
Confidence 5321110000000 00000 000000000 0000 000
Q ss_pred ----CCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 116 ----RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 116 ----~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
......+....+||.||.+.+....|.+.|...|.|..+.+-.++.+ |+|.++|..+-+|.+||.++++..+.
T Consensus 203 Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 203 FLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 00011233458999999999999999999999999999988777654 69999999999999999999976544
No 46
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.79 E-value=2.8e-19 Score=121.50 Aligned_cols=80 Identities=38% Similarity=0.562 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.++||||+||+.-++||+|.+||+.||+|..|-| ..+..+.|||||+|...++|..|+..+|+..++.++|.|.+.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 46899999999999999999999999999999988 335677999999999999999999999999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 114 ~GF 116 (153)
T KOG0121|consen 114 AGF 116 (153)
T ss_pred ccc
Confidence 755
No 47
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.78 E-value=1.5e-17 Score=128.99 Aligned_cols=87 Identities=32% Similarity=0.528 Sum_probs=79.9
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
++|-+||||+-|+.++++..|+..|+.||+|+.|.|+. +++++|||||+|.++-+...|.+..+|.+|+|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 47889999999999999999999999999999999954 689999999999999999999999999999999999999
Q ss_pred cCCCCCCCCC
Q 024276 80 AHGGSGRGPS 89 (270)
Q Consensus 80 ~~~~~~~~~~ 89 (270)
-.......+.
T Consensus 178 ERgRTvkgW~ 187 (335)
T KOG0113|consen 178 ERGRTVKGWL 187 (335)
T ss_pred cccccccccc
Confidence 8877555443
No 48
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.75 E-value=4.6e-17 Score=128.82 Aligned_cols=195 Identities=19% Similarity=0.189 Sum_probs=138.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEE--------EEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCce
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~--------~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
-++.|||.|||.++|.+++.++|++||-|.. |+|.. .|..+|-|+|.|-..+++..|+..|++..|.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 4677999999999999999999999997743 55533 4788999999999999999999999999999999
Q ss_pred EEEEecCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCC-CCCCCCCCcceEEEeCCCCC----CC-------HHH
Q 024276 75 LRVELAHGGSGRGPSSSDRRG--GYGGGGAGGAGGAGAGAGAG-RFGISRHSEYRVIVRGLPSS----AS-------WQD 140 (270)
Q Consensus 75 l~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~v~nl~~~----~~-------~~~ 140 (270)
|+|+.|+-............. +.....-........+-.+. ..........+|.+.|+-.. .+ +++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 999998744221111100000 00000000000000000000 01122334578889887522 12 457
Q ss_pred HHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 141 LKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 141 l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
|.+.+.+||.|..|.+....+.|.+.|.|.+.++|..|++.|+|..|. ++.|.......
T Consensus 293 l~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fd----gRql~A~i~DG 351 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFD----GRQLTASIWDG 351 (382)
T ss_pred HHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeec----ceEEEEEEeCC
Confidence 888999999999999998888899999999999999999999999999 88887666553
No 49
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.75 E-value=5.7e-18 Score=108.85 Aligned_cols=68 Identities=40% Similarity=0.764 Sum_probs=64.0
Q ss_pred EEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEE
Q 024276 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|||+|||+++|+++|+++|++||.|..+.+.. ++..+++|||+|.+.++|+.|+..|||..|+|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 79999999999999999999999999999965 467789999999999999999999999999999885
No 50
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.74 E-value=8.4e-17 Score=133.00 Aligned_cols=167 Identities=23% Similarity=0.270 Sum_probs=127.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec-CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.....|.+.+||.++|++||.++|+.| .|.++.+.. ++++.|-|||+|.++|++++|++ .+...+..+.|.|..+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCceEEEEccCC
Confidence 345678889999999999999999998 578877755 58999999999999999999999 888999999999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeE-EEEeeCC-
Q 024276 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDS- 160 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~- 160 (270)
.....-. +.... ........|.+.+||+.++++||.++|+-.-.|.. +.++.+.
T Consensus 86 ~e~d~~~---~~~g~---------------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r 141 (510)
T KOG4211|consen 86 AEADWVM---RPGGP---------------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR 141 (510)
T ss_pred ccccccc---cCCCC---------------------CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC
Confidence 5331110 00000 00023468999999999999999999998876665 4344443
Q ss_pred --CCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 161 --EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 161 --~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+|-|||.|++.+.|++|+.. |...|. .++|.|-.+
T Consensus 142 gR~tGEAfVqF~sqe~ae~Al~r-hre~iG----hRYIEvF~S 179 (510)
T KOG4211|consen 142 GRPTGEAFVQFESQESAEIALGR-HRENIG----HRYIEVFRS 179 (510)
T ss_pred CCcccceEEEecCHHHHHHHHHH-HHHhhc----cceEEeehh
Confidence 447999999999999999984 445555 666665443
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.74 E-value=1.4e-17 Score=129.67 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=73.1
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++|||+|||+.+|+++|+++|+.||+|.+|.|..++..+|||||+|.++++|..||. |||..|.|+.|.|.++...
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~ 80 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDY 80 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCC
Confidence 6899999999999999999999999999999998877778999999999999999997 9999999999999998765
No 52
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.74 E-value=3.9e-17 Score=140.28 Aligned_cols=191 Identities=21% Similarity=0.258 Sum_probs=138.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
..+.|+|+|||..+..++|..+|..||+|..+.|... ...|+|+|.++.+|.+|+..|....+...+|.+.++....
T Consensus 384 s~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp~~---G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP~dv 460 (725)
T KOG0110|consen 384 SDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLPPG---GTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAPEDV 460 (725)
T ss_pred hcceeeeccCccccccHHHHHHhhcccccceeecCcc---cceeeeeecCccchHHHHHHhchhhhccCccccccChhhh
Confidence 4578999999999999999999999999999955422 2359999999999999999999999999999988876432
Q ss_pred CCCC--CCCCCCCCCCC-CCCC-------CCCCC--CC--CCCCCCCCCCC-CCcceEEEeCCCCCCCHHHHHHHhhhcC
Q 024276 85 GRGP--SSSDRRGGYGG-GGAG-------GAGGA--GA--GAGAGRFGISR-HSEYRVIVRGLPSSASWQDLKDHMRKAG 149 (270)
Q Consensus 85 ~~~~--~~~~~~~~~~~-~~~~-------~~~~~--~~--~~~~~~~~~~~-~~~~~l~v~nl~~~~~~~~l~~~f~~~g 149 (270)
-... ........... ...+ ..... .. ........... ...+.|||.||++.++.++|..+|..+|
T Consensus 461 f~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~k~G 540 (725)
T KOG0110|consen 461 FTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFSKQG 540 (725)
T ss_pred ccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHHhcC
Confidence 2211 00000000000 0000 00000 00 00000000111 1223399999999999999999999999
Q ss_pred ceeEEEEeeCCCC-------cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 150 DVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 150 ~v~~~~~~~~~~~-------g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.|..+.|....+. |||||+|.++++|+.|+..|+|+.+. |..|.++.+.
T Consensus 541 ~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvld----GH~l~lk~S~ 596 (725)
T KOG0110|consen 541 TVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLD----GHKLELKISE 596 (725)
T ss_pred eEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceec----CceEEEEecc
Confidence 9999988766654 79999999999999999999999999 9999998887
No 53
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.73 E-value=3.2e-17 Score=143.15 Aligned_cols=136 Identities=21% Similarity=0.309 Sum_probs=101.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++|||+||+..+|+++|+++|+.| |+|+.|.+. ++||||+|.+.++|.+|++.||+..|+|+.|.|.++++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp 306 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKP 306 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccC
Confidence 45789999999999999999999999 999999876 57999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCcee
Q 024276 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~ 152 (270)
....... .+..+. ++.+...................++++.|+++..+++.+.++|..+|.|.
T Consensus 307 ~~~~~~~------~~~rg~-gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 307 VDKKSYV------RYTRGT-GGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred CCccccc------cccccc-CCCcccccccccccCcccCccccccccccccccccccchhhccccCcccc
Confidence 5322110 000000 00000000000111112234568999999999999999999999998764
No 54
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.72 E-value=1.7e-16 Score=131.88 Aligned_cols=80 Identities=29% Similarity=0.473 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCC--ceEEEEe
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
..++|||+|||..+|+++|+++|++||+|+.|.|+. ++.+++||||+|.+.++|++||+.||+..|.+ ++|.|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 467899999999999999999999999999999854 56788999999999999999999999998865 7899999
Q ss_pred cCCCC
Q 024276 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 272 a~~~~ 276 (346)
T TIGR01659 272 AEEHG 276 (346)
T ss_pred CCccc
Confidence 88653
No 55
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.72 E-value=9.6e-17 Score=122.93 Aligned_cols=80 Identities=24% Similarity=0.239 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
....+|||+||++.+|+++|+++|+.||+|.+|.|..++...+||||+|.++++|..|+. |||..|.+++|.|..+...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~~~~y 81 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITRWGQY 81 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEeCccc
Confidence 456899999999999999999999999999999999888888999999999999999997 9999999999999998765
Q ss_pred C
Q 024276 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 82 ~ 82 (243)
T PLN03121 82 E 82 (243)
T ss_pred c
Confidence 3
No 56
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.71 E-value=7.7e-17 Score=105.54 Aligned_cols=80 Identities=34% Similarity=0.445 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.++-|||.|||+.+|.|++.+||..||.|..|.|-.+...+|.|||-|++..+|.+|+..|+|..+.++.|.|-+..+.
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHH
Confidence 56789999999999999999999999999999999777777999999999999999999999999999999999998754
No 57
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.69 E-value=1.4e-16 Score=120.38 Aligned_cols=80 Identities=36% Similarity=0.540 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++++|.|.||+.++++++|.+||..||.|..|+| ..||.++|||||.|...++|.+||..|||+=++.-.|.|+++
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 68899999999999999999999999999999999 457899999999999999999999999999999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 865
No 58
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=3.1e-15 Score=119.40 Aligned_cols=78 Identities=24% Similarity=0.451 Sum_probs=71.3
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..|||..+.++.+++||+..|+.||+|+.|.+.. ....+||+||+|.+.++-..|+..||-+.++|+.|+|..+...
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 5799999999999999999999999999999944 3567999999999999999999999999999999999887654
Q ss_pred C
Q 024276 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 291 P 291 (544)
T KOG0124|consen 291 P 291 (544)
T ss_pred C
Confidence 3
No 59
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.67 E-value=2.7e-16 Score=100.97 Aligned_cols=68 Identities=29% Similarity=0.605 Sum_probs=61.1
Q ss_pred EEEcCCCCCccHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEE
Q 024276 9 IYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 9 l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|||+|||+.+++++|.++|+.||.|..+.+... +..+++|||+|.++++|..|+..+++..|+|+.|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 799999999999999999999999999999654 55689999999999999999999999999999874
No 60
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.66 E-value=9.8e-18 Score=121.03 Aligned_cols=83 Identities=27% Similarity=0.451 Sum_probs=77.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++..|||||||...|+.||.-+|++||+|++|.++. ||+++||||+.|+++.+...||..|||+.|.|+.|+|.+.
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv 112 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHV 112 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeec
Confidence 3678999999999999999999999999999999954 7899999999999999999999999999999999999998
Q ss_pred CCCCCC
Q 024276 81 HGGSGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 113 ~~Yk~p 118 (219)
T KOG0126|consen 113 SNYKKP 118 (219)
T ss_pred ccccCC
Confidence 877443
No 61
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.66 E-value=6.6e-15 Score=107.36 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=73.4
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|++||.|..+.++.+..+ +||||+|++.++|+.|++.||+..|. ++.
T Consensus 30 ~~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~----Gr~ 105 (144)
T PLN03134 30 LRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELN----GRH 105 (144)
T ss_pred ccCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 3445679999999999999999999999999999999987643 69999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024276 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|+|+.+...+
T Consensus 106 l~V~~a~~~~ 115 (144)
T PLN03134 106 IRVNPANDRP 115 (144)
T ss_pred EEEEeCCcCC
Confidence 9999886543
No 62
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.63 E-value=1e-15 Score=129.64 Aligned_cols=182 Identities=19% Similarity=0.288 Sum_probs=131.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.-+.|||++||...++.++.++...||++....+.. ++.++||||.+|.++.....|+..|||+.++++.|.|+.+-
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 457899999999999999999999999999988854 46889999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCC--CCCC--------HHHHHHHhhhcCc
Q 024276 82 GGSGRGPSSSDRRG-GYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLP--SSAS--------WQDLKDHMRKAGD 150 (270)
Q Consensus 82 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~--~~~~--------~~~l~~~f~~~g~ 150 (270)
........+..... ...+.. .-.......++..|.+.|+= ..+. -++++..|.+||.
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~------------~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~ 435 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIP------------LLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGA 435 (500)
T ss_pred ccchhccccCCccccccccch------------hhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCc
Confidence 54322222111000 000000 00001111223344444431 1111 1357888999999
Q ss_pred eeEEEEeeC-CC------CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 151 VCFAEVSRD-SE------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 151 v~~~~~~~~-~~------~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|..|++..+ .. .|..||+|.+.+++++|+++|+|.+|. ++.+...++.
T Consensus 436 v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~----nRtVvtsYyd 490 (500)
T KOG0120|consen 436 VRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFA----NRTVVASYYD 490 (500)
T ss_pred eeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeC----CcEEEEEecC
Confidence 999999887 22 268999999999999999999999999 7777665554
No 63
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.63 E-value=8.5e-15 Score=119.89 Aligned_cols=145 Identities=27% Similarity=0.454 Sum_probs=109.6
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++|||+|||..+|+++|.++|..||.|..+.+.. ++.++|||||+|.++++|..|+..+++..|.|++|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 58999999999999999999999999999998854 478899999999999999999999999999999999999764
Q ss_pred -CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC
Q 024276 83 -GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 83 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
................ ................+++.+++..++..++...|..+|.+....+.....
T Consensus 195 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (306)
T COG0724 195 ASQPRSELSNNLDASFA------------KKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKD 262 (306)
T ss_pred ccccccccccccchhhh------------ccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCC
Confidence 1000000000000000 000111122334567899999999999999999999999997766665544
Q ss_pred C
Q 024276 162 G 162 (270)
Q Consensus 162 ~ 162 (270)
.
T Consensus 263 ~ 263 (306)
T COG0724 263 G 263 (306)
T ss_pred C
Confidence 3
No 64
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.63 E-value=5.4e-14 Score=112.66 Aligned_cols=189 Identities=14% Similarity=0.096 Sum_probs=137.6
Q ss_pred CCCCeEEEcCCCCC-ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
-+.+.++|-+|... ++.+.|..||..||.|..|+++++. .|.|.||+.++.+++.|+..||+..+.|.+|.|.+++.
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~SkQ 362 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSKQ 362 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcHHHHHHHHHHhccCccccceEEEeeccc
Confidence 46889999999876 7889999999999999999998774 68999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCc-eeEEEEee
Q 024276 83 GSGRGPSSSDR---RGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSR 158 (270)
Q Consensus 83 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~ 158 (270)
.-....+.... ...+..- .+........+..........+.+.|..-|.|..+|++.|.++|...+. ...+++..
T Consensus 363 ~~v~~~~pflLpDgSpSfKdy-s~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svkvFp 441 (494)
T KOG1456|consen 363 NFVSPVQPFLLPDGSPSFKDY-SGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVKVFP 441 (494)
T ss_pred cccccCCceecCCCCcchhhc-ccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEEeec
Confidence 43222111111 1111110 0111111111112222334456789999999999999999999988764 44566655
Q ss_pred CCCC--cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 159 DSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 159 ~~~~--g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.+.. -.+++||++.++|.+|+..+|...+.+....-.
T Consensus 442 ~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~P 480 (494)
T KOG1456|consen 442 LKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFP 480 (494)
T ss_pred ccccccccceeeeehHHHHHHHHHHhccccccCCCCCCC
Confidence 5433 389999999999999999999999884443333
No 65
>PLN03213 repressor of silencing 3; Provisional
Probab=99.62 E-value=1.8e-15 Score=125.20 Aligned_cols=78 Identities=18% Similarity=0.330 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCH--HHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA--RDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~--~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
....+||||||++.+++++|..+|..||.|..|.|+.... +|||||+|.+. .++.+||..|||..|.|+.|+|..++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeecc
Confidence 3467999999999999999999999999999999975433 99999999987 78999999999999999999999997
Q ss_pred C
Q 024276 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 87 P 87 (759)
T PLN03213 87 E 87 (759)
T ss_pred H
Confidence 4
No 66
>smart00362 RRM_2 RNA recognition motif.
Probab=99.62 E-value=4.6e-15 Score=95.38 Aligned_cols=71 Identities=41% Similarity=0.739 Sum_probs=65.4
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+|+|+|||..+++++|.++|..||+|..+.+..+ +.+.++|||+|.+.++|..|+..+++..|.|+.|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 5899999999999999999999999999988654 5667999999999999999999999999999998873
No 67
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.61 E-value=1.7e-15 Score=114.19 Aligned_cols=75 Identities=25% Similarity=0.401 Sum_probs=68.5
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++||||||+..++.|.|+++|++||+|++..|+. +++++||+||+|.+.++|.+|++. .+-.|+|++..|..+.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 6899999999999999999999999999998854 689999999999999999999994 45789999999988764
No 68
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.4e-15 Score=118.41 Aligned_cols=80 Identities=26% Similarity=0.470 Sum_probs=74.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+--+.|+|.|||+..-+-||+.+|.+||+|.+|.|+.+ ..+|||+||+|++++||++|-..|||..|.|++|.|..+..
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATa 173 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATA 173 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccch
Confidence 34578999999999999999999999999999999764 57899999999999999999999999999999999998875
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 174 r 174 (376)
T KOG0125|consen 174 R 174 (376)
T ss_pred h
Confidence 5
No 69
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.60 E-value=7.9e-14 Score=112.94 Aligned_cols=189 Identities=17% Similarity=0.226 Sum_probs=132.5
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc--CCceEEEEecCCCCC
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVELAHGGSG 85 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~~~~~~~ 85 (270)
.++|+|+-..+|-+-|.++|+.||.|..|.-. ++...-.|+|+|.+++.|..|...|+|..| +-+.|+|.+++-...
T Consensus 152 r~iie~m~ypVslDVLHqvFS~fG~VlKIiTF-~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~L 230 (492)
T KOG1190|consen 152 RTIIENMFYPVSLDVLHQVFSKFGFVLKIITF-TKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDL 230 (492)
T ss_pred EEEeccceeeeEHHHHHHHHhhcceeEEEEEE-ecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccc
Confidence 56889999999999999999999999887542 222244689999999999999999999887 457888888864321
Q ss_pred CCCCCCC--CCCCCCCCCCC---------------C---CCCC-----CCC-CC--C-CCCCCCCCCcceEEEeCCC-CC
Q 024276 86 RGPSSSD--RRGGYGGGGAG---------------G---AGGA-----GAG-AG--A-GRFGISRHSEYRVIVRGLP-SS 135 (270)
Q Consensus 86 ~~~~~~~--~~~~~~~~~~~---------------~---~~~~-----~~~-~~--~-~~~~~~~~~~~~l~v~nl~-~~ 135 (270)
.-.-..+ +.........+ . -++. ... .. . +....+. ....|.|.||. +.
T Consensus 231 nvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~-~n~vllvsnln~~~ 309 (492)
T KOG1190|consen 231 NVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS-ANVVLLVSNLNEEA 309 (492)
T ss_pred eeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCC-CceEEEEecCchhc
Confidence 1100000 00000000000 0 0000 000 00 0 1111111 25778888775 77
Q ss_pred CCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
+|.+.|..+|.-||.|..|+|..++. --|+|+|.+...|+-|+++|+|..+. ++.|+|..++.
T Consensus 310 VT~d~LftlFgvYGdVqRVkil~nkk-d~ALIQmsd~~qAqLA~~hL~g~~l~----gk~lrvt~SKH 372 (492)
T KOG1190|consen 310 VTPDVLFTLFGVYGDVQRVKILYNKK-DNALIQMSDGQQAQLAMEHLEGHKLY----GKKLRVTLSKH 372 (492)
T ss_pred cchhHHHHHHhhhcceEEEEeeecCC-cceeeeecchhHHHHHHHHhhcceec----CceEEEeeccC
Confidence 89999999999999999999988775 38999999999999999999999998 89999988873
No 70
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=2.2e-15 Score=103.58 Aligned_cols=79 Identities=25% Similarity=0.396 Sum_probs=73.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.-.|||+++...+|+++|...|..||+|++|.+. .+|-.+|||+|+|++.++|++|+..|||..|.|++|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 45579999999999999999999999999999994 467889999999999999999999999999999999999997
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 151 v~ 152 (170)
T KOG0130|consen 151 VK 152 (170)
T ss_pred ec
Confidence 65
No 71
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5.2e-14 Score=109.60 Aligned_cols=77 Identities=23% Similarity=0.292 Sum_probs=69.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+-++|||.-|++++++..|+..|+.||+|..|.|+.+..+ |||||+|+...+...|.++.+|.+|+ ++.|-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Id----grri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKID----GRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceec----CcEEE
Confidence 44589999999999999999999999999999999988544 69999999999999999999999998 88887
Q ss_pred eecCC
Q 024276 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|+...
T Consensus 175 VDvER 179 (335)
T KOG0113|consen 175 VDVER 179 (335)
T ss_pred EEecc
Confidence 76654
No 72
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.58 E-value=5.1e-13 Score=107.12 Aligned_cols=192 Identities=17% Similarity=0.181 Sum_probs=137.9
Q ss_pred CCCCeEEEcCCCCC--ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc--CCceEEEEe
Q 024276 4 RFSRTIYVGNLPSD--IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~--~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~ 79 (270)
.+++.|.++=|.+. +|.+-|+++...+|+|..|.|..- .--.|.|||++.+.|++|...|||..| +-+.|+|++
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 56777887766654 899999999999999999998542 134799999999999999999999888 568999999
Q ss_pred cCCCCCC-----CCCCC----CC-------CC--------CCCCCC----CCCCCCCCCC-------CC-----------
Q 024276 80 AHGGSGR-----GPSSS----DR-------RG--------GYGGGG----AGGAGGAGAG-------AG----------- 113 (270)
Q Consensus 80 ~~~~~~~-----~~~~~----~~-------~~--------~~~~~~----~~~~~~~~~~-------~~----------- 113 (270)
+++.... ...|. .. .+ .+.+.. .++..+...+ .-
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 9865321 11110 00 00 000000 0000000000 00
Q ss_pred -CCCCCCCCCCcceEEEeCCC-CCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcc
Q 024276 114 -AGRFGISRHSEYRVIVRGLP-SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 114 -~~~~~~~~~~~~~l~v~nl~-~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
+........+++.+.|.+|. ..++-+.|..+|..||.|..|++++.+. |.|.|++.+..+.+.|+..||+..+.
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~-gtamVemgd~~aver~v~hLnn~~lf--- 351 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP-GTAMVEMGDAYAVERAVTHLNNIPLF--- 351 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc-ceeEEEcCcHHHHHHHHHHhccCccc---
Confidence 00011223456789999987 5567888999999999999999999876 48999999999999999999999988
Q ss_pred cccceeeecCC
Q 024276 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|.+|.+..++
T Consensus 352 -G~kl~v~~Sk 361 (494)
T KOG1456|consen 352 -GGKLNVCVSK 361 (494)
T ss_pred -cceEEEeecc
Confidence 8999888876
No 73
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=4.4e-15 Score=118.03 Aligned_cols=81 Identities=25% Similarity=0.392 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
-|.+.|||..|.|.+|++||.-||+.||+|..|.++. +|.+..||||+|.+.++|++|.-.|+++.|+++.|+|.++
T Consensus 237 PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFS 316 (479)
T KOG0415|consen 237 PPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFS 316 (479)
T ss_pred CCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehh
Confidence 4788999999999999999999999999999999954 6888999999999999999999999999999999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
+.-.
T Consensus 317 QSVs 320 (479)
T KOG0415|consen 317 QSVS 320 (479)
T ss_pred hhhh
Confidence 8653
No 74
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.55 E-value=5.9e-13 Score=108.85 Aligned_cols=74 Identities=28% Similarity=0.561 Sum_probs=65.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...++|+|.|||.+.||+.|++-|..||.|.++.|+..... .+.|.|.++++|+.|+..|+|..+. ++.|.|.+
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~Gks-kGVVrF~s~edAEra~a~Mngs~l~----Gr~I~V~y 607 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKS-KGVVRFFSPEDAERACALMNGSRLD----GRNIKVTY 607 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCc-cceEEecCHHHHHHHHHHhccCccc----Cceeeeee
Confidence 45678999999999999999999999999999998544322 5689999999999999999999999 99998865
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.54 E-value=4.6e-14 Score=86.12 Aligned_cols=56 Identities=34% Similarity=0.584 Sum_probs=51.1
Q ss_pred HHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 23 VEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 23 L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
|+++|++||+|..|.+..+. .++|||+|.+.++|..|+..|||..|+|++|+|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 78999999999999997654 599999999999999999999999999999999985
No 76
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.53 E-value=1e-13 Score=89.47 Aligned_cols=72 Identities=38% Similarity=0.741 Sum_probs=66.1
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEecCC--CCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+|+|+|||..+++++|.++|..||.|..+.+..+. .+.++|||+|.+.++|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999999999999999996543 4589999999999999999999999999999998864
No 77
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.53 E-value=5.6e-14 Score=90.07 Aligned_cols=66 Identities=24% Similarity=0.460 Sum_probs=59.9
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 127 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
|||+|||..+++++|.++|+.||.|..+.+..+.. .++|||+|.+.++|..|++.|+|..+. +..|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~----~~~i 69 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKIN----GRKI 69 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEEC----ccCc
Confidence 79999999999999999999999999999988622 259999999999999999999999988 6655
No 78
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=5.8e-14 Score=89.84 Aligned_cols=68 Identities=41% Similarity=0.732 Sum_probs=62.3
Q ss_pred EcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 11 VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 11 V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
|+|||..+++++|+++|..||.|..+.+.. ++.++++|||+|.+.++|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999855 35678999999999999999999999999999998873
No 79
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.7e-14 Score=107.52 Aligned_cols=81 Identities=33% Similarity=0.523 Sum_probs=75.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.-++|||++|...+++.-|...|-.||.|.+|.+.. +.+.+|||||+|...|+|..||..||+..|.|+.|+|.+++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 468999999999999999999999999999999954 47889999999999999999999999999999999999998
Q ss_pred CCCC
Q 024276 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
+...
T Consensus 89 P~ki 92 (298)
T KOG0111|consen 89 PEKI 92 (298)
T ss_pred Cccc
Confidence 7643
No 80
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=7.8e-14 Score=109.98 Aligned_cols=77 Identities=26% Similarity=0.331 Sum_probs=71.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC--cEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
....+|+|.|+|....+.||+.+|++||+|.+|+|+.+..+ ||+||+|++++||++|.++|||..+. |++|.|.
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VE----GRkIEVn 169 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVE----GRKIEVN 169 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceee----ceEEEEe
Confidence 44579999999999999999999999999999999988765 79999999999999999999999999 9999988
Q ss_pred cCC
Q 024276 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
.+.
T Consensus 170 ~AT 172 (376)
T KOG0125|consen 170 NAT 172 (376)
T ss_pred ccc
Confidence 765
No 81
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=1.4e-13 Score=94.85 Aligned_cols=78 Identities=19% Similarity=0.335 Sum_probs=72.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...++.|||+++...+++++|.+.|..||+|..+++..+..+ |||+|+|++.++|+.|+..+||..+. +..|
T Consensus 69 SVEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll----~q~v 144 (170)
T KOG0130|consen 69 SVEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL----GQNV 144 (170)
T ss_pred ceeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh----CCce
Confidence 456799999999999999999999999999999999999877 49999999999999999999999999 8999
Q ss_pred eeecCC
Q 024276 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|.+.-
T Consensus 145 ~VDw~F 150 (170)
T KOG0130|consen 145 SVDWCF 150 (170)
T ss_pred eEEEEE
Confidence 888765
No 82
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.49 E-value=2.6e-13 Score=98.60 Aligned_cols=79 Identities=20% Similarity=0.323 Sum_probs=71.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..+.|||+|||.++.+.+|+++|-+||.|..|++..... ..||||+|+++.+|+.||..-+|..++ +..++|++.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdyd----g~rLRVEfp 80 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYD----GCRLRVEFP 80 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccC----cceEEEEec
Confidence 347999999999999999999999999999999876554 359999999999999999999999999 999999999
Q ss_pred CCCC
Q 024276 202 DRSP 205 (270)
Q Consensus 202 ~~~~ 205 (270)
+.-.
T Consensus 81 rggr 84 (241)
T KOG0105|consen 81 RGGR 84 (241)
T ss_pred cCCC
Confidence 8544
No 83
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.48 E-value=1.5e-13 Score=115.95 Aligned_cols=79 Identities=32% Similarity=0.579 Sum_probs=74.4
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.|||||||+++++++|..+|+..|.|..++++. +|.++||||++|.++++|..|+..|||..+.|++|+|.++...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999954 5899999999999999999999999999999999999999765
Q ss_pred CC
Q 024276 84 SG 85 (270)
Q Consensus 84 ~~ 85 (270)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 84
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=1.6e-13 Score=112.38 Aligned_cols=78 Identities=27% Similarity=0.493 Sum_probs=71.5
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSG 85 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~ 85 (270)
-+.|||.||+.++|+|.|+++|++||.|..|+.. +.||||.|.+-++|.+|++.+|+..|+|..|.|.++++..+
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k 333 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDK 333 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhh
Confidence 3679999999999999999999999999999887 45999999999999999999999999999999999998755
Q ss_pred CCC
Q 024276 86 RGP 88 (270)
Q Consensus 86 ~~~ 88 (270)
...
T Consensus 334 ~k~ 336 (506)
T KOG0117|consen 334 KKK 336 (506)
T ss_pred hcc
Confidence 443
No 85
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.46 E-value=4.5e-13 Score=104.64 Aligned_cols=74 Identities=19% Similarity=0.342 Sum_probs=68.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+|||+|||+.+++++|+++|+.||.|..+.|+.+.. .|||||+|+++++|..|+. |+|..|. ++.|.|....
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~----gr~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIV----DQSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeC----CceEEEEecc
Confidence 36999999999999999999999999999999988864 5799999999999999995 9999999 9999998875
No 86
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.46 E-value=1.1e-13 Score=107.33 Aligned_cols=93 Identities=33% Similarity=0.588 Sum_probs=81.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..+++|+|+||.+.++.++|+..|++||+|+++.|. ++|+||.|...++|..|+..||+..|.|++|+|+.+...
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 478899999999999999999999999999999998 679999999999999999999999999999999999887
Q ss_pred CCCCCCCCCCCCCCCCCC
Q 024276 84 SGRGPSSSDRRGGYGGGG 101 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~ 101 (270)
-..++...+..+++..+.
T Consensus 151 lrtapgmgDq~~cyrcGk 168 (346)
T KOG0109|consen 151 LRTAPGMGDQSGCYRCGK 168 (346)
T ss_pred cccCCCCCCHHHheeccc
Confidence 655555555555555443
No 87
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.44 E-value=1.1e-13 Score=111.16 Aligned_cols=188 Identities=19% Similarity=0.190 Sum_probs=125.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcc----cceEEEEE-e-cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKY----GRILDIEL-K-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~----G~v~~~~~-~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+--.|-+.+||+++++.|+.++|..- |.++.|.+ . .+++..|-|||.|..+++|+.||. -|...|+-+.|.+.
T Consensus 160 ~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYIElF 238 (508)
T KOG1365|consen 160 NQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYIELF 238 (508)
T ss_pred cceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHHHHH
Confidence 34457788999999999999999732 23344444 3 378999999999999999999998 56666776666665
Q ss_pred ecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCc-eeE--EE
Q 024276 79 LAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCF--AE 155 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~--~~ 155 (270)
.+...+...--..........+. .....+........+.....+|.+.+||+..+.++|.++|..|.. |.. ++
T Consensus 239 RSTaaEvqqvlnr~~s~pLi~~~----~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVH 314 (508)
T KOG1365|consen 239 RSTAAEVQQVLNREVSEPLIPGL----TSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVH 314 (508)
T ss_pred HHhHHHHHHHHHhhccccccCCC----CCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeE
Confidence 44321100000000000000000 001111123333444555789999999999999999999999874 333 56
Q ss_pred EeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 156 VSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 156 ~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
+..+.. .|-|||+|.+.++|..|..+.+++... .++|.|-..
T Consensus 315 mv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk----~RYiEvfp~ 359 (508)
T KOG1365|consen 315 MVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMK----SRYIEVFPC 359 (508)
T ss_pred EEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcc----cceEEEeec
Confidence 655543 479999999999999999998888776 777776554
No 88
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=1.5e-12 Score=85.57 Aligned_cols=80 Identities=19% Similarity=0.229 Sum_probs=71.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC-cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+.+.+..|||.|||..+|.+++-++|.+||.|..+.+-....+ |.|||.|++..+|.+|+++|+|..+. ++++.
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~----~ryl~ 88 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVD----NRYLV 88 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccC----CceEE
Confidence 45566789999999999999999999999999999999777665 79999999999999999999999998 88888
Q ss_pred eecCC
Q 024276 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|-...
T Consensus 89 vlyyq 93 (124)
T KOG0114|consen 89 VLYYQ 93 (124)
T ss_pred EEecC
Confidence 76654
No 89
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.40 E-value=1.5e-12 Score=83.42 Aligned_cols=66 Identities=23% Similarity=0.454 Sum_probs=58.6
Q ss_pred EEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 127 VIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 127 l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
|||+|||..+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|++.++|..+. |+.|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~----g~~l 69 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEID----GRKL 69 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEEC----CEEc
Confidence 79999999999999999999999999999998865 369999999999999999999999988 6655
No 90
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.39 E-value=2.2e-12 Score=109.64 Aligned_cols=179 Identities=22% Similarity=0.346 Sum_probs=134.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcc-----------c-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----------G-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~-----------G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
...+.++|+++|+.++++.+..+|..- | .|..+.+... +.||||+|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~---~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE---KNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc---ccceeEEecCCCchhhhhc-ccchhhC
Confidence 567889999999999999999999853 2 3666666433 7899999999999999999 9999999
Q ss_pred CceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCce
Q 024276 72 GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV 151 (270)
Q Consensus 72 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v 151 (270)
|.++++.--............... .+.-...............++|++||..+++.++.++...||++
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~------------~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~l 316 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQ------------LGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPL 316 (500)
T ss_pred CCCceecccccccCCccchhhhcc------------ccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccc
Confidence 999988765544221111100000 00000001112233456799999999999999999999999999
Q ss_pred eEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 152 CFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 152 ~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
....+..+... ||||.+|.++.....|+..|||+.+. +..+.|..+-
T Consensus 317 k~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lg----d~~lvvq~A~ 367 (500)
T KOG0120|consen 317 KAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLG----DKKLVVQRAI 367 (500)
T ss_pred hhheeecccccccccceeeeeeeCCcchhhhhcccchhhhc----CceeEeehhh
Confidence 99888777653 59999999999999999999999998 7777665543
No 91
>PLN03213 repressor of silencing 3; Provisional
Probab=99.38 E-value=2.9e-12 Score=106.54 Aligned_cols=76 Identities=18% Similarity=0.337 Sum_probs=70.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecCh--hhHHHHHHhcCCccccCcccccceeeec
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNP--EDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~--~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+.+|||+||++.+++++|..+|..||.|..++|++....|||||+|.+. .++.+||..|||..+. |+.|+|..
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWK----GR~LKVNK 84 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWK----GGRLRLEK 84 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeec----CceeEEee
Confidence 34799999999999999999999999999999999777678999999987 6899999999999888 99999988
Q ss_pred CC
Q 024276 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
++
T Consensus 85 AK 86 (759)
T PLN03213 85 AK 86 (759)
T ss_pred cc
Confidence 86
No 92
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=5.3e-13 Score=99.59 Aligned_cols=140 Identities=20% Similarity=0.311 Sum_probs=110.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+..+||||+|+-..++++.|.+||-+.|+|..|.|.. +++.+ ||||.|.++-++..|+..+||..+.+.+|.|++--
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 5678999999999999999999999999999999954 45556 99999999999999999999999999999988643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.... .-|...++++.+...|+..|++..+.+..+.+
T Consensus 86 G~sh--------------------------------------------apld~r~~~ei~~~v~s~a~p~~~~R~~~~~d 121 (267)
T KOG4454|consen 86 GNSH--------------------------------------------APLDERVTEEILYEVFSQAGPIEGVRIPTDND 121 (267)
T ss_pred CCCc--------------------------------------------chhhhhcchhhheeeecccCCCCCcccccccc
Confidence 2200 01445567777788888888888888776655
Q ss_pred C---cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 162 G---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 162 ~---g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
+ .+.|+.+--.-....++..+.+..+.
T Consensus 122 ~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 122 GRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred CCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 3 37888776666666777776666554
No 93
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=1.8e-12 Score=88.57 Aligned_cols=78 Identities=18% Similarity=0.223 Sum_probs=70.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...++|||+||...+++++|-++|+++|+|..|.+-.+..+ |||||+|.+.++|..|+.-++|..+. .+.|+
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLd----dr~ir 109 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLD----DRPIR 109 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCccc----cccee
Confidence 34689999999999999999999999999998887766654 69999999999999999999999999 89999
Q ss_pred eecCCC
Q 024276 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
++.+..
T Consensus 110 ~D~D~G 115 (153)
T KOG0121|consen 110 IDWDAG 115 (153)
T ss_pred eecccc
Confidence 988763
No 94
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=2.6e-12 Score=81.99 Aligned_cols=58 Identities=26% Similarity=0.438 Sum_probs=51.4
Q ss_pred HHHHHHHhh----cccceEEEE-Eec---C--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEE
Q 024276 20 EYEVEDLFY----KYGRILDIE-LKI---P--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 20 ~~~L~~~F~----~~G~v~~~~-~~~---~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+++|+++|. .||.|..|. +.. + +.++|||||+|.+.++|.+|+..|||..|+|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578899998 999999985 422 3 678999999999999999999999999999999976
No 95
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=1.3e-11 Score=93.77 Aligned_cols=80 Identities=23% Similarity=0.306 Sum_probs=72.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.....++|.|.||+.++++++|+++|..||.|..+.+..++.+ |||||.|.+.++|++||..|||.-+. .-.
T Consensus 185 ~R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd----~LI 260 (270)
T KOG0122|consen 185 ERDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYD----NLI 260 (270)
T ss_pred cCCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccc----eEE
Confidence 4456789999999999999999999999999999999999877 49999999999999999999999888 777
Q ss_pred eeeecCCC
Q 024276 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|+|+.++.
T Consensus 261 LrvEwskP 268 (270)
T KOG0122|consen 261 LRVEWSKP 268 (270)
T ss_pred EEEEecCC
Confidence 88887753
No 96
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=7.8e-13 Score=101.60 Aligned_cols=81 Identities=25% Similarity=0.554 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+-+.|.|||-.||.+..+.+|.+.|-.||.|+..++.. |..++.|+||.|.|+.+|+.||..|||+.|+-+.|+|+.
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 45789999999999999999999999999999988844 578899999999999999999999999999999999999
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
.+++
T Consensus 362 KRPk 365 (371)
T KOG0146|consen 362 KRPK 365 (371)
T ss_pred cCcc
Confidence 8776
No 97
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=5.3e-12 Score=97.06 Aligned_cols=75 Identities=20% Similarity=0.335 Sum_probs=68.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC-cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+++|||+||++.+++++|+++|+.||+|.+++|+.+... ++|||+|+++++|..|+ .|+|..|. +..|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~----d~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIV----DQRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeC----CceEEEEeC
Confidence 3489999999999999999999999999999999988654 59999999999999999 59999998 888888776
Q ss_pred C
Q 024276 202 D 202 (270)
Q Consensus 202 ~ 202 (270)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 5
No 98
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=3.4e-11 Score=100.85 Aligned_cols=165 Identities=22% Similarity=0.355 Sum_probs=111.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEe--cC----CCCCc---EEEEEECCHHHHHHHHHhcCCcccCCce
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--IP----PRPPC---YCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~--~~----~~~~g---~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.-++.||||+||.+++|++|...|..||.+. |.+. .. -.++| |+|+.|+++.++...|..+.- ....
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~ 332 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGN 332 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccc
Confidence 4578999999999999999999999999754 3331 11 12355 999999999999987775532 2222
Q ss_pred EEEEecCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhh-hcC
Q 024276 75 LRVELAHGGSGRGP----SSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMR-KAG 149 (270)
Q Consensus 75 l~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~g 149 (270)
+.+..+........ .+..-...+ -.....+-.+..||||++||..++.++|..+|+ .||
T Consensus 333 ~yf~vss~~~k~k~VQIrPW~laDs~f----------------v~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyG 396 (520)
T KOG0129|consen 333 YYFKVSSPTIKDKEVQIRPWVLADSDF----------------VLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFG 396 (520)
T ss_pred eEEEEecCcccccceeEEeeEeccchh----------------hhccCcccCccceEEecCCCCcchHHHHHHHHHHhcC
Confidence 22222222211110 000000000 000123345568999999999999999999998 699
Q ss_pred ceeEEEEeeCCC----CcEEEEEecChhhHHHHHHh----cCCcccc
Q 024276 150 DVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRK----LDDTEFR 188 (270)
Q Consensus 150 ~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~----l~g~~~~ 188 (270)
.|+.+-|-.|+. .|-|-|.|.+...=.+||.+ |+...|.
T Consensus 397 gV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsarFvql~h~d~~ 443 (520)
T KOG0129|consen 397 GVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISARFVQLDHTDID 443 (520)
T ss_pred ceEEEEeccCcccCCCCCcceeeecccHHHHHHHhhheEEEeccccc
Confidence 999999988843 36899999999888888864 4555544
No 99
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.35 E-value=2.8e-12 Score=111.74 Aligned_cols=76 Identities=28% Similarity=0.518 Sum_probs=72.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++|||||+|+.++++.||..+|+.||+|..|.++.. +++|||.+.+-++|.+|+.+|++..+.++.|+|.|+..+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~---R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP---RGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccC---CceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccC
Confidence 5899999999999999999999999999999999765 899999999999999999999999999999999999876
No 100
>smart00362 RRM_2 RNA recognition motif.
Probab=99.31 E-value=1.8e-11 Score=78.31 Aligned_cols=69 Identities=25% Similarity=0.442 Sum_probs=61.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC--CCcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS--EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~--~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+|+|.|||..+++++|+++|..||.|..+.+..+. ..++|||+|.+.++|..|+..++|..+. +..+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~----~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLG----GRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEEC----CEEEee
Confidence 58999999999999999999999999999888765 3369999999999999999999998887 666654
No 101
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.29 E-value=2.6e-12 Score=113.61 Aligned_cols=158 Identities=21% Similarity=0.365 Sum_probs=132.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.|||++||+..+++.+|+..|..+|.|..|.|... +....||||.|.+.+.+-.|+..+.+..|..-.+.+.+..
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46889999999999999999999999999999999553 3446799999999999999999999988865555555543
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.. ...+..++|++|+..+....|..+|..||.|..|.+-...
T Consensus 450 ~k-------------------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq- 491 (975)
T KOG0112|consen 450 PK-------------------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQ- 491 (975)
T ss_pred cc-------------------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCC-
Confidence 21 2244789999999999999999999999999887776544
Q ss_pred CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 162 ~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
-||+|.|++...|+.|...|-|..|+.. ...++|.++.
T Consensus 492 -~yayi~yes~~~aq~a~~~~rgap~G~P--~~r~rvdla~ 529 (975)
T KOG0112|consen 492 -PYAYIQYESPPAAQAATHDMRGAPLGGP--PRRLRVDLAS 529 (975)
T ss_pred -cceeeecccCccchhhHHHHhcCcCCCC--Cccccccccc
Confidence 3999999999999999999999999854 3447776665
No 102
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=99.25 E-value=2.5e-10 Score=88.98 Aligned_cols=79 Identities=25% Similarity=0.469 Sum_probs=72.1
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..+|+|.|||..++++||++||..||.+..+.++. .+.+.|.|-|.|...++|..|++.+|++.++|.+|++......
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISSP 162 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecCc
Confidence 47899999999999999999999999888888855 5788999999999999999999999999999999999888765
Q ss_pred C
Q 024276 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 163 ~ 163 (243)
T KOG0533|consen 163 S 163 (243)
T ss_pred c
Confidence 3
No 103
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=99.25 E-value=6.2e-11 Score=99.69 Aligned_cols=80 Identities=34% Similarity=0.556 Sum_probs=68.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEE--ec-CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~--~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
...+|||.|||.++++++|+++|..||+|+...| +. .+....||||+|.+.+++..||. .+.+.|+++.|.|+..+
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~-Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIE-ASPLEIGGRKLNVEEKR 365 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhh-cCccccCCeeEEEEecc
Confidence 3456999999999999999999999999999877 22 24444999999999999999999 67999999999999887
Q ss_pred CCCC
Q 024276 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 366 ~~~~ 369 (419)
T KOG0116|consen 366 PGFR 369 (419)
T ss_pred cccc
Confidence 6533
No 104
>smart00360 RRM RNA recognition motif.
Probab=99.20 E-value=1.1e-10 Score=74.33 Aligned_cols=66 Identities=23% Similarity=0.439 Sum_probs=58.9
Q ss_pred EeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 129 VRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 129 v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
|.|||..+++++|+++|..||.|..+.+..+.. .++|||+|.+.++|..|+..+++..+. +..+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~----~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELD----GRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeC----CcEEEe
Confidence 578999999999999999999999999888765 469999999999999999999998887 666654
No 105
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.20 E-value=7.1e-11 Score=87.78 Aligned_cols=79 Identities=24% Similarity=0.377 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcc-cceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKY-GRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~-G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
....++|..||.-+-+.+|..+|.+| |.|..+.+ ..||.++|||||+|++++.|.-|-+.||+..+.++.|.|.+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45578999999999999999999998 78888887 568999999999999999999999999999999999999987
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 654
No 106
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.19 E-value=2.2e-10 Score=73.61 Aligned_cols=70 Identities=24% Similarity=0.451 Sum_probs=63.0
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
+|+|.|||..+++++|.++|..+|.|..+.+..+.. .++|||+|.+.++|..|+..+++..+. +..+.|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~----~~~~~v~ 73 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELG----GRPLRVE 73 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEe
Confidence 489999999999999999999999999999988764 479999999999999999999999877 7777654
No 107
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.17 E-value=1.2e-10 Score=70.95 Aligned_cols=56 Identities=21% Similarity=0.345 Sum_probs=49.6
Q ss_pred HHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 141 LKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 141 l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
|.++|++||.|..+.+.... +++|||+|.+.++|..|++.|||..+. ++.|.|.++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-~~~a~V~f~~~~~A~~a~~~l~~~~~~----g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-RGFAFVEFASVEDAQKAIEQLNGRQFN----GRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-TTEEEEEESSHHHHHHHHHHHTTSEET----TEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 67899999999999988776 579999999999999999999999998 889988753
No 108
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=7e-11 Score=94.43 Aligned_cols=81 Identities=23% Similarity=0.290 Sum_probs=74.2
Q ss_pred CCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCc----EEEEEecChhhHHHHHHhcCCccccCcccc
Q 024276 118 GISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT----YGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 118 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g----~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
+...++.+.|||..|.+-+++++|.-+|+.||+|..|.++.+..+| ||||+|++.+++++|.-+|++..|. .
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLID----D 308 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLID----D 308 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeec----c
Confidence 3445778999999999999999999999999999999999999886 9999999999999999999999998 8
Q ss_pred cceeeecCC
Q 024276 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|.++.
T Consensus 309 rRIHVDFSQ 317 (479)
T KOG0415|consen 309 RRIHVDFSQ 317 (479)
T ss_pred ceEEeehhh
Confidence 888877654
No 109
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.16 E-value=5.5e-11 Score=86.50 Aligned_cols=77 Identities=23% Similarity=0.352 Sum_probs=70.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC----CCcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+||+..++++.|.++|-+.|+|+.++++++. ..||||++|.+.++|+-|++-||...+- |+.|+
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLY----grpIr 82 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLY----GRPIR 82 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhc----CceeE
Confidence 345799999999999999999999999999999998875 3479999999999999999999988888 89999
Q ss_pred eecCC
Q 024276 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..+.
T Consensus 83 v~kas 87 (203)
T KOG0131|consen 83 VNKAS 87 (203)
T ss_pred EEecc
Confidence 88775
No 110
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=4e-12 Score=92.27 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=69.7
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.-|||+|||+.+|+.||.-+|++||.|++|.++++..+ ||||+-|++.....-|+..|||..|. ++.|+|+.
T Consensus 36 A~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~----gRtirVDH 111 (219)
T KOG0126|consen 36 AYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKIL----GRTIRVDH 111 (219)
T ss_pred eEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceec----ceeEEeee
Confidence 68999999999999999999999999999999999877 49999999999999999999999999 99999877
Q ss_pred CC
Q 024276 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 112 v~ 113 (219)
T KOG0126|consen 112 VS 113 (219)
T ss_pred cc
Confidence 54
No 111
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.15 E-value=6.2e-10 Score=92.85 Aligned_cols=175 Identities=26% Similarity=0.339 Sum_probs=113.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEE-EEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
....|.+.+||+.||++||.++|+..-.|.. |.+.. .+.+.|-|||+|++++.|+.|+. -|...|+.+.|.|..+.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIEvF~Ss 180 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIEVFRSS 180 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEEeehhH
Confidence 5568999999999999999999997754444 33333 35688999999999999999999 67788899999998774
Q ss_pred CCCCCC-----------CCCCCCCCC------CCCCCC-------------CCCC------------CCCCCC-------
Q 024276 82 GGSGRG-----------PSSSDRRGG------YGGGGA-------------GGAG------------GAGAGA------- 112 (270)
Q Consensus 82 ~~~~~~-----------~~~~~~~~~------~~~~~~-------------~~~~------------~~~~~~------- 112 (270)
...... +........ +..... +..+ .+....
T Consensus 181 ~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~ 260 (510)
T KOG4211|consen 181 RAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYP 260 (510)
T ss_pred HHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccC
Confidence 211000 000000000 000000 0000 000000
Q ss_pred ---------CCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHH
Q 024276 113 ---------GAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIR 180 (270)
Q Consensus 113 ---------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~ 180 (270)
..+....-...+..++..+||+..++.++..+|+..-.+ .++|...+. +|-|+|+|.+.++|..|+.
T Consensus 261 ~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Ams 339 (510)
T KOG4211|consen 261 VSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMG 339 (510)
T ss_pred CCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhc
Confidence 000000011223678889999999999999999887555 566655543 4699999999999999986
Q ss_pred h
Q 024276 181 K 181 (270)
Q Consensus 181 ~ 181 (270)
+
T Consensus 340 k 340 (510)
T KOG4211|consen 340 K 340 (510)
T ss_pred c
Confidence 4
No 112
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.6e-10 Score=91.09 Aligned_cols=76 Identities=28% Similarity=0.507 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHh-cCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRG-RDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~-l~~~~~~g~~l~v~~~~~ 82 (270)
....+|||++|-..+++.+|+..|.+||+|..|.+... +++|||+|.+-++|+.|... +|.+.|+|..|.|.|..+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 35689999999999999999999999999999999655 67999999999999997654 577888999999999887
No 113
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.09 E-value=2.5e-10 Score=96.64 Aligned_cols=82 Identities=26% Similarity=0.368 Sum_probs=75.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+||+|+|+++++++|..+|+..|.|..++++.|..+ ||+|++|.+.++|..|++.|||.++. ++.|+|.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~----gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFN----GRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccC----CceEEeec
Confidence 79999999999999999999999999999999999876 59999999999999999999999999 99999999
Q ss_pred CCCCCCCCCC
Q 024276 201 YDRSPSRSRS 210 (270)
Q Consensus 201 ~~~~~~r~r~ 210 (270)
+.....+.+.
T Consensus 95 ~~~~~~~~~~ 104 (435)
T KOG0108|consen 95 ASNRKNAERS 104 (435)
T ss_pred ccccchhHHH
Confidence 9876665544
No 114
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.08 E-value=4.8e-10 Score=95.02 Aligned_cols=81 Identities=27% Similarity=0.546 Sum_probs=73.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.|||.+|...+-..||+.||++||+|+..+++.+ +..+.|+||++.+.++|.++|..|+...|+|+.|.|+.++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 4678999999999999999999999999999999653 4568899999999999999999999999999999999998
Q ss_pred CCCC
Q 024276 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
+.+.
T Consensus 484 NEp~ 487 (940)
T KOG4661|consen 484 NEPG 487 (940)
T ss_pred cCcc
Confidence 6543
No 115
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.08 E-value=1.6e-10 Score=97.71 Aligned_cols=166 Identities=18% Similarity=0.137 Sum_probs=102.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
-++.+|+|-|||..+++++|..+|+.||+|..|.. +....+.+||+|.|..+|+.|++.|++..|.|+.|+.......
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~~~ 150 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGARR 150 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcccc
Confidence 36789999999999999999999999999999654 4445899999999999999999999999999999981111110
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCc
Q 024276 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT 163 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g 163 (270)
... ...+.......++........+.+ ...+++- |++.....-++..+..+|.+.. ....... -
T Consensus 151 ~~~----------~~~~~~~~~~~~~p~a~s~pgg~~---~~~~~g~-l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~-h 214 (549)
T KOG4660|consen 151 AMG----------LQSGTSFLNHFGSPLANSPPGGWP---RGQLFGM-LSPTRSSILLEHISSVDGSSPG-RETPLLN-H 214 (549)
T ss_pred cch----------hcccchhhhhccchhhcCCCCCCc---CCcceee-eccchhhhhhhcchhccCcccc-ccccchh-h
Confidence 000 000000000000000000000111 1122222 7887777777777777877655 2111111 1
Q ss_pred EEEEEecChhhHHHHHHhcCCcccc
Q 024276 164 YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 164 ~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.-|++|.+..++..+...+ |..+.
T Consensus 215 q~~~~~~~~~s~a~~~~~~-G~~~s 238 (549)
T KOG4660|consen 215 QRFVEFADNRSYAFSEPRG-GFLIS 238 (549)
T ss_pred hhhhhhccccchhhcccCC-ceecC
Confidence 5678888888875555433 44443
No 116
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.04 E-value=2.4e-10 Score=85.65 Aligned_cols=79 Identities=22% Similarity=0.311 Sum_probs=72.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
..++|||++|...+++.-|...|-.||.|.++.++.+-.. ||+||+|+-.|+|..|+..||+.++. |+.|+|
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~----GrtirV 84 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELF----GRTIRV 84 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhc----ceeEEE
Confidence 3479999999999999999999999999999999877543 69999999999999999999999999 999999
Q ss_pred ecCCCCC
Q 024276 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
.++...+
T Consensus 85 N~AkP~k 91 (298)
T KOG0111|consen 85 NLAKPEK 91 (298)
T ss_pred eecCCcc
Confidence 9987544
No 117
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=99.04 E-value=5.8e-11 Score=96.98 Aligned_cols=140 Identities=24% Similarity=0.382 Sum_probs=113.5
Q ss_pred CeEEEcCCCCCccHHHHHHHhhccc--ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC-cccCCceEEEEecCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G--~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~~~~ 83 (270)
..+||+||.+.+++.+|..+|...- --..+. +. .|||||.+.+...|.+|++.++| ..+.|+++.|.++.++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-~k----~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-VK----SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-ee----cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 3799999999999999999998542 112222 22 58999999999999999999988 5678999999988765
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEE-eeCCCC
Q 024276 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV-SRDSEG 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~-~~~~~~ 162 (270)
..+ .+.+-|.|+|+...++.|..+...||.|..+.. +.+..+
T Consensus 77 kqr-------------------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et 119 (584)
T KOG2193|consen 77 KQR-------------------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET 119 (584)
T ss_pred HHH-------------------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH
Confidence 221 246889999999999999999999999988764 344443
Q ss_pred cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 163 TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 163 g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...-|+|...+.+..|+.+++|..+.
T Consensus 120 avvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 120 AVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 45567788899999999999999887
No 118
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.02 E-value=5.1e-10 Score=90.82 Aligned_cols=82 Identities=24% Similarity=0.493 Sum_probs=73.7
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+..|||++||.++++++|++.|.+||.|..+.++.+ ..+++|+||.|.+++++.+++. ..-+.|+|+.+.|..+.+
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEeeccc
Confidence 569999999999999999999999999999888664 5779999999999999999999 888999999999999988
Q ss_pred CCCCCC
Q 024276 83 GSGRGP 88 (270)
Q Consensus 83 ~~~~~~ 88 (270)
+.....
T Consensus 176 k~~~~~ 181 (311)
T KOG4205|consen 176 KEVMQS 181 (311)
T ss_pred hhhccc
Confidence 755443
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.01 E-value=2e-11 Score=107.64 Aligned_cols=133 Identities=25% Similarity=0.292 Sum_probs=113.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++.+++||.||++.+.+++|...|..+|.|..+.+. ..+..+|+|||+|..+++|.+||.... ..+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh--------
Confidence 456789999999999999999999999987777663 357889999999999999999999444 44444
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
+ ..++|.|+|...|.++++.+|..+|.+.++.++...
T Consensus 736 --K-----------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r 772 (881)
T KOG0128|consen 736 --K-----------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR 772 (881)
T ss_pred --h-----------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccchhhhh
Confidence 1 468899999999999999999999999998766554
Q ss_pred C---CcEEEEEecChhhHHHHHHhcCCcccc
Q 024276 161 E---GTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 161 ~---~g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
. .|.|+|.|.+..+|..++..+++..+.
T Consensus 773 ~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~r 803 (881)
T KOG0128|consen 773 AGKPKGKARVDYNTEADASRKVASVDVAGKR 803 (881)
T ss_pred ccccccceeccCCCcchhhhhcccchhhhhh
Confidence 4 479999999999999999888887766
No 120
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=82.85 Aligned_cols=58 Identities=22% Similarity=0.354 Sum_probs=54.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhc
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l 182 (270)
.+|||++|++.+..+.|+..|++||+|+.+.++.|+.+ ||+||+|.+.+.|.+|.+.-
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC
Confidence 68999999999999999999999999999999999876 59999999999999998753
No 121
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.99 E-value=2.6e-09 Score=87.25 Aligned_cols=75 Identities=24% Similarity=0.414 Sum_probs=69.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|.++|..||.|..+.+..+.. .|+|||+|.+.++|..|+..++|..+. ++.+.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~----~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELE----GRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeEC----CceeEee
Confidence 58999999999999999999999999999999888753 369999999999999999999999999 9999998
Q ss_pred cCC
Q 024276 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
...
T Consensus 191 ~~~ 193 (306)
T COG0724 191 KAQ 193 (306)
T ss_pred ccc
Confidence 864
No 122
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.94 E-value=7.1e-09 Score=65.92 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=49.4
Q ss_pred CeEEEcCCCCCccHHH----HHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 7 RTIYVGNLPSDIREYE----VEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~----L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..|+|.|||.+..... |++|+..|| .|..|. .+.|+|.|.+++.|..|++.|+|-.+.|..|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 4689999999877655 667777886 777763 5789999999999999999999999999999999985
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 76 ~~ 77 (90)
T PF11608_consen 76 KN 77 (90)
T ss_dssp -S
T ss_pred Cc
Confidence 43
No 123
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.93 E-value=9.4e-09 Score=68.77 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=64.5
Q ss_pred CeEEEcCCCCCccHHHHHHHhhc--ccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccC----CceEEE
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFD----GCRLRV 77 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~l~v 77 (270)
+||+|.|||...|.++|.+++.. .|...-+.+.. ++.+.|||||.|.++++|......++|..|. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 69999999999999999999985 35666666644 4677999999999999999999999999995 667788
Q ss_pred EecCCC
Q 024276 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.+|.-.
T Consensus 82 ~yAriQ 87 (97)
T PF04059_consen 82 SYARIQ 87 (97)
T ss_pred ehhHhh
Confidence 877643
No 124
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.91 E-value=9.6e-09 Score=89.16 Aligned_cols=190 Identities=11% Similarity=-0.039 Sum_probs=126.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEe--c-CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK--I-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~--~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.+.+-+.++++++...|++++|... .|..+.|. . .+...|.++|+|..+.++++|++ -|.+.+-++.+.|.++-
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q~~P~g 387 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQTGPPG 387 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhcceeecCCC
Confidence 56778888999999999999999743 23333332 2 23337899999999999999999 67777778999988776
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCCCCCCC--CCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeE-EEE
Q 024276 82 GGSGRGPSSSDRRGG--YGGGGAGGAGGA--GAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEV 156 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~ 156 (270)
...-........... ..+...+...+. +......+...+...+.+|||..||..+++.++.+.|.....|++ |.|
T Consensus 388 ~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~l 467 (944)
T KOG4307|consen 388 NLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIEL 467 (944)
T ss_pred ccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEe
Confidence 542221111111000 000000000000 000111122345567889999999999999999999999888877 666
Q ss_pred eeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 157 SRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 157 ~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...+.. +.|||+|..++++..|...-+...++ .+.|+|..
T Consensus 468 t~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G----~r~irv~s 510 (944)
T KOG4307|consen 468 TRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPG----HRIIRVDS 510 (944)
T ss_pred ccCCcccccchhhheeccccccchhhhcccccccC----ceEEEeec
Confidence 555433 59999999999999888766666665 55565543
No 125
>smart00361 RRM_1 RNA recognition motif.
Probab=98.89 E-value=9.6e-09 Score=65.46 Aligned_cols=57 Identities=18% Similarity=0.218 Sum_probs=47.1
Q ss_pred HHHHHHHhh----hcCceeEEE-EeeCC------CCcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 138 WQDLKDHMR----KAGDVCFAE-VSRDS------EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 138 ~~~l~~~f~----~~g~v~~~~-~~~~~------~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+++|.++|. .||.|..+. +..+. ..|++||+|.+.++|..|+..|||..+. ++.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~----gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFD----GRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEe
Confidence 567888887 999999985 54433 2469999999999999999999999998 777754
No 126
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.83 E-value=1.9e-08 Score=76.90 Aligned_cols=70 Identities=26% Similarity=0.445 Sum_probs=62.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..+||++||+.+.+.+|+.+|..||.+.++.+.. ||+||+|++..+|..|+..+|+..|. +-.+.|+++.
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~----gf~fv~fed~rda~Dav~~l~~~~l~----~e~~vve~~r 71 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN----GFGFVEFEDPRDADDAVHDLDGKELC----GERLVVEHAR 71 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec----ccceeccCchhhhhcccchhcCceec----ceeeeeeccc
Confidence 4789999999999999999999999999988877 49999999999999999999999998 4445555554
No 127
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.82 E-value=5.8e-09 Score=81.68 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
-+...|||+|+.+.+|.+++...|+.||.|..+.|.. .+.+++||||+|.+.+.+..|+. ||+..|.|..+.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 4678999999999999999999999999998877744 35789999999999999999999 9999999999999988
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 755
No 128
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.82 E-value=1.1e-08 Score=82.81 Aligned_cols=173 Identities=20% Similarity=0.261 Sum_probs=128.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCC-cccCCceEEEEec
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~ 80 (270)
..+++|++++..++.+.++..+|..+|.+....+ ......++++++.|...+.+..|+. +.+ ..+.+..+.....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~-~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALE-ESGSKVLDGNKGEKDLN 165 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHH-hhhccccccccccCccc
Confidence 4678999999999999989999999997777665 2345679999999999999999999 555 4556666555544
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEE-EeCCCCCCCHHHHHHHhhhcCceeEEEEeeC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVI-VRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
............ .....+..+++ |.+++..++.++|..+|..+|.|..+.+...
T Consensus 166 ~~~~~~~~n~~~-------------------------~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~ 220 (285)
T KOG4210|consen 166 TRRGLRPKNKLS-------------------------RLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTD 220 (285)
T ss_pred ccccccccchhc-------------------------ccccCccccceeecccccccchHHHhhhccCcCcceeeccCCC
Confidence 433211110000 01111224555 9999999999999999999999999999888
Q ss_pred CCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCCCCC
Q 024276 160 SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSPSRS 208 (270)
Q Consensus 160 ~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~~r~ 208 (270)
... ++|||.|.....+..++.. +...+. +..+.+......+...
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~~~ 268 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIG----GRPLRLEEDEPRPKSD 268 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCccc----CcccccccCCCCcccc
Confidence 766 4999999999999999987 777777 7777777776544433
No 129
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.80 E-value=1e-07 Score=77.47 Aligned_cols=158 Identities=20% Similarity=0.206 Sum_probs=109.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEE---EEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI---ELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~---~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++..|...+||...++.+|-.+|...-..... -+...+.-.|.|.|.|.++|.-+.|++ -+.+.+.++.|.|..+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryievYka 136 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYIEVYKA 136 (508)
T ss_pred CcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCceeeecc
Confidence 567778889999999999999999854211111 112234446899999999999999999 7888889999998876
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhc-----C--ceeE
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKA-----G--DVCF 153 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-----g--~v~~ 153 (270)
....--.- .+++......-.+......|...+||++.++.++.++|..- | .|.+
T Consensus 137 ~ge~f~~i-------------------agg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLF 197 (508)
T KOG1365|consen 137 TGEEFLKI-------------------AGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLF 197 (508)
T ss_pred CchhheEe-------------------cCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEE
Confidence 54311000 00001111111222334577788999999999999999632 2 3444
Q ss_pred EEEeeCCCCcEEEEEecChhhHHHHHHh
Q 024276 154 AEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 154 ~~~~~~~~~g~afv~f~~~~~a~~a~~~ 181 (270)
+....++.+|-|||.|..+++|+.|+.+
T Consensus 198 V~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 198 VTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred EECCCCCcccceEEEecCHHHHHHHHHH
Confidence 5555556678999999999999999975
No 130
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.77 E-value=6.7e-08 Score=82.33 Aligned_cols=79 Identities=27% Similarity=0.358 Sum_probs=70.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC-c---EEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-T---YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-g---~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
......|||.+|...+..-+|+.+|++||+|+-.+++.+... | |+||++.+.++|.++|.+||.++|. |+.|
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELH----GrmI 477 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELH----GRMI 477 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhc----ceee
Confidence 345679999999999999999999999999999999887654 2 9999999999999999999999999 8999
Q ss_pred eeecCCC
Q 024276 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|+.++.
T Consensus 478 SVEkaKN 484 (940)
T KOG4661|consen 478 SVEKAKN 484 (940)
T ss_pred eeeeccc
Confidence 8888763
No 131
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.76 E-value=4.5e-08 Score=74.23 Aligned_cols=75 Identities=13% Similarity=0.144 Sum_probs=67.3
Q ss_pred ceEEEeCCCCCCCHHHHHH----HhhhcCceeEEEEeeC-CCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 125 YRVIVRGLPSSASWQDLKD----HMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~----~f~~~g~v~~~~~~~~-~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.+|||.||+..+..++|+. +|+.||.|.+|..... +-.|.|||.|.+.+.|..|+..|+|..+- |..+++.
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFy----gK~mriq 85 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFY----GKPMRIQ 85 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCccc----Cchhhee
Confidence 3999999999999999887 9999999999877644 34479999999999999999999999998 9999998
Q ss_pred cCCC
Q 024276 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+++.
T Consensus 86 yA~s 89 (221)
T KOG4206|consen 86 YAKS 89 (221)
T ss_pred cccC
Confidence 8874
No 132
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.75 E-value=9.9e-08 Score=83.22 Aligned_cols=79 Identities=24% Similarity=0.389 Sum_probs=71.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.++.|||+||++.++++.|...|..||+|..++|+.. .....++||.|-+-.+|++|++.|+|..+.+..|++.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~g 252 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLG 252 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeec
Confidence 4688999999999999999999999999999999642 2456799999999999999999999999999999999
Q ss_pred ecCCC
Q 024276 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
|.+.-
T Consensus 253 Wgk~V 257 (877)
T KOG0151|consen 253 WGKAV 257 (877)
T ss_pred ccccc
Confidence 98643
No 133
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.61 E-value=1.2e-07 Score=83.62 Aligned_cols=76 Identities=16% Similarity=0.221 Sum_probs=68.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+||||+.|+..+++.||..+|+.||.|..|.++... ++|||.+....+|.+|+.+|.+..+. ...|++.++-.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R--~cAfI~M~~RqdA~kalqkl~n~kv~----~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR--GCAFIKMVRRQDAEKALQKLSNVKVA----DKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC--ceeEEEEeehhHHHHHHHHHhccccc----ceeeEEeeecc
Confidence 4699999999999999999999999999998887765 69999999999999999999988888 88888888764
Q ss_pred CC
Q 024276 204 SP 205 (270)
Q Consensus 204 ~~ 205 (270)
..
T Consensus 495 ~G 496 (894)
T KOG0132|consen 495 KG 496 (894)
T ss_pred CC
Confidence 43
No 134
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.58 E-value=9.9e-08 Score=73.40 Aligned_cols=158 Identities=16% Similarity=0.239 Sum_probs=111.0
Q ss_pred EEcCCCCCccHHH-H--HHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 10 YVGNLPSDIREYE-V--EDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 10 ~V~nl~~~~t~~~-L--~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+++++-..+.++- | ...|+.|-.....++..+ +.-.+++|+.|.....-.++-..-++.+++-.+|++.-...-
T Consensus 100 ~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtsw- 178 (290)
T KOG0226|consen 100 FQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSW- 178 (290)
T ss_pred cccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecccccc-
Confidence 4445544444443 2 566776655555555432 445789999999888888887766777766665444322211
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC--
Q 024276 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-- 162 (270)
..+ ....-......||.+.|...++++.|...|.+|-.....+++++..+
T Consensus 179 -edP---------------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgK 230 (290)
T KOG0226|consen 179 -EDP---------------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGK 230 (290)
T ss_pred -CCc---------------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccc
Confidence 000 00112234579999999999999999999999988888888888665
Q ss_pred --cEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 163 --g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
||+||-|.++.++..|+.+|+|..++ .+.|++..
T Consensus 231 SkgygfVSf~~pad~~rAmrem~gkyVg----srpiklRk 266 (290)
T KOG0226|consen 231 SKGYGFVSFRDPADYVRAMREMNGKYVG----SRPIKLRK 266 (290)
T ss_pred cccceeeeecCHHHHHHHHHhhcccccc----cchhHhhh
Confidence 59999999999999999999999998 66665543
No 135
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.58 E-value=1.7e-07 Score=64.26 Aligned_cols=71 Identities=13% Similarity=0.286 Sum_probs=45.7
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC-----cccCCceEEEEec
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-----YNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-----~~~~g~~l~v~~~ 80 (270)
+.|+|.+++..++-++|+++|+.||.|..|.+... -..|||.|.++++|+.|+..+.. ..|.+..+.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vL 77 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVL 77 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE--
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEEC
Confidence 57999999999999999999999999999988653 45899999999999999987643 4667777766654
No 136
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.50 E-value=5.3e-07 Score=70.59 Aligned_cols=75 Identities=20% Similarity=0.290 Sum_probs=67.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
...|+|.|||+.+.++||+++|..||.+..+-+..++.+ |.|-|.|...++|..|++.++|..++ +..+.+..
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ld----G~~mk~~~ 158 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALD----GRPMKIEI 158 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccC----CceeeeEE
Confidence 378999999999999999999999999888888888776 79999999999999999999998777 77777666
Q ss_pred CC
Q 024276 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 159 i~ 160 (243)
T KOG0533|consen 159 IS 160 (243)
T ss_pred ec
Confidence 54
No 137
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=8.1e-08 Score=72.27 Aligned_cols=75 Identities=13% Similarity=0.179 Sum_probs=65.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC--cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+...+|||.|+...++++-|.++|-..|+|..+.|..+... .||||.|+++....-|++.+||..+. +..+++
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~----~~e~q~ 81 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLE----EDEEQR 81 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhc----cchhhc
Confidence 345689999999999999999999999999999999877655 49999999999999999999998887 455544
Q ss_pred e
Q 024276 199 K 199 (270)
Q Consensus 199 ~ 199 (270)
.
T Consensus 82 ~ 82 (267)
T KOG4454|consen 82 T 82 (267)
T ss_pred c
Confidence 3
No 138
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.45 E-value=7.1e-09 Score=84.19 Aligned_cols=64 Identities=20% Similarity=0.189 Sum_probs=53.7
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+||+|++|+..+-..++.++|..+|+|....+.. +....+|.|+|....+...|+. ++|..+.
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~as-k~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTAS-KSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhc-cCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 36899999999999999999999999998877633 2225678899999999999999 7776665
No 139
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.45 E-value=2.4e-07 Score=71.32 Aligned_cols=77 Identities=18% Similarity=0.324 Sum_probs=67.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.-.||-+.|..+++++.|-..|.+|-.....++ ..+++++||+||-|.++.++..|+..|||.+++.++|++..+.
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~ 268 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSE 268 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhh
Confidence 4467999999999999999999999876666655 4578999999999999999999999999999999999876554
No 140
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.44 E-value=7.5e-07 Score=71.65 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=64.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..-.+|||++|...+++.+|.++|.+||+|..+.+.... ++|||+|.+.+.|+.|.++.-+..+- .|.+|.+.+.
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~--~CAFv~ftTR~aAE~Aae~~~n~lvI---~G~Rl~i~Wg 300 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK--GCAFVTFTTREAAEKAAEKSFNKLVI---NGFRLKIKWG 300 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc--ccceeeehhhHHHHHHHHhhcceeee---cceEEEEEeC
Confidence 345799999999999999999999999999999988765 49999999999999998876553332 2888888866
Q ss_pred CC
Q 024276 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
..
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 54
No 141
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.43 E-value=1.7e-06 Score=65.51 Aligned_cols=86 Identities=14% Similarity=0.200 Sum_probs=68.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeC-CCC----cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-SEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..++|||.+||.++...+|-.+|..|-..+...+... +.+ .+||+.|.+..+|..|+.+|||..|+ ...+..+.
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFD-pE~~stLh 111 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFD-PETGSTLH 111 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeec-cccCceeE
Confidence 4589999999999999999999999866665554433 322 39999999999999999999999986 44578888
Q ss_pred eecCCCCCCCCC
Q 024276 198 VKRYDRSPSRSR 209 (270)
Q Consensus 198 v~~~~~~~~r~r 209 (270)
++.++....+.+
T Consensus 112 iElAKSNtK~kr 123 (284)
T KOG1457|consen 112 IELAKSNTKRKR 123 (284)
T ss_pred eeehhcCccccc
Confidence 999875444433
No 142
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.40 E-value=3.3e-07 Score=74.15 Aligned_cols=81 Identities=28% Similarity=0.385 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEE--------EEE---ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IEL---KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~--------~~~---~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
..+-+|||.+||..+++++|..+|.+||.|.. |.| ++|+.+++-|.|.|.++..|+.|+..+++..+.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 35679999999999999999999999997743 333 4578899999999999999999999999999999
Q ss_pred ceEEEEecCCCC
Q 024276 73 CRLRVELAHGGS 84 (270)
Q Consensus 73 ~~l~v~~~~~~~ 84 (270)
.+|+|.++....
T Consensus 144 n~ikvs~a~~r~ 155 (351)
T KOG1995|consen 144 NTIKVSLAERRT 155 (351)
T ss_pred CCchhhhhhhcc
Confidence 999999887664
No 143
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.39 E-value=4.1e-07 Score=77.53 Aligned_cols=71 Identities=20% Similarity=0.250 Sum_probs=61.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
-.+.+|+|.|||..+++++|..+|+.||+|..+....... +.+||+|.+..+|+.|+++|++.++. ++.|+
T Consensus 73 ~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~-~~~~v~FyDvR~A~~Alk~l~~~~~~----~~~~k 143 (549)
T KOG4660|consen 73 MNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR-GIVFVEFYDVRDAERALKALNRREIA----GKRIK 143 (549)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC-ceEEEEEeehHhHHHHHHHHHHHHhh----hhhhc
Confidence 4457999999999999999999999999998865544433 59999999999999999999999998 66665
No 144
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.39 E-value=9.6e-06 Score=68.81 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=62.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC----CCcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~----~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....|||.|||.+++.++|+++|..||.|....|..-. ...||||+|++.++++.|+.+- -..++ ++++.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig----~~kl~ 360 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIG----GRKLN 360 (419)
T ss_pred ecccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccC----CeeEE
Confidence 344569999999999999999999999999987665533 2249999999999999999875 44555 88888
Q ss_pred eecCCC
Q 024276 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|+..+.
T Consensus 361 Veek~~ 366 (419)
T KOG0116|consen 361 VEEKRP 366 (419)
T ss_pred EEeccc
Confidence 887753
No 145
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.36 E-value=1.9e-06 Score=64.55 Aligned_cols=66 Identities=21% Similarity=0.260 Sum_probs=57.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhc-CceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKA-GDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~-g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
....++|..+|.-+.+.++..+|.++ |.|..+.+.++..+ |||||+|++++.|.-|.+.||+..+.
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~ 118 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLM 118 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhh
Confidence 34578999999999999999999998 67777777676655 49999999999999999999999887
No 146
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.35 E-value=2e-06 Score=69.23 Aligned_cols=76 Identities=28% Similarity=0.450 Sum_probs=67.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeE--------EEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
....|||.|||.++|.+++.++|+++|.|.. |++..+..+ |-|+|.|-..+...-|+..|++..+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r--- 209 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR--- 209 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc---
Confidence 3457999999999999999999999998754 677777665 68999999999999999999999999
Q ss_pred cccceeeecCC
Q 024276 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|..|+|+.++
T Consensus 210 -g~~~rVerAk 219 (382)
T KOG1548|consen 210 -GKKLRVERAK 219 (382)
T ss_pred -CcEEEEehhh
Confidence 9999998876
No 147
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=98.35 E-value=3.8e-07 Score=70.52 Aligned_cols=63 Identities=22% Similarity=0.294 Sum_probs=52.8
Q ss_pred HHHHHHhh-cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 21 YEVEDLFY-KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~L~~~F~-~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++|...|+ +||+|++++|-.+ ....|.+||.|..+++|++|+..||+-.|.|++|...++...
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 55666666 8999999987432 355899999999999999999999999999999999987644
No 148
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.33 E-value=6.3e-06 Score=55.27 Aligned_cols=77 Identities=16% Similarity=0.237 Sum_probs=61.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhh--cCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRK--AGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~--~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
++|.|.|+|...+.++|.+++.. .|....+.++.|-. -|||||.|.+++.|..-.+.++|.....-...+...+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 58999999999999999988866 35666677777754 3799999999999999999999998874444444455
Q ss_pred ecC
Q 024276 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
..+
T Consensus 82 ~yA 84 (97)
T PF04059_consen 82 SYA 84 (97)
T ss_pred ehh
Confidence 444
No 149
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.32 E-value=5.6e-06 Score=52.90 Aligned_cols=69 Identities=19% Similarity=0.284 Sum_probs=47.8
Q ss_pred ceEEEeCCCCCCCHHH----HHHHhhhcC-ceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 125 YRVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..|+|.|||...+... |++++..+| .|..+ . ++.|+|.|.+.+.|..|.+.|+|..+. |.+|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~----~~tAilrF~~~~~A~RA~KRmegEdVf----G~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S----GGTAILRFPNQEFAERAQKRMEGEDVF----GNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE--------TT-EEEEESSHHHHHHHHHHHTT--SS----SS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e----CCEEEEEeCCHHHHHHHHHhhcccccc----cceEEEE
Confidence 4799999999998775 567777776 56444 2 358999999999999999999999998 9999998
Q ss_pred cCCC
Q 024276 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+...
T Consensus 73 ~~~~ 76 (90)
T PF11608_consen 73 FSPK 76 (90)
T ss_dssp SS--
T ss_pred EcCC
Confidence 8753
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.27 E-value=2.9e-06 Score=50.39 Aligned_cols=53 Identities=30% Similarity=0.548 Sum_probs=43.8
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHH
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
++.|-|.|.++... ++|...|..||+|.++.+.. ....+||.|.+..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~~---~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVPE---STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcCC---CCcEEEEEECCHHHHHhhC
Confidence 36789999998866 45566888999999988862 2679999999999999986
No 151
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.25 E-value=2.9e-06 Score=74.35 Aligned_cols=82 Identities=15% Similarity=0.142 Sum_probs=68.4
Q ss_pred CCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC-------cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 116 RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 116 ~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-------g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.+..-.+.+..|||+||++.++++.|...|..||+|..++|+..... .++||.|-+..+|+.|++.|+|..+.
T Consensus 166 sfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~ 245 (877)
T KOG0151|consen 166 SFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVM 245 (877)
T ss_pred cCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeee
Confidence 33344556789999999999999999999999999999999876432 49999999999999999999999887
Q ss_pred CcccccceeeecC
Q 024276 189 NPWARGRITVKRY 201 (270)
Q Consensus 189 ~~~~~~~i~v~~~ 201 (270)
...+++-+.
T Consensus 246 ----~~e~K~gWg 254 (877)
T KOG0151|consen 246 ----EYEMKLGWG 254 (877)
T ss_pred ----eeeeeeccc
Confidence 555554444
No 152
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.21 E-value=1.9e-06 Score=69.97 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=71.1
Q ss_pred CCCCeEE-EcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 4 RFSRTIY-VGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~-V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.++.++| |+||+.+++.++|+..|..+|.|..+.+.. ++.++|||||.|.+...+..|+.. +...+++.++.+..
T Consensus 182 ~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 260 (285)
T KOG4210|consen 182 GPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEE 260 (285)
T ss_pred CccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccccc
Confidence 4566777 999999999999999999999999999843 578899999999999999999997 88999999999998
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
....
T Consensus 261 ~~~~ 264 (285)
T KOG4210|consen 261 DEPR 264 (285)
T ss_pred CCCC
Confidence 8766
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.14 E-value=6.5e-06 Score=56.52 Aligned_cols=59 Identities=27% Similarity=0.503 Sum_probs=40.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCc
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~ 185 (270)
+.|+|.+++..++.++|+++|..||.|.+|.+..+.. .|||.|.+++.|+.|+.++.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~--~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT--EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S--EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC--EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999999999887654 8999999999999999877544
No 154
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.11 E-value=2.4e-05 Score=61.54 Aligned_cols=76 Identities=18% Similarity=0.215 Sum_probs=66.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+||+|+...++.++++.+|+.||.|..+.+..+... +|+||+|.+.+.++.|+. |+|..+. +..+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~----~~~i~ 173 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIP----GPAIE 173 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccc----cccce
Confidence 34579999999999999999999999999998888877655 499999999999999999 9999998 77777
Q ss_pred eecCC
Q 024276 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..-.
T Consensus 174 vt~~r 178 (231)
T KOG4209|consen 174 VTLKR 178 (231)
T ss_pred eeeee
Confidence 66554
No 155
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.11 E-value=9.6e-06 Score=65.16 Aligned_cols=75 Identities=23% Similarity=0.445 Sum_probs=60.7
Q ss_pred CeEEEcCCCCCccHHH----H--HHHhhcccceEEEEEec-CC----CCC-cEEEEEECCHHHHHHHHHhcCCcccCCce
Q 024276 7 RTIYVGNLPSDIREYE----V--EDLFYKYGRILDIELKI-PP----RPP-CYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~----L--~~~F~~~G~v~~~~~~~-~~----~~~-g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
+-|||-+||+.+..|+ | .++|.+||.|..|.+.. +. ... --.||+|.+.|+|..||...+|..++|+.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr~ 194 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGRV 194 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCce
Confidence 4589999999877776 2 47999999999998832 21 111 12499999999999999999999999999
Q ss_pred EEEEecC
Q 024276 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
|+..|..
T Consensus 195 lkatYGT 201 (480)
T COG5175 195 LKATYGT 201 (480)
T ss_pred EeeecCc
Confidence 9998875
No 156
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=1.4e-05 Score=68.44 Aligned_cols=75 Identities=25% Similarity=0.392 Sum_probs=59.9
Q ss_pred CCeEEEcCCCCCcc------HHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccC-CceEE
Q 024276 6 SRTIYVGNLPSDIR------EYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLR 76 (270)
Q Consensus 6 s~~l~V~nl~~~~t------~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~ 76 (270)
...|+|.|+|.--. ..-|.++|+++|+|..+.+.. .++.+||.|++|++..+|+.|++.|||..|+ .+.+.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~ 137 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFF 137 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccceEE
Confidence 35789999987522 234567899999999999854 4678999999999999999999999999885 55666
Q ss_pred EEec
Q 024276 77 VELA 80 (270)
Q Consensus 77 v~~~ 80 (270)
|..-
T Consensus 138 v~~f 141 (698)
T KOG2314|consen 138 VRLF 141 (698)
T ss_pred eehh
Confidence 6543
No 157
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.03 E-value=2.7e-05 Score=68.38 Aligned_cols=76 Identities=20% Similarity=0.313 Sum_probs=64.8
Q ss_pred CCCC-eEEEcCCCCCccHHHHHHHhhcccce-EEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 4 RFSR-TIYVGNLPSDIREYEVEDLFYKYGRI-LDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~-~l~V~nl~~~~t~~~L~~~F~~~G~v-~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+.+ .|-+.|+|++++-+||.++|..|-.+ .+|.+ ..+|.+.|-|.|.|++.++|..|...|++..|..+.|.+..
T Consensus 864 ~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 864 SPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSLRI 943 (944)
T ss_pred CCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCcccceeEEEEe
Confidence 4556 78899999999999999999999644 33444 33578899999999999999999999999999999988753
No 158
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=98.01 E-value=1.8e-05 Score=65.56 Aligned_cols=66 Identities=27% Similarity=0.244 Sum_probs=56.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCC--------C--------CCcEEEEEECCHHHHHHHHHhcCCc
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP--------R--------PPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~--------~--------~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
++++|.+.|||.+-..+.|.+||..||.|..|.|...+ . .+-+|||+|.+.+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 68999999999999999999999999999999994431 1 1458999999999999999977654
Q ss_pred cc
Q 024276 69 NF 70 (270)
Q Consensus 69 ~~ 70 (270)
..
T Consensus 310 ~~ 311 (484)
T KOG1855|consen 310 QN 311 (484)
T ss_pred hh
Confidence 43
No 159
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.00 E-value=3.1e-06 Score=65.45 Aligned_cols=70 Identities=17% Similarity=0.274 Sum_probs=59.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-----------CCCC----cEEEEEECCHHHHHHHHHhcCCcc
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----------PRPP----CYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-----------~~~~----g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
.+-.||+++||+.+...-|++||++||.|-.|++... +... .-|.|+|.+-..|......||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 3458999999999999999999999999999999332 1122 246799999999999999999999
Q ss_pred cCCce
Q 024276 70 FDGCR 74 (270)
Q Consensus 70 ~~g~~ 74 (270)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99876
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.99 E-value=5.8e-05 Score=50.98 Aligned_cols=76 Identities=20% Similarity=0.293 Sum_probs=54.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEe----------cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCc
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK----------IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~----------~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
...+.|.|-+.|+. ....|.+.|++||.|.+..-. ..........|+|.++.+|.+||. .||..|.|.
T Consensus 4 ~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 4 DSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred cCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 35677999999988 456888999999999887510 011235688999999999999999 899999886
Q ss_pred eE-EEEecC
Q 024276 74 RL-RVELAH 81 (270)
Q Consensus 74 ~l-~v~~~~ 81 (270)
.| -|.+.+
T Consensus 82 ~mvGV~~~~ 90 (100)
T PF05172_consen 82 LMVGVKPCD 90 (100)
T ss_dssp EEEEEEE-H
T ss_pred EEEEEEEcH
Confidence 54 466653
No 161
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.98 E-value=5e-06 Score=71.53 Aligned_cols=77 Identities=12% Similarity=0.226 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhh-cccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc---CCceEEEEe
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~v~~ 79 (270)
..++.|+|.||-.-+|.-+|++|+. .+|.|.++ ++ .+-+..|||.|.+.++|......|||+.| +++.|.+.|
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm--DkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf 518 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM--DKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADF 518 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HH--HHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeee
Confidence 5789999999999999999999999 67777776 32 12256899999999999999999999999 678899998
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
....
T Consensus 519 ~~~d 522 (718)
T KOG2416|consen 519 VRAD 522 (718)
T ss_pred cchh
Confidence 8643
No 162
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.94 E-value=3.9e-05 Score=65.27 Aligned_cols=61 Identities=25% Similarity=0.363 Sum_probs=55.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhh-cccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHh
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFY-KYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRG 64 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~-~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~ 64 (270)
++.+|||||+||..++.++|-.+|+ .||.|..+-|-.+ +-++|-|=|+|.+.++-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 6889999999999999999999999 7999999988554 46789999999999999999973
No 163
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.85 E-value=3.4e-05 Score=69.31 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=68.8
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...|+|.|+|+..|.+.|+.+|..+|.+.++.+ ...|+++|.|||.|.++.+|..++...+...+.-..+.|..+.+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 357899999999999999999999999999877 44689999999999999999999998998888888888887665
No 164
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.81 E-value=0.00011 Score=52.70 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=46.6
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+|.+.|..||+|.-+++.. +.-+|+|.+-++|.+|+. ++|..|+|+.|+|....+.
T Consensus 51 ~~ll~~~~~~GevvLvRfv~-----~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVG-----DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEET-----TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred HHHHHHHHhCCceEEEEEeC-----CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 36778899999998888773 468999999999999999 9999999999999986543
No 165
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.74 E-value=0.00015 Score=56.44 Aligned_cols=101 Identities=27% Similarity=0.288 Sum_probs=79.8
Q ss_pred HHHHHHHhcCCcccCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCC
Q 024276 57 DAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA 136 (270)
Q Consensus 57 ~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~ 136 (270)
-|..|...|++....|+.|.|.++... .|+|.||..-+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a------------------------------------------~l~V~nl~~~~ 43 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA------------------------------------------ELYVVNLMQGA 43 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc------------------------------------------eEEEEecchhh
Confidence 356677778999999999999998753 89999999999
Q ss_pred CHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 137 SWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 137 ~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+.+.+.|..||+|....++.|..+ +-++|+|...-.|.+|+..+.-.-+.....+...-|.
T Consensus 44 sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 44 SNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred hhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 99999999999999998766665433 5899999999999999988754444433334444333
No 166
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.65 E-value=5.4e-05 Score=61.24 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=62.8
Q ss_pred CeEEEcCCCCCccHHHHHHHhhccc--ceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G--~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
-.+|||||-..+|++||.+.+...| .|.++++. .+|.++|||+|-..+..++++.++.|-...|+|+.-.|...
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4689999999999999999988776 55566663 35899999999999999999999999999999987666544
No 167
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00018 Score=42.66 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=41.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHH
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAI 179 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~ 179 (270)
..|-|.+.+....+. +..+|..||+|..+.+... ....+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~--~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPES--TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCC--CcEEEEEECCHHHHHhhC
Confidence 467888888776654 5558889999999887732 249999999999999985
No 168
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.61 E-value=0.00032 Score=57.25 Aligned_cols=78 Identities=23% Similarity=0.305 Sum_probs=64.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeE--------EEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.....+|||-+||..+++.+|.++|.++|.|.. ++|.++..+ +-|.|.|++...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 455679999999999999999999999997743 444444433 59999999999999999999999998
Q ss_pred CcccccceeeecCC
Q 024276 189 NPWARGRITVKRYD 202 (270)
Q Consensus 189 ~~~~~~~i~v~~~~ 202 (270)
+..|+|..+.
T Consensus 143 ----gn~ikvs~a~ 152 (351)
T KOG1995|consen 143 ----GNTIKVSLAE 152 (351)
T ss_pred ----CCCchhhhhh
Confidence 6777766655
No 169
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.53 E-value=0.00014 Score=56.67 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=46.1
Q ss_pred HHHHHHhh-hcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 139 QDLKDHMR-KAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 139 ~~l~~~f~-~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
++|...|+ +||.|+.+.+-.+... |-+||.|...++|+.|++.||+..+. |+.|..++.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~----G~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYN----GRPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCcccc----CCcceeeec
Confidence 45555565 8999988766554322 68999999999999999999999999 888765543
No 170
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.46 E-value=0.00022 Score=61.37 Aligned_cols=66 Identities=27% Similarity=0.383 Sum_probs=55.8
Q ss_pred CcceEEEeCCCCCCC------HHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 123 SEYRVIVRGLPSSAS------WQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~------~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
....|+|.|+|---. ...|..+|+++|+++.+.++.+..+ ||.|++|++..+|+.|++.|||..+.
T Consensus 57 ~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ld 131 (698)
T KOG2314|consen 57 FDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLD 131 (698)
T ss_pred cceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceec
Confidence 346889999884432 2357899999999999999977766 59999999999999999999999987
No 171
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.45 E-value=0.00042 Score=54.94 Aligned_cols=62 Identities=26% Similarity=0.347 Sum_probs=50.1
Q ss_pred HHHHHHHhhcccceEEEEEecCC----CCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 20 EYEVEDLFYKYGRILDIELKIPP----RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++.+...+||.|..|.|.... .-.--.||+|...++|.+|+-.|||.+|+|+.+...+-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45677888899999999885532 112347999999999999999999999999999877654
No 172
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.45 E-value=0.00021 Score=64.78 Aligned_cols=78 Identities=22% Similarity=0.297 Sum_probs=69.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC--CceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~ 81 (270)
.+++.++|++|++++....|...|..||.|..|.+-.. ..||||.|++...|+.|+..|-|..|+ .+.|.|.++.
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg---q~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG---QPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC---CcceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 57889999999999999999999999999999888544 579999999999999999999999996 4678999887
Q ss_pred CCC
Q 024276 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 530 ~~~ 532 (975)
T KOG0112|consen 530 PPG 532 (975)
T ss_pred CCC
Confidence 653
No 173
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.41 E-value=0.0001 Score=57.26 Aligned_cols=65 Identities=15% Similarity=0.198 Sum_probs=58.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---------c-------EEEEEecChhhHHHHHHhcCCccc
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---------T-------YGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---------g-------~afv~f~~~~~a~~a~~~l~g~~~ 187 (270)
.-.||++++|+.+...-|+++|..||.|-.|.+...... + -++|+|.+...|......|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 358999999999999999999999999999998766433 1 489999999999999999999999
Q ss_pred c
Q 024276 188 R 188 (270)
Q Consensus 188 ~ 188 (270)
+
T Consensus 154 g 154 (278)
T KOG3152|consen 154 G 154 (278)
T ss_pred C
Confidence 8
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.36 E-value=0.00096 Score=55.71 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=55.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeC---CCC--------------cEEEEEecChhhHHHHHHhcCC
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEG--------------TYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~--------------g~afv~f~~~~~a~~a~~~l~g 184 (270)
.+..+|.+.|||.+-..+.|.++|..+|.|..|.|... +.. -+|+|+|+..+.|.+|.+.|+.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45689999999999999999999999999999998776 211 1799999999999999998855
Q ss_pred cc
Q 024276 185 TE 186 (270)
Q Consensus 185 ~~ 186 (270)
..
T Consensus 309 e~ 310 (484)
T KOG1855|consen 309 EQ 310 (484)
T ss_pred hh
Confidence 43
No 175
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.28 E-value=0.00091 Score=54.11 Aligned_cols=75 Identities=15% Similarity=0.230 Sum_probs=60.1
Q ss_pred CCcceEEEeCCCCCCCHHHH------HHHhhhcCceeEEEEeeCCCC-----c--EEEEEecChhhHHHHHHhcCCcccc
Q 024276 122 HSEYRVIVRGLPSSASWQDL------KDHMRKAGDVCFAEVSRDSEG-----T--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l------~~~f~~~g~v~~~~~~~~~~~-----g--~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
....-+||.+|++.+..+++ .++|.+||.|..+.+.+.... + -.||.|.+.++|..||.+.+|..++
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 34568999999999888773 689999999988777654321 2 3499999999999999999999988
Q ss_pred Ccccccceeeec
Q 024276 189 NPWARGRITVKR 200 (270)
Q Consensus 189 ~~~~~~~i~v~~ 200 (270)
|+.|+..+
T Consensus 192 ----Gr~lkatY 199 (480)
T COG5175 192 ----GRVLKATY 199 (480)
T ss_pred ----CceEeeec
Confidence 78777544
No 176
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.28 E-value=0.00094 Score=53.00 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=50.9
Q ss_pred HHHHHHHhhhcCceeEEEEeeCCCC-----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 138 WQDLKDHMRKAGDVCFAEVSRDSEG-----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 138 ~~~l~~~f~~~g~v~~~~~~~~~~~-----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
++++.+.+++||.|..|.|...+.. --.||+|+..++|.+|+-.|||..|+ |+.+...++.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG----Gr~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG----GRVVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec----ceeeeheecc
Confidence 4568899999999999887766543 26899999999999999999999999 8877766654
No 177
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.20 E-value=0.0019 Score=50.35 Aligned_cols=75 Identities=25% Similarity=0.283 Sum_probs=61.0
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCC----cccCCceEEEEec
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDG----YNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~----~~~~g~~l~v~~~ 80 (270)
..|+|.||+.-++.+.|.+-|..||+|....++.+ ++..+-++|+|...-.|.+|+..++- ....+.+.-|.+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~VeP~ 111 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVEPM 111 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCChh
Confidence 67999999999999999999999999988766554 56778899999999999999987743 2234666666655
Q ss_pred C
Q 024276 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 112 e 112 (275)
T KOG0115|consen 112 E 112 (275)
T ss_pred h
Confidence 4
No 178
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.14 E-value=0.0032 Score=40.42 Aligned_cols=56 Identities=16% Similarity=0.317 Sum_probs=42.5
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
.+..+|+ .|......||.+||+.||.|. |..+.+ .-|||...+.+.|..|+..+..
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d----TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND----TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT----TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC----CcEEEEeecHHHHHHHHHHhcc
Confidence 3566776 999999999999999999875 555543 4799999999999999987753
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.98 E-value=0.0033 Score=42.55 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=45.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEE-E----------eeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAE-V----------SRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~-~----------~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...|.|-+.|+. ....|.++|++||.|+... + .....++...|.|.++.+|.+|+. .||..+.
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~ 79 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFS 79 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEET
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEc
Confidence 467899999988 5667888999999997764 0 111223489999999999999998 6888877
No 180
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.92 E-value=0.0067 Score=36.94 Aligned_cols=54 Identities=17% Similarity=0.299 Sum_probs=43.2
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcc---cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKY---GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~---G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..|+|.||. +++.+||+.+|..| .....|.++-+ .-|-|-|.+.+.|.+||..|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdD----tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDD----TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecC----CcEEEEECCHHHHHHHHHcC
Confidence 479999985 57889999999988 13456777654 35889999999999999854
No 181
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=96.73 E-value=0.00019 Score=59.68 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=68.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
-++.+.|.|||+....+.|-.|+.+||.|..|....+.......-|+|...+.+..|+..|+|..+....++|.|-....
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 36778999999999999999999999999999886554334455678999999999999999999999999998865543
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.66 E-value=0.024 Score=39.18 Aligned_cols=67 Identities=13% Similarity=0.108 Sum_probs=48.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhccc-ceEEEEEecCCCC-CcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRP-PCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~~-~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+..+.+...|..++.++|..+.+.+- .|..++|+.++.+ +=-+.++|.++++|......+||..|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 344444544555566667766666553 6778888888764 445778999999999999999998875
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.62 E-value=0.014 Score=41.55 Aligned_cols=72 Identities=17% Similarity=0.177 Sum_probs=55.8
Q ss_pred CCCeEEEcCCCCCccH-HHHH---HHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 5 FSRTIYVGNLPSDIRE-YEVE---DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~-~~L~---~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+--||.|.-|..++.. +||+ ..++.||+|..|.+.- +..|.|.|.+..+|=+|+.++.. ...|..+.+.+-
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG----rqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qCsWq 159 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG----RQSAVVVFKDITSACKAVSAFQS-RAPGTMFQCSWQ 159 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC----CceEEEEehhhHHHHHHHHhhcC-CCCCceEEeecc
Confidence 4568999888777543 4444 5567899999998743 67899999999999999998875 666778887765
Q ss_pred C
Q 024276 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 160 q 160 (166)
T PF15023_consen 160 Q 160 (166)
T ss_pred c
Confidence 4
No 184
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.58 E-value=0.024 Score=34.51 Aligned_cols=54 Identities=22% Similarity=0.170 Sum_probs=44.5
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhc---CceeEEEEeeCCCCcEEEEEecChhhHHHHHHhc
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKA---GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~---g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 182 (270)
..|+|.++. .++.++|+.+|..| .....++.+.|. .|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt---ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT---SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC---cEEEEECCHHHHHHHHHcC
Confidence 578999985 57888999999998 234567877776 7999999999999999865
No 185
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.57 E-value=0.0021 Score=48.63 Aligned_cols=79 Identities=19% Similarity=0.184 Sum_probs=50.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhc-ccceE---EEEEecC-----CCCCcEEEEEECCHHHHHHHHHhcCCcccCCc-
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRIL---DIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC- 73 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~-~G~v~---~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~- 73 (270)
.....|.|.+||+.+|++++.+.+.. ++... .+.-... .....-|||.|.+.+++......++|..|-+.
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 45679999999999999999997776 66552 2221111 12245799999999999999999999777322
Q ss_pred ----eEEEEecCC
Q 024276 74 ----RLRVELAHG 82 (270)
Q Consensus 74 ----~l~v~~~~~ 82 (270)
+..|+++-.
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 345666654
No 186
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=96.54 E-value=0.023 Score=36.33 Aligned_cols=58 Identities=22% Similarity=0.341 Sum_probs=36.8
Q ss_pred CccHHHHHHHhhccc-----ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 17 DIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+++.+|..++...+ .|-.|.+. ..|+||+-... .|..++..|++..+.|++|.|+.+
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~-----~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF-----DNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe-----eeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 388899999888653 67778887 45999998765 788899999999999999999864
No 187
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=96.53 E-value=0.0011 Score=53.77 Aligned_cols=77 Identities=30% Similarity=0.534 Sum_probs=60.3
Q ss_pred CeEEEcCCCCCccHHHHH---HHhhcccceEEEEEecCC------CCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEE
Q 024276 7 RTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~---~~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
+-+||-+|+.....+.+. +.|.+||.|..|.+..+. ....-+||+|...++|..||...+|+.++|+.|++
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 457888998886555544 589999999999885422 12234899999999999999999999999999887
Q ss_pred EecCCC
Q 024276 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.+...+
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776544
No 188
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=96.46 E-value=0.0054 Score=49.71 Aligned_cols=18 Identities=17% Similarity=0.128 Sum_probs=8.7
Q ss_pred CcEEEEEECCHHHHHHHHH
Q 024276 45 PCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~ 63 (270)
+.-.||.|.- +....|+.
T Consensus 173 RT~v~vry~p-e~iACaci 190 (367)
T KOG0835|consen 173 RTDVFVRYSP-ESIACACI 190 (367)
T ss_pred ccceeeecCH-HHHHHHHH
Confidence 4456666653 33334433
No 189
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.44 E-value=0.011 Score=47.44 Aligned_cols=71 Identities=17% Similarity=0.243 Sum_probs=53.9
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCce-EEEEecCCC
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-LRVELAHGG 83 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-l~v~~~~~~ 83 (270)
=|-|-++|+... ..|..+|+.||.|++.....+ -.+-+|.|.+.-+|++||. .||+.|+|.. |=|..+..+
T Consensus 199 WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~n---gNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpCtDk 270 (350)
T KOG4285|consen 199 WVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSN---GNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPCTDK 270 (350)
T ss_pred eEEEeccCccch-hHHHHHHHhhCeeeeeecCCC---CceEEEEecchhHHHHhhh-hcCeeeccceEEeeeecCCH
Confidence 355667776533 568899999999988766433 5689999999999999999 8999998765 445554443
No 190
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.42 E-value=0.018 Score=50.02 Aligned_cols=91 Identities=14% Similarity=0.195 Sum_probs=70.4
Q ss_pred CHHHHHHHHHhcCCcccCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCC
Q 024276 54 NARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLP 133 (270)
Q Consensus 54 ~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~ 133 (270)
|++=...+|....++.++.+-++|...... +.|.+.-+|
T Consensus 146 DvdLI~Evlresp~VqvDekgekVrp~~kR-----------------------------------------cIvilREIp 184 (684)
T KOG2591|consen 146 DVDLIVEVLRESPNVQVDEKGEKVRPNHKR-----------------------------------------CIVILREIP 184 (684)
T ss_pred chHHHHHHHhcCCCceeccCccccccCcce-----------------------------------------eEEEEeecC
Confidence 344445566667777777777777765554 788999999
Q ss_pred CCCCHHHHHHHhhh--cCceeEEEEeeCCCCcEEEEEecChhhHHHHHHh-------cCCcccc
Q 024276 134 SSASWQDLKDHMRK--AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK-------LDDTEFR 188 (270)
Q Consensus 134 ~~~~~~~l~~~f~~--~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~-------l~g~~~~ 188 (270)
..+-.++++.+|.. +-++++|++..+. -=||+|++..||+.|... +.|+.|.
T Consensus 185 ettp~e~Vk~lf~~encPk~iscefa~N~---nWyITfesd~DAQqAykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 185 ETTPIEVVKALFKGENCPKVISCEFAHND---NWYITFESDTDAQQAYKYLREEVKTFQGKPIM 245 (684)
T ss_pred CCChHHHHHHHhccCCCCCceeeeeeecC---ceEEEeecchhHHHHHHHHHHHHHhhcCcchh
Confidence 99999999999966 7788899887765 469999999999999754 4555554
No 191
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.39 E-value=0.015 Score=44.19 Aligned_cols=62 Identities=27% Similarity=0.288 Sum_probs=46.5
Q ss_pred cHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC--CcccCCceEEEEecCCC
Q 024276 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELAHGG 83 (270)
Q Consensus 19 t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~~~~~ 83 (270)
..+.|+++|..|+.+..+..... -+=..|.|.+.++|..|...|+ +..+.|..|+|.++...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s---FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS---FRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT---TTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCC---CCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcccc
Confidence 45789999999999988877643 4568999999999999999999 89999999999998544
No 192
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=96.21 E-value=0.028 Score=40.55 Aligned_cols=54 Identities=15% Similarity=0.249 Sum_probs=44.5
Q ss_pred HHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 140 DLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 140 ~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+|.+.|..||.+.-+++..+ .-+|+|.+-+.|.+|+. ++|.++. |..+.+....
T Consensus 52 ~ll~~~~~~GevvLvRfv~~----~mwVTF~dg~sALaals-~dg~~v~----g~~l~i~LKt 105 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD----TMWVTFRDGQSALAALS-LDGIQVN----GRTLKIRLKT 105 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT----CEEEEESSCHHHHHHHH-GCCSEET----TEEEEEEE--
T ss_pred HHHHHHHhCCceEEEEEeCC----eEEEEECccHHHHHHHc-cCCcEEC----CEEEEEEeCC
Confidence 67888999999988887775 68999999999999998 8999998 8888776643
No 193
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.14 E-value=0.003 Score=53.54 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=63.9
Q ss_pred CCCCeEEEcCCCCCc-cHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDI-REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~-t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.+.|.+.-+|+.. +-++|...|.+||+|.+|.+-.. .--|.|+|.+..+|-.|.. .++..|+++.|+|.|-..
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 456777777777763 56899999999999999998543 4569999999999988888 899999999999999876
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 4
No 194
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=96.04 E-value=0.0035 Score=55.38 Aligned_cols=73 Identities=19% Similarity=0.182 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.-+|||+||...+..+-+..+...||-|..+.... |+|++|..+..+..|+..++...++|+.+.+.....
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q 110 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQ 110 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhh
Confidence 3567999999999999999999999999999887753 999999999999999999999999999988877543
No 195
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=96.03 E-value=0.011 Score=51.22 Aligned_cols=69 Identities=17% Similarity=0.245 Sum_probs=55.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhc--ccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC--cccCCceEEE
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYK--YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRV 77 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~--~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v 77 (270)
.-|.|+|.-||..+-.|+|+.||.. |-++.+|.+..+ ..=||+|++..||+.|.+.|.. ..|-|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N----~nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN----DNWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec----CceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4578999999999999999999984 778999988443 2469999999999999877643 4556666543
No 196
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.89 E-value=0.054 Score=34.93 Aligned_cols=55 Identities=15% Similarity=0.191 Sum_probs=40.9
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g 184 (270)
...+|+ +|..+-..||.++|+.||.|. |..+.+. .|||.....+.|..|+..+.-
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~dT---SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWINDT---SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECTT---EEEEEECCCHHHHHHHHHHTT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcCC---cEEEEeecHHHHHHHHHHhcc
Confidence 345555 999999999999999999985 4444443 899999999999999887754
No 197
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=95.77 E-value=0.012 Score=51.41 Aligned_cols=78 Identities=13% Similarity=0.127 Sum_probs=58.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhh-cCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
....+.|+|.||-..+|.-+|+.++.. .|.|... ..|...-.|||.|.+.++|.....+|||..... ..+..|.+.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~-sNPK~L~ad 517 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIKSHCYVSYSSVEEAAATREALHNVQWPP-SNPKHLIAD 517 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhhcceeEecccHHHHHHHHHHHhccccCC-CCCceeEee
Confidence 355789999999999999999999996 4555444 233333479999999999999999999987651 114555544
Q ss_pred cC
Q 024276 200 RY 201 (270)
Q Consensus 200 ~~ 201 (270)
+.
T Consensus 518 f~ 519 (718)
T KOG2416|consen 518 FV 519 (718)
T ss_pred ec
Confidence 43
No 198
>KOG0835 consensus Cyclin L [General function prediction only]
Probab=95.55 E-value=0.033 Score=45.35 Aligned_cols=12 Identities=0% Similarity=0.125 Sum_probs=6.6
Q ss_pred CCCHHHHHHHhh
Q 024276 135 SASWQDLKDHMR 146 (270)
Q Consensus 135 ~~~~~~l~~~f~ 146 (270)
.+++++|.+++-
T Consensus 212 d~~k~eid~ic~ 223 (367)
T KOG0835|consen 212 DTTKREIDEICY 223 (367)
T ss_pred CCcHHHHHHHHH
Confidence 455666655543
No 199
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.27 E-value=0.039 Score=45.20 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=53.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCc--eeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...++||+||-+.+|++||.+.+...|- +.++++..+... |||+|...+....++.++.|-.++|.
T Consensus 79 rk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iH 150 (498)
T KOG4849|consen 79 RKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIH 150 (498)
T ss_pred ceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceec
Confidence 3478999999999999999998887773 445555555433 69999999999999999988888887
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.22 E-value=0.31 Score=33.70 Aligned_cols=64 Identities=11% Similarity=0.065 Sum_probs=47.4
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCc--EEEEEecChhhHHHHHHhcCCcccc
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g--~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+.+...|+.++.++|..+.+.+- .|..+.+.++...+ .++++|.+.+.|.+-...+||+.+.
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3444445556666667766666654 45567887776543 7999999999999999999999986
No 201
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.13 E-value=0.075 Score=45.18 Aligned_cols=66 Identities=17% Similarity=0.309 Sum_probs=57.5
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcc-cceEEEEEecCCCCCc-EEEEEECCHHHHHHHHHhcCCcccC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKY-GRILDIELKIPPRPPC-YCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~-G~v~~~~~~~~~~~~g-~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
++.|+|=.+|..+|..||..+...+ -.|.+|+++.++.+-. .++|.|.+.++|......+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 7899999999999999999988865 4788999988775544 5789999999999999999998885
No 202
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.98 E-value=0.16 Score=33.45 Aligned_cols=71 Identities=21% Similarity=0.365 Sum_probs=45.7
Q ss_pred EEEEECCHHHHHHHHHhcCC--cccCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcc
Q 024276 48 CFVEFENARDAEDAIRGRDG--YNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEY 125 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (270)
|+|+|.++.-|+..++ +.. ..+++..+.|............ -.........
T Consensus 1 AlITF~e~~VA~~i~~-~~~~~v~l~~~~~~V~v~P~~~~~~~k--------------------------~qv~~~vs~r 53 (88)
T PF07292_consen 1 ALITFEEEGVAQRILK-KKKHPVPLEDCCVRVKVSPVTLGHLQK--------------------------FQVFSGVSKR 53 (88)
T ss_pred CEEEeCcHHHHHHHHh-CCEEEEEECCEEEEEEEEeEecCCceE--------------------------EEEEEcccCC
Confidence 6899999999999887 444 3446666666554332111100 0011223457
Q ss_pred eEEEeCCCCCCCHHHHHHHh
Q 024276 126 RVIVRGLPSSASWQDLKDHM 145 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f 145 (270)
+|.|.|||....+++|++..
T Consensus 54 tVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 54 TVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred EEEEeCCCCCCChhhheeeE
Confidence 99999999999999988753
No 203
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.33 Score=42.75 Aligned_cols=78 Identities=22% Similarity=0.389 Sum_probs=61.1
Q ss_pred CCCCCeEEEcCCCCC-ccHHHHHHHhhcc----cceEEEEEecC-------------CC-------------C-------
Q 024276 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP-------------PR-------------P------- 44 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~-~t~~~L~~~F~~~----G~v~~~~~~~~-------------~~-------------~------- 44 (270)
+..++.|-|-||..+ +..+||.-+|+.| |.|..|.|..+ |. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 467899999999987 8899999999976 58999988331 11 0
Q ss_pred -----------------CcEEEEEECCHHHHHHHHHhcCCcccCC--ceEEEEec
Q 024276 45 -----------------PCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELA 80 (270)
Q Consensus 45 -----------------~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~ 80 (270)
.=||.|+|.+++.|......++|+.|.. ..|-+.+.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 1289999999999999999999999964 44444443
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.98 E-value=0.1 Score=39.55 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=44.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhh-cCceeEEEEe---eCCCC------cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVS---RDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~---~~~~~------g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...|.|.+||+.+|++++.+.+.. ++........ ..... .-|||.|.+.+++..-...++|..+.
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~ 81 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFV 81 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEE
Confidence 468999999999999999987776 5555221211 22111 27999999999999999999998876
No 205
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.62 E-value=0.11 Score=46.23 Aligned_cols=65 Identities=17% Similarity=0.108 Sum_probs=57.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.+.++..++||+|+.+.+..+-++.+...+|.|..+.... |+|++|..+..+..|+..++-..++
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~-----fgf~~f~~~~~~~ra~r~~t~~~~~ 99 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK-----FGFCEFLKHIGDLRASRLLTELNID 99 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh-----hcccchhhHHHHHHHHHHhcccCCC
Confidence 3456678999999999999999999999999998887766 9999999999999999988877775
No 206
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.46 E-value=0.28 Score=42.09 Aligned_cols=73 Identities=15% Similarity=0.146 Sum_probs=54.4
Q ss_pred cceEEEeCCCCCC-CHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 124 EYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
.+.|-+.-.|... +.++|..+|.+||.|..|.+-... --|.|+|.+..+|-+|.. .++..|. ++.|+|.+..
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~--~~a~vTF~t~aeag~a~~-s~~avln----nr~iKl~whn 444 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS--LHAVVTFKTRAEAGEAYA-SHGAVLN----NRFIKLFWHN 444 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch--hhheeeeeccccccchhc-cccceec----CceeEEEEec
Confidence 3445555555444 568899999999999998876652 268999999999977755 6777777 7777777665
Q ss_pred C
Q 024276 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 445 p 445 (526)
T KOG2135|consen 445 P 445 (526)
T ss_pred C
Confidence 3
No 207
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=93.44 E-value=0.058 Score=49.35 Aligned_cols=72 Identities=18% Similarity=0.185 Sum_probs=58.8
Q ss_pred EEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc--CCceEEEEecCCCC
Q 024276 10 YVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF--DGCRLRVELAHGGS 84 (270)
Q Consensus 10 ~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--~g~~l~v~~~~~~~ 84 (270)
++.|.+-..+-.-|-.+|..||.|..+....+ -..|.|+|...+.|..|+..|+|..+ -|-+.+|.+++...
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~---~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~ 375 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRD---LNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLP 375 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccc---ccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccccc
Confidence 34445556777889999999999999877554 45799999999999999999999776 58889999887653
No 208
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.10 E-value=1 Score=36.46 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=58.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCC----------CCCcEEEEEECCHHHHHHH----HHhcCC--c
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP----------RPPCYCFVEFENARDAEDA----IRGRDG--Y 68 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~----------~~~g~afV~f~~~~~a~~A----~~~l~~--~ 68 (270)
.++.|...||..+++-..+...|-.||+|+.|+++... +......+-|-+.+.|... ++.|+. .
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999996543 3356789999999988764 333433 3
Q ss_pred ccCCceEEEEecC
Q 024276 69 NFDGCRLRVELAH 81 (270)
Q Consensus 69 ~~~g~~l~v~~~~ 81 (270)
.+.-..|.+.+..
T Consensus 94 ~L~S~~L~lsFV~ 106 (309)
T PF10567_consen 94 KLKSESLTLSFVS 106 (309)
T ss_pred hcCCcceeEEEEE
Confidence 3556677777664
No 209
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.10 E-value=0.62 Score=39.85 Aligned_cols=65 Identities=11% Similarity=0.183 Sum_probs=57.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCc--EEEEEecChhhHHHHHHhcCCcccc
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g--~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...|.|-.+|..++-.||..++..+- .|.++.++++.... .++|+|.+.++|..-.+.+||..|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCC
Confidence 67899999999999999999998754 57778888876543 7999999999999999999999987
No 210
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.93 E-value=0.31 Score=34.89 Aligned_cols=62 Identities=11% Similarity=0.140 Sum_probs=46.3
Q ss_pred CCcceEEEeCCCCCC----CHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc
Q 024276 122 HSEYRVIVRGLPSSA----SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~----~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
.+-.+|.|.=|..++ +...+-..++.||+|..+.+.-.. .|.|.|++...|..|+.+++...
T Consensus 84 pPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq---savVvF~d~~SAC~Av~Af~s~~ 149 (166)
T PF15023_consen 84 PPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ---SAVVVFKDITSACKAVSAFQSRA 149 (166)
T ss_pred CCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc---eEEEEehhhHHHHHHHHhhcCCC
Confidence 344677776554433 344566777889999988776543 89999999999999999987643
No 211
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=92.73 E-value=0.74 Score=37.31 Aligned_cols=61 Identities=18% Similarity=0.284 Sum_probs=47.6
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...|.|.++|+... ..|..+|++||.|+++... .++++-+|.|.+.-+|.+||. .+|+.|+
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~--~ngNwMhirYssr~~A~KALs-kng~ii~ 257 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP--SNGNWMHIRYSSRTHAQKALS-KNGTIID 257 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC--CCCceEEEEecchhHHHHhhh-hcCeeec
Confidence 45677777776644 4567899999999765544 555699999999999999998 5777776
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=92.63 E-value=0.12 Score=38.06 Aligned_cols=112 Identities=18% Similarity=0.130 Sum_probs=73.4
Q ss_pred CccHHHHHHHhhc-ccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCCCCCCCCCCCCC
Q 024276 17 DIREYEVEDLFYK-YGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRG 95 (270)
Q Consensus 17 ~~t~~~L~~~F~~-~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~ 95 (270)
..+-..|.+.+.. ++....+.+..-+ .++..++|.+++++..++. .....++|..|.++...+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l~--~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~------- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDLG--DNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE------- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEeC--CCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc-------
Confidence 3566666666653 3433344443212 5789999999999999998 566777888888877664311000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCC-CCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 96 GYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
........-|.|.|||.. .+++-+..+.+.+|.+..+......
T Consensus 98 ----------------------~~~~~~~vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~~ 141 (153)
T PF14111_consen 98 ----------------------VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTLK 141 (153)
T ss_pred ----------------------cceeccchhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCCC
Confidence 000112246778899976 5778889999999999888765543
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.44 E-value=0.88 Score=28.19 Aligned_cols=55 Identities=20% Similarity=0.331 Sum_probs=43.3
Q ss_pred CccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEE
Q 024276 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.++-++|+..+..|+- ..|.... .| -||.|.+..+|+++....++..+.+-.|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~d~----tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRDDR----TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEecC----CE-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 3778999999999963 4444443 34 489999999999999999998888777654
No 214
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.52 E-value=0.13 Score=47.19 Aligned_cols=74 Identities=16% Similarity=0.127 Sum_probs=58.8
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..++.|.+-..+-.-|..+|..||.|..+....+-+ .|.|+|.+.+.|..|+++++|+++.. .|...+|.+++-
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N--~alvs~~s~~sai~a~dAl~gkevs~--~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN--MALVSFSSVESAILALDALQGKEVSV--TGAPSRVSFAKT 373 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheeccccc--chhhhhHHHHHHHHhhhhhcCCcccc--cCCceeEEeccc
Confidence 344445555666778999999999999988877654 89999999999999999999998763 266677777763
No 215
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=91.45 E-value=0.086 Score=43.17 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=52.0
Q ss_pred cceEEEeCCCCCCCHHHH---HHHhhhcCceeEEEEeeCCC--C---c--EEEEEecChhhHHHHHHhcCCcccc
Q 024276 124 EYRVIVRGLPSSASWQDL---KDHMRKAGDVCFAEVSRDSE--G---T--YGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l---~~~f~~~g~v~~~~~~~~~~--~---g--~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...+||.+|+..+..+.+ .+.|.+||.|..+.+..+.. . + -++|+|+..++|..||...+|..+.
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~d 151 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDD 151 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhh
Confidence 357888889888766655 46788899998888777651 1 1 6899999999999999999998877
No 216
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=91.20 E-value=1.2 Score=27.67 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024276 134 SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..++-++++..+..|+-. .+..+.. | -||.|.+..+|+++....+|..+.
T Consensus 10 ~~~~v~d~K~~Lr~y~~~---~I~~d~t-G-fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRWD---RIRDDRT-G-FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCcc---eEEecCC-E-EEEEECChHHHHHHHHhcCCCEEE
Confidence 456788999999998632 3333332 2 589999999999999999998876
No 217
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=90.40 E-value=1.3 Score=33.85 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=43.0
Q ss_pred CCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC--CccccCcccccceeeecCC
Q 024276 136 ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~~~~~~~~i~v~~~~ 202 (270)
...+.|+++|..++.+..+.....- +-..|.|.+.+.|..|...|+ +..+. +..+++.+..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sF--rRi~v~f~~~~~A~~~r~~l~~~~~~~~----g~~l~~yf~~ 69 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSF--RRIRVVFESPESAQRARQLLHWDGTSFN----GKRLRVYFGQ 69 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTT--TEEEEE-SSTTHHHHHHHTST--TSEET----TEE-EEE---
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCC--CEEEEEeCCHHHHHHHHHHhcccccccC----CCceEEEEcc
Confidence 3457899999999988766555532 368999999999999999999 88887 7777777664
No 218
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=89.50 E-value=0.18 Score=41.23 Aligned_cols=11 Identities=64% Similarity=0.685 Sum_probs=4.0
Q ss_pred CCCCCCCCCCC
Q 024276 237 RSVSRSMSASP 247 (270)
Q Consensus 237 rsr~rs~~r~~ 247 (270)
+|+++++.+++
T Consensus 389 RSrsrsre~s~ 399 (453)
T KOG2888|consen 389 RSRSRSREPSP 399 (453)
T ss_pred cccccccCCCc
Confidence 33333333333
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=88.57 E-value=1.5 Score=35.32 Aligned_cols=46 Identities=28% Similarity=0.373 Sum_probs=35.3
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccce-EEEEEecCCCCCcEEEEEECCH
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRI-LDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v-~~~~~~~~~~~~g~afV~f~~~ 55 (270)
.-|+++||+.++--.||+..+.+.|.+ ..+.+. .+.+-||+.|.+.
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswk---g~~~k~flh~~~~ 377 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISWK---GHFGKCFLHFGNR 377 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEeee---cCCcceeEecCCc
Confidence 459999999999999999998877633 444443 3377899999764
No 220
>KOG2888 consensus Putative RNA binding protein [General function prediction only]
Probab=88.03 E-value=0.33 Score=39.72 Aligned_cols=9 Identities=0% Similarity=0.409 Sum_probs=3.9
Q ss_pred HHHHHhhhc
Q 024276 140 DLKDHMRKA 148 (270)
Q Consensus 140 ~l~~~f~~~ 148 (270)
+|.+-|+++
T Consensus 228 qId~~ie~r 236 (453)
T KOG2888|consen 228 QIDEKIEER 236 (453)
T ss_pred HHHHHHHhc
Confidence 344444443
No 221
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.74 E-value=2.1 Score=27.18 Aligned_cols=59 Identities=8% Similarity=0.216 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHhhhcCc-----eeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 134 SSASWQDLKDHMRKAGD-----VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~-----v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..++..+|..++...+. |-.+.+... |+||+.... .|..++..|++..+. ++.+.++.+
T Consensus 11 dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~----~S~vev~~~-~a~~v~~~l~~~~~~----gk~v~ve~A 74 (74)
T PF03880_consen 11 DGLTPRDIVGAICNEAGIPGRDIGRIDIFDN----FSFVEVPEE-VAEKVLEALNGKKIK----GKKVRVERA 74 (74)
T ss_dssp GT--HHHHHHHHHTCTTB-GGGEEEEEE-SS-----EEEEE-TT--HHHHHHHHTT--SS----S----EEE-
T ss_pred cCCCHHHHHHHHHhccCCCHHhEEEEEEeee----EEEEEECHH-HHHHHHHHhcCCCCC----CeeEEEEEC
Confidence 45677888888877654 344555553 899987754 888999999999998 888887653
No 222
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=87.69 E-value=0.57 Score=35.01 Aligned_cols=75 Identities=20% Similarity=0.245 Sum_probs=54.3
Q ss_pred CCeEEEcCCCCCcc-----HHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCc-eEEEEe
Q 024276 6 SRTIYVGNLPSDIR-----EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRVEL 79 (270)
Q Consensus 6 s~~l~V~nl~~~~t-----~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l~v~~ 79 (270)
..++.+.+|+..+- ......+|-+|-+.....+... .+..-|.|.+++.|..|...+++..|.|+ .++..+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrs---frrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRS---FRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHh---hceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 45688888877632 2334456666665555555432 55677899999999999999999999888 888888
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
++..
T Consensus 87 aQ~~ 90 (193)
T KOG4019|consen 87 AQPG 90 (193)
T ss_pred ccCC
Confidence 8755
No 223
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=85.28 E-value=1 Score=31.48 Aligned_cols=59 Identities=17% Similarity=0.247 Sum_probs=31.0
Q ss_pred eEEEcCCCCC---------ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCH-HHHHHHHHhcCC
Q 024276 8 TIYVGNLPSD---------IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA-RDAEDAIRGRDG 67 (270)
Q Consensus 8 ~l~V~nl~~~---------~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~-~~a~~A~~~l~~ 67 (270)
++.|-|++.. ++.+.|.+.|..|.+++-.-+.......+++.|+|... .--..|+. |.+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~-l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR-LEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH-HHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH-HHH
Confidence 4667777554 35678999999998776444433345578999999754 44444655 443
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.35 E-value=2.8 Score=35.51 Aligned_cols=56 Identities=14% Similarity=0.282 Sum_probs=46.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+--+.|-|-++|.....+||..+|+.|+. =-+|+++.+ ..||..|.....|..||.
T Consensus 389 dlpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd----thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 389 DLPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD----THALAVFSSVNRAAEALT 445 (528)
T ss_pred cccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec----ceeEEeecchHHHHHHhh
Confidence 45688999999999999999999999974 233455543 479999999999999999
No 225
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=83.50 E-value=5.8 Score=25.91 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=41.9
Q ss_pred EEEcCCCCCccHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc
Q 024276 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 9 l~V~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
-|+--+++.++..+|++.++. || +|..|..........=|||.+...++|......+
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 344456788999999998886 56 7777777554444557999999999988865533
No 226
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=82.05 E-value=0.47 Score=37.87 Aligned_cols=67 Identities=18% Similarity=0.359 Sum_probs=46.6
Q ss_pred CCCCeEEEcCCCCC------------ccHHHHHHHhhcccceEEEEEec--------CCCC-----CcEE---------E
Q 024276 4 RFSRTIYVGNLPSD------------IREYEVEDLFYKYGRILDIELKI--------PPRP-----PCYC---------F 49 (270)
Q Consensus 4 ~~s~~l~V~nl~~~------------~t~~~L~~~F~~~G~v~~~~~~~--------~~~~-----~g~a---------f 49 (270)
+-..||++.+||.. -+++-|...|..||.|..|.|.. +++. .||+ |
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeay 226 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAY 226 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHH
Confidence 44568999999874 35678999999999999988832 2222 3343 3
Q ss_pred EEECCHHHHHHHHHhcCCccc
Q 024276 50 VEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~ 70 (270)
|+|...-....|+..|.|+.|
T Consensus 227 vqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 227 VQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHhHHHHHHHHhcchH
Confidence 566666666677777777665
No 227
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=81.66 E-value=8.2 Score=24.75 Aligned_cols=55 Identities=13% Similarity=0.185 Sum_probs=40.5
Q ss_pred EEEcCCCCCccHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 9 l~V~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-|+-.++..++..+|++.++. || +|..|.........-=|||.+...+.|...-.
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~ 72 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIAS 72 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHH
Confidence 455567889999999988886 55 67777765443344569999998888877544
No 228
>KOG3580 consensus Tight junction proteins [Signal transduction mechanisms]
Probab=80.21 E-value=11 Score=33.90 Aligned_cols=39 Identities=23% Similarity=0.315 Sum_probs=26.9
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 122 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.....+.|.+++. +++..-.-+++.+.|++..|.+....
T Consensus 59 enDrvvMVNGvsMenv~haFAvQqLrksgK~A~ItvkRpr 98 (1027)
T KOG3580|consen 59 ENDRVVMVNGVSMENVLHAFAVQQLRKSGKVAAITVKRPR 98 (1027)
T ss_pred cCCeEEEEcCcchhhhHHHHHHHHHHhhccceeEEecccc
Confidence 3456788888774 45555566777889998877766543
No 229
>KOG4246 consensus Predicted DNA-binding protein, contains SAP domain [General function prediction only]
Probab=79.23 E-value=0.94 Score=41.84 Aligned_cols=7 Identities=14% Similarity=0.259 Sum_probs=3.0
Q ss_pred EEEEEEC
Q 024276 47 YCFVEFE 53 (270)
Q Consensus 47 ~afV~f~ 53 (270)
|+.+...
T Consensus 61 y~~t~~~ 67 (1194)
T KOG4246|consen 61 YGSTSLS 67 (1194)
T ss_pred ccccchh
Confidence 4444443
No 230
>PF14893 PNMA: PNMA
Probab=75.86 E-value=3.5 Score=34.61 Aligned_cols=76 Identities=18% Similarity=0.139 Sum_probs=43.8
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhc-ccceEEEEEe----cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELK----IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~-~G~v~~~~~~----~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
=+.-+.|.|.+||.++++++|++.+.. +-+.-.+.+. .-......|+|+|...-+-...=.. +.-.|-+-+|
T Consensus 15 ~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~n~~~iP~~---i~g~gg~W~V 91 (331)
T PF14893_consen 15 VDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDVNYSLIPRE---IPGKGGPWRV 91 (331)
T ss_pred cChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccccchhhCchh---cCCCCCceEE
Confidence 366789999999999999999988764 2222223331 1112245788998754332111111 1224556666
Q ss_pred EecC
Q 024276 78 ELAH 81 (270)
Q Consensus 78 ~~~~ 81 (270)
-+..
T Consensus 92 v~~p 95 (331)
T PF14893_consen 92 VFKP 95 (331)
T ss_pred EecC
Confidence 5544
No 231
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=75.23 E-value=10 Score=30.75 Aligned_cols=49 Identities=16% Similarity=0.171 Sum_probs=38.1
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChh
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPE 173 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~ 173 (270)
..-|+++||+.++.-.||+..+.+.+-+. +.+......+.||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCc-eeEeeecCCcceeEecCCcc
Confidence 45699999999999999999998877543 44445555568999997643
No 232
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=74.69 E-value=17 Score=22.17 Aligned_cols=47 Identities=13% Similarity=0.220 Sum_probs=32.0
Q ss_pred HHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCc
Q 024276 20 EYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 20 ~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
-.+|-++|.+.| .|..+.....+. +++.-+.+.+.+.|.+++. -+|+
T Consensus 15 La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~-~~G~ 62 (66)
T cd04908 15 LAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALK-EAGF 62 (66)
T ss_pred HHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHH-HCCC
Confidence 467888888776 778887755433 4555666777777887777 3444
No 233
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=74.62 E-value=21 Score=23.34 Aligned_cols=57 Identities=14% Similarity=0.087 Sum_probs=42.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhh-cC-ceeEEEEeeCCCC-cEEEEEecChhhHHHHHHhc
Q 024276 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l 182 (270)
.-|+-..+...+..+|++.++. || .|..+....-..+ .-|||.+....+|.+...++
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 4555567889999999999988 56 5666766555443 48999999999998876654
No 234
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=74.32 E-value=3.5 Score=34.74 Aligned_cols=65 Identities=22% Similarity=0.380 Sum_probs=49.2
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEE-ecC-----CCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL-KIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~-~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
-+.|.|.+||+..++++|.+-...|-.-.++.. ... ....+.|||.|..+++.......++|+.|
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 467889999999999999988887654333332 211 12357899999999999999998988665
No 235
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=74.07 E-value=0.43 Score=41.87 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=54.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCce
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.+|+|+|.||+++++-++|..++..+--+..+.+... .....++.|.|.---....|+.+||++-+.-..
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 3689999999999999999999998766666665321 233567889999888888888888887665443
No 236
>KOG2812 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.36 E-value=6.1 Score=32.95 Aligned_cols=9 Identities=56% Similarity=0.730 Sum_probs=3.8
Q ss_pred CCCCCCCcC
Q 024276 258 RSVSPDKVR 266 (270)
Q Consensus 258 rsrs~~r~r 266 (270)
++|+|.+.|
T Consensus 87 ~sRs~sr~r 95 (426)
T KOG2812|consen 87 RSRSPSRDR 95 (426)
T ss_pred cccCCCccc
Confidence 444444433
No 237
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.05 E-value=11 Score=32.20 Aligned_cols=56 Identities=9% Similarity=0.037 Sum_probs=46.3
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCce-eEEEEeeCCCCcEEEEEecChhhHHHHHHh
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 181 (270)
-...|-|.++|.....+||...|+.|+.- .+|+++.+. .||-.|.+...|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt---halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT---HALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc---eeEEeecchHHHHHHhhc
Confidence 34688999999999999999999999753 346666665 799999999999999874
No 238
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=70.49 E-value=21 Score=30.54 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCCCeEEEcCCCCC-ccHHHHHHHhhcc----cceEEEEEecC
Q 024276 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKY----GRILDIELKIP 41 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~-~t~~~L~~~F~~~----G~v~~~~~~~~ 41 (270)
+.++..|-|-||..+ +...+|..+|+.| |+|..|.|..+
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iyps 186 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPS 186 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechh
Confidence 567889999999887 8889999999866 57777877543
No 239
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=70.34 E-value=12 Score=22.78 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=16.1
Q ss_pred HHHHHHhhcccceEEEEE
Q 024276 21 YEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~ 38 (270)
++|+++|+.+|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 689999999999987777
No 240
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=69.73 E-value=27 Score=22.43 Aligned_cols=57 Identities=14% Similarity=0.062 Sum_probs=42.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhhh-cC-ceeEEEEeeCCCC-cEEEEEecChhhHHHHHHhc
Q 024276 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l 182 (270)
.-|+-.++...+..+|+..++. |+ .|..+....-+.+ .-|||.+.....|.+...++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 4566677899999999999988 55 5666665544433 48999999998888876654
No 241
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=66.46 E-value=3.5 Score=33.13 Aligned_cols=77 Identities=13% Similarity=0.190 Sum_probs=50.5
Q ss_pred ceEEEeCCCCC------------CCHHHHHHHhhhcCceeEEEEeeCC---------CCc--------------EEEEEe
Q 024276 125 YRVIVRGLPSS------------ASWQDLKDHMRKAGDVCFAEVSRDS---------EGT--------------YGVVDY 169 (270)
Q Consensus 125 ~~l~v~nl~~~------------~~~~~l~~~f~~~g~v~~~~~~~~~---------~~g--------------~afv~f 169 (270)
.+|++.++|-. .+++-|...|+.||.|..+.|+.-. ..| -|||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 57777777743 3567799999999999988876432 111 245555
Q ss_pred cChhhHHHHHHhcCCccccCccccc----ceeeecC
Q 024276 170 TNPEDMKYAIRKLDDTEFRNPWARG----RITVKRY 201 (270)
Q Consensus 170 ~~~~~a~~a~~~l~g~~~~~~~~~~----~i~v~~~ 201 (270)
-...--..|+..|.|+.+.....+. .++|.++
T Consensus 230 meykgfa~amdalr~~k~akk~d~~ffqanvkvdfd 265 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFD 265 (445)
T ss_pred HHHHhHHHHHHHHhcchHHhhcCCcccccccccccc
Confidence 5556667788888888776444444 4455554
No 242
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.34 E-value=27 Score=31.43 Aligned_cols=68 Identities=19% Similarity=0.207 Sum_probs=53.8
Q ss_pred CCCcceEEEeCCCCC-CCHHHHHHHhhhc----CceeEEEEeeCC-------------C-------------------C-
Q 024276 121 RHSEYRVIVRGLPSS-ASWQDLKDHMRKA----GDVCFAEVSRDS-------------E-------------------G- 162 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~-~~~~~l~~~f~~~----g~v~~~~~~~~~-------------~-------------------~- 162 (270)
...+..|.|.||.+. +...+|.-+|..| |.|..|.|.... + .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 355789999999976 5677888888765 578888776431 1 0
Q ss_pred ------------------cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 163 ------------------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 163 ------------------g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.||.|+|.+.+.|......++|.++.
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfE 294 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFE 294 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceec
Confidence 18999999999999999999999987
No 243
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=66.29 E-value=20 Score=23.56 Aligned_cols=50 Identities=18% Similarity=0.189 Sum_probs=32.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
+...-|||+|++..+-+.-...+.+..+.=.-+-+..+....||+|-.+-
T Consensus 23 Ei~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~G 72 (86)
T PF09707_consen 23 EIRPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTLG 72 (86)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEeC
Confidence 45667999999988776555555554433333333444557899998773
No 244
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=65.83 E-value=24 Score=20.47 Aligned_cols=42 Identities=17% Similarity=0.208 Sum_probs=30.1
Q ss_pred HHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHH
Q 024276 21 YEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
.++-++|.+.| .|..+.+.......+...+.+.+.+.|.+++
T Consensus 13 ~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 13 AEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 45667777766 7777777554445677788888988887765
No 245
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=65.05 E-value=15 Score=30.81 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=24.9
Q ss_pred EEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 48 CFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 48 afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
|||+|.++.+|..|++.+.... ...+.+..+.++
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP 34 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEP 34 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCc
Confidence 7999999999999999554333 345567666544
No 246
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=64.61 E-value=71 Score=29.74 Aligned_cols=60 Identities=10% Similarity=0.085 Sum_probs=46.2
Q ss_pred CccHHHHHHHhhcccc-----eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 17 DIREYEVEDLFYKYGR-----ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G~-----v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+++.+|..++..-+. |-.|.|. ..|.||+.... .|...+..|++..+.|++|.|+.+..
T Consensus 498 ~~~~~~~~~~i~~~~~~~~~~ig~i~i~-----~~~s~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (629)
T PRK11634 498 GVEVRHIVGAIANEGDISSRYIGNIKLF-----ASHSTIELPKG-MPGEVLQHFTRTRILNKPMNMQLLGD 562 (629)
T ss_pred CCCHHHHHHHHHhhcCCChhhCCcEEEe-----CCceEEEcChh-hHHHHHHHhccccccCCceEEEECCC
Confidence 3888888888876553 4445555 45899998754 47788888999999999999998753
No 247
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=64.00 E-value=12 Score=28.20 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=36.9
Q ss_pred ccHHHHHHHhhc-ccceEEEEEecC--C--CCCcEEEEEECCHHHHHHHHHhcCCcccCCceE
Q 024276 18 IREYEVEDLFYK-YGRILDIELKIP--P--RPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 18 ~t~~~L~~~F~~-~G~v~~~~~~~~--~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (270)
.|+++|..+..- -|.+..|.+... + ..+|-.||+|.+.+.|...++ -+.....-..|
T Consensus 118 ~td~ql~~l~qw~~~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~-~~e~~~~e~el 179 (205)
T KOG4213|consen 118 ITDDQLDDLNQWASGKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD-THEEKGAETEL 179 (205)
T ss_pred CCHHHHHHHHHHhcccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh-hhhhhccchHH
Confidence 455555444331 178999988443 2 457899999999999999887 34444333333
No 248
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=61.65 E-value=6.7 Score=30.82 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=29.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
-+..+||+-|||..+|++.|..+.+++|.+..+.+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 35678999999999999999999999996655433
No 249
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=61.11 E-value=20 Score=23.28 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=23.9
Q ss_pred CCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024276 41 PPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
.+..+||-|||=.+++++..|+..+.+...
T Consensus 40 ~~~lkGyIyVEA~~~~~V~~ai~gi~~i~~ 69 (84)
T PF03439_consen 40 PDSLKGYIYVEAERESDVKEAIRGIRHIRG 69 (84)
T ss_dssp -TTSTSEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred eCCCceEEEEEeCCHHHHHHHHhcccceee
Confidence 345699999999999999999998876543
No 250
>KOG2146 consensus Splicing coactivator SRm160/300, subunit SRm160 (contains PWI domain) [RNA processing and modification; General function prediction only]
Probab=60.89 E-value=24 Score=28.72 Aligned_cols=30 Identities=17% Similarity=0.238 Sum_probs=13.0
Q ss_pred EEEECCHHHHHHHHHhcCC-cccCCceEEEE
Q 024276 49 FVEFENARDAEDAIRGRDG-YNFDGCRLRVE 78 (270)
Q Consensus 49 fV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~ 78 (270)
+|-|++.--++-.+..|.. ..++-+.|.|.
T Consensus 56 ilgfEDdVViefvynqLee~k~ldpkkmQiN 86 (354)
T KOG2146|consen 56 ILGFEDDVVIEFVYNQLEEAKNLDPKKMQIN 86 (354)
T ss_pred hhccccchhHHHHHHHHhhhcCCCchheeee
Confidence 3445544444444444433 33344444444
No 251
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=60.19 E-value=40 Score=24.57 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=35.6
Q ss_pred EEcCCCCCccHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHH
Q 024276 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAI 62 (270)
Q Consensus 10 ~V~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~ 62 (270)
|+--+...++..+|.+.++. |+ .|..|.........-=|||.+....+|....
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva 139 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVA 139 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 33346678899999988886 54 6666666443333446999998777765443
No 252
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=58.54 E-value=5 Score=26.48 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=20.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhh
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFY 28 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~ 28 (270)
..++|.|.|||....+++|++.++
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 578999999999999999987654
No 253
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.84 E-value=2.3 Score=36.40 Aligned_cols=76 Identities=7% Similarity=-0.137 Sum_probs=55.9
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+...++..||...++++|.-+|..||.|..+.+.. ++...-.+||.-.+ .+|..+|..+-...++|..++|..+..
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~~~ 81 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVSPS 81 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcCch
Confidence 45677889999999999999999999998887732 34445677776654 345556665666777788887777653
No 254
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=53.60 E-value=32 Score=23.13 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=30.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCH
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
+...-|||++++..+-+.--..+-+.++.=.-+-+..+....||+|-++-+.
T Consensus 25 Ev~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 25 EVRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecCCC
Confidence 4566799999988776544444444443312222234445569998887643
No 255
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=53.17 E-value=18 Score=30.75 Aligned_cols=64 Identities=23% Similarity=0.424 Sum_probs=49.0
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCc-eeEEEEeeCCCC------cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~------g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
..+.|..||+..++.+|.+....+-. +.+..+.....+ +.|||.|..+++...-...++|..+.
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 67889999999999999888877653 333444432111 37999999999999999999998775
No 256
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=52.76 E-value=82 Score=22.44 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=50.1
Q ss_pred CCCeEEEcCCCCC---ccHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 5 FSRTIYVGNLPSD---IREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~s~~l~V~nl~~~---~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+.-.|.|...... .+...+.+++..-| .++.+... .+...|.|.++++-.+|.+.|....=++-.|.+..+
T Consensus 34 edpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~ 108 (127)
T PRK10629 34 QESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDD 108 (127)
T ss_pred CCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecC
Confidence 3456777766433 56678888888776 45555543 346889999999999999888765555556666655
Q ss_pred C
Q 024276 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 109 p 109 (127)
T PRK10629 109 N 109 (127)
T ss_pred C
Confidence 4
No 257
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=51.69 E-value=3.2 Score=36.74 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=50.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcccc
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
++.|++.|+++.++-++|..+|..+.-+..+.+-..... .+.+|.|.---....|..+||+..+.
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 578999999999999999999999877655544433221 27899998877778888888877665
No 258
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=51.06 E-value=51 Score=19.53 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=41.1
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCH----HHHHHHHHh
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA----RDAEDAIRG 64 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 64 (270)
|+.|.||.-.--...|.+.+...-.|..+.+-.. .+.+-|.|... ++..++|..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~---~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLE---TKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECC---CCEEEEEEecCCCCHHHHHHHHHH
Confidence 6788888888778889999998888888888543 56788888744 555666653
No 259
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=50.86 E-value=54 Score=20.38 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=40.9
Q ss_pred HHHHHHhhccc-ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 21 YEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++|.+-|...| +|..|.-+. ++.+....||+.+...+...++. =..+++..|.|+.....
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~~---Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIYK---IKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCccccceee---hHhhCCeEEEEecCCCC
Confidence 56778888777 666665533 35566788899887766444433 35678899999876643
No 260
>KOG3869 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.85 E-value=4.7 Score=34.39 Aligned_cols=7 Identities=71% Similarity=0.615 Sum_probs=2.7
Q ss_pred CCCCCCC
Q 024276 257 SRSVSPD 263 (270)
Q Consensus 257 srsrs~~ 263 (270)
+|++||.
T Consensus 293 srsrS~~ 299 (450)
T KOG3869|consen 293 SRSRSPL 299 (450)
T ss_pred hcccCcc
Confidence 3344433
No 261
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=50.23 E-value=98 Score=22.60 Aligned_cols=56 Identities=14% Similarity=0.099 Sum_probs=40.2
Q ss_pred eEEEeCCCCCCCHHHHHHHhhh-cC-ceeEEEEeeCCCC-cEEEEEecChhhHHHHHHh
Q 024276 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~ 181 (270)
..|+..+....+..+|++.++. |+ .|..|..+.-+.+ .-|||.+....+|......
T Consensus 83 N~yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 83 NTLVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 5666667888999999999987 55 5666665554443 3899999888877665544
No 262
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=49.51 E-value=48 Score=20.72 Aligned_cols=58 Identities=17% Similarity=0.236 Sum_probs=36.6
Q ss_pred HHHHHHhhhcC-ceeEEEEeeCCCCc----EEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 139 QDLKDHMRKAG-DVCFAEVSRDSEGT----YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 139 ~~l~~~f~~~g-~v~~~~~~~~~~~g----~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
++|.+.|..+| .+.++..+...+++ .-+|+.....+... -|+=+.++ +..+.|+...+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg----~~~V~VEr~~k 64 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLG----GQRVTVERPHK 64 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhC----CeeEEEecCcc
Confidence 46888899988 67778777766542 56666655433322 23444444 77777776654
No 263
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=48.90 E-value=69 Score=20.45 Aligned_cols=63 Identities=14% Similarity=0.242 Sum_probs=42.0
Q ss_pred eEEEcCCCCCccHHHHHHHhhccc----ceEEEEEe----cCCCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYG----RILDIELK----IPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G----~v~~~~~~----~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.|...+||..+|.++|..+..... ....|.++ .....+-||+.+=.+++++.++-. ..|+.++
T Consensus 2 ymver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~-~aG~p~d 72 (77)
T PF14026_consen 2 YMVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHAR-RAGLPAD 72 (77)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHH-HcCCCcc
Confidence 456778998899999988776432 11233332 223447788888889999988887 3465543
No 264
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=48.23 E-value=16 Score=19.56 Aligned_cols=16 Identities=19% Similarity=0.403 Sum_probs=10.2
Q ss_pred CCccHHHHHHHhhccc
Q 024276 16 SDIREYEVEDLFYKYG 31 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~G 31 (270)
.++++++|+++|.+.+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998754
No 265
>PF12091 DUF3567: Protein of unknown function (DUF3567); InterPro: IPR021951 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 90 amino acids in length. This protein has a conserved EIVDK sequence motif.
Probab=47.42 E-value=23 Score=23.04 Aligned_cols=17 Identities=12% Similarity=0.220 Sum_probs=10.9
Q ss_pred CCCCHHHHHHHhhhcCc
Q 024276 134 SSASWQDLKDHMRKAGD 150 (270)
Q Consensus 134 ~~~~~~~l~~~f~~~g~ 150 (270)
...+.+++.+++..|..
T Consensus 60 ~~Pt~EevDdfL~~y~~ 76 (85)
T PF12091_consen 60 SEPTQEEVDDFLGGYDA 76 (85)
T ss_pred cCCCHHHHHHHHHHHHH
Confidence 44566777777776643
No 266
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=46.58 E-value=45 Score=29.92 Aligned_cols=59 Identities=19% Similarity=0.245 Sum_probs=43.4
Q ss_pred EEcCCCCCcc---HHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceE
Q 024276 10 YVGNLPSDIR---EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRL 75 (270)
Q Consensus 10 ~V~nl~~~~t---~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l 75 (270)
+||||+.-.. ...|..+=.+||+|-.+.+- ..-.|--.+.+.|+.|+. -++..+.+++.
T Consensus 36 iIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG------~~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG------SVPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCCchhHHHHHHHHHhCCeEEEEec------CceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 4667665433 24455555689999988772 224778889999999999 78899999986
No 267
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=43.81 E-value=68 Score=26.39 Aligned_cols=55 Identities=7% Similarity=0.058 Sum_probs=45.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC-----------CcEEEEEecChhhHHHH
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----------GTYGVVDYTNPEDMKYA 178 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----------~g~afv~f~~~~~a~~a 178 (270)
++.|...|+..+++--.+...|.+||+|+.+.++.+.. .....+-|-+.+.+..-
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdF 80 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDF 80 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHH
Confidence 46788999999999999999999999999999988761 12778888888777544
No 268
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=43.25 E-value=1.3e+02 Score=27.50 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=31.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeC
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
..+..+|+.+|..++.++.-.++....-..+.+.+++.
T Consensus 299 l~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rp 336 (621)
T COG0445 299 LDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRP 336 (621)
T ss_pred CCCceEecCcccccCCHHHHHHHHHhCcccccceeecc
Confidence 34579999999999999988888888888888888774
No 269
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=42.79 E-value=86 Score=19.80 Aligned_cols=44 Identities=18% Similarity=0.213 Sum_probs=30.2
Q ss_pred HHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024276 139 QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 139 ~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 183 (270)
.++.+.+..+| +.-..+.-...+++.|+.+.+.+.+.++++.+.
T Consensus 37 ~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 45677777888 444555444335588888889988888877663
No 270
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=42.20 E-value=65 Score=21.22 Aligned_cols=50 Identities=16% Similarity=0.202 Sum_probs=28.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhc-ccceEEEEE-ecCCCCCcEEEEEECC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIEL-KIPPRPPCYCFVEFEN 54 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~-~G~v~~~~~-~~~~~~~g~afV~f~~ 54 (270)
+...-|||++++..+-+.--..+-+. .+. -.+.+ ..+....||+|-++-+
T Consensus 23 Ev~~GVyVg~~s~rVRe~lW~~v~~~~~~~-G~avm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 23 EPRAGVYVGGVSASVRERIWDYLAQHCPPK-GSLVITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred ecCCCcEEcCCCHHHHHHHHHHHHHhCCCC-ccEEEEEeCCCCCCcEEEecCC
Confidence 45667999999887765433333333 222 22223 3445567888877654
No 271
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=41.95 E-value=37 Score=21.26 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.4
Q ss_pred cEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 46 CYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 46 g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+++|.|.+..+|.+|-+.|...-+.
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~ 27 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIP 27 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCc
Confidence 47899999999999999877765543
No 272
>PF15063 TC1: Thyroid cancer protein 1
Probab=41.46 E-value=17 Score=23.03 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=20.9
Q ss_pred EEEcCCCCCccHHHHHHHhhcccce
Q 024276 9 IYVGNLPSDIREYEVEDLFYKYGRI 33 (270)
Q Consensus 9 l~V~nl~~~~t~~~L~~~F~~~G~v 33 (270)
--+.||=.+++.++|..||..-|..
T Consensus 28 kasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 28 KASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred hhhhhhhhccCHHHHHHHHHHccch
Confidence 3467888899999999999998853
No 273
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.01 E-value=27 Score=27.23 Aligned_cols=30 Identities=30% Similarity=0.593 Sum_probs=17.8
Q ss_pred HHHHHHhh-cccceEEEEEecCCCCCcEEEEEECCH
Q 024276 21 YEVEDLFY-KYGRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 21 ~~L~~~F~-~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
++|.+.|. .||. ...+...+.||||+|.+-
T Consensus 89 edL~~EF~~~~~~-----~~~~~~~RPY~FieFD~~ 119 (216)
T KOG0862|consen 89 EDLAQEFDKSYGK-----NIIQPASRPYAFIEFDTF 119 (216)
T ss_pred HHHHHHHHHhccc-----ccCCccCCCeeEEehhHH
Confidence 45555554 3443 122334588999999864
No 274
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=40.00 E-value=1e+02 Score=27.78 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcC
Q 024276 20 EYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 20 ~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
--+|..+|. .+|-|..+.+... .......++.|.+.++|..|+..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHH
Confidence 346777776 6889998888443 3335677889999999999987653
No 275
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=39.51 E-value=1.2e+02 Score=20.39 Aligned_cols=50 Identities=14% Similarity=0.224 Sum_probs=29.8
Q ss_pred CCCCccHHHHHHHhhc-------c-cceEEEEE--------ecCCCCCc-EEEEEECCHHHHHHHHH
Q 024276 14 LPSDIREYEVEDLFYK-------Y-GRILDIEL--------KIPPRPPC-YCFVEFENARDAEDAIR 63 (270)
Q Consensus 14 l~~~~t~~~L~~~F~~-------~-G~v~~~~~--------~~~~~~~g-~afV~f~~~~~a~~A~~ 63 (270)
|.++++++++..+... . |.|..+.- ...+...| |.++.|.-+.++...++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~ele 80 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLE 80 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHH
Confidence 4566677766655543 3 46655543 11233344 68889987777777665
No 276
>PF01071 GARS_A: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; InterPro: IPR020561 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the A-domain of the enzyme, and is related to the ATP-grasp domain of biotin carboxylase/carbamoyl phosphate synthetase.; PDB: 1GSO_A 3LP8_A 2IP4_A 1VKZ_A 2QK4_A 2XD4_A 2XCL_A 3MJF_A 2YRW_A 2YS6_A ....
Probab=39.47 E-value=1e+02 Score=23.78 Aligned_cols=48 Identities=15% Similarity=0.038 Sum_probs=34.8
Q ss_pred ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024276 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+.++..++...++... +.|+.++-..|-+.+...+.++|..|+..+-
T Consensus 24 ~~~~~A~~~l~~~~~p~-~ViKadGla~GKGV~i~~~~~eA~~~l~~~~ 71 (194)
T PF01071_consen 24 TDYEEALEYLEEQGYPY-VVIKADGLAAGKGVVIADDREEALEALREIF 71 (194)
T ss_dssp SSHHHHHHHHHHHSSSE-EEEEESSSCTTTSEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCCc-eEEccCCCCCCCEEEEeCCHHHHHHHHHHhc
Confidence 35677778777766433 5667777666666777899999999997763
No 277
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=37.73 E-value=22 Score=25.82 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=28.1
Q ss_pred EEEcCCCCC-ccHHHHHHHhhcccceEEEEEecC
Q 024276 9 IYVGNLPSD-IREYEVEDLFYKYGRILDIELKIP 41 (270)
Q Consensus 9 l~V~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~ 41 (270)
|.|.|||.. .+++-|.++.+.+|++..+.....
T Consensus 107 Vri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 107 VRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 667899998 788889999999999999987543
No 278
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=37.41 E-value=50 Score=26.78 Aligned_cols=32 Identities=28% Similarity=0.176 Sum_probs=24.6
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEE
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
-...|+|||+++|-.-|..++...-.+....+
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~ 127 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVL 127 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEE
Confidence 36789999999999999999987544433333
No 279
>PF08442 ATP-grasp_2: ATP-grasp domain; InterPro: IPR013650 The ATP-grasp superfamily currently includes 17 groups of enzymes, catalyzing ATP-dependent ligation of a carboxylate containing molecule to an amino or thiol group-containing molecule []. They contribute predominantly to macromolecular synthesis. ATP-hydrolysis is used to activate a substrate. For example, DD-ligase transfers phosphate from ATP to D-alanine on the first step of catalysis. On the second step the resulting acylphosphate is attacked by a second D-alanine to produce a DD dipeptide following phosphate elimination []. The ATP-grasp domain contains three conserved motifs, corresponding to the phosphate binding loop and the Mg(2+) binding site []. The fold is characterised by two alpha-beta subdomains that grasp the ATP molecule between them. Each subdomain provides a variable loop that forms a part of the active site, completed by region of other domains not conserved between the various ATP-grasp enzymes []. The ATP-grasp domain represented by this entry is found primarily in succinyl-CoA synthetases (6.2.1.5 from EC).; PDB: 3PFF_A 3MWD_A 3MWE_A 1CQI_E 1SCU_B 2NU9_G 2NU6_E 1CQJ_E 2NU7_B 1JLL_E ....
Probab=37.18 E-value=71 Score=24.81 Aligned_cols=54 Identities=11% Similarity=0.086 Sum_probs=37.1
Q ss_pred ccHHHHHHHhhcccc---eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 18 IREYEVEDLFYKYGR---ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~---v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.|.+++.++...+|. |....+...+..++=+...-.++++|..+...|=|..|.
T Consensus 25 ~s~eea~~~~~~l~~~~~VvKaQvl~GgRGK~GgVk~~~s~~ea~~~a~~mlg~~l~ 81 (202)
T PF08442_consen 25 TSPEEAREAAKELGGKPLVVKAQVLAGGRGKAGGVKIAKSPEEAKEAAKEMLGKTLK 81 (202)
T ss_dssp SSHHHHHHHHHHHTTSSEEEEE-SSSSTTTTTTCEEEESSHHHHHHHHHTTTTSEEE
T ss_pred CCHHHHHHHHHHhCCCcEEEEEeEeecCcccCCceeecCCHHHHHHHHHHHhCCceE
Confidence 567888888877663 555555555666663343455899999999888888776
No 280
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=36.85 E-value=1.5e+02 Score=20.72 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=18.3
Q ss_pred CCCCccHHHHHHHhhcccceEEEEE
Q 024276 14 LPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 14 l~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
||+-++ .|-.+|+.-|+|.+|-.
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svIt 33 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVIT 33 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEE
Confidence 677764 58899999999988754
No 281
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.20 E-value=93 Score=18.27 Aligned_cols=43 Identities=12% Similarity=0.114 Sum_probs=25.7
Q ss_pred HHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEECCHHHHHHHHH
Q 024276 21 YEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 21 ~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|-++|.++| .|..+...... .......+...+.+.+..++.
T Consensus 14 ~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~ 58 (65)
T cd04882 14 HEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQ 58 (65)
T ss_pred HHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHH
Confidence 55677777776 66666553332 223444555667777777776
No 282
>PRK05738 rplW 50S ribosomal protein L23; Reviewed
Probab=35.48 E-value=89 Score=20.77 Aligned_cols=31 Identities=19% Similarity=0.344 Sum_probs=22.8
Q ss_pred EEEcCCCCCccHHHHHHHhhc-cc-ceEEEEEe
Q 024276 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELK 39 (270)
Q Consensus 9 l~V~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~ 39 (270)
.|+-.++..+|..||++.|+. || +|..|..+
T Consensus 22 ~~~F~V~~~a~K~eIK~aie~lf~VkV~~VnT~ 54 (92)
T PRK05738 22 KYVFEVAPDATKPEIKAAVEKLFGVKVESVNTL 54 (92)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCceeEEEEE
Confidence 444457789999999999986 55 66666653
No 283
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=35.32 E-value=1.4e+02 Score=20.14 Aligned_cols=51 Identities=24% Similarity=0.249 Sum_probs=37.2
Q ss_pred CccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC
Q 024276 17 DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
+-++++|..+...=|.|.+|.+....-..=.|.+...+..+++..++.|+.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 445678888888667999999855433244678889999999999997764
No 284
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=35.05 E-value=2.8e+02 Score=25.95 Aligned_cols=59 Identities=15% Similarity=0.120 Sum_probs=34.5
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhc---ccceEEEEEecCCCCCcEEE-EEECCHHHHHHHHHhc
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYK---YGRILDIELKIPPRPPCYCF-VEFENARDAEDAIRGR 65 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~---~G~v~~~~~~~~~~~~g~af-V~f~~~~~a~~A~~~l 65 (270)
.++|.|+-||..++.+.|.+.... -|.+. |.-..+....+..| |++.....++..+..|
T Consensus 220 ~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~L 282 (635)
T PRK09631 220 EKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEAL 282 (635)
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHH
Confidence 468999999999999888876442 24443 22222222234444 4555555555555444
No 285
>PF08734 GYD: GYD domain; InterPro: IPR014845 These proteins of unknown function are usually less than 100 amino acids in length. They may belong to the dimeric alpha/beta barrel superfamily.
Probab=35.02 E-value=1.3e+02 Score=19.79 Aligned_cols=46 Identities=9% Similarity=-0.020 Sum_probs=33.0
Q ss_pred HHHHHHHhhhcC-ceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024276 138 WQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 138 ~~~l~~~f~~~g-~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 183 (270)
.+.++++++..| ++..+.+..+.-.....+++.+.+.|.++.-.+.
T Consensus 22 ~~a~~~~~e~~Gg~l~~~y~t~G~yD~v~i~eaPD~~~a~~~~l~i~ 68 (91)
T PF08734_consen 22 AEAVRALIEALGGKLKSFYWTLGEYDFVVIVEAPDDETAAAASLAIR 68 (91)
T ss_pred HHHHHHHHHHcCCEEEEEEEecCCCCEEEEEEcCCHHHHHHHHHHHH
Confidence 456778887766 7787888877655577888888888777664443
No 286
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=34.73 E-value=33 Score=25.97 Aligned_cols=72 Identities=15% Similarity=0.156 Sum_probs=48.3
Q ss_pred ceEEEeCCCCCCCH-----HHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccc-ceee
Q 024276 125 YRVIVRGLPSSASW-----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-RITV 198 (270)
Q Consensus 125 ~~l~v~nl~~~~~~-----~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~-~i~v 198 (270)
..+.+.+++..+.. .....+|..|.+.....+.+.- +..-|.|.+++.|..|..++++..+. +. .+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf--rrvRi~f~~p~~a~~a~i~~~~~~f~----~~~~~k~ 84 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF--RRVRINFSNPEAAADARIKLHSTSFN----GKNELKL 84 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh--ceeEEeccChhHHHHHHHHhhhcccC----CCceEEE
Confidence 45677777755532 3456677766655444443332 36778899999999999999999988 44 5555
Q ss_pred ecCC
Q 024276 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
-++.
T Consensus 85 yfaQ 88 (193)
T KOG4019|consen 85 YFAQ 88 (193)
T ss_pred EEcc
Confidence 5544
No 287
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=34.35 E-value=1e+02 Score=18.18 Aligned_cols=39 Identities=10% Similarity=0.099 Sum_probs=22.9
Q ss_pred CccHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEECCH
Q 024276 17 DIREYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENA 55 (270)
Q Consensus 17 ~~t~~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~ 55 (270)
.-.-.+|-++|..+| .|..+...... .......+.+.+.
T Consensus 10 ~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~ 50 (71)
T cd04879 10 PGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSP 50 (71)
T ss_pred CCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCC
Confidence 334567888888876 67777764432 2234444455443
No 288
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=33.98 E-value=1.8e+02 Score=21.41 Aligned_cols=33 Identities=36% Similarity=0.436 Sum_probs=25.2
Q ss_pred eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC
Q 024276 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
|.+|.+. ...+||.||+....+++..++..+.+
T Consensus 36 i~~i~vp--~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAP--PELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEcc--CCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 5555443 33689999999988999999987765
No 289
>PHA01632 hypothetical protein
Probab=33.90 E-value=46 Score=19.63 Aligned_cols=21 Identities=24% Similarity=0.404 Sum_probs=17.1
Q ss_pred EEEcCCCCCccHHHHHHHhhc
Q 024276 9 IYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 9 l~V~nl~~~~t~~~L~~~F~~ 29 (270)
|.|..+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 456789999999999987753
No 290
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=33.84 E-value=18 Score=22.53 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=17.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhh
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFY 28 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~ 28 (270)
-+++||||+||..+-.++=..++.
T Consensus 26 tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred cCceEEECCCChHHHHcCcchHHH
Confidence 578999999999876655444443
No 291
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=33.40 E-value=10 Score=31.78 Aligned_cols=57 Identities=21% Similarity=0.137 Sum_probs=0.0
Q ss_pred EEcCCCCCcc-------------HHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC
Q 024276 10 YVGNLPSDIR-------------EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 10 ~V~nl~~~~t-------------~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
|+.|||.-.. ...+.+++.+.|.|..-.|..+=+ .|.+||-+-.++++.++++.|.+
T Consensus 252 ~~eNl~Rv~p~~l~a~id~~~~~~p~iF~~i~~~G~v~~~EM~rtFN-mGvG~v~iv~~e~~~~~~~~l~~ 321 (345)
T COG0150 252 FVENLPRVLPEGLGAVIDKPSWPPPPIFKWLQKAGNVEREEMYRTFN-MGVGMVLIVPEEDAEKALALLKE 321 (345)
T ss_pred hhhhChhhcCccceEEEcCCCCCCcHHHHHHHHhcCCCHHHHHHHhc-CccceEEEEcHHHHHHHHHHHHh
No 292
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=33.10 E-value=44 Score=29.90 Aligned_cols=39 Identities=41% Similarity=0.622 Sum_probs=34.8
Q ss_pred CcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 45 PCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..++++.|++++.+.+|+..++|..+.+..+.++.....
T Consensus 63 ~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 63 PKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 579999999999999999999999999888888877654
No 293
>PRK11901 hypothetical protein; Reviewed
Probab=32.84 E-value=2e+02 Score=24.21 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=39.0
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCc---EE--EEEecChhhHHHHHHhcCCcc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT---YG--VVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g---~a--fv~f~~~~~a~~a~~~l~g~~ 186 (270)
......++|-|..+ ..++.|..+...++ +..+.+......| |. |-.|.+.++|..|+..|--..
T Consensus 240 s~p~~~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 240 SAPASHYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred cCCCCCeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 33444556666553 45777888877775 3334444333223 33 335889999999999886543
No 294
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=32.43 E-value=57 Score=26.39 Aligned_cols=31 Identities=29% Similarity=0.535 Sum_probs=24.2
Q ss_pred CCeEEEcCCCCCccHHHHHHHhh--cccceEEE
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFY--KYGRILDI 36 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~--~~G~v~~~ 36 (270)
...+.|+|||..++..-|.+++. .||.+.-+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 45789999999999999999987 45544433
No 295
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=32.17 E-value=2.8e+02 Score=23.45 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=26.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFV 50 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV 50 (270)
.+..++|+|-+-.+---+.|.+....-|--....+.+++ +.|.|-|
T Consensus 79 ~p~~~~f~GsvG~Dk~ge~l~~~~~~aGv~~~yq~~~d~-~TGtCav 124 (343)
T KOG2854|consen 79 QPGATVFFGSVGKDKFGELLKSKARAAGVNVHYQVKEDG-PTGTCAV 124 (343)
T ss_pred CCCceEEEeeccCchHHHHHHHHHHhcCceEEEEeccCC-CCceEEE
Confidence 466899999887775556666666666633333334433 3444433
No 296
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=31.91 E-value=68 Score=18.83 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.9
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccc
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGR 32 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~ 32 (270)
+.++|.+.....+.++|.+++..+|-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 56888888768888999999999885
No 297
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=31.48 E-value=1.4e+02 Score=19.80 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=31.4
Q ss_pred EEEcCCCCCccHHHHHHHhhc-cc-ceEEEEEec-------CCCC------CcEEEEEECCHHH
Q 024276 9 IYVGNLPSDIREYEVEDLFYK-YG-RILDIELKI-------PPRP------PCYCFVEFENARD 57 (270)
Q Consensus 9 l~V~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~-------~~~~------~g~afV~f~~~~~ 57 (270)
.|+-.+++.+|..||++.++. || +|..|.... .+.. .--|+|++...+.
T Consensus 22 ~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~~~~gk~kR~g~~~g~~~~~KKaiVtL~~~~~ 85 (91)
T PF00276_consen 22 QYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTMNYPGKKKRKGKFVGKTKDYKKAIVTLKEGDK 85 (91)
T ss_dssp EEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEEEETSEEEESSSCEEEE-EEEEEEEEESTTSC
T ss_pred EEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEeEeCCCceEeCCccccCCCcEEEEEEeCCCCc
Confidence 344457889999999998885 55 666666522 1110 1368888877643
No 298
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=31.33 E-value=1.2e+02 Score=18.27 Aligned_cols=50 Identities=18% Similarity=0.330 Sum_probs=28.3
Q ss_pred cHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEEC--CHHHHHHHHHhcCCcc
Q 024276 19 REYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFE--NARDAEDAIRGRDGYN 69 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~--~~~~a~~A~~~l~~~~ 69 (270)
.-..|.++|..+| .|..+..... .......+|.+. +.+++.++|. -.|+.
T Consensus 14 ~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~-~~G~~ 67 (72)
T cd04883 14 QLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLR-RAGYE 67 (72)
T ss_pred HHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHH-HCCCe
Confidence 3456788888886 6776655433 222333455554 5556666666 34443
No 299
>PF06014 DUF910: Bacterial protein of unknown function (DUF910); InterPro: IPR009256 This family consists of several short bacterial proteins of unknown function.; PDB: 2NN4_A.
Probab=30.93 E-value=32 Score=20.97 Aligned_cols=17 Identities=35% Similarity=0.729 Sum_probs=10.1
Q ss_pred HHHHHHHhhcccceEEE
Q 024276 20 EYEVEDLFYKYGRILDI 36 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~ 36 (270)
-=||.+++.+||.+..+
T Consensus 4 lyDVqQLLK~fG~~IY~ 20 (62)
T PF06014_consen 4 LYDVQQLLKKFGIIIYV 20 (62)
T ss_dssp HHHHHHHHHTTS-----
T ss_pred HHHHHHHHHHCCEEEEe
Confidence 35789999999976654
No 300
>PF14026 DUF4242: Protein of unknown function (DUF4242)
Probab=30.70 E-value=1.5e+02 Score=18.93 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=36.8
Q ss_pred EEEeCCCCCCCHHHHHHHhhh-------cCceeEEEEeeCCCCc--EEEEEecChhhHHHHHHhcCCccc
Q 024276 127 VIVRGLPSSASWQDLKDHMRK-------AGDVCFAEVSRDSEGT--YGVVDYTNPEDMKYAIRKLDDTEF 187 (270)
Q Consensus 127 l~v~nl~~~~~~~~l~~~f~~-------~g~v~~~~~~~~~~~g--~afv~f~~~~~a~~a~~~l~g~~~ 187 (270)
|...++|..++.++|.+...+ +..|..+.-......+ ||+.+-.+.+...++.+.- |...
T Consensus 3 mver~~p~~it~e~l~~~~~~~~~~~~~~~~V~w~~s~v~~d~~k~~Cly~Ap~~eaV~~~~~~a-G~p~ 71 (77)
T PF14026_consen 3 MVERDFPGGITAEDLAAAHAKSCAVQAEMPGVQWLRSYVSEDDGKIFCLYEAPDEEAVREHARRA-GLPA 71 (77)
T ss_pred EEEEeCCCCCCHHHHHHHHHHhHHHHhhcCCeEEEEEEEecCCCeEEEEEECCCHHHHHHHHHHc-CCCc
Confidence 445678888898887655443 3456666655554444 5555556666666666543 5543
No 301
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=30.60 E-value=1.8e+02 Score=19.90 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=28.4
Q ss_pred HHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHH
Q 024276 21 YEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+|..++..+| |.+..|..+ ....-||++++.+.+....++.
T Consensus 27 PE~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 27 PELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 35777888887 455555443 2446799999997776666665
No 302
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=29.49 E-value=26 Score=29.97 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=42.6
Q ss_pred CeEEEcCCCCCccH--------HHHHHHhhc--ccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHH
Q 024276 7 RTIYVGNLPSDIRE--------YEVEDLFYK--YGRILDIELKI---PPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 7 ~~l~V~nl~~~~t~--------~~L~~~F~~--~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+.+|+.++....+. +++...|.. .+++..+.+.. .....|-.|++|...+.|++++.
T Consensus 175 r~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 175 RDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 45666666665444 489999998 56777777743 35668889999999999999875
No 303
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=29.38 E-value=21 Score=22.19 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=26.8
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024276 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
++|.+.|..++....+. +=.+|..|.+.++|..++..++
T Consensus 27 ~~v~~~~~~~~~f~k~v-------kL~aF~pF~s~~~ALe~~~ais 65 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIV-------KLKAFSPFKSAEEALENANAIS 65 (67)
T ss_pred HHHHHHHcCHHHHhhhh-------hhhhccCCCCHHHHHHHHHHhh
Confidence 57888887655443332 2258999999999988876553
No 304
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=29.13 E-value=1.3e+02 Score=18.00 Aligned_cols=47 Identities=21% Similarity=0.099 Sum_probs=27.9
Q ss_pred cHHHHHHHhhccc-ceEEEEEecCC-CCCcEEEEEECCHHHHHHHHHhc
Q 024276 19 REYEVEDLFYKYG-RILDIELKIPP-RPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~~-~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.-.+|.++|..+| .|..+...... ...+...+.+...++...+++.|
T Consensus 14 ~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L 62 (69)
T cd04909 14 VIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEIL 62 (69)
T ss_pred HHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHH
Confidence 3467888888877 66666653321 12455667776555555555443
No 305
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=29.13 E-value=70 Score=26.72 Aligned_cols=22 Identities=14% Similarity=0.270 Sum_probs=18.9
Q ss_pred EEEEecChhhHHHHHHhcCCcc
Q 024276 165 GVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 165 afv~f~~~~~a~~a~~~l~g~~ 186 (270)
|||.|++..+|..|.+.+....
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~ 22 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR 22 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC
Confidence 7999999999999999766554
No 306
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.12 E-value=1.9e+02 Score=21.12 Aligned_cols=47 Identities=19% Similarity=0.191 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024276 131 GLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 131 nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 183 (270)
.|+..+..+-|+++.+..|.|.... -. --.+.|.+.+...+|+..+.
T Consensus 118 ~L~epl~~eRlqDi~E~hgvIiE~~-E~-----D~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 118 HLREPLAEERLQDIAETHGVIIEFE-EY-----DLVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred ecCchhHHHHHHHHHHhhheeEEee-ec-----cEEEEeccHHHHHHHHHHHH
Confidence 4788999999999999999987655 22 23567899999999988653
No 307
>COG0090 RplB Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]
Probab=28.78 E-value=81 Score=25.54 Aligned_cols=32 Identities=6% Similarity=0.146 Sum_probs=20.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCcee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~ 152 (270)
...++.|-+.|+|.-+.--.|+.....-|.+.
T Consensus 124 ik~GN~lpL~~IP~Gt~VhNVE~~pG~GGq~a 155 (275)
T COG0090 124 IKPGNALPLGNIPEGTIVHNVELKPGDGGQLA 155 (275)
T ss_pred cCCcceeeeccCCCCceEEeeeeccCCCceEE
Confidence 34567888999987776555554444444443
No 308
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=28.33 E-value=45 Score=26.41 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=27.5
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEE
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAE 155 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~ 155 (270)
..++|+-|+|...+++.|....+..|.+..+.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 36899999999999999999999998665443
No 309
>COG0045 SucC Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=28.30 E-value=3.4e+02 Score=23.50 Aligned_cols=66 Identities=14% Similarity=0.111 Sum_probs=46.9
Q ss_pred ccHHHHHHHhhccc---ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC----cccCCceEEEEecCCC
Q 024276 18 IREYEVEDLFYKYG---RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG----YNFDGCRLRVELAHGG 83 (270)
Q Consensus 18 ~t~~~L~~~F~~~G---~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~----~~~~g~~l~v~~~~~~ 83 (270)
.+.+++.++-.++| -|...+++..+..+.=+.---.+.++|..+.+.|=| +.+.|.++..-+....
T Consensus 26 ~s~eea~~~a~~lg~~~~VvKaQV~aGGRGKaGGVk~~~s~~ea~~~a~~~lg~~~q~~~~G~~v~~vlvee~ 98 (387)
T COG0045 26 TSPEEAEEAAKELGGGPVVVKAQVHAGGRGKAGGVKLAKSPEEAKEAAEEILGKNYQTDIKGEPVNKVLVEEA 98 (387)
T ss_pred eCHHHHHHHHHHhCCCcEEEEeeeeecCccccCceEEeCCHHHHHHHHHHHhCcccccCcCCceeeEEEEEec
Confidence 67788888888886 345555665555565444455689999999888888 8888887766665544
No 310
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=27.55 E-value=1.6e+02 Score=18.28 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=35.7
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN 54 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~ 54 (270)
..+++|.++.-.-=...+.+.+.....|..+.+-.. .+.++|.|.+
T Consensus 3 ~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~---~~~~~V~~d~ 48 (71)
T COG2608 3 KTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLE---KGTATVTFDS 48 (71)
T ss_pred eEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcc---cCeEEEEEcC
Confidence 457888888777666788888888877888888544 5569999987
No 311
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=27.52 E-value=17 Score=21.71 Aligned_cols=37 Identities=22% Similarity=0.239 Sum_probs=18.6
Q ss_pred CCcEEEEEECC-HHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 44 PPCYCFVEFEN-ARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 44 ~~g~afV~f~~-~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++|||||...+ .++.--.-..|++.+- |-.+.|....
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~~l~~A~~-gD~V~v~i~~ 44 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPRNLNGAMD-GDKVLVRITP 44 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HHHHTTS-T-T-EEEEEEEE
T ss_pred cCCCEEEEECCCCCCEEECHHHHCCCCC-CCEEEEEEec
Confidence 47999999987 3333333444554433 4444454443
No 312
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=27.45 E-value=56 Score=20.03 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=16.4
Q ss_pred HhhcccceEEEEEecCCCCCcEEEEEECCH
Q 024276 26 LFYKYGRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 26 ~F~~~G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
+|+.-|+|.+++ ..||+|.|.-+
T Consensus 31 ife~~GEvl~ik-------gdYa~vr~~~P 53 (67)
T PF11910_consen 31 IFEGPGEVLDIK-------GDYAQVRFRVP 53 (67)
T ss_pred eecCCCeEEEec-------CCEEEEEecCC
Confidence 466668887765 45999999543
No 313
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=26.66 E-value=2e+02 Score=19.27 Aligned_cols=45 Identities=22% Similarity=0.247 Sum_probs=26.0
Q ss_pred eEEEcCCCCCccHHHHH---HHhhcccceEEEEE-----ecCCCCCcEEEEEE
Q 024276 8 TIYVGNLPSDIREYEVE---DLFYKYGRILDIEL-----KIPPRPPCYCFVEF 52 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~---~~F~~~G~v~~~~~-----~~~~~~~g~afV~f 52 (270)
..|+.|||.++.+.++. .+|..+++-..|.. .......|++.+-+
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~ 64 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLV 64 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEE
Confidence 35889999998876654 45556664455554 22334456555443
No 314
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=25.32 E-value=81 Score=20.99 Aligned_cols=52 Identities=15% Similarity=0.104 Sum_probs=31.1
Q ss_pred CCCCccHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024276 14 LPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 14 l~~~~t~~~L~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+-+.++...|..-|-.-|. -+-..+.. +-=+.+|.|.|.+.+.+..|.+.|-
T Consensus 20 ~~p~l~~~~i~~Q~~~~gkk~~pp~lRk-D~W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 20 QTPNLDNNQILKQFPFPGKKNKPPSLRK-DYWRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred cCcccChhHHHHhccCCCcccCCchhcc-ccceEeEEEECCChHHHHHHHHHHH
Confidence 3445666666665654442 11111111 1115699999999999999987664
No 315
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=25.24 E-value=1.5e+02 Score=27.26 Aligned_cols=49 Identities=20% Similarity=0.414 Sum_probs=36.1
Q ss_pred ccHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcC
Q 024276 18 IREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 18 ~t~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+--+|..+|- .+|-|.++.+... ......+++.|.+.++|..|+..+.
T Consensus 278 ~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~av~~i~ 332 (555)
T PLN02805 278 AAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADVAIATM 332 (555)
T ss_pred CCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHHHHHHH
Confidence 34457888872 5889999888432 3446678999999999999887643
No 316
>TIGR00405 L26e_arch ribosomal protein L24p/L26e, archaeal. This protein contains a KOW domain, shared by bacterial NusG and the L24p/L26e family of ribosomal proteins. Although called archaeal NusG in several publications, it is the only close homolog of eukaryotic L26e in archaeal genomes, shares an operon with L11 in many genomes, and has been sequenced from purified ribosomes. It is here designated as a ribosomal protein for these reasons.
Probab=25.14 E-value=2.7e+02 Score=20.08 Aligned_cols=27 Identities=30% Similarity=0.343 Sum_probs=22.1
Q ss_pred CCCCCcEEEEEECCHHHHHHHHHhcCC
Q 024276 41 PPRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
....+||-||++...++...++..+.|
T Consensus 34 p~~fpGYvFV~~~~~~~~~~~i~~~~g 60 (145)
T TIGR00405 34 PESLKGYILVEAETKIDMRNPIIGVPH 60 (145)
T ss_pred cCCCCcEEEEEEECcHHHHHHHhCCCC
Confidence 345789999999988888888887766
No 317
>PRK11901 hypothetical protein; Reviewed
Probab=25.11 E-value=2e+02 Score=24.18 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=34.9
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEE--EECCHHHHHHHHHhcCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFV--EFENARDAEDAIRGRDG 67 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV--~f~~~~~a~~A~~~l~~ 67 (270)
.-+|.|..+ ..++.|..|..+++ +.++.+..+ |+ .=|..| .|.+.++|..|+..|-.
T Consensus 245 ~YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 245 HYTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CeEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCH
Confidence 345555554 34677877777765 344444332 22 123322 68999999999998864
No 318
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=24.98 E-value=2.1e+02 Score=24.95 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=34.9
Q ss_pred CccHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhc
Q 024276 17 DIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 17 ~~t~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
+..--+|..+|. .+|-|..+.+... .....+.++.|.+.++|..|+..+
T Consensus 143 ~~~g~dl~~l~~Gs~GtlGiit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~ 197 (413)
T TIGR00387 143 DVAGYDLTGLFVGSEGTLGIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDI 197 (413)
T ss_pred CCCCCChhhhcccCCccceEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHH
Confidence 333346778875 3788888887433 344567788999999999998654
No 319
>PF01782 RimM: RimM N-terminal domain; InterPro: IPR002676 The RimM protein is essential for efficient processing of 16S rRNA []. The RimM protein was shown to have affinity for free ribosomal 30S subunits but not for 30S subunits in the 70S ribosomes [].; GO: 0006364 rRNA processing; PDB: 2QGG_A 3A1P_C 2DOG_A 2DYI_A 3H9N_A 2F1L_A.
Probab=24.85 E-value=1.7e+02 Score=18.68 Aligned_cols=23 Identities=30% Similarity=0.260 Sum_probs=17.1
Q ss_pred CcEEEEEECCHHHHHHHHHhcCCc
Q 024276 45 PCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
.+..+|.|+..++-..|.. |.|.
T Consensus 54 ~~~~i~~~~gi~~r~~Ae~-l~g~ 76 (84)
T PF01782_consen 54 GKSLIVKFEGIDDREAAEA-LRGC 76 (84)
T ss_dssp TTEEEEEETT--SHHHHHT-TTT-
T ss_pred CCEEEEEEcCCCCHHHHHh-hCCC
Confidence 6789999999999999988 6653
No 320
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=24.83 E-value=43 Score=20.59 Aligned_cols=60 Identities=17% Similarity=0.076 Sum_probs=29.9
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEE-EEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~-~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
-.|.|+.+...-.-+.+..-+...|.-.. +.+...+..-..-+-.|.+.++|..++..|.
T Consensus 5 y~vQv~s~~~~~~A~~~~~~l~~~g~~~~~~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 5 YYVQVGSFSSEENAERLLAKLKKKGPDAYVVQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEEEES-HHHHHHHHHHHHHHT-----EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEEEEEcCCHHHHHHHHHHHHhcCCCcceEEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 35666655544444444444444453322 2222222112223337899999999998776
No 321
>KOG1999 consensus RNA polymerase II transcription elongation factor DSIF/SUPT5H/SPT5 [Transcription]
Probab=24.53 E-value=2.2e+02 Score=27.81 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=27.0
Q ss_pred CCCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 41 PPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 41 ~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
-..-+||-|||=..+..+..||+.+-++...
T Consensus 206 ~D~lkGyIYIEA~KqshV~~Ai~gv~niy~~ 236 (1024)
T KOG1999|consen 206 KDHLKGYIYIEADKQSHVKEAIEGVRNIYAN 236 (1024)
T ss_pred ccccceeEEEEechhHHHHHHHhhhhhheec
Confidence 3456899999999999999999998887766
No 322
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=24.34 E-value=2.2e+02 Score=18.79 Aligned_cols=48 Identities=17% Similarity=0.178 Sum_probs=27.2
Q ss_pred cHHHHHHHhhccc-ceEEEEEecCCCC--CcEEEEEECC--HHHHHHHHHhcC
Q 024276 19 REYEVEDLFYKYG-RILDIELKIPPRP--PCYCFVEFEN--ARDAEDAIRGRD 66 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~~~~--~g~afV~f~~--~~~a~~A~~~l~ 66 (270)
+-.++.+.|..+| .+..|.-...... .=+-||+|.- .+....|+..|.
T Consensus 27 sL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg~~~~~~~~~l~~L~ 79 (90)
T cd04931 27 ALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDKKSAPALDPIIKSLR 79 (90)
T ss_pred HHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEcCCCHHHHHHHHHHH
Confidence 3456677777776 4555554433222 2256788873 445566776664
No 323
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=24.21 E-value=2.9e+02 Score=20.23 Aligned_cols=34 Identities=15% Similarity=0.158 Sum_probs=24.4
Q ss_pred eeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCc
Q 024276 151 VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 151 v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~ 185 (270)
|..+.++.. -.||.||+....+++..++..+.+.
T Consensus 36 i~~i~vp~~-fpGYVfVe~~~~~~~~~~i~~v~~v 69 (153)
T PRK08559 36 IYAILAPPE-LKGYVLVEAESKGAVEEAIRGIPHV 69 (153)
T ss_pred EEEEEccCC-CCcEEEEEEEChHHHHHHHhcCCCE
Confidence 444444433 4579999999888888998877653
No 324
>PRK15464 cold shock-like protein CspH; Provisional
Probab=23.86 E-value=64 Score=20.20 Aligned_cols=10 Identities=10% Similarity=0.013 Sum_probs=7.8
Q ss_pred CcEEEEEECC
Q 024276 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||+=.+
T Consensus 16 KGfGFI~~~~ 25 (70)
T PRK15464 16 SGKGFIIPSD 25 (70)
T ss_pred CCeEEEccCC
Confidence 8999997554
No 325
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=23.07 E-value=1e+02 Score=24.71 Aligned_cols=24 Identities=29% Similarity=0.211 Sum_probs=20.4
Q ss_pred eEEEcCCCCCccHHHHHHHhhccc
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYG 31 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G 31 (270)
-+.|+|||..++.+.|.+++..+|
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~ 119 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPK 119 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCC
Confidence 378999999999999999997444
No 326
>KOG2854 consensus Possible pfkB family carbohydrate kinase [Carbohydrate transport and metabolism]
Probab=23.01 E-value=1.1e+02 Score=25.79 Aligned_cols=62 Identities=13% Similarity=0.099 Sum_probs=42.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec-----------C--CCCCcEEEEEECCHHHHHHHHHhcCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-----------P--PRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~-----------~--~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
....+||+++-..+.++-+..+-..+-+...+.++. + .....|++|.|.|+++|....+ .++
T Consensus 159 ka~v~yv~Gffltv~p~ai~~v~qh~~e~~r~~~lnlsapfI~q~~~~~l~~v~~y~DiifgNe~EA~af~~-~~~ 233 (343)
T KOG2854|consen 159 KAKVFYVAGFFLTVSPDAIRKVAQHAAENNRVFTLNLSAPFISQFFKDALDKVLPYADIIFGNEDEAAAFAR-AHG 233 (343)
T ss_pred heeEEEEEEEEEEeChHHHHHHHHHHHHhcchhheeccchhHHHHHHHHHHhhcCcceEEEcCHHHHHHHHH-hhC
Confidence 456788888888888888877776654444432211 0 1335799999999999998877 443
No 327
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=22.79 E-value=1.8e+02 Score=17.16 Aligned_cols=59 Identities=14% Similarity=0.042 Sum_probs=29.4
Q ss_pred eEEEcCCCCCccHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEECCH-HHHHHHHHhcC
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFENA-RDAEDAIRGRD 66 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~~~-~~a~~A~~~l~ 66 (270)
+|.|..-...-.-.+|..+|..+| .|..+..... +......++++... +....++..|.
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 63 (72)
T cd04878 2 TLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLN 63 (72)
T ss_pred EEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHh
Confidence 444433333333467888888876 6666665432 22223344444332 44444555444
No 328
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.25 E-value=6.4e+02 Score=23.41 Aligned_cols=99 Identities=14% Similarity=0.071 Sum_probs=59.2
Q ss_pred cHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC--Ccc-----c-CCceEEEEecCCCCCCCCCC
Q 024276 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYN-----F-DGCRLRVELAHGGSGRGPSS 90 (270)
Q Consensus 19 t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~-----~-~g~~l~v~~~~~~~~~~~~~ 90 (270)
-.++|.+.|..-+-|..|.+.. .||-++.+...--+...+..+. +-. + .|++|.|+++.+.
T Consensus 59 iA~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN------- 127 (577)
T COG0018 59 IAEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN------- 127 (577)
T ss_pred HHHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC-------
Confidence 3455566666544567777742 2444444443333333333333 222 2 5789999997654
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCC
Q 024276 91 SDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS 160 (270)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~ 160 (270)
++.-++|+.+-..+-=+.|..++...| .|+....+.|.
T Consensus 128 --------------------------------ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD~ 166 (577)
T COG0018 128 --------------------------------PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVNDW 166 (577)
T ss_pred --------------------------------CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECcH
Confidence 224577888888888888999999988 45555555554
No 329
>PF13689 DUF4154: Domain of unknown function (DUF4154)
Probab=21.99 E-value=3.1e+02 Score=19.72 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=26.6
Q ss_pred CcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 45 PCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+-++.+.+.. ...++..|.+..+.|++|.|....
T Consensus 26 ~~~~icv~g~~~-~~~~L~~l~~~~~~~~~i~v~~~~ 61 (145)
T PF13689_consen 26 SPFRICVLGDDP-FAEALSTLAGKQVGGRPIRVRRLS 61 (145)
T ss_pred CCeEEEEECChH-HHHHHHHhhhcccCCCcEEEEECC
Confidence 445566666555 445777789999999999998764
No 330
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=21.68 E-value=2.1e+02 Score=17.73 Aligned_cols=50 Identities=22% Similarity=0.270 Sum_probs=29.3
Q ss_pred ccHHHHHHHhhccc-ceEEEEEecCCC--CCcEEEEEEC-CHHHHHHHHHhcCC
Q 024276 18 IREYEVEDLFYKYG-RILDIELKIPPR--PPCYCFVEFE-NARDAEDAIRGRDG 67 (270)
Q Consensus 18 ~t~~~L~~~F~~~G-~v~~~~~~~~~~--~~g~afV~f~-~~~~a~~A~~~l~~ 67 (270)
-+-.++.+.|..+| .+..|.-..... ..=+-||+|. +.+...+|+..|..
T Consensus 12 G~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~~~~~~~~~~l~~L~~ 65 (74)
T cd04904 12 GALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCEVDRGDLDQLISSLRR 65 (74)
T ss_pred cHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEEcChHHHHHHHHHHHH
Confidence 33566777787776 445554433221 2235568877 55566778777654
No 331
>smart00738 NGN In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. In Spt5p, this domain may confer affinity for Spt4p.Spt4p
Probab=21.64 E-value=2.1e+02 Score=19.05 Aligned_cols=24 Identities=42% Similarity=0.614 Sum_probs=19.0
Q ss_pred CcEEEEEECCHHHHHHHHHhcCCc
Q 024276 45 PCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
.||.||++.-.+++..++..+.+.
T Consensus 59 pGYvFv~~~~~~~~~~~i~~~~~v 82 (106)
T smart00738 59 PGYIFVEADLEDEVWTAIRGTPGV 82 (106)
T ss_pred CCEEEEEEEeCCcHHHHHhcCCCc
Confidence 499999998777777888777763
No 332
>PF09902 DUF2129: Uncharacterized protein conserved in bacteria (DUF2129); InterPro: IPR016979 This is a group of uncharacterised conserved proteins.
Probab=21.56 E-value=2.2e+02 Score=17.91 Aligned_cols=39 Identities=28% Similarity=0.395 Sum_probs=27.8
Q ss_pred HhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024276 26 LFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 26 ~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
-+..||.|..+.-. ..|+ |-|-|.++++..+..|....+
T Consensus 16 ~L~kfG~i~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 54 (71)
T PF09902_consen 16 QLRKFGDIHYVSKK-----MKYV-VLYVNEEDVEEIIEKLKKLKF 54 (71)
T ss_pred hHhhcccEEEEECC-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 34579998877543 2344 568899999999988876544
No 333
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=21.55 E-value=4.3e+02 Score=24.29 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=23.9
Q ss_pred EEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 50 VEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+-|.++++|.+|+.. +..-.|..|.|.+.-++
T Consensus 402 ~VF~see~a~~ai~~--g~I~~gdVvViRyeGPk 433 (552)
T PRK00911 402 RVFDSEEEAMEAILA--GKIKAGDVVVIRYEGPK 433 (552)
T ss_pred EEECCHHHHHHHHhc--CCCCCCeEEEEeCCCCC
Confidence 469999999999984 54556777777776554
No 334
>TIGR02516 type_III_yscC type III secretion outer membrane pore, YscC/HrcC family. A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens.
Probab=21.46 E-value=1.3e+02 Score=26.70 Aligned_cols=64 Identities=14% Similarity=0.163 Sum_probs=47.3
Q ss_pred ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEC--CHHHHHHHHHhcCCccc--CCceEEEEecC
Q 024276 18 IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE--NARDAEDAIRGRDGYNF--DGCRLRVELAH 81 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~--~~~~a~~A~~~l~~~~~--~g~~l~v~~~~ 81 (270)
+...+|.++|..++.+....+..++.-+|-.=+.|. .++.+..++...+|+.| +|..|.|....
T Consensus 6 a~~~~i~~vl~~~a~~~g~~~vv~~~V~g~vt~~~~~~~~~~fL~~L~~~~gl~~~~~g~~l~I~~~~ 73 (462)
T TIGR02516 6 AKQESLRALLADFAANYGIPVVVSSKVNKKVTGKFEDDNPEKFLQRLALLYGLTWYYDGNALYIYPNS 73 (462)
T ss_pred EcCCcHHHHHHHHHHhcCCCEEECccccccEEEEeCCCCHHHHHHHHHHHhCcEEEecCCEEEEEccc
Confidence 345678888888888888777666555677777777 67778888876788666 68888887654
No 335
>PRK10905 cell division protein DamX; Validated
Probab=21.43 E-value=2.8e+02 Score=23.32 Aligned_cols=60 Identities=20% Similarity=0.316 Sum_probs=35.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCc--E--EEEEecChhhHHHHHHhcCCc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT--Y--GVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g--~--afv~f~~~~~a~~a~~~l~g~ 185 (270)
..++|-|.. ..+.+.|..+..++|--.........++. | -+=.|.+.++|..|+..|-..
T Consensus 246 ~~YTLQL~A---~Ss~~~l~~fakKlgL~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa~ 309 (328)
T PRK10905 246 SHYTLQLSS---SSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPAD 309 (328)
T ss_pred CceEEEEEe---cCCHHHHHHHHHHcCCCceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCHH
Confidence 345555554 44567777777777543233223333332 2 233488999999999988543
No 336
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=21.40 E-value=2.2e+02 Score=17.82 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=30.2
Q ss_pred cHHHHHHHhhccc-ceEEEEEecCCCCC--cEEEEEECC---HHHHHHHHHhcCC
Q 024276 19 REYEVEDLFYKYG-RILDIELKIPPRPP--CYCFVEFEN---ARDAEDAIRGRDG 67 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~~~~~--g~afV~f~~---~~~a~~A~~~l~~ 67 (270)
.-.++.++|.++| .|..+......... -..||++.. .++...++..|..
T Consensus 14 ~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~ 68 (80)
T cd04905 14 ALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKR 68 (80)
T ss_pred HHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 3567788888886 66677654432222 245567763 5666777776654
No 337
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=21.34 E-value=1e+02 Score=25.52 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.2
Q ss_pred eEEEcCCCCCccHHHHHHHhhc
Q 024276 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~ 29 (270)
.+.|+|||+.++...|.+++..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~ 124 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAH 124 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhc
Confidence 4789999999999999998865
No 338
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=21.09 E-value=2.5e+02 Score=19.67 Aligned_cols=71 Identities=11% Similarity=0.247 Sum_probs=35.8
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEEC--C------HHHHHHHHHhcCCcccCCceEEE
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFE--N------ARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~--~------~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
-.||||++|.....+.|.+. .+..|.++.-... ....++-++.+. + .+....++..++...-.|.+|-|
T Consensus 6 ~~l~~G~~~~~~~~~~l~~~--gi~~Vi~l~~~~~~~~~~~~~~~~ipi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlV 83 (138)
T smart00195 6 PHLYLGSYSSALNLALLKKL--GITHVINVTNEVPNLNKKGFTYLGVPILDNTETKISPYFPEAVEFIEDAEKKGGKVLV 83 (138)
T ss_pred CCeEECChhHcCCHHHHHHc--CCCEEEEccCCCCCCCCCCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEE
Confidence 35999999877654444432 3445665543211 123444555444 2 12223445544444445667666
Q ss_pred Ee
Q 024276 78 EL 79 (270)
Q Consensus 78 ~~ 79 (270)
.=
T Consensus 84 HC 85 (138)
T smart00195 84 HC 85 (138)
T ss_pred EC
Confidence 53
No 339
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.09 E-value=1.9e+02 Score=16.95 Aligned_cols=46 Identities=11% Similarity=0.076 Sum_probs=24.5
Q ss_pred cHHHHHHHhhccc-ceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhc
Q 024276 19 REYEVEDLFYKYG-RILDIELKIP-PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 19 t~~~L~~~F~~~G-~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.-.+|-.+|..+| .|..+..... +....+..+...+. +...+++.|
T Consensus 12 ~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~-~~~~~i~~l 59 (71)
T cd04903 12 AIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQP-IDEEVIEEI 59 (71)
T ss_pred hHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCC-CCHHHHHHH
Confidence 4567788888776 6666665432 22233444555543 333444433
No 340
>PRK15463 cold shock-like protein CspF; Provisional
Probab=20.77 E-value=82 Score=19.67 Aligned_cols=10 Identities=0% Similarity=-0.067 Sum_probs=7.8
Q ss_pred CcEEEEEECC
Q 024276 45 PCYCFVEFEN 54 (270)
Q Consensus 45 ~g~afV~f~~ 54 (270)
+||+||+=.+
T Consensus 16 kGfGFI~~~~ 25 (70)
T PRK15463 16 SGKGLITPSD 25 (70)
T ss_pred CceEEEecCC
Confidence 8999997544
No 341
>PRK02886 hypothetical protein; Provisional
Probab=20.72 E-value=2.6e+02 Score=18.44 Aligned_cols=38 Identities=18% Similarity=0.357 Sum_probs=27.3
Q ss_pred hhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024276 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
+..||.|..+.-. ..|+ |-|-|.++|+..+..|....+
T Consensus 21 LrkyG~I~Y~Skr-----~kYv-vlYvn~~~~e~~~~kl~~l~f 58 (87)
T PRK02886 21 LRKFGNVHYVSKR-----LKYA-VLYCDMEQVEDIMNKLSSLPF 58 (87)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4579999877542 2344 568899999999988876544
No 342
>PRK02302 hypothetical protein; Provisional
Probab=20.53 E-value=2.6e+02 Score=18.54 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=27.3
Q ss_pred hhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc
Q 024276 27 FYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF 70 (270)
Q Consensus 27 F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~ 70 (270)
+..||.|..+.-. ..|+ |-|-|.++|+..++.|....+
T Consensus 23 LrkfG~I~Y~Skk-----~kYv-vlYvn~~~~e~~~~kl~~l~f 60 (89)
T PRK02302 23 LSKYGDIVYHSKR-----SRYL-VLYVNKEDVEQKLEELSKLKF 60 (89)
T ss_pred HhhcCcEEEEecc-----ccEE-EEEECHHHHHHHHHHHhcCCC
Confidence 4579998877542 2344 568899999999988876543
No 343
>KOG2855 consensus Ribokinase [Carbohydrate transport and metabolism]
Probab=20.05 E-value=1.6e+02 Score=24.94 Aligned_cols=50 Identities=10% Similarity=0.129 Sum_probs=36.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCc-eeEEEEeeCCCCcEEEEEe
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDY 169 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~g~afv~f 169 (270)
.+....+.||+++..+.--.+|...+.++|. +..+....+..+++++|..
T Consensus 57 arLG~~~afiGkvGdD~fG~~l~~~L~~~~V~~~~v~~~~~~~T~~a~i~v 107 (330)
T KOG2855|consen 57 ARLGGRVAFIGKVGDDEFGDDLLDILKQNGVDTSGVKFDENARTACATITV 107 (330)
T ss_pred HhcCcceeeeecccchhhHHHHHHHHhhCCcccccceecCCCceEEEEEEE
Confidence 3455789999999999999999999998773 3335555555555655544
No 344
>COG3102 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.04 E-value=50 Score=24.68 Aligned_cols=14 Identities=14% Similarity=0.185 Sum_probs=6.0
Q ss_pred HHHHhhcccceEEE
Q 024276 23 VEDLFYKYGRILDI 36 (270)
Q Consensus 23 L~~~F~~~G~v~~~ 36 (270)
.+..|.+||++.+.
T Consensus 56 wr~~~lqcG~~lS~ 69 (185)
T COG3102 56 WRRGLLQCGELLSE 69 (185)
T ss_pred HHHHHHHHHHHhhh
Confidence 33444444444333
Done!