Query 024276
Match_columns 270
No_of_seqs 277 out of 2614
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 05:27:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024276.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024276hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f02_A Polyadenylate-binding p 100.0 7.3E-36 2.5E-40 233.7 16.7 163 4-203 13-180 (213)
2 3tyt_A Heterogeneous nuclear r 100.0 7.9E-35 2.7E-39 225.7 18.8 195 4-200 2-203 (205)
3 1b7f_A Protein (SXL-lethal pro 100.0 3.9E-34 1.3E-38 215.9 20.0 160 5-201 2-168 (168)
4 3md3_A Nuclear and cytoplasmic 100.0 4.3E-34 1.5E-38 215.1 19.6 159 7-202 1-165 (166)
5 1fxl_A Paraneoplastic encephal 100.0 8.6E-34 2.9E-38 213.7 20.2 157 5-200 1-166 (167)
6 1l3k_A Heterogeneous nuclear r 100.0 7.3E-34 2.5E-38 219.7 19.1 167 4-205 11-184 (196)
7 3pgw_A U1-A; protein-RNA compl 100.0 5.3E-33 1.8E-37 226.8 24.8 196 3-202 6-281 (282)
8 3nmr_A Cugbp ELAV-like family 100.0 8.8E-34 3E-38 215.3 18.7 163 5-202 2-175 (175)
9 2adc_A Polypyrimidine tract-bi 100.0 6.3E-33 2.2E-37 219.4 22.8 194 4-203 32-227 (229)
10 1qm9_A Polypyrimidine tract-bi 100.0 2.7E-33 9.2E-38 216.9 19.6 191 6-202 3-195 (198)
11 2qfj_A FBP-interacting repress 100.0 4.7E-33 1.6E-37 218.4 20.1 173 5-205 27-206 (216)
12 2g4b_A Splicing factor U2AF 65 100.0 7.1E-33 2.4E-37 209.7 19.5 155 4-201 2-171 (172)
13 2yh0_A Splicing factor U2AF 65 100.0 3.3E-32 1.1E-36 210.7 23.1 178 4-204 2-194 (198)
14 1fje_B Nucleolin RBD12, protei 100.0 2.4E-33 8.1E-38 213.0 12.6 161 4-203 11-173 (175)
15 2cjk_A Nuclear polyadenylated 100.0 3.5E-33 1.2E-37 210.4 12.7 158 4-203 1-165 (167)
16 3sde_A Paraspeckle component 1 100.0 6.3E-32 2.2E-36 217.8 17.8 156 4-203 20-178 (261)
17 3smz_A Protein raver-1, ribonu 100.0 3.9E-31 1.3E-35 216.0 18.8 166 4-205 93-265 (284)
18 3smz_A Protein raver-1, ribonu 100.0 1E-30 3.5E-35 213.5 20.1 151 4-203 20-174 (284)
19 2ghp_A U4/U6 snRNA-associated 100.0 6.4E-31 2.2E-35 215.6 17.2 167 5-204 116-291 (292)
20 2ghp_A U4/U6 snRNA-associated 100.0 1.3E-30 4.3E-35 213.8 17.9 153 4-203 39-196 (292)
21 4f25_A Polyadenylate-binding p 99.9 2.2E-25 7.5E-30 156.8 9.8 108 6-140 5-113 (115)
22 3pgw_S U1-70K; protein-RNA com 99.9 7.1E-23 2.4E-27 175.2 19.6 82 4-85 100-184 (437)
23 4fxv_A ELAV-like protein 1; RN 99.9 5.2E-23 1.8E-27 140.4 9.8 78 5-82 18-98 (99)
24 3pgw_S U1-70K; protein-RNA com 99.9 5.8E-23 2E-27 175.8 11.1 76 123-202 101-180 (437)
25 3lqv_A PRE-mRNA branch site pr 99.9 5.5E-23 1.9E-27 144.7 8.5 106 2-150 4-109 (115)
26 2kn4_A Immunoglobulin G-bindin 99.9 9.6E-22 3.3E-26 146.3 13.6 143 36-204 3-150 (158)
27 2i2y_A Fusion protein consists 99.9 1.9E-21 6.4E-26 143.4 13.4 137 42-203 10-147 (150)
28 1sjq_A Polypyrimidine tract-bi 99.9 6.5E-22 2.2E-26 134.7 9.8 80 3-85 13-94 (105)
29 1x4a_A Splicing factor, argini 99.9 1.6E-21 5.3E-26 135.9 11.8 81 3-83 19-99 (109)
30 2lxi_A RNA-binding protein 10; 99.9 2.1E-22 7.2E-27 135.3 7.0 79 6-84 1-84 (91)
31 3r27_A HnRNP L, heterogeneous 99.9 1.1E-21 3.7E-26 132.3 10.1 78 3-83 18-97 (100)
32 2hvz_A Splicing factor, argini 99.9 6.4E-22 2.2E-26 136.0 9.1 76 7-84 1-76 (101)
33 2fy1_A RNA-binding motif prote 99.9 3.7E-21 1.3E-25 135.3 12.6 83 1-83 2-86 (116)
34 2wbr_A GW182, gawky, LD47780P; 99.9 1.2E-21 4.2E-26 127.2 9.0 74 5-81 6-79 (89)
35 3s8s_A Histone-lysine N-methyl 99.9 1.4E-21 4.9E-26 135.7 9.7 80 4-83 4-86 (110)
36 1whw_A Hypothetical protein ri 99.9 6.1E-21 2.1E-25 130.5 12.3 83 3-85 5-90 (99)
37 2dnz_A Probable RNA-binding pr 99.9 8.2E-21 2.8E-25 128.9 12.8 81 3-83 2-85 (95)
38 2ad9_A Polypyrimidine tract-bi 99.9 2.7E-21 9.2E-26 135.0 10.3 81 3-86 28-110 (119)
39 2a3j_A U1 small nuclear ribonu 99.9 3.3E-21 1.1E-25 136.9 10.8 81 3-83 26-110 (127)
40 2dgu_A Heterogeneous nuclear r 99.9 9.1E-21 3.1E-25 130.6 12.7 78 4-86 9-86 (103)
41 1x4d_A Matrin 3; structural ge 99.9 1.8E-21 6.1E-26 132.5 8.4 78 3-83 12-92 (102)
42 2cqi_A Nucleolysin TIAR; RNA r 99.9 1.2E-20 4.1E-25 130.0 12.7 82 3-84 12-94 (103)
43 2cpf_A RNA binding motif prote 99.9 4.3E-21 1.5E-25 131.1 10.4 82 3-84 2-89 (98)
44 2cq1_A PTB-like protein L; RRM 99.9 7.3E-21 2.5E-25 129.7 11.4 79 3-84 12-92 (101)
45 2x1f_A MRNA 3'-END-processing 99.9 5E-21 1.7E-25 130.1 10.3 79 5-83 1-82 (96)
46 2dgs_A DAZ-associated protein 99.9 1.4E-20 4.8E-25 128.7 12.6 80 4-84 8-90 (99)
47 2dgo_A Cytotoxic granule-assoc 99.9 1.3E-20 4.5E-25 132.5 12.7 82 4-85 13-97 (115)
48 3md1_A Nuclear and cytoplasmic 99.8 5.5E-21 1.9E-25 126.4 10.1 78 6-83 1-81 (83)
49 1wex_A Hypothetical protein (r 99.8 9.3E-21 3.2E-25 129.9 11.5 78 4-84 13-92 (104)
50 2d9p_A Polyadenylate-binding p 99.8 8.7E-21 3E-25 130.7 11.3 83 3-85 12-95 (103)
51 2dnm_A SRP46 splicing factor; 99.8 5.9E-21 2E-25 131.6 10.3 81 4-84 11-94 (103)
52 2cq3_A RNA-binding protein 9; 99.8 2E-20 6.9E-25 128.9 12.9 82 4-85 13-95 (103)
53 3mdf_A Peptidyl-prolyl CIS-tra 99.8 5.2E-21 1.8E-25 127.1 9.5 79 3-81 4-85 (85)
54 2dgx_A KIAA0430 protein; RRM d 99.8 8.7E-21 3E-25 128.9 10.7 80 4-83 7-90 (96)
55 1nu4_A U1A RNA binding domain; 99.8 2.3E-21 7.8E-26 132.2 7.5 83 1-83 3-89 (97)
56 2cq0_A Eukaryotic translation 99.8 5.4E-21 1.9E-25 131.8 9.5 81 4-84 13-96 (103)
57 2dgv_A HnRNP M, heterogeneous 99.8 9E-21 3.1E-25 127.9 10.4 81 3-83 5-86 (92)
58 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.2E-21 2.1E-25 131.2 9.7 82 4-85 10-94 (102)
59 2cqd_A RNA-binding region cont 99.8 3.8E-20 1.3E-24 130.3 14.0 79 4-83 15-96 (116)
60 2do0_A HnRNP M, heterogeneous 99.8 2.6E-20 8.8E-25 130.8 13.0 80 4-83 13-94 (114)
61 1x5s_A Cold-inducible RNA-bind 99.8 9.7E-21 3.3E-25 130.2 10.6 81 4-84 10-93 (102)
62 1x5u_A Splicing factor 3B subu 99.8 1.2E-20 4E-25 130.6 11.0 81 4-84 13-96 (105)
63 3bs9_A Nucleolysin TIA-1 isofo 99.8 5.4E-21 1.9E-25 127.6 9.0 80 4-83 4-86 (87)
64 1x5t_A Splicing factor 3B subu 99.8 8.3E-21 2.8E-25 129.1 10.0 81 4-84 3-87 (96)
65 2e5h_A Zinc finger CCHC-type a 99.8 1E-20 3.5E-25 128.2 10.4 78 4-81 14-94 (94)
66 2lkz_A RNA-binding protein 5; 99.8 1.5E-21 5.3E-26 131.6 6.2 79 4-82 7-94 (95)
67 2do4_A Squamous cell carcinoma 99.8 1.5E-20 5E-25 128.9 10.9 80 4-83 15-96 (100)
68 2dnq_A RNA-binding protein 4B; 99.8 2.6E-20 9E-25 125.0 11.7 77 3-84 5-81 (90)
69 2cph_A RNA binding motif prote 99.8 2.8E-20 9.4E-25 129.1 11.9 81 4-84 13-98 (107)
70 2cpz_A CUG triplet repeat RNA- 99.8 1.1E-20 3.9E-25 132.8 10.1 82 4-85 23-107 (115)
71 2cqc_A Arginine/serine-rich sp 99.8 9.9E-21 3.4E-25 128.5 9.3 79 4-82 13-94 (95)
72 1p27_B RNA-binding protein 8A; 99.8 1.2E-20 4E-25 130.8 9.7 80 4-83 21-103 (106)
73 4a8x_A RNA-binding protein wit 99.8 1.6E-20 5.4E-25 125.6 9.9 80 4-83 2-85 (88)
74 1wi8_A EIF-4B, eukaryotic tran 99.8 2.4E-20 8.2E-25 128.7 11.0 79 3-83 12-94 (104)
75 2dnh_A Bruno-like 5, RNA bindi 99.8 2.4E-20 8E-25 129.0 10.8 82 4-85 13-99 (105)
76 1x4h_A RNA-binding protein 28; 99.8 3.3E-20 1.1E-24 129.6 11.5 81 4-84 13-102 (111)
77 1x4c_A Splicing factor, argini 99.8 6.1E-20 2.1E-24 127.5 12.8 77 4-84 13-94 (108)
78 1why_A Hypothetical protein ri 99.8 3E-20 1E-24 126.5 11.0 77 4-83 15-93 (97)
79 2div_A TRNA selenocysteine ass 99.8 1E-20 3.6E-25 129.4 8.5 82 2-83 5-94 (99)
80 2ywk_A Putative RNA-binding pr 99.8 1.6E-20 5.4E-25 127.5 9.2 79 4-82 14-94 (95)
81 2dgt_A RNA-binding protein 30; 99.8 4.6E-20 1.6E-24 124.3 11.4 76 3-83 7-82 (92)
82 3beg_B Splicing factor, argini 99.8 7.8E-21 2.7E-25 133.4 7.9 74 122-202 14-92 (115)
83 2jrs_A RNA-binding protein 39; 99.8 1.8E-20 6.3E-25 129.9 9.6 80 4-83 24-106 (108)
84 1s79_A Lupus LA protein; RRM, 99.8 1.7E-20 5.8E-25 128.6 9.3 78 4-82 9-88 (103)
85 1x4f_A Matrin 3; structural ge 99.8 1.4E-20 4.6E-25 130.0 8.7 78 3-83 22-102 (112)
86 2dgp_A Bruno-like 4, RNA bindi 99.8 3.2E-20 1.1E-24 128.5 10.6 82 3-84 10-97 (106)
87 2kxn_B Transformer-2 protein h 99.8 2E-20 6.7E-25 133.9 9.6 80 4-83 44-126 (129)
88 1oo0_B CG8781-PA, drosophila Y 99.8 2.3E-20 7.8E-25 130.2 9.7 80 4-83 24-106 (110)
89 1h2v_Z 20 kDa nuclear CAP bind 99.8 3.1E-20 1.1E-24 137.7 11.0 82 4-85 37-121 (156)
90 3ns6_A Eukaryotic translation 99.8 9.3E-21 3.2E-25 129.7 7.5 80 4-83 4-93 (100)
91 2dnp_A RNA-binding protein 14; 99.8 5.8E-20 2E-24 123.3 10.9 75 4-83 7-81 (90)
92 3p5t_L Cleavage and polyadenyl 99.8 3.5E-21 1.2E-25 129.3 4.9 77 7-83 2-83 (90)
93 3ucg_A Polyadenylate-binding p 99.8 2.9E-20 1E-24 124.6 9.3 78 5-83 5-85 (89)
94 2khc_A Testis-specific RNP-typ 99.8 2.6E-20 8.8E-25 131.6 9.3 78 4-81 38-118 (118)
95 1x4c_A Splicing factor, argini 99.8 1.8E-19 6E-24 125.1 13.4 80 121-203 12-92 (108)
96 3ulh_A THO complex subunit 4; 99.8 3.1E-20 1.1E-24 128.8 9.5 78 4-81 27-106 (107)
97 2cpi_A CCR4-NOT transcription 99.8 1.5E-20 5.1E-25 131.2 7.8 80 4-83 13-101 (111)
98 2dng_A Eukaryotic translation 99.8 6.1E-20 2.1E-24 126.4 10.8 79 3-83 12-93 (103)
99 2krb_A Eukaryotic translation 99.8 1.4E-20 4.9E-25 123.7 7.2 72 6-77 1-80 (81)
100 2ytc_A PRE-mRNA-splicing facto 99.8 4.3E-20 1.5E-24 122.6 9.5 75 4-81 10-85 (85)
101 2dis_A Unnamed protein product 99.8 1.2E-19 4E-24 126.4 12.1 83 3-85 5-94 (109)
102 2cpj_A Non-POU domain-containi 99.8 5.1E-20 1.8E-24 125.9 10.0 77 4-83 13-89 (99)
103 2cpx_A Hypothetical protein FL 99.8 5.8E-20 2E-24 129.2 10.6 80 4-84 23-106 (115)
104 1x4g_A Nucleolysin TIAR; struc 99.8 1E-19 3.4E-24 126.7 11.6 78 4-84 23-100 (109)
105 2nlw_A Eukaryotic translation 99.8 4.6E-20 1.6E-24 127.4 9.7 80 4-83 13-100 (105)
106 2xnq_A Nuclear polyadenylated 99.8 7.3E-20 2.5E-24 124.4 10.6 75 4-83 20-95 (97)
107 2la6_A RNA-binding protein FUS 99.8 3.5E-20 1.2E-24 126.7 9.0 78 4-81 11-99 (99)
108 2err_A Ataxin-2-binding protei 99.8 3.2E-20 1.1E-24 129.0 8.9 80 4-83 27-107 (109)
109 2cpe_A RNA-binding protein EWS 99.8 4.6E-20 1.6E-24 129.3 9.7 81 4-84 13-104 (113)
110 3s7r_A Heterogeneous nuclear r 99.8 6.5E-20 2.2E-24 122.3 10.0 76 4-80 9-87 (87)
111 3ex7_B RNA-binding protein 8A; 99.8 4.1E-20 1.4E-24 132.1 9.6 81 4-84 20-103 (126)
112 2dhg_A TRNA selenocysteine ass 99.8 6.6E-20 2.2E-24 126.5 10.3 82 3-84 6-91 (104)
113 2jvr_A Nucleolar protein 3; RN 99.8 3E-20 1E-24 128.7 8.4 79 4-83 26-105 (111)
114 2cq2_A Hypothetical protein LO 99.8 5.4E-20 1.8E-24 127.0 9.4 79 2-83 21-106 (114)
115 2fc9_A NCL protein; structure 99.8 6.9E-20 2.4E-24 125.7 9.7 79 4-83 13-91 (101)
116 1u6f_A Tcubp1, RNA-binding pro 99.8 1.3E-19 4.4E-24 131.8 11.6 80 4-83 40-122 (139)
117 2rs2_A Musashi-1, RNA-binding 99.8 1.2E-19 4.2E-24 126.0 10.9 79 4-83 23-104 (109)
118 1whx_A Hypothetical protein ri 99.8 5.4E-20 1.9E-24 128.2 9.1 77 4-83 8-84 (111)
119 2cpd_A Apobec-1 stimulating pr 99.8 2.1E-19 7.2E-24 122.8 11.6 75 4-83 13-89 (99)
120 2jvo_A Nucleolar protein 3; nu 99.8 7E-20 2.4E-24 126.9 9.2 75 4-83 29-103 (108)
121 2dh8_A DAZ-associated protein 99.8 5.5E-20 1.9E-24 127.1 8.5 81 3-84 13-96 (105)
122 2kvi_A Nuclear polyadenylated 99.8 6.2E-20 2.1E-24 124.7 8.5 75 4-83 8-83 (96)
123 3n9u_C Cleavage and polyadenyl 99.8 7E-20 2.4E-24 135.2 9.3 79 5-83 54-137 (156)
124 1fjc_A Nucleolin RBD2, protein 99.8 4.9E-20 1.7E-24 125.2 7.7 78 4-83 14-91 (96)
125 1p1t_A Cleavage stimulation fa 99.8 3.5E-20 1.2E-24 127.9 7.1 80 4-83 6-88 (104)
126 2e5j_A Methenyltetrahydrofolat 99.8 7.6E-20 2.6E-24 124.5 8.7 78 4-83 17-94 (97)
127 2kt5_A RNA and export factor-b 99.8 2E-19 6.7E-24 128.1 11.2 81 4-84 33-115 (124)
128 1x4e_A RNA binding motif, sing 99.8 1.3E-20 4.5E-25 125.1 4.7 79 3-81 2-83 (85)
129 2cqh_A IGF-II mRNA-binding pro 99.8 9.5E-20 3.3E-24 123.0 8.8 77 3-83 5-83 (93)
130 2la4_A Nuclear and cytoplasmic 99.8 6E-20 2.1E-24 126.0 7.9 76 4-82 25-100 (101)
131 2diu_A KIAA0430 protein; struc 99.8 2.7E-19 9.4E-24 117.1 10.6 75 4-85 6-86 (96)
132 2cq4_A RNA binding motif prote 99.8 7.4E-20 2.5E-24 128.4 8.2 78 5-83 24-104 (114)
133 2mss_A Protein (musashi1); RNA 99.8 5.2E-20 1.8E-24 119.2 6.8 72 8-80 1-75 (75)
134 2j76_E EIF-4B, EIF4B, eukaryot 99.8 5.2E-20 1.8E-24 126.0 7.0 78 4-83 17-98 (100)
135 2cqp_A RNA-binding protein 12; 99.8 4E-20 1.4E-24 126.2 6.1 80 4-83 13-95 (98)
136 2ek1_A RNA-binding protein 12; 99.8 3.5E-20 1.2E-24 125.8 5.8 78 4-81 13-93 (95)
137 2fc8_A NCL protein; structure 99.8 1.4E-19 4.7E-24 124.5 8.8 80 4-83 13-92 (102)
138 3egn_A RNA-binding protein 40; 99.8 7.7E-20 2.6E-24 133.6 7.5 81 3-83 42-130 (143)
139 1wf1_A RNA-binding protein RAL 99.8 1.9E-19 6.6E-24 125.4 9.1 74 5-83 26-100 (110)
140 2lea_A Serine/arginine-rich sp 99.8 9.9E-20 3.4E-24 131.3 7.9 80 4-83 45-127 (135)
141 2cqg_A TDP-43, TAR DNA-binding 99.8 5.3E-19 1.8E-23 121.7 11.2 79 4-84 13-94 (103)
142 2m2b_A RNA-binding protein 10; 99.8 1.4E-19 4.8E-24 130.1 8.6 80 3-83 20-108 (131)
143 1uaw_A Mouse-musashi-1; RNP-ty 99.8 6.5E-20 2.2E-24 119.4 6.2 73 7-80 1-76 (77)
144 2dgw_A Probable RNA-binding pr 99.8 3E-19 1E-23 120.1 9.6 78 4-83 8-87 (91)
145 2jwn_A Embryonic polyadenylate 99.8 1.9E-19 6.6E-24 128.2 9.0 78 5-83 35-115 (124)
146 2kn4_A Immunoglobulin G-bindin 99.8 3.9E-19 1.3E-23 132.1 11.0 80 4-83 68-150 (158)
147 1x4b_A Heterogeneous nuclear r 99.8 3.5E-19 1.2E-23 125.3 10.1 79 5-84 26-107 (116)
148 1wg5_A Heterogeneous nuclear r 99.8 4.8E-19 1.6E-23 122.0 10.5 79 4-83 13-94 (104)
149 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 3.3E-19 1.1E-23 129.8 10.0 77 4-80 61-140 (140)
150 2e5g_A U6 snRNA-specific termi 99.8 6.5E-19 2.2E-23 119.1 10.7 77 4-83 6-82 (94)
151 1rk8_A CG8781-PA, CG8781-PA pr 99.8 2.2E-19 7.4E-24 134.3 9.1 81 4-84 70-153 (165)
152 3beg_B Splicing factor, argini 99.8 3.9E-19 1.3E-23 124.7 9.6 76 4-83 14-94 (115)
153 2ki2_A SS-DNA binding protein 99.8 5.3E-20 1.8E-24 123.5 4.8 76 7-83 2-80 (90)
154 1x5p_A Negative elongation fac 99.8 1.2E-18 4.2E-23 118.5 11.6 76 4-84 13-88 (97)
155 1fj7_A Nucleolin RBD1, protein 99.8 7.5E-20 2.6E-24 125.5 5.5 79 4-83 15-95 (101)
156 2i2y_A Fusion protein consists 99.8 4E-19 1.4E-23 130.8 9.6 78 4-83 71-148 (150)
157 1x5o_A RNA binding motif, sing 99.8 4.4E-19 1.5E-23 124.5 9.2 80 4-83 23-112 (114)
158 1wg1_A KIAA1579 protein, homol 99.8 2.6E-19 8.9E-24 119.5 7.5 77 3-83 2-78 (88)
159 2db1_A Heterogeneous nuclear r 99.8 2E-19 6.8E-24 126.8 7.2 79 4-83 15-98 (118)
160 2e44_A Insulin-like growth fac 99.8 9.4E-19 3.2E-23 118.9 10.2 79 4-83 13-92 (96)
161 2cpy_A RNA-binding protein 12; 99.8 2.4E-19 8.2E-24 125.7 7.3 79 4-83 13-94 (114)
162 1sjr_A Polypyrimidine tract-bi 99.8 2.2E-18 7.4E-23 126.2 12.2 77 7-84 47-125 (164)
163 1iqt_A AUF1, heterogeneous nuc 99.8 1.8E-19 6E-24 116.7 5.6 72 8-80 1-75 (75)
164 1wez_A HnRNP H', FTP-3, hetero 99.8 3.9E-19 1.3E-23 121.8 7.5 78 4-83 13-92 (102)
165 2f3j_A RNA and export factor b 99.8 6.5E-19 2.2E-23 132.8 9.3 80 4-83 86-167 (177)
166 3zzy_A Polypyrimidine tract-bi 99.8 2.7E-18 9.4E-23 121.2 11.6 76 7-84 29-107 (130)
167 2hzc_A Splicing factor U2AF 65 99.8 9E-19 3.1E-23 116.7 8.8 73 3-79 3-86 (87)
168 2hgl_A HNRPF protein, heteroge 99.8 2.9E-19 1E-23 128.3 6.7 78 4-82 42-124 (136)
169 2dnn_A RNA-binding protein 12; 99.8 6.2E-19 2.1E-23 121.8 8.0 76 5-82 15-92 (109)
170 1wel_A RNA-binding protein 12; 99.8 5.2E-19 1.8E-23 125.9 7.4 79 4-83 23-104 (124)
171 3q2s_C Cleavage and polyadenyl 99.8 6.1E-19 2.1E-23 138.5 8.4 78 5-82 67-149 (229)
172 2lmi_A GRSF-1, G-rich sequence 99.8 3.9E-19 1.3E-23 123.1 5.8 80 3-83 8-92 (107)
173 2e5i_A Heterogeneous nuclear r 99.8 3.4E-18 1.2E-22 120.2 10.3 77 5-84 22-103 (124)
174 1wf0_A TDP-43, TAR DNA-binding 99.8 1.2E-18 4.2E-23 116.2 6.9 77 3-83 2-78 (88)
175 3d2w_A TAR DNA-binding protein 99.8 2.5E-18 8.5E-23 114.8 8.2 74 4-83 9-84 (89)
176 2hgm_A HNRPF protein, heteroge 99.8 1.9E-18 6.7E-23 122.1 7.8 77 4-82 40-120 (126)
177 2hgn_A Heterogeneous nuclear r 99.8 5.3E-19 1.8E-23 127.4 4.8 78 4-83 44-123 (139)
178 2dha_A FLJ20171 protein; RRM d 99.8 1E-18 3.5E-23 123.2 6.2 79 3-82 20-104 (123)
179 2lcw_A RNA-binding protein FUS 99.6 8E-20 2.7E-24 128.6 0.0 80 4-83 5-95 (116)
180 2fy1_A RNA-binding motif prote 99.7 3.5E-17 1.2E-21 114.8 13.5 80 123-206 6-88 (116)
181 2lea_A Serine/arginine-rich sp 99.7 2.3E-18 8E-23 124.1 7.6 121 45-205 4-128 (135)
182 2xs2_A Deleted in azoospermia- 99.7 1.3E-18 4.5E-23 119.5 5.9 78 4-83 7-86 (102)
183 2jvr_A Nucleolar protein 3; RN 99.7 4.3E-18 1.5E-22 117.8 8.4 81 122-206 26-107 (111)
184 4fxv_A ELAV-like protein 1; RN 99.7 1.1E-17 3.7E-22 113.9 10.1 76 123-202 18-97 (99)
185 1x4a_A Splicing factor, argini 99.7 6.3E-17 2.1E-21 112.4 13.8 83 119-205 17-100 (109)
186 2bz2_A Negative elongation fac 99.7 7E-18 2.4E-22 119.1 8.7 75 4-83 37-111 (121)
187 2dnl_A Cytoplasmic polyadenyla 99.7 1.5E-17 5.1E-22 116.5 10.2 74 4-80 6-85 (114)
188 2cpz_A CUG triplet repeat RNA- 99.7 8.4E-17 2.9E-21 112.9 14.1 83 120-206 21-107 (115)
189 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.3E-17 4.4E-22 124.7 10.2 137 50-205 11-153 (165)
190 2pe8_A Splicing factor 45; RRM 99.7 2.4E-17 8.3E-22 113.1 10.3 80 3-82 5-93 (105)
191 3ex7_B RNA-binding protein 8A; 99.7 1.6E-17 5.6E-22 118.5 9.7 81 121-205 19-103 (126)
192 2d9p_A Polyadenylate-binding p 99.7 7.7E-17 2.6E-21 110.8 12.0 83 120-206 11-95 (103)
193 4f02_A Polyadenylate-binding p 99.7 1.5E-17 5.3E-22 129.6 9.5 79 5-83 102-181 (213)
194 3md3_A Nuclear and cytoplasmic 99.7 2.3E-17 7.8E-22 123.4 10.1 78 4-81 85-165 (166)
195 2dgo_A Cytotoxic granule-assoc 99.7 2.9E-16 9.9E-21 110.1 14.9 85 119-207 10-98 (115)
196 2cqi_A Nucleolysin TIAR; RNA r 99.7 1.9E-16 6.3E-21 108.9 13.4 83 120-206 11-95 (103)
197 2wbr_A GW182, gawky, LD47780P; 99.7 4.5E-17 1.5E-21 105.7 9.6 73 124-202 7-79 (89)
198 2cq3_A RNA-binding protein 9; 99.7 1.9E-16 6.5E-21 108.8 13.5 83 119-205 10-94 (103)
199 2qfj_A FBP-interacting repress 99.7 3.5E-17 1.2E-21 127.8 10.9 80 4-83 123-205 (216)
200 2do4_A Squamous cell carcinoma 99.7 1.5E-16 5.2E-21 108.7 12.8 83 120-206 13-98 (100)
201 2do0_A HnRNP M, heterogeneous 99.7 2.6E-16 9E-21 110.2 14.2 81 121-205 12-95 (114)
202 2e5j_A Methenyltetrahydrofolat 99.7 1.2E-16 4.2E-21 108.5 11.9 80 120-204 15-94 (97)
203 2j8a_A Histone-lysine N-methyl 99.7 1.1E-17 3.7E-22 115.9 6.6 78 6-83 2-96 (136)
204 3u1l_A PRE-mRNA-splicing facto 99.7 2.2E-17 7.5E-22 129.0 9.0 77 4-83 132-229 (240)
205 2cq0_A Eukaryotic translation 99.7 1.3E-16 4.4E-21 109.7 11.9 84 120-207 11-98 (103)
206 1sjq_A Polypyrimidine tract-bi 99.7 7.2E-17 2.5E-21 109.7 10.3 76 122-203 14-91 (105)
207 4f25_A Polyadenylate-binding p 99.7 5.6E-17 1.9E-21 113.7 9.9 77 124-204 5-83 (115)
208 2dnh_A Bruno-like 5, RNA bindi 99.7 2.7E-16 9.2E-21 108.5 13.0 81 122-206 13-99 (105)
209 2e5h_A Zinc finger CCHC-type a 99.7 1.2E-16 4E-21 108.0 10.9 79 120-202 12-94 (94)
210 1fje_B Nucleolin RBD12, protei 99.7 3.4E-17 1.2E-21 123.6 9.0 78 4-83 97-174 (175)
211 1x4d_A Matrin 3; structural ge 99.7 5.6E-17 1.9E-21 110.3 8.9 76 122-203 13-91 (102)
212 2dnm_A SRP46 splicing factor; 99.7 1.9E-16 6.4E-21 108.8 11.6 82 120-205 9-94 (103)
213 3s8s_A Histone-lysine N-methyl 99.7 1.1E-16 3.8E-21 111.0 10.4 77 123-203 5-85 (110)
214 2dit_A HIV TAT specific factor 99.7 1.2E-16 4.2E-21 111.4 10.4 79 4-83 13-102 (112)
215 2g4b_A Splicing factor U2AF 65 99.7 4E-17 1.4E-21 122.8 8.5 76 5-80 93-171 (172)
216 2yh0_A Splicing factor U2AF 65 99.7 6.2E-17 2.1E-21 124.6 9.6 80 4-83 112-194 (198)
217 1wi8_A EIF-4B, eukaryotic tran 99.7 2.2E-16 7.4E-21 108.7 11.2 83 119-207 10-97 (104)
218 1whw_A Hypothetical protein ri 99.7 3.4E-16 1.2E-20 106.7 12.0 80 123-206 7-90 (99)
219 2ywk_A Putative RNA-binding pr 99.7 1.6E-16 5.6E-21 107.5 10.3 80 119-202 11-93 (95)
220 2cqc_A Arginine/serine-rich sp 99.7 2.9E-16 9.9E-21 106.2 11.5 80 119-202 10-93 (95)
221 2cjk_A Nuclear polyadenylated 99.7 3.6E-17 1.2E-21 122.5 7.6 78 5-83 86-166 (167)
222 2dnq_A RNA-binding protein 4B; 99.7 5.1E-16 1.7E-20 103.9 12.4 77 122-206 6-82 (90)
223 1x5u_A Splicing factor 3B subu 99.7 5.2E-16 1.8E-20 107.0 12.8 81 120-204 11-95 (105)
224 1x5s_A Cold-inducible RNA-bind 99.7 3.3E-16 1.1E-20 107.4 11.7 80 122-205 10-93 (102)
225 2dnz_A Probable RNA-binding pr 99.7 4.8E-16 1.6E-20 105.1 12.4 80 123-206 4-87 (95)
226 2dgx_A KIAA0430 protein; RRM d 99.7 2.7E-16 9.3E-21 106.5 10.7 79 123-205 8-91 (96)
227 2cph_A RNA binding motif prote 99.7 6.8E-16 2.3E-20 106.8 12.9 83 120-206 11-99 (107)
228 1l3k_A Heterogeneous nuclear r 99.7 1E-16 3.5E-21 123.2 9.5 80 5-85 103-185 (196)
229 2dgs_A DAZ-associated protein 99.7 6.6E-16 2.3E-20 105.3 12.5 80 122-206 8-91 (99)
230 1x4h_A RNA-binding protein 28; 99.7 7.5E-16 2.5E-20 107.3 12.9 83 120-206 11-103 (111)
231 2dng_A Eukaryotic translation 99.7 7E-16 2.4E-20 105.9 12.6 82 119-206 10-95 (103)
232 3r27_A HnRNP L, heterogeneous 99.7 1.9E-16 6.4E-21 106.6 9.3 76 122-203 19-96 (100)
233 2hvz_A Splicing factor, argini 99.7 2.6E-16 8.9E-21 107.7 10.3 76 125-205 1-76 (101)
234 2dgp_A Bruno-like 4, RNA bindi 99.7 5.4E-16 1.8E-20 107.1 12.0 83 120-206 9-98 (106)
235 1wex_A Hypothetical protein (r 99.7 6E-16 2E-20 105.9 12.0 77 121-203 12-90 (104)
236 2voo_A Lupus LA protein; RNA-b 99.7 1.4E-16 4.6E-21 121.9 9.7 77 6-83 109-187 (193)
237 2cq1_A PTB-like protein L; RRM 99.7 3.8E-16 1.3E-20 106.2 10.8 78 120-203 11-90 (101)
238 4a8x_A RNA-binding protein wit 99.7 1.9E-16 6.5E-21 105.6 9.2 78 124-205 4-86 (88)
239 1why_A Hypothetical protein ri 99.7 8E-16 2.7E-20 104.4 12.4 81 122-206 15-95 (97)
240 2ad9_A Polypyrimidine tract-bi 99.7 2E-16 6.9E-21 110.3 9.6 78 120-203 27-106 (119)
241 1b7f_A Protein (SXL-lethal pro 99.7 1.5E-16 5E-21 119.3 9.6 77 4-80 87-168 (168)
242 3bs9_A Nucleolysin TIA-1 isofo 99.7 2.6E-16 9E-21 104.6 9.8 78 123-204 5-86 (87)
243 1x4f_A Matrin 3; structural ge 99.7 2E-16 6.8E-21 109.1 9.4 78 120-203 21-101 (112)
244 2kxn_B Transformer-2 protein h 99.7 3.4E-16 1.2E-20 111.8 10.8 81 120-204 42-126 (129)
245 3nmr_A Cugbp ELAV-like family 99.7 1.5E-16 5.2E-21 119.9 9.4 77 5-81 94-175 (175)
246 2cqb_A Peptidyl-prolyl CIS-tra 99.7 3.2E-16 1.1E-20 107.5 10.1 81 122-206 10-94 (102)
247 2cpj_A Non-POU domain-containi 99.7 8.4E-16 2.9E-20 104.7 12.0 79 121-205 12-90 (99)
248 2cpf_A RNA binding motif prote 99.7 4.6E-16 1.6E-20 105.9 10.6 79 123-205 4-89 (98)
249 2dnp_A RNA-binding protein 14; 99.7 5.3E-16 1.8E-20 103.8 10.7 77 122-206 7-83 (90)
250 2dhg_A TRNA selenocysteine ass 99.7 1.4E-15 4.8E-20 104.6 13.1 81 122-206 7-92 (104)
251 2dgu_A Heterogeneous nuclear r 99.7 1.2E-15 4E-20 104.8 12.5 76 123-206 10-85 (103)
252 2dgt_A RNA-binding protein 30; 99.7 8.5E-16 2.9E-20 103.2 11.5 77 121-205 7-83 (92)
253 1x5t_A Splicing factor 3B subu 99.7 4E-16 1.4E-20 105.8 10.0 80 123-206 4-88 (96)
254 2e44_A Insulin-like growth fac 99.7 6.3E-16 2.1E-20 104.8 10.9 79 121-203 12-91 (96)
255 1x4g_A Nucleolysin TIAR; struc 99.7 8.2E-16 2.8E-20 106.7 11.6 79 122-206 23-101 (109)
256 3mdf_A Peptidyl-prolyl CIS-tra 99.7 3.9E-16 1.3E-20 103.3 9.6 77 122-202 5-85 (85)
257 2cpi_A CCR4-NOT transcription 99.7 4.4E-16 1.5E-20 108.4 10.1 81 121-205 12-102 (111)
258 1wf1_A RNA-binding protein RAL 99.7 1.8E-15 6.3E-20 105.1 13.3 74 122-203 25-99 (110)
259 2cpx_A Hypothetical protein FL 99.7 2.3E-15 7.7E-20 105.5 13.6 81 122-206 23-107 (115)
260 3md1_A Nuclear and cytoplasmic 99.7 7.2E-16 2.4E-20 101.5 10.3 76 125-204 2-81 (83)
261 2dgv_A HnRNP M, heterogeneous 99.7 1.1E-15 3.8E-20 102.7 11.3 79 122-204 6-86 (92)
262 2dh8_A DAZ-associated protein 99.7 1.4E-15 4.8E-20 104.8 12.1 80 120-204 12-95 (105)
263 2cpd_A Apobec-1 stimulating pr 99.7 2.2E-15 7.5E-20 102.7 12.7 77 120-204 11-89 (99)
264 2jvo_A Nucleolar protein 3; nu 99.7 4.6E-16 1.6E-20 107.6 9.4 78 121-206 28-105 (108)
265 2khc_A Testis-specific RNP-typ 99.7 1.6E-15 5.5E-20 106.8 12.4 79 120-202 36-118 (118)
266 1fxl_A Paraneoplastic encephal 99.7 3.4E-16 1.2E-20 117.1 9.4 76 5-80 87-167 (167)
267 2x1f_A MRNA 3'-END-processing 99.7 5.5E-16 1.9E-20 105.0 9.6 77 124-204 2-82 (96)
268 2ytc_A PRE-mRNA-splicing facto 99.7 9.1E-16 3.1E-20 101.5 10.4 75 122-202 10-85 (85)
269 1p27_B RNA-binding protein 8A; 99.7 1E-15 3.4E-20 105.7 11.0 79 121-203 20-102 (106)
270 3pgw_A U1-A; protein-RNA compl 99.7 4.4E-16 1.5E-20 126.6 10.5 76 4-81 205-281 (282)
271 2cpe_A RNA-binding protein EWS 99.7 1.2E-15 4.1E-20 106.6 11.3 82 121-206 12-105 (113)
272 2la6_A RNA-binding protein FUS 99.7 1.5E-15 5.3E-20 103.4 11.6 80 119-202 8-99 (99)
273 2lxi_A RNA-binding protein 10; 99.7 1.7E-16 5.9E-21 106.3 6.5 76 125-204 2-83 (91)
274 2cqd_A RNA-binding region cont 99.7 2.1E-15 7.3E-20 105.8 12.4 80 119-203 12-95 (116)
275 2jrs_A RNA-binding protein 39; 99.7 4.3E-15 1.5E-19 102.8 13.7 80 120-203 22-105 (108)
276 2cqp_A RNA-binding protein 12; 99.7 5.3E-16 1.8E-20 105.6 8.9 79 122-204 13-95 (98)
277 3v4m_A Splicing factor U2AF 65 99.6 5E-16 1.7E-20 106.6 8.6 80 3-82 2-96 (105)
278 2div_A TRNA selenocysteine ass 99.6 1.5E-15 5.3E-20 103.4 11.0 79 122-204 7-94 (99)
279 2lkz_A RNA-binding protein 5; 99.6 2.7E-16 9.2E-21 105.8 7.1 81 123-203 8-94 (95)
280 1sjr_A Polypyrimidine tract-bi 99.6 1.2E-15 3.9E-20 111.8 10.8 79 123-203 45-123 (164)
281 1u6f_A Tcubp1, RNA-binding pro 99.6 3.5E-15 1.2E-19 108.2 13.4 83 120-206 38-124 (139)
282 3ulh_A THO complex subunit 4; 99.6 1.1E-15 3.7E-20 105.8 10.1 78 121-202 26-106 (107)
283 2fc9_A NCL protein; structure 99.6 8.5E-16 2.9E-20 105.1 9.4 77 121-204 12-91 (101)
284 2adc_A Polypyrimidine tract-bi 99.6 8.3E-16 2.8E-20 121.1 10.5 77 5-83 150-228 (229)
285 1qm9_A Polypyrimidine tract-bi 99.6 3.6E-16 1.2E-20 120.4 8.3 78 4-83 118-197 (198)
286 1x5o_A RNA binding motif, sing 99.6 4.9E-15 1.7E-19 103.6 13.3 82 121-202 22-110 (114)
287 3p5t_L Cleavage and polyadenyl 99.6 4.4E-16 1.5E-20 104.2 7.1 77 125-205 2-84 (90)
288 2err_A Ataxin-2-binding protei 99.6 1.1E-15 3.9E-20 105.9 9.3 79 121-203 26-106 (109)
289 1oo0_B CG8781-PA, drosophila Y 99.6 1.2E-15 4.1E-20 106.1 9.4 80 121-204 23-106 (110)
290 2kvi_A Nuclear polyadenylated 99.6 1.2E-15 4.1E-20 103.3 9.1 75 122-204 8-83 (96)
291 2hgl_A HNRPF protein, heteroge 99.6 6.6E-16 2.2E-20 110.8 8.2 79 119-202 39-123 (136)
292 1x5p_A Negative elongation fac 99.6 5.8E-15 2E-19 100.1 12.5 78 121-206 12-89 (97)
293 2e5i_A Heterogeneous nuclear r 99.6 8.9E-15 3E-19 102.8 13.6 76 124-203 25-101 (124)
294 3tyt_A Heterogeneous nuclear r 99.6 3.9E-16 1.3E-20 120.6 7.4 77 4-80 121-204 (205)
295 1x4e_A RNA binding motif, sing 99.6 5.4E-16 1.8E-20 102.6 7.1 75 123-201 4-82 (85)
296 1s79_A Lupus LA protein; RRM, 99.6 1.9E-15 6.5E-20 103.4 9.9 74 123-201 10-86 (103)
297 1wg5_A Heterogeneous nuclear r 99.6 2.3E-15 7.9E-20 103.5 10.4 79 120-203 11-93 (104)
298 2d9o_A DNAJ (HSP40) homolog, s 99.6 5.3E-15 1.8E-19 100.1 11.8 77 4-84 8-91 (100)
299 1wez_A HnRNP H', FTP-3, hetero 99.6 3.2E-15 1.1E-19 102.2 10.8 77 121-203 12-91 (102)
300 3lqv_A PRE-mRNA branch site pr 99.6 2.7E-15 9.3E-20 105.1 10.6 77 122-202 6-83 (115)
301 2a3j_A U1 small nuclear ribonu 99.6 3E-15 1E-19 106.1 10.9 79 122-204 27-110 (127)
302 1h2v_Z 20 kDa nuclear CAP bind 99.6 3.7E-15 1.3E-19 110.3 11.8 78 122-203 37-118 (156)
303 2dgw_A Probable RNA-binding pr 99.6 3.8E-15 1.3E-19 99.8 10.7 78 122-205 8-88 (91)
304 2xnq_A Nuclear polyadenylated 99.6 3E-15 1E-19 101.5 10.2 76 120-203 18-94 (97)
305 3ns6_A Eukaryotic translation 99.6 1E-15 3.5E-20 104.4 7.8 75 124-202 6-91 (100)
306 2db1_A Heterogeneous nuclear r 99.6 1.4E-15 4.8E-20 107.0 8.6 79 119-202 12-96 (118)
307 2kt5_A RNA and export factor-b 99.6 1.6E-14 5.3E-19 102.6 14.0 80 120-203 31-113 (124)
308 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 4.5E-15 1.5E-19 107.8 11.5 78 120-201 59-140 (140)
309 2hgn_A Heterogeneous nuclear r 99.6 3.6E-16 1.2E-20 112.5 5.4 78 121-204 43-123 (139)
310 2la4_A Nuclear and cytoplasmic 99.6 3E-15 1E-19 102.4 9.8 75 122-202 25-99 (101)
311 1whx_A Hypothetical protein ri 99.6 1.2E-15 4.3E-20 106.0 7.7 75 123-203 9-83 (111)
312 2cqg_A TDP-43, TAR DNA-binding 99.6 1.8E-14 6.2E-19 98.8 13.5 79 120-204 11-93 (103)
313 1wel_A RNA-binding protein 12; 99.6 2E-15 6.9E-20 107.2 8.8 78 120-202 21-102 (124)
314 2ek1_A RNA-binding protein 12; 99.6 1E-15 3.4E-20 103.6 6.7 76 123-202 14-93 (95)
315 2cq2_A Hypothetical protein LO 99.6 2.5E-15 8.6E-20 103.6 8.7 80 122-203 23-105 (114)
316 2cqh_A IGF-II mRNA-binding pro 99.6 3.9E-15 1.3E-19 100.2 9.5 78 123-207 7-86 (93)
317 2cq4_A RNA binding motif prote 99.6 3.5E-15 1.2E-19 104.4 9.5 75 123-202 24-102 (114)
318 2m2b_A RNA-binding protein 10; 99.6 6.4E-15 2.2E-19 105.6 10.8 77 122-203 21-107 (131)
319 3ucg_A Polyadenylate-binding p 99.6 6.3E-15 2.2E-19 98.3 10.1 75 124-203 6-84 (89)
320 2diu_A KIAA0430 protein; struc 99.6 6.6E-15 2.2E-19 96.4 9.7 70 125-204 10-84 (96)
321 3n9u_C Cleavage and polyadenyl 99.6 4.9E-15 1.7E-19 109.1 10.3 76 123-202 54-135 (156)
322 2e5g_A U6 snRNA-specific termi 99.6 1.3E-14 4.4E-19 97.8 11.6 74 123-203 7-81 (94)
323 1p1t_A Cleavage stimulation fa 99.6 6E-15 2.1E-19 101.4 10.0 78 123-204 7-88 (104)
324 2krb_A Eukaryotic translation 99.6 2.1E-15 7.3E-20 98.7 7.3 70 125-198 2-80 (81)
325 2nlw_A Eukaryotic translation 99.6 5.2E-15 1.8E-19 101.8 9.4 76 123-202 14-98 (105)
326 2dnn_A RNA-binding protein 12; 99.6 4.2E-15 1.4E-19 102.5 8.8 75 122-202 14-91 (109)
327 2jwn_A Embryonic polyadenylate 99.6 7E-15 2.4E-19 104.4 10.1 76 123-203 35-114 (124)
328 3s7r_A Heterogeneous nuclear r 99.6 1E-14 3.6E-19 96.8 10.2 75 122-201 9-87 (87)
329 2cpy_A RNA-binding protein 12; 99.6 3E-15 1E-19 104.7 7.9 77 121-202 12-92 (114)
330 3zzy_A Polypyrimidine tract-bi 99.6 5E-15 1.7E-19 104.5 9.0 78 123-203 27-105 (130)
331 3tht_A Alkylated DNA repair pr 99.6 3.6E-15 1.2E-19 122.6 9.4 77 2-81 14-97 (345)
332 2fc8_A NCL protein; structure 99.6 1.7E-14 5.8E-19 98.8 11.4 81 120-207 11-95 (102)
333 1x4b_A Heterogeneous nuclear r 99.6 1.2E-14 4.2E-19 101.9 10.9 79 123-206 26-108 (116)
334 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.9E-15 1E-19 102.2 7.1 78 120-203 15-97 (100)
335 1uaw_A Mouse-musashi-1; RNP-ty 99.6 4.6E-15 1.6E-19 96.1 7.4 72 125-201 1-76 (77)
336 1jmt_A Splicing factor U2AF 35 99.6 8.6E-16 2.9E-20 105.2 4.1 69 12-80 21-103 (104)
337 2mss_A Protein (musashi1); RNA 99.6 4.5E-15 1.5E-19 95.7 7.3 71 126-201 1-75 (75)
338 1nu4_A U1A RNA binding domain; 99.6 5.1E-15 1.7E-19 100.4 7.4 79 122-204 6-89 (97)
339 3ue2_A Poly(U)-binding-splicin 99.6 8.6E-15 2.9E-19 102.3 8.6 79 4-82 18-108 (118)
340 1fjc_A Nucleolin RBD2, protein 99.6 5.5E-15 1.9E-19 100.1 7.4 78 121-203 13-90 (96)
341 2ki2_A SS-DNA binding protein 99.6 3.2E-15 1.1E-19 100.0 6.0 74 125-203 2-79 (90)
342 2hgm_A HNRPF protein, heteroge 99.6 9.7E-15 3.3E-19 103.1 8.6 77 120-202 38-119 (126)
343 2rs2_A Musashi-1, RNA-binding 99.6 1.7E-14 5.7E-19 100.0 9.6 79 122-205 23-105 (109)
344 2dis_A Unnamed protein product 99.6 3.6E-14 1.2E-18 98.4 11.4 78 123-204 7-92 (109)
345 2lmi_A GRSF-1, G-rich sequence 99.6 6.3E-15 2.2E-19 101.8 7.4 76 122-202 9-90 (107)
346 2hzc_A Splicing factor U2AF 65 99.6 1.7E-14 5.8E-19 95.8 8.6 71 123-200 5-86 (87)
347 3q2s_C Cleavage and polyadenyl 99.6 1.7E-14 5.8E-19 113.1 9.9 76 123-202 67-148 (229)
348 1fj7_A Nucleolin RBD1, protein 99.6 2.7E-14 9.1E-19 97.6 9.7 76 123-204 16-95 (101)
349 3sde_A Paraspeckle component 1 99.5 1.5E-14 5.3E-19 116.1 9.6 80 4-83 94-179 (261)
350 2f3j_A RNA and export factor b 99.5 2.7E-14 9.4E-19 107.4 10.2 78 121-202 85-165 (177)
351 1wg1_A KIAA1579 protein, homol 99.5 9.5E-15 3.3E-19 97.2 6.8 73 124-203 5-77 (88)
352 3s6e_A RNA-binding protein 39; 99.5 2.6E-14 8.9E-19 99.1 8.7 78 4-82 5-92 (114)
353 3egn_A RNA-binding protein 40; 99.5 2.2E-14 7.6E-19 104.5 8.7 81 122-206 43-132 (143)
354 2bz2_A Negative elongation fac 99.5 4.3E-14 1.5E-18 99.6 9.5 77 121-205 36-112 (121)
355 2dha_A FLJ20171 protein; RRM d 99.5 1.8E-14 6.2E-19 101.4 7.0 77 121-202 20-103 (123)
356 1iqt_A AUF1, heterogeneous nuc 99.5 1.9E-14 6.6E-19 92.7 6.2 70 126-200 1-74 (75)
357 2lcw_A RNA-binding protein FUS 99.2 2.1E-15 7.1E-20 105.9 0.0 81 123-207 6-98 (116)
358 3d2w_A TAR DNA-binding protein 99.5 6.1E-14 2.1E-18 93.3 7.0 77 120-203 7-83 (89)
359 2xs2_A Deleted in azoospermia- 99.5 7.2E-14 2.5E-18 95.6 7.2 74 123-202 8-84 (102)
360 1wf0_A TDP-43, TAR DNA-binding 99.5 5.9E-14 2E-18 93.3 6.5 75 123-204 4-78 (88)
361 2dit_A HIV TAT specific factor 99.5 7.2E-13 2.5E-17 92.1 12.3 79 121-203 12-101 (112)
362 2voo_A Lupus LA protein; RNA-b 99.5 6.7E-13 2.3E-17 101.3 12.6 74 124-202 109-185 (193)
363 2j8a_A Histone-lysine N-methyl 99.5 2.6E-13 9E-18 94.0 8.2 74 125-202 3-94 (136)
364 2pe8_A Splicing factor 45; RRM 99.4 5.7E-13 1.9E-17 91.2 9.7 77 122-202 6-92 (105)
365 1owx_A Lupus LA protein, SS-B, 99.4 4.8E-13 1.6E-17 92.8 9.3 76 4-82 16-95 (121)
366 3u1l_A PRE-mRNA-splicing facto 99.4 2.4E-13 8.1E-18 106.2 8.5 82 122-205 132-230 (240)
367 2dnl_A Cytoplasmic polyadenyla 99.4 2.9E-13 1E-17 94.5 8.2 64 123-187 7-80 (114)
368 3v4m_A Splicing factor U2AF 65 99.3 2.4E-12 8.1E-17 88.1 7.4 76 123-202 4-95 (105)
369 2dnr_A Synaptojanin-1; RRM dom 99.3 4.2E-12 1.4E-16 82.4 7.9 75 3-83 4-86 (91)
370 3ue2_A Poly(U)-binding-splicin 99.3 3.7E-12 1.3E-16 88.8 7.5 76 123-202 19-107 (118)
371 3s6e_A RNA-binding protein 39; 99.3 7.4E-12 2.5E-16 86.7 8.5 77 122-202 5-91 (114)
372 3tht_A Alkylated DNA repair pr 99.3 5.6E-12 1.9E-16 103.7 7.6 67 120-188 14-82 (345)
373 1jmt_A Splicing factor U2AF 35 99.2 2.9E-12 9.8E-17 87.6 3.2 69 129-201 20-103 (104)
374 2d9o_A DNAJ (HSP40) homolog, s 99.2 3.2E-10 1.1E-14 76.5 13.1 74 125-205 11-91 (100)
375 1ufw_A Synaptojanin 2; RNP dom 99.2 2.9E-11 1E-15 78.8 5.1 73 3-81 12-93 (95)
376 1owx_A Lupus LA protein, SS-B, 99.1 2E-10 7E-15 79.5 8.4 75 120-200 14-92 (121)
377 3dxb_A Thioredoxin N-terminall 99.0 6.2E-10 2.1E-14 86.9 7.7 77 6-82 124-212 (222)
378 2l9w_A U4/U6 snRNA-associated- 99.0 3.1E-09 1E-13 70.6 8.5 74 4-80 19-97 (117)
379 2dnr_A Synaptojanin-1; RRM dom 99.0 1.8E-09 6E-14 70.1 7.2 72 124-204 7-86 (91)
380 1ufw_A Synaptojanin 2; RNP dom 98.8 1.3E-08 4.3E-13 66.4 7.0 70 123-201 14-92 (95)
381 2dhx_A Poly (ADP-ribose) polym 98.8 1.1E-07 3.9E-12 62.7 10.4 74 4-83 6-84 (104)
382 3dxb_A Thioredoxin N-terminall 98.6 9.5E-08 3.3E-12 74.4 7.4 63 136-202 141-211 (222)
383 1wey_A Calcipressin 1; structu 98.5 7.5E-07 2.6E-11 59.1 8.7 77 4-83 3-84 (104)
384 2l9w_A U4/U6 snRNA-associated- 98.4 1.6E-06 5.3E-11 57.7 8.6 71 123-199 20-95 (117)
385 1wwh_A Nucleoporin 35, nucleop 98.0 3.2E-05 1.1E-09 52.7 8.4 72 5-81 23-95 (119)
386 1uw4_A UPF3X; nonsense mediate 98.0 2.9E-05 9.9E-10 50.6 7.3 65 7-71 2-71 (91)
387 1whv_A Poly(A)-specific ribonu 97.9 2.3E-05 7.7E-10 51.1 5.5 54 6-65 16-69 (100)
388 3ctr_A Poly(A)-specific ribonu 97.9 2.5E-05 8.7E-10 51.0 5.5 54 7-66 7-60 (101)
389 1wey_A Calcipressin 1; structu 97.8 0.00012 4.1E-09 48.5 7.4 72 125-202 6-82 (104)
390 1uw4_A UPF3X; nonsense mediate 97.6 0.0005 1.7E-08 44.8 8.3 65 125-189 2-72 (91)
391 2dhx_A Poly (ADP-ribose) polym 97.5 0.00064 2.2E-08 44.9 7.9 54 124-181 8-66 (104)
392 1whv_A Poly(A)-specific ribonu 97.4 0.00096 3.3E-08 43.5 8.0 54 125-183 17-70 (100)
393 3pq1_A Poly(A) RNA polymerase; 97.3 0.00012 4E-09 62.5 3.5 62 6-71 53-114 (464)
394 2l08_A Regulator of nonsense t 97.3 0.00028 9.4E-09 46.3 4.1 67 5-71 8-79 (97)
395 3p3d_A Nucleoporin 53; structu 97.2 0.00073 2.5E-08 46.7 6.0 76 5-82 6-98 (132)
396 1wwh_A Nucleoporin 35, nucleop 97.2 0.0017 5.9E-08 44.2 7.7 63 122-188 22-84 (119)
397 3ctr_A Poly(A)-specific ribonu 97.1 0.0016 5.4E-08 42.6 6.1 53 126-183 8-60 (101)
398 2l08_A Regulator of nonsense t 96.6 0.003 1E-07 41.3 4.8 65 125-189 10-80 (97)
399 3pq1_A Poly(A) RNA polymerase; 95.7 0.0076 2.6E-07 51.4 4.0 57 123-181 52-108 (464)
400 3p3d_A Nucleoporin 53; structu 94.5 0.06 2.1E-06 37.2 4.8 72 124-201 7-96 (132)
401 3d45_A Poly(A)-specific ribonu 93.5 0.18 6.2E-06 43.8 7.0 55 6-66 440-494 (507)
402 2g0c_A ATP-dependent RNA helic 92.8 0.54 1.9E-05 29.0 6.8 68 8-81 2-75 (76)
403 4eyt_A Telomerase associated p 89.9 2.5 8.5E-05 26.7 8.0 69 4-79 10-78 (129)
404 3d45_A Poly(A)-specific ribonu 89.0 1.4 4.7E-05 38.3 7.9 56 124-184 440-495 (507)
405 4eyt_A Telomerase associated p 82.4 7.2 0.00025 24.6 7.8 56 123-182 11-66 (129)
406 4e8u_A Putative uncharacterize 72.8 5.3 0.00018 28.9 4.5 56 8-63 14-81 (172)
407 3ts2_A Protein LIN-28 homolog 60.0 1.7 5.8E-05 30.9 -0.2 28 21-53 2-29 (148)
408 3j21_T 50S ribosomal protein L 58.7 31 0.0011 21.7 5.9 54 10-63 26-81 (86)
409 3lpe_A Putative transcription 58.5 32 0.0011 21.8 6.3 34 33-68 40-73 (92)
410 3fry_A Probable copper-exporti 52.8 32 0.0011 20.1 5.8 56 6-65 6-61 (73)
411 2e5p_A Protein PHF1, PHD finge 51.7 8.6 0.00029 22.8 1.9 20 31-55 28-47 (68)
412 1vq8_S 50S ribosomal protein L 51.6 38 0.0013 21.3 5.1 54 10-63 25-80 (85)
413 3h7h_B Transcription elongatio 45.6 26 0.00088 23.1 3.8 35 33-69 41-75 (106)
414 2m0o_A PHD finger protein 1; t 44.8 12 0.00043 22.8 1.9 21 31-56 45-65 (79)
415 2eqj_A Metal-response element- 44.0 14 0.00048 21.9 2.0 11 45-55 41-51 (66)
416 3uzu_A Ribosomal RNA small sub 43.0 17 0.0006 28.6 3.1 32 7-38 115-146 (279)
417 3j21_T 50S ribosomal protein L 40.4 67 0.0023 20.2 7.4 57 126-182 24-83 (86)
418 3swz_A Steroid 17-alpha-hydrox 40.1 46 0.0016 28.1 5.6 59 9-74 17-79 (494)
419 3u5e_X 60S ribosomal protein L 38.8 77 0.0026 22.1 5.4 51 13-63 85-137 (142)
420 2zkr_s 60S ribosomal protein L 37.9 82 0.0028 22.3 5.5 53 11-63 97-151 (156)
421 4a17_R RPL23A, 60S ribosomal p 37.6 79 0.0027 22.2 5.3 51 13-63 93-145 (150)
422 4bby_A Alkyldihydroxyacetoneph 37.6 30 0.001 31.0 4.1 53 13-65 350-408 (658)
423 2cs4_A Protein C12ORF2; GTP bi 36.8 22 0.00075 22.9 2.3 22 11-32 21-43 (95)
424 3fut_A Dimethyladenosine trans 36.5 29 0.001 27.2 3.5 31 7-38 111-141 (271)
425 3u5e_X 60S ribosomal protein L 36.3 1.1E+02 0.0037 21.3 6.7 56 126-181 80-138 (142)
426 3iz5_X 60S ribosomal protein L 35.3 69 0.0024 22.6 4.8 51 13-63 95-147 (152)
427 3tqs_A Ribosomal RNA small sub 34.7 20 0.0007 27.7 2.3 31 8-38 98-128 (255)
428 3iz5_X 60S ribosomal protein L 34.5 1.2E+02 0.0041 21.4 6.0 56 126-181 90-148 (152)
429 4a17_R RPL23A, 60S ribosomal p 33.9 1.2E+02 0.0042 21.3 6.7 56 126-181 88-146 (150)
430 2od0_A Hypothetical protein VP 33.3 42 0.0014 21.8 3.4 22 18-39 4-25 (105)
431 1qyr_A KSGA, high level kasuga 33.3 41 0.0014 25.9 3.8 32 7-38 91-122 (252)
432 2g9o_A Copper-transporting ATP 33.0 85 0.0029 19.2 5.7 57 6-65 4-64 (90)
433 4hcz_A PHD finger protein 1; p 32.7 28 0.00095 20.0 2.0 21 31-56 22-42 (58)
434 2exu_A Transcription initiatio 32.7 43 0.0015 24.9 3.6 30 42-71 146-175 (200)
435 1ytr_A Bacteriocin plantaricin 32.1 25 0.00086 15.8 1.4 14 18-31 12-25 (26)
436 1wvf_A 4-cresol dehydrogenase 31.6 35 0.0012 29.5 3.5 41 22-62 217-261 (520)
437 3tbg_A Cytochrome P450 2D6; mo 31.5 35 0.0012 28.5 3.5 48 10-63 20-70 (479)
438 4a4j_A Pacszia, cation-transpo 31.2 74 0.0025 17.9 5.9 54 7-63 4-60 (69)
439 2yko_A LINE-1 ORF1P; RNA-bindi 31.1 55 0.0019 24.9 4.0 77 6-82 52-151 (233)
440 3dxs_X Copper-transporting ATP 29.7 83 0.0028 18.0 6.7 57 6-65 3-63 (74)
441 3ftd_A Dimethyladenosine trans 28.6 41 0.0014 25.8 3.1 31 7-37 96-126 (249)
442 1i4w_A Mitochondrial replicati 28.0 50 0.0017 27.0 3.6 22 8-29 144-165 (353)
443 2w7a_A LINE-1 ORF1P; RNA-bindi 27.4 81 0.0028 20.5 3.8 73 7-79 4-99 (100)
444 3fjv_A Uncharacterized novel p 26.0 65 0.0022 23.8 3.5 47 19-69 66-112 (194)
445 3lfj_A Manxb, phosphotransfera 25.5 1.6E+02 0.0055 21.5 5.6 34 44-81 96-129 (187)
446 3pm0_A Cypib1, cytochrome P450 25.0 1.2E+02 0.0042 25.4 5.8 48 10-63 19-68 (507)
447 2nn4_A Hypothetical protein YQ 24.6 19 0.00064 21.8 0.3 18 19-36 4-21 (72)
448 3p8b_B Transcription antitermi 24.2 65 0.0022 22.5 3.2 34 33-68 33-66 (152)
449 2gu3_A YPMB protein; APC1927, 24.1 83 0.0028 21.6 3.6 45 11-55 68-128 (136)
450 2ki0_A DS119; beta-alpha-beta, 23.6 29 0.001 16.8 0.9 19 5-28 4-22 (36)
451 2uuu_A Alkyldihydroxyacetoneph 23.2 53 0.0018 29.0 3.1 53 14-66 281-339 (584)
452 1eij_A Hypothetical protein MT 23.1 52 0.0018 20.4 2.1 19 12-30 50-68 (80)
453 1yjr_A Copper-transporting ATP 22.4 1.1E+02 0.0039 17.1 7.8 60 1-64 1-64 (75)
454 3ezj_A General secretion pathw 22.4 45 0.0015 25.4 2.2 68 15-82 10-86 (241)
455 3pm9_A Putative oxidoreductase 22.4 70 0.0024 27.3 3.6 52 14-65 194-251 (476)
456 1ik9_C DNA ligase IV; DNA END 22.2 57 0.0019 16.7 1.9 15 16-30 20-34 (37)
457 2e5q_A PHD finger protein 19; 22.0 92 0.0031 18.1 2.9 14 43-56 33-46 (63)
458 2ns6_A Mobilization protein A; 21.3 1.6E+02 0.0055 21.4 4.9 44 10-53 74-125 (185)
459 2fh0_A Hypothetical 16.0 kDa p 20.7 65 0.0022 20.0 2.2 19 12-30 48-66 (81)
460 1x60_A Sporulation-specific N- 20.4 59 0.002 19.5 2.1 25 51-78 16-40 (79)
461 4ar0_A Type IV pilus biogenesi 20.2 40 0.0014 23.0 1.3 62 20-81 40-105 (128)
462 2kcm_A Cold shock domain famil 20.0 48 0.0016 20.1 1.5 11 45-55 12-22 (74)
No 1
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.3e-36 Score=233.73 Aligned_cols=163 Identities=23% Similarity=0.374 Sum_probs=144.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+++|+++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|.+|+..+|+..+.|+.|.+.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 5789999999999999999999999999999999965 4678899999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
..... .......+|||+|||..+++++|.++|+.||.|..+.++.+.
T Consensus 93 ~~~~~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~ 139 (213)
T 4f02_A 93 QRDPS---------------------------------LRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE 139 (213)
T ss_dssp CCCTH---------------------------------HHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET
T ss_pred ccccc---------------------------------ccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC
Confidence 65411 011123689999999999999999999999999999998876
Q ss_pred CC--cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 161 EG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~~--g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.+ |||||+|.+.++|.+|++.|||..|. |+.|.|..+..
T Consensus 140 ~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~----g~~i~V~~a~~ 180 (213)
T 4f02_A 140 NGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRFKS 180 (213)
T ss_dssp TEEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCCceEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEEEEEcCC
Confidence 43 69999999999999999999999998 99999998863
No 2
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=7.9e-35 Score=225.68 Aligned_cols=195 Identities=14% Similarity=0.125 Sum_probs=144.4
Q ss_pred CCCCeEEEcCCC-CCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLP-SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~-~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+||| ..+|+++|+++|++||.|.+|+++.+ .+|||||+|.++++|..||+.|||..|.|++|.|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 468999999999 79999999999999999999999764 379999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCC-CCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCce--eEEEEee
Q 024276 83 GSGRGPSSSDR-RGGYG-GGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDV--CFAEVSR 158 (270)
Q Consensus 83 ~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v--~~~~~~~ 158 (270)
........... .+... ........................+..+|||.|||..+++++|+++|+.||.| ..+.++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 43211100000 00000 00000000000000000001122456789999999999999999999999999 8888887
Q ss_pred CCC--CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 159 DSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 159 ~~~--~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+.. .|+|||+|.+.++|.+|+..|||..+.+......+.|+.
T Consensus 160 ~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~ 203 (205)
T 3tyt_A 160 GKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKL 203 (205)
T ss_dssp CCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEE
T ss_pred CCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEe
Confidence 642 379999999999999999999999999666666666654
No 3
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=3.9e-34 Score=215.87 Aligned_cols=160 Identities=23% Similarity=0.327 Sum_probs=141.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||+++++++|+++|+.||+|..|.++. ++.++|||||+|.++++|..|+..|++..|.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 579999999999999999999999999999999854 56678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
+... .....+|||+|||..+++++|+++|+.||.|..+.++.+..
T Consensus 82 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 126 (168)
T 1b7f_A 82 PGGE-----------------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKL 126 (168)
T ss_dssp CCSS-----------------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCC
Confidence 5421 12347999999999999999999999999999999988763
Q ss_pred C----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 162 ~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
. |+|||+|.+.++|.+|+..|||..+.+ .+..|.|.++
T Consensus 127 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g--~~~~l~V~~A 168 (168)
T 1b7f_A 127 TGRPRGVAFVRYNKREEAQEAISALNNVIPEG--GSQPLSVRLA 168 (168)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT--CSSCCEEEEC
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhcCCEecC--CCeEEEEEeC
Confidence 3 599999999999999999999999971 1378877653
No 4
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.3e-34 Score=215.09 Aligned_cols=159 Identities=21% Similarity=0.370 Sum_probs=142.5
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++|||+|||.++|+++|+++|+.||+|.+|.+..+ +.++|||||+|.+.++|..|+..||+..|.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999653 5678999999999999999998899999999999999987542
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC--
Q 024276 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG-- 162 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~-- 162 (270)
. .......+|||+|||..+++++|.++|+.||.|..+.++.+..+
T Consensus 81 ~---------------------------------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~ 127 (166)
T 3md3_A 81 Q---------------------------------SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGS 127 (166)
T ss_dssp C---------------------------------CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCC
T ss_pred C---------------------------------CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCC
Confidence 1 11234579999999999999999999999999999999887543
Q ss_pred --cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 --g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|+|||+|.+.++|..|+..|||..+. ++.|.|.+++
T Consensus 128 ~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~ 165 (166)
T 3md3_A 128 SRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINWAA 165 (166)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEESC
T ss_pred cceEEEEEeCCHHHHHHHHHHhCCCccC----CcEEEEEecC
Confidence 59999999999999999999999998 9999999875
No 5
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=8.6e-34 Score=213.67 Aligned_cols=157 Identities=23% Similarity=0.347 Sum_probs=139.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||+.+|+++|+++|+.||+|..|.+.. ++.++|||||+|.++++|..|+..||+..|.|++|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 368999999999999999999999999999999965 46678999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
+... .....+|||+|||..+++++|+++|+.||.|..+.+..+..
T Consensus 81 ~~~~-----------------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~ 125 (167)
T 1fxl_A 81 PSSA-----------------------------------SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQV 125 (167)
T ss_dssp CCCG-----------------------------------GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTT
T ss_pred CCcc-----------------------------------cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 5411 12346899999999999999999999999999999988763
Q ss_pred C----cEEEEEecChhhHHHHHHhcCCccccCcccccc--eeeec
Q 024276 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR--ITVKR 200 (270)
Q Consensus 162 ~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~--i~v~~ 200 (270)
+ |+|||+|.+.++|..|++.|||..+. ++. |.|.+
T Consensus 126 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~~~i~v~~ 166 (167)
T 1fxl_A 126 TGVSRGVGFIRFDKRIEAEEAIKGLNGQKPS----GATEPITVKF 166 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCCCT----TCSSCCEEEE
T ss_pred CCCccceEEEEeCCHHHHHHHHHHhcCCccC----CCccceEEEe
Confidence 3 69999999999999999999999998 654 55554
No 6
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=7.3e-34 Score=219.70 Aligned_cols=167 Identities=13% Similarity=0.246 Sum_probs=140.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+++|+++|+++|+.||.|.+|.++. ++.++|||||+|.++++|.+|+. +++..|.|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~l~v~~~ 89 (196)
T 1l3k_A 11 EQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMN-ARPHKVDGRVVEPKRA 89 (196)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-TCSCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHh-cCCCEECCEEeeeecc
Confidence 5689999999999999999999999999999999965 46678999999999999999999 5999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
........ ........+|||+|||..+++++|+++|+.||.|..+.++.+.
T Consensus 90 ~~~~~~~~-----------------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~ 140 (196)
T 1l3k_A 90 VSREDSQR-----------------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR 140 (196)
T ss_dssp CC----------------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT
T ss_pred cCcccccc-----------------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC
Confidence 75422110 1112344799999999999999999999999999999999876
Q ss_pred CC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCC
Q 024276 161 EG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 161 ~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
.+ |||||+|.+.++|.+|+.. +|..+. |+.|.|..+....
T Consensus 141 ~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~----G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 141 GSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVN----GHNCEVRKALSKQ 184 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHC-SCCEET----TEECEEEECC---
T ss_pred CCCCccceEEEEECCHHHHHHHHHh-CCcEEC----CEEEEEEecCChh
Confidence 43 5999999999999999986 788888 9999999986433
No 7
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=5.3e-33 Score=226.83 Aligned_cols=196 Identities=19% Similarity=0.242 Sum_probs=148.8
Q ss_pred CCCCCeEEEcCCCCCccHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..++++|||+|||.++|+++|+ ++|+.||.|..|.+..++.++|||||+|.+.++|.+|+..|||..|.|+.|.|.
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 85 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 85 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4789999999999999999966 899999999999998888999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCC----C-----------------CCCC--CC------CCCC-------------------------
Q 024276 79 LAHGGSGRGPSSSDR----R-----------------GGYG--GG------GAGG------------------------- 104 (270)
Q Consensus 79 ~~~~~~~~~~~~~~~----~-----------------~~~~--~~------~~~~------------------------- 104 (270)
++............. . .... .. ..+.
T Consensus 86 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 165 (282)
T 3pgw_A 86 YAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYMP 165 (282)
T ss_pred EeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCCC
Confidence 997653210000000 0 0000 00 0000
Q ss_pred CCCCCCCCC--CC--------------------CCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC
Q 024276 105 AGGAGAGAG--AG--------------------RFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG 162 (270)
Q Consensus 105 ~~~~~~~~~--~~--------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~ 162 (270)
..+...+.+ .. .......+..+|||+|||..+++++|+++|+.||.|..+.++.+. .
T Consensus 166 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~-~ 244 (282)
T 3pgw_A 166 PPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR-H 244 (282)
T ss_pred CCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC-C
Confidence 000000000 00 001123356889999999999999999999999999999998765 3
Q ss_pred cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 163 TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 163 g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
|||||+|.+.++|..|+..|||..+.. ++.|.|.+++
T Consensus 245 g~afV~f~~~~~A~~A~~~l~g~~~~~---g~~l~v~~ak 281 (282)
T 3pgw_A 245 DIAFVEFDNEVQAGAARDALQGFKITQ---NNAMKISFAK 281 (282)
T ss_pred cEEEEEeCCHHHHHHHHHHcCCcEeCC---CCEEEEEEec
Confidence 699999999999999999999988873 7889988875
No 8
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=8.8e-34 Score=215.27 Aligned_cols=163 Identities=17% Similarity=0.291 Sum_probs=140.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---C--CCCcEEEEEECCHHHHHHHHHhcCCcccC---CceEE
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---P--RPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLR 76 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~--~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~ 76 (270)
++++|||+|||+++|+++|+++|++||+|..|.++.+ + .++|||||+|.++++|.+|+..||+..+. ++++.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 6799999999999999999999999999999999653 2 57899999999999999999999998875 67888
Q ss_pred EEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEE
Q 024276 77 VELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEV 156 (270)
Q Consensus 77 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~ 156 (270)
+.++..... ......+|||+|||..+++++|+++|+.||.|..+.+
T Consensus 82 ~~~~~~~~~----------------------------------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~ 127 (175)
T 3nmr_A 82 MKPADSEKN----------------------------------NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRI 127 (175)
T ss_dssp EEECGGGCC----------------------------------SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEE
T ss_pred Ecccccccc----------------------------------ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEE
Confidence 888765411 1224579999999999999999999999999999999
Q ss_pred eeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 157 SRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 157 ~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+.+..+ |||||+|.+.++|.+|++.|||..+.. ..++.|.|.+++
T Consensus 128 ~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~-g~~~~l~V~~ad 175 (175)
T 3nmr_A 128 LRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME-GCSSPMVVKFAD 175 (175)
T ss_dssp EECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT-TCSSCCEEEECC
T ss_pred EECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC-CCCCCeEEEecC
Confidence 888653 599999999999999999999988762 114788887763
No 9
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=6.3e-33 Score=219.43 Aligned_cols=194 Identities=15% Similarity=0.171 Sum_probs=147.4
Q ss_pred CCCCeEEEcCCCC-CccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||+ ++++++|+++|+.||.|..|.+..+. +|||||+|.++++|.+|+..||+..|.|+.|.|.++..
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~ 109 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKH 109 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecC
Confidence 5789999999999 99999999999999999999997764 79999999999999999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCC
Q 024276 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSE 161 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~ 161 (270)
........................................+..+|||+|||..+++++|+++|+.|| .|..+.++...
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~- 188 (229)
T 2adc_A 110 QNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD- 188 (229)
T ss_dssp CCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSSS-
T ss_pred ccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEECC-
Confidence 5322211111000000000000000000011111122234578999999999999999999999999 99999986533
Q ss_pred CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 162 ~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.|+|||+|.+.++|.+|+..|||..+. .++.|.|.+++.
T Consensus 189 ~g~afV~f~~~~~A~~Ai~~l~g~~~~---~g~~l~v~~a~~ 227 (229)
T 2adc_A 189 RKMALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSKS 227 (229)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSS---SSCBCEEEECSS
T ss_pred CcEEEEEECCHHHHHHHHHHHCCCccC---CCCeEEEEEecC
Confidence 469999999999999999999999886 278888888753
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=2.7e-33 Score=216.91 Aligned_cols=191 Identities=16% Similarity=0.184 Sum_probs=146.1
Q ss_pred CCeEEEcCCCC-CccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 6 SRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 s~~l~V~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+++|||+|||+ .+++++|+++|+.||.|..|.+..+. +|||||+|.++++|.+|+..||+..|.|++|.|.++....
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~~ 80 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQN 80 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCCC
Confidence 78999999999 99999999999999999999997654 7899999999999999999999999999999999998653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCc
Q 024276 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGT 163 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g 163 (270)
......................................+..+|||+|||..+++++|+++|+.|| .|..+.+..+. .|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~-~g 159 (198)
T 1qm9_A 81 VQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD-RK 159 (198)
T ss_dssp CCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT-SS
T ss_pred cCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC-Cc
Confidence 32221111100000000000000000011111122234578999999999999999999999999 99999986643 47
Q ss_pred EEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 164 YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 164 ~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+|||+|.+.++|..|+..|||..+. .++.|.|.+++
T Consensus 160 ~afV~f~~~~~A~~A~~~l~g~~~~---~g~~l~v~~a~ 195 (198)
T 1qm9_A 160 MALIQMGSVEEAVQALIDLHNHDLG---ENHHLRVSFSK 195 (198)
T ss_dssp CEEEECSSHHHHHHHHHHHTSSCCS---SCCSCCEEEEC
T ss_pred EEEEEeCCHHHHHHHHHHhcCCccC---CCCeEEEEeec
Confidence 9999999999999999999999886 27888888775
No 11
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=4.7e-33 Score=218.43 Aligned_cols=173 Identities=18% Similarity=0.316 Sum_probs=144.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||.++|+++|+++|+.||+|..|.++. ++.++|||||+|.+.++|.+|+..||+..|.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 568999999999999999999999999999999964 56789999999999999999999999999999999998766
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
......... ...........+|||+|||..+++++|+++|+.||.|..+.+..+..
T Consensus 107 ~~~~~~~~~------------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 162 (216)
T 2qfj_A 107 NIGQAQPII------------------------DQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPT 162 (216)
T ss_dssp CCGGGHHHH------------------------HHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTT
T ss_pred Cccccchhh------------------------hhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCC
Confidence 441100000 00000113447999999999999999999999999999999998854
Q ss_pred C----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCC
Q 024276 162 G----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 162 ~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
+ |||||+|.+.++|.+|+..|||..|. ++.|.|.++...+
T Consensus 163 ~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~----g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 163 TGKHKGYGFIEYEKAQSSQDAVSSMNLFDLG----GQYLRVGKAVTPP 206 (216)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCBCS----SSBCEEEECSSCS
T ss_pred CCCcCceEEEEecCHHHHHHHHHHccCCEeC----CcEEEEEEecCCC
Confidence 3 59999999999999999999999998 9999999987543
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=7.1e-33 Score=209.74 Aligned_cols=155 Identities=23% Similarity=0.420 Sum_probs=137.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcc----c-------ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
+++++|||+|||+++|+++|+++|+.| | .|.++.+..+ +|||||+|.++++|.+|+ .||+..|.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~---~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT---TTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC---CCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 478999999999999999999999999 6 6777777544 899999999999999999 699999999
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCcee
Q 024276 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~ 152 (270)
++|.|.++..... .....+|||+|||..+++++|.++|+.||.|.
T Consensus 78 ~~i~v~~~~~~~~-----------------------------------~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~ 122 (172)
T 2g4b_A 78 QSLKIRRPHDYQP-----------------------------------LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLK 122 (172)
T ss_dssp EECEEECCSSCCC-----------------------------------CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEE
T ss_pred ceeeecCCcccCC-----------------------------------CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCce
Confidence 9999998764411 11247999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 153 ~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+.+..+... |||||+|.+.++|.+|++.|||..+. |+.|.|.++
T Consensus 123 ~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~A 171 (172)
T 2g4b_A 123 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRA 171 (172)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEET----TEECEEEEC
T ss_pred EEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEEC----CeEEEEEeC
Confidence 9999988643 59999999999999999999999998 999998875
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=3.3e-32 Score=210.71 Aligned_cols=178 Identities=21% Similarity=0.335 Sum_probs=142.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhccc-----------ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-----------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G-----------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
+.+++|||+|||+++|+++|+++|+.|| .|..+.+. .++|||||+|.++++|.+|+ .||+..|.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 5689999999999999999999999995 56666654 44899999999999999999 699999999
Q ss_pred ceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCcee
Q 024276 73 CRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC 152 (270)
Q Consensus 73 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~ 152 (270)
++|.|.++................ ..............+|||+|||..+++++|+++|+.||.|.
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~ 142 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVY---------------VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLK 142 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCC---------------CTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCC---------------CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCcc
Confidence 999999887653221110000000 00001122234568999999999999999999999999999
Q ss_pred EEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024276 153 FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 153 ~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
.+.+..+... |||||+|.+.++|..|++.|||..+. ++.|.|.++...
T Consensus 143 ~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~~ 194 (198)
T 2yh0_A 143 AFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLG----DKKLLVQRASVG 194 (198)
T ss_dssp EEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEET----TEECEEEESCCC
T ss_pred EEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEECCCC
Confidence 9999988633 59999999999999999999999998 999999998643
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=2.4e-33 Score=213.01 Aligned_cols=161 Identities=14% Similarity=0.225 Sum_probs=138.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||.++|+++|+++|..||.|..+.+ ..++.++|||||+|.++++|.+|++ ||+..|.|++|.|.++.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~~~~ 89 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 89 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEECCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEecCC
Confidence 67899999999999999999999999998766322 3457789999999999999999996 99999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE 161 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~ 161 (270)
.... .......+|||+|||..+++++|+++|+.||.|..+ ......
T Consensus 90 ~~~~---------------------------------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~ 135 (175)
T 1fje_B 90 GRDS---------------------------------KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKS 135 (175)
T ss_dssp CSSC---------------------------------STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSC
T ss_pred Cccc---------------------------------cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCC
Confidence 5421 112345899999999999999999999999999877 233344
Q ss_pred CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 162 GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 162 ~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
.|||||+|.+.++|.+|+..|||..+. ++.|.|.++..
T Consensus 136 ~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~i~v~~a~~ 173 (175)
T 1fje_B 136 KGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYYTGE 173 (175)
T ss_dssp CSEEEEECSSHHHHHHHHHHHTEEEET----TEEEEEEECSS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEecCC
Confidence 579999999999999999999999998 99999998853
No 15
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=3.5e-33 Score=210.39 Aligned_cols=158 Identities=18% Similarity=0.365 Sum_probs=139.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+++++|||+|||.++|+++|+++|+.||+|..|.++. ++.++|||||+|.++++|.+|+.. +..++|+.|.|.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccc
Confidence 4689999999999999999999999999999999964 478899999999999999999994 57899999999887
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
.... ......+|||+|||..+++++|.++|+.||.|..+.++.+.
T Consensus 79 ~~~~-----------------------------------~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~ 123 (167)
T 2cjk_A 79 IPRD-----------------------------------EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123 (167)
T ss_dssp CCHH-----------------------------------HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS
T ss_pred cchh-----------------------------------hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC
Confidence 6431 11124689999999999999999999999999999998775
Q ss_pred C----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 161 E----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 ~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
. .|||||+|.+.++|.+|++ ++|..+. |+.|.|.++..
T Consensus 124 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~V~~a~p 165 (167)
T 2cjk_A 124 DTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFK----DRKIEIKRAEP 165 (167)
T ss_dssp SSSTTSEEEEEEESSHHHHHHHHH-CSEECSS----SSCEEEEECCC
T ss_pred CCCccceEEEEEECCHHHHHHHHh-CCCEEeC----CeEEEEeecCC
Confidence 4 3699999999999999998 8999998 99999998853
No 16
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=6.3e-32 Score=217.77 Aligned_cols=156 Identities=25% Similarity=0.348 Sum_probs=140.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||+++|+++|+++|+.||.|..|.+..+ +|||||+|.+.++|..|+..|||..|.|+.|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~---kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~~ 96 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD---RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATHG 96 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecccC
Confidence 45689999999999999999999999999999999654 899999999999999999999999999999999998643
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC-
Q 024276 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
.+|||+|||..+++++|.++|..||.|..+.++.+..+
T Consensus 97 -----------------------------------------~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~ 135 (261)
T 3sde_A 97 -----------------------------------------AALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGR 135 (261)
T ss_dssp -----------------------------------------SEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSC
T ss_pred -----------------------------------------CcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCC
Confidence 68999999999999999999999999999999888543
Q ss_pred --cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 163 --TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 --g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
|||||+|.+.++|..|+..||+..+.....++.|.|..+..
T Consensus 136 ~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~ 178 (261)
T 3sde_A 136 ATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQ 178 (261)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCC
T ss_pred cCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccc
Confidence 69999999999999999999665555444578888888764
No 17
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.98 E-value=3.9e-31 Score=216.01 Aligned_cols=166 Identities=18% Similarity=0.241 Sum_probs=146.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|++|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3578999999999999999999999999999999854 5677899999999999999999889999999999999998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCC-CHHHHHHHhhhcCceeEEEEeeC
Q 024276 81 HGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSA-SWQDLKDHMRKAGDVCFAEVSRD 159 (270)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~g~v~~~~~~~~ 159 (270)
...... .......+|||.|||..+ ++++|.++|+.||.|..+.++.+
T Consensus 173 ~~~~~~--------------------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~ 220 (284)
T 3smz_A 173 DAGQLT--------------------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACG 220 (284)
T ss_dssp CGGGCC--------------------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEEC
T ss_pred CCCCCC--------------------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEEC
Confidence 765211 112345799999999995 99999999999999999999887
Q ss_pred CCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCCC
Q 024276 160 SEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRSP 205 (270)
Q Consensus 160 ~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~~ 205 (270)
..+ |+|||+|.+.++|..|+..|||..+. |+.|.|.++....
T Consensus 221 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a~~~~ 265 (284)
T 3smz_A 221 QDGQLKGFAVLEYETAEMAEEAQQQADGLSLG----GSHLRVSFCAPGP 265 (284)
T ss_dssp SSCCEEEEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCSSS
T ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCCccC----CeEEEEEEecCCC
Confidence 544 69999999999999999999999998 9999999986443
No 18
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=1e-30 Score=213.50 Aligned_cols=151 Identities=23% Similarity=0.280 Sum_probs=139.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|+.|| |..+.+ +.++|||||+|.++++|.+|+..||+..|.|++|.|.++...
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~~~ 95 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQPTD 95 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecCCC
Confidence 3689999999999999999999999999 999988 455899999999999999999999999999999999985432
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC-
Q 024276 84 SGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG- 162 (270)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~- 162 (270)
.+|||+|||..+++++|.++|+.||.|..+.++.+..+
T Consensus 96 -----------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g 134 (284)
T 3smz_A 96 -----------------------------------------ALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 134 (284)
T ss_dssp -----------------------------------------CEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTC
T ss_pred -----------------------------------------CEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCC
Confidence 69999999999999999999999999999999887643
Q ss_pred ---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 163 ---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 163 ---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
|||||+|.+.++|..|+..|+|..+. ++.|.|..+..
T Consensus 135 ~~~g~afV~f~~~~~a~~A~~~l~~~~~~----g~~i~v~~a~~ 174 (284)
T 3smz_A 135 QSKGYGFAEYMKKDSAARAKSDLLGKPLG----PRTLYVHWTDA 174 (284)
T ss_dssp CEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEECCG
T ss_pred ccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 59999999999999999999999998 99999988864
No 19
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=6.4e-31 Score=215.56 Aligned_cols=167 Identities=13% Similarity=0.263 Sum_probs=142.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhccc-ceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||..+++++|.++|..|| .|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|.|++|.|.++.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 195 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 195 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 9999999653 5679999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCC-CCHHHHHHHhhhcCceeEEEEeeCC
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDS 160 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~ 160 (270)
+....... ........+|||.|||.. +++++|.++|+.||.|..+.++.+.
T Consensus 196 ~~~~~~~~----------------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~ 247 (292)
T 2ghp_A 196 PLEKSKRT----------------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQ 247 (292)
T ss_dssp CC-------------------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCC
T ss_pred CCcccccc----------------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecC
Confidence 65221110 112234589999999999 9999999999999999999998865
Q ss_pred C-----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024276 161 E-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 161 ~-----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
. .|||||+|.+.++|..|+ .|||..+. ++.|.|.++...
T Consensus 248 ~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~----g~~i~V~~a~~k 291 (292)
T 2ghp_A 248 KEHSFNNCCAFMVFENKDSAERAL-QMNRSLLG----NREISVSLADKK 291 (292)
T ss_dssp C---CCCEEEEEEESSHHHHHHHG-GGTTEEET----TEEEEEEECCCC
T ss_pred CcCCCCceEEEEEeCCHHHHHHHH-HhcCCEEC----CcEEEEEEecCC
Confidence 4 479999999999999999 99999998 999999998653
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=1.3e-30 Score=213.78 Aligned_cols=153 Identities=18% Similarity=0.255 Sum_probs=135.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+++++|||+|||+++|+++|+++|+.||+|..|.|..+ ..++|||||+|.++++|.+|+. ||+..|+|++|.|.++..
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~~~ 117 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHLTE 117 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEECCC
Confidence 57899999999999999999999999999999999764 3458999999999999999996 999999999999998632
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCC-
Q 024276 83 GSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDS- 160 (270)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~- 160 (270)
.+|||+|||..+++++|.++|..|| .|..+.++.+.
T Consensus 118 ------------------------------------------~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~ 155 (292)
T 2ghp_A 118 ------------------------------------------CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF 155 (292)
T ss_dssp ------------------------------------------CEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC----
T ss_pred ------------------------------------------CEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC
Confidence 5999999999999999999999999 99999998765
Q ss_pred --CCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 161 --EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 161 --~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..|||||+|.+.++|..|+..|+|..+. +..|.|..+..
T Consensus 156 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~~ 196 (292)
T 2ghp_A 156 NTSRRFAYIDVTSKEDARYCVEKLNGLKIE----GYTLVTKVSNP 196 (292)
T ss_dssp ---CCEEEEECSSHHHHHHHHHHHTTCEET----TEECEEEECCC
T ss_pred CCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEEEEECCC
Confidence 3479999999999999999999999998 89999988763
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=2.2e-25 Score=156.81 Aligned_cols=108 Identities=22% Similarity=0.316 Sum_probs=73.2
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
+.+|||+|||+++|+++|+++|++||.|.+|.|+.+ +.++|||||+|.+.++|.+||..||+..|+|++|.|.++....
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~ 84 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 84 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCC
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcc
Confidence 678999999999999999999999999999999654 4568999999999999999999999999999999999987653
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHH
Q 024276 85 GRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQD 140 (270)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~ 140 (270)
...... ........+|||.|||+.+|++.
T Consensus 85 ~~~~~~---------------------------~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 85 EREAEL---------------------------GARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp C-------------------------------------------------------
T ss_pred cccccc---------------------------ccccCCCCceEeCCCCCCccccc
Confidence 222111 11122335799999999999874
No 22
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.91 E-value=7.1e-23 Score=175.23 Aligned_cols=82 Identities=29% Similarity=0.513 Sum_probs=76.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.||+++|.++|++||.|..|.|+. ++.++|||||+|.++++|.+||..|||..|+|+.|.|.++
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEe
Confidence 4668999999999999999999999999999999964 5778999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024276 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
Confidence 87644
No 23
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.89 E-value=5.2e-23 Score=140.41 Aligned_cols=78 Identities=26% Similarity=0.408 Sum_probs=73.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..++|||+|||+++|+++|+++|++||+|..|.+.. ++.++|||||+|.++++|.+|+..|||..|+|++|.|.+++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 467999999999999999999999999999999964 46788999999999999999999999999999999999987
Q ss_pred C
Q 024276 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 24
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.89 E-value=5.8e-23 Score=175.79 Aligned_cols=76 Identities=14% Similarity=0.210 Sum_probs=70.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|.++|..||.|..|.|+.+.. .|||||+|.+.++|..||..|||..|. +..|.|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~----gr~i~V 176 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKID----GRRVLV 176 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 457999999999999999999999999999999987753 369999999999999999999999998 999999
Q ss_pred ecCC
Q 024276 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
.++.
T Consensus 177 ~~a~ 180 (437)
T 3pgw_S 177 DVER 180 (437)
T ss_pred EEeC
Confidence 8886
No 25
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.88 E-value=5.5e-23 Score=144.73 Aligned_cols=106 Identities=26% Similarity=0.363 Sum_probs=95.2
Q ss_pred CCCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 2 ~~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
...++++|||+|||..+|+++|+++|+.||.|..|.+..++.++|||||+|.+.++|..|+..|||..|+|+.|.|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 83 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYN 83 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 34678999999999999999999999999999999998888889999999999999999999999999999999999987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCc
Q 024276 82 GGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD 150 (270)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~ 150 (270)
+.... .+++...++++|+++|++||.
T Consensus 84 ~~~~~-------------------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 84 ANRAF-------------------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHHT-------------------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred CChhh-------------------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 54110 356677889999999999984
No 26
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.88 E-value=9.6e-22 Score=146.31 Aligned_cols=143 Identities=15% Similarity=0.074 Sum_probs=104.2
Q ss_pred EEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024276 36 IELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGA 114 (270)
Q Consensus 36 ~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (270)
++|..+ ..++|||||+|.++++|++|+..+++....+..+.+............. ..
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 60 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS----------------------HH 60 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC----------------------CC
T ss_pred EEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc----------------------cc
Confidence 445433 3678999999999999999998887643333333332211110000000 00
Q ss_pred CCCCCCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCc
Q 024276 115 GRFGISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 115 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
...........+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+.
T Consensus 61 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~-- 138 (158)
T 2kn4_A 61 HHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD-- 138 (158)
T ss_dssp SSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESS--
T ss_pred cccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC--
Confidence 01112234468999999999999999999999999999999988753 369999999999999999999999998
Q ss_pred ccccceeeecCCCC
Q 024276 191 WARGRITVKRYDRS 204 (270)
Q Consensus 191 ~~~~~i~v~~~~~~ 204 (270)
++.|.|..+...
T Consensus 139 --g~~l~v~~a~~~ 150 (158)
T 2kn4_A 139 --GRELRVQMARYG 150 (158)
T ss_dssp --SSEEEEEEECCS
T ss_pred --CeEEEEEECCCC
Confidence 999999998754
No 27
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.87 E-value=1.9e-21 Score=143.37 Aligned_cols=137 Identities=18% Similarity=0.164 Sum_probs=110.7
Q ss_pred CCCCcEEEEEECCHHHHHHHHHhc-CCcccCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 024276 42 PRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGIS 120 (270)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (270)
...+|+++|+|.++++|++|+..| |+..|+| .|.+.++............ .........
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~-------------------~~~~~~~~~ 69 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHH-------------------HHHHMHRDS 69 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSS-------------------CCCCSCSSS
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCcccccccccc-------------------ccccccccC
Confidence 456899999999999999999999 9999999 9999987643111000000 000011223
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+ ..|||||+|.+.++|..|+..|||..+. ++.|.|.+
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 144 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN-PPGFAFVEFEDPRDAADAVRELDGRTLC----GCRVRVEL 144 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS-SCSEEEEEESSHHHHHHHHHHHSSSCSS----SSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC-CCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 345689999999999999999999999999999999887 4579999999999999999999999998 99999998
Q ss_pred CCC
Q 024276 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 145 a~~ 147 (150)
T 2i2y_A 145 SNG 147 (150)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 28
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=6.5e-22 Score=134.68 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC--CcccCCceEEEEec
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||+++|+++|+++|++||+|.+|.|+.+ +|||||+|.+.++|..|+..|+ +..|.|++|.|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 468999999999999999999999999999999999875 8999999999999999999886 47899999999999
Q ss_pred CCCCC
Q 024276 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 90 ~~~~~ 94 (105)
T 1sjq_A 90 NHKEL 94 (105)
T ss_dssp SSSSC
T ss_pred CCCCC
Confidence 87643
No 29
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.87 E-value=1.6e-21 Score=135.90 Aligned_cols=81 Identities=59% Similarity=1.034 Sum_probs=76.9
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||.++|+++|+++|++||.|..|.|..++.+++||||+|.+.++|.+|+..||+..|+|+.|.|.++..
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 35789999999999999999999999999999999988888899999999999999999999999999999999999986
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 99 ~ 99 (109)
T 1x4a_A 99 G 99 (109)
T ss_dssp C
T ss_pred C
Confidence 5
No 30
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.87 E-value=2.1e-22 Score=135.32 Aligned_cols=79 Identities=18% Similarity=0.311 Sum_probs=71.8
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhccc-ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhc-CCcccCCceEEEEec
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELA 80 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v~~~ 80 (270)
|++|||+|||+++|+++|+++|++|| +|.+|.|+. ++.++|||||+|.++++|.+|++.+ ++..|+|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999854 4788999999999999999999877 467899999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
.++.
T Consensus 81 ~~~~ 84 (91)
T 2lxi_A 81 DPKP 84 (91)
T ss_dssp CSCC
T ss_pred CCCC
Confidence 8763
No 31
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.87 E-value=1.1e-21 Score=132.26 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcc--cCCceEEEEec
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN--FDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~--~~g~~l~v~~~ 80 (270)
..++++|||+|||..+|+++|+++|++||.|.+|.+... +|||||+|.+.++|..|+..||+.. |.|++|.|+++
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~---kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S 94 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK---KRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYS 94 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEec
Confidence 368999999999999999999999999999999999754 8999999999999999999998865 78999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
+.+
T Consensus 95 ~~k 97 (100)
T 3r27_A 95 TSQ 97 (100)
T ss_dssp SCS
T ss_pred ccc
Confidence 865
No 32
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.87 E-value=6.4e-22 Score=135.95 Aligned_cols=76 Identities=45% Similarity=0.718 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGS 84 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~ 84 (270)
++|||+|||.++|+++|+++|++||+|..|.+..+ ++|||||+|.++++|.+|+..||+..|+|+.|.|.++....
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 58999999999999999999999999999999776 78999999999999999999999999999999999998763
No 33
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.86 E-value=3.7e-21 Score=135.27 Aligned_cols=83 Identities=24% Similarity=0.447 Sum_probs=77.3
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 1 m~~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
|+..++++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|++|+..|||..|+|+.|.|.
T Consensus 2 ~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~ 81 (116)
T 2fy1_A 2 VEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVE 81 (116)
T ss_dssp CTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 3457899999999999999999999999999999999966 56788999999999999999999999999999999999
Q ss_pred ecCCC
Q 024276 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 82 ~a~~~ 86 (116)
T 2fy1_A 82 QAKKP 86 (116)
T ss_dssp ECCCS
T ss_pred ECCCC
Confidence 99865
No 34
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.86 E-value=1.2e-21 Score=127.16 Aligned_cols=74 Identities=12% Similarity=0.150 Sum_probs=70.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|.+|++.||+..|+|++|.|..+.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 467899999999999999999999999999999976 49999999999999999999999999999999999884
No 35
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=1.4e-21 Score=135.74 Aligned_cols=80 Identities=19% Similarity=0.302 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+++++++|+++|++||+|.+|.|+. ++.++|||||+|.+.++|++|++.|||..|+|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 644
No 36
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.86 E-value=6.1e-21 Score=130.54 Aligned_cols=83 Identities=28% Similarity=0.375 Sum_probs=76.7
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|++|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 84 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLP 84 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 36889999999999999999999999999999999955 567889999999999999999998999999999999999
Q ss_pred cCCCCC
Q 024276 80 AHGGSG 85 (270)
Q Consensus 80 ~~~~~~ 85 (270)
+.....
T Consensus 85 a~~~~~ 90 (99)
T 1whw_A 85 STIKKE 90 (99)
T ss_dssp CCCCST
T ss_pred cCCCcc
Confidence 987633
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=8.2e-21 Score=128.87 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=76.0
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..||+..|+|++|.|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 81 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGH 81 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEE
Confidence 357899999999999999999999999999999999654 67899999999999999999999999999999999999
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 82 a~~~ 85 (95)
T 2dnz_A 82 VTER 85 (95)
T ss_dssp SSCC
T ss_pred cccc
Confidence 9876
No 38
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=2.7e-21 Score=134.99 Aligned_cols=81 Identities=20% Similarity=0.273 Sum_probs=73.9
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC--CcccCCceEEEEec
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||+++|+++|+++|++||.|.+|.|+.+ +|||||+|.+.++|.+|+..|+ +..|.|++|.|.++
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a 104 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 104 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEc
Confidence 468999999999999999999999999999999999875 8999999999999999999887 46899999999999
Q ss_pred CCCCCC
Q 024276 81 HGGSGR 86 (270)
Q Consensus 81 ~~~~~~ 86 (270)
......
T Consensus 105 ~~k~~~ 110 (119)
T 2ad9_A 105 NHKELK 110 (119)
T ss_dssp SSSSCC
T ss_pred cCCCCC
Confidence 876433
No 39
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.86 E-value=3.3e-21 Score=136.92 Aligned_cols=81 Identities=19% Similarity=0.358 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..++++|||+|||+.+++++|+ ++|++||+|.+|.+..++.++|||||+|.+.++|..|+..|||..|.|++|.|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~ 105 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVIT 105 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEE
Confidence 3578999999999999999876 799999999999998888899999999999999999999999999999999999
Q ss_pred ecCCC
Q 024276 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 106 ~a~~~ 110 (127)
T 2a3j_A 106 FSETP 110 (127)
T ss_dssp ECCCC
T ss_pred EccCc
Confidence 99865
No 40
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.85 E-value=9.1e-21 Score=130.57 Aligned_cols=78 Identities=19% Similarity=0.421 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|.+||.|..|.+. ++||||+|.+.++|.+|+..||+..|.|++|.|.++...
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 83 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPP 83 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCC
Confidence 568999999999999999999999999999999987 679999999999999999999999999999999999876
Q ss_pred CCC
Q 024276 84 SGR 86 (270)
Q Consensus 84 ~~~ 86 (270)
...
T Consensus 84 ~~~ 86 (103)
T 2dgu_A 84 DQK 86 (103)
T ss_dssp CCC
T ss_pred ccc
Confidence 443
No 41
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=1.8e-21 Score=132.53 Aligned_cols=78 Identities=18% Similarity=0.163 Sum_probs=71.9
Q ss_pred CCCCCeEEEcCCCC-CccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC--cccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~ 79 (270)
.+++++|||+|||. .+|+++|+++|++||.|.+|.|+.+ ++||||+|.+.++|..|+..||+ ..|.|++|.|.+
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 88 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHL 88 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEE
Confidence 36899999999999 9999999999999999999999765 68999999999999999998886 459999999999
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 89 a~~~ 92 (102)
T 1x4d_A 89 SQKY 92 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 9865
No 42
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=1.2e-20 Score=130.04 Aligned_cols=82 Identities=33% Similarity=0.490 Sum_probs=75.7
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.++|||+|||..+++++|+++|+.||.|..|.|..+ ..+++||||+|.+.++|.+|+..||+..|.|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWAT 91 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECC
Confidence 367899999999999999999999999999999999764 3468999999999999999999999999999999999998
Q ss_pred CCC
Q 024276 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 92 ~~~ 94 (103)
T 2cqi_A 92 TPS 94 (103)
T ss_dssp CTT
T ss_pred CCc
Confidence 763
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=4.3e-21 Score=131.05 Aligned_cols=82 Identities=22% Similarity=0.357 Sum_probs=75.4
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec------CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
+.++++|||+|||.++|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 46889999999999999999999999999999999964 236689999999999999999999999999999999
Q ss_pred EEecCCCC
Q 024276 77 VELAHGGS 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++....
T Consensus 82 V~~a~~~~ 89 (98)
T 2cpf_A 82 VRISERAT 89 (98)
T ss_dssp EECSSCSS
T ss_pred EEEccCCC
Confidence 99998763
No 44
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=7.3e-21 Score=129.68 Aligned_cols=79 Identities=18% Similarity=0.244 Sum_probs=72.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc--CCcccCCceEEEEec
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR--DGYNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l--~~~~~~g~~l~v~~~ 80 (270)
..++++|||+|||..+|+++|+++|++||.|..|.|+.+ +|||||+|.+.++|..|+..| ++..|.|++|.|.++
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a 88 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYS 88 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEc
Confidence 468899999999999999999999999999999998765 899999999999999999976 567899999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 89 ~~~~ 92 (101)
T 2cq1_A 89 NHKE 92 (101)
T ss_dssp SCSS
T ss_pred Cccc
Confidence 8763
No 45
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.85 E-value=5e-21 Score=130.14 Aligned_cols=79 Identities=25% Similarity=0.535 Sum_probs=74.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||..+++++|+++|++||.|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 5799999999999999999999999999999999653 6779999999999999999999999999999999999998
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 81 ~~ 82 (96)
T 2x1f_A 81 NS 82 (96)
T ss_dssp CS
T ss_pred CC
Confidence 76
No 46
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-20 Score=128.69 Aligned_cols=80 Identities=24% Similarity=0.467 Sum_probs=75.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|++||.|..|.|+. ++.++|||||+|.+.++|.+|+. ||+..|+|++|.|.++
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a 86 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRA 86 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEEC
Confidence 6789999999999999999999999999999999965 46789999999999999999999 9999999999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 87 ~~~~ 90 (99)
T 2dgs_A 87 EPRD 90 (99)
T ss_dssp CCCC
T ss_pred CCCc
Confidence 8763
No 47
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.85 E-value=1.3e-20 Score=132.49 Aligned_cols=82 Identities=28% Similarity=0.434 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|..||.|..|.|.. ++.++|||||+|.+.++|.+||..||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 92 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 92 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 5789999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024276 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 93 ~~~~~ 97 (115)
T 2dgo_A 93 TRKPP 97 (115)
T ss_dssp SCCCC
T ss_pred cCCCC
Confidence 87644
No 48
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.85 E-value=5.5e-21 Score=126.39 Aligned_cols=78 Identities=22% Similarity=0.402 Sum_probs=73.0
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+++|||+|||.++++++|+++|+.||+|..+.+.. ++.++|||||+|.++++|.+|+..|||..|+|++|.|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 47999999999999999999999999999999964 467789999999999999999999999999999999999986
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 5
No 49
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.85 E-value=9.3e-21 Score=129.94 Aligned_cols=78 Identities=18% Similarity=0.198 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC--cccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|++||.|..|.|+.+ +|||||+|.+.++|.+|+..|++ ..|.|++|.|.++.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~ 89 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYST 89 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcc
Confidence 57899999999999999999999999999999998764 89999999999999999998865 55999999999998
Q ss_pred CCC
Q 024276 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 90 ~~~ 92 (104)
T 1wex_A 90 SKR 92 (104)
T ss_dssp SSS
T ss_pred Ccc
Confidence 763
No 50
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=8.7e-21 Score=130.71 Aligned_cols=83 Identities=23% Similarity=0.312 Sum_probs=76.5
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec-CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.+++||||+|.+.++|.+|+..||+..|+|++|.|.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 91 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQ 91 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEec
Confidence 35789999999999999999999999999999999965 46678999999999999999999999999999999999998
Q ss_pred CCCC
Q 024276 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
....
T Consensus 92 ~~~~ 95 (103)
T 2d9p_A 92 RKEE 95 (103)
T ss_dssp SCCC
T ss_pred cccc
Confidence 7643
No 51
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=5.9e-21 Score=131.57 Aligned_cols=81 Identities=35% Similarity=0.495 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|..+ +.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVA 90 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEEC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEC
Confidence 57899999999999999999999999999999999653 678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 91 ~~~~ 94 (103)
T 2dnm_A 91 RYGR 94 (103)
T ss_dssp SSCC
T ss_pred CcCC
Confidence 8763
No 52
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=2e-20 Score=128.87 Aligned_cols=82 Identities=27% Similarity=0.465 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.++|||+|||..+|+++|+++|+.||.|..|.|..+ ..+++||||+|.+.++|.+|+..||+..|+|+.|.|.++..
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 92 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 92 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccc
Confidence 57899999999999999999999999999999999764 34789999999999999999999999999999999999987
Q ss_pred CCC
Q 024276 83 GSG 85 (270)
Q Consensus 83 ~~~ 85 (270)
...
T Consensus 93 ~~~ 95 (103)
T 2cq3_A 93 RVM 95 (103)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
No 53
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.85 E-value=5.2e-21 Score=127.10 Aligned_cols=79 Identities=32% Similarity=0.546 Sum_probs=73.3
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||+.+++++|+++|++||+|..|.+.. ++.++|||||+|.++++|.+|+..|||..|+|++|.|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 36889999999999999999999999999999999843 466799999999999999999999999999999999998
Q ss_pred cC
Q 024276 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
++
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 74
No 54
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=8.7e-21 Score=128.87 Aligned_cols=80 Identities=23% Similarity=0.337 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCccHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 4 RFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+.++|||+|||.++++++|+ ++|++||+|..|.|..+...++||||+|.+.++|.+|+..|||..|+|++|.|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 467899999999999999999 9999999999999976644489999999999999999999999999999999999
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 87 a~~~ 90 (96)
T 2dgx_A 87 ATGA 90 (96)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 9765
No 55
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.85 E-value=2.3e-21 Score=132.18 Aligned_cols=83 Identities=29% Similarity=0.500 Sum_probs=76.1
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHH----HHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEE
Q 024276 1 MSGRFSRTIYVGNLPSDIREYEVE----DLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 1 m~~~~s~~l~V~nl~~~~t~~~L~----~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
|+..++++|||+|||.++++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|..|+..|||..|+|++|.
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 455789999999999999999999 9999999999999987777789999999999999999999999999999999
Q ss_pred EEecCCC
Q 024276 77 VELAHGG 83 (270)
Q Consensus 77 v~~~~~~ 83 (270)
|.++...
T Consensus 83 v~~a~~~ 89 (97)
T 1nu4_A 83 IQYAKTD 89 (97)
T ss_dssp EEECSSC
T ss_pred EEEccCC
Confidence 9999875
No 56
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.85 E-value=5.4e-21 Score=131.75 Aligned_cols=81 Identities=33% Similarity=0.512 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|++||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (103)
T 2cq0_A 13 DDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWA 92 (103)
T ss_dssp SSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEC
Confidence 5789999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 93 ~~~~ 96 (103)
T 2cq0_A 93 KPST 96 (103)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 8763
No 57
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.85 E-value=9e-21 Score=127.90 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=75.9
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec-CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI-PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
..+.++|||+|||.++++++|+++|++||+|..|.+.. ++.+++||||+|.+.++|.+|+..||+..|+|+.|.|.++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 84 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDR 84 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 46889999999999999999999999999999999965 56778999999999999999999999999999999999998
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 85 ~~ 86 (92)
T 2dgv_A 85 NA 86 (92)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 58
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=6.2e-21 Score=131.23 Aligned_cols=82 Identities=30% Similarity=0.485 Sum_probs=76.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|++|.|.++
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 89 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 89 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeC
Confidence 6789999999999999999999999999999999965 3678999999999999999999999999999999999999
Q ss_pred CCCCC
Q 024276 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 90 ~~~~~ 94 (102)
T 2cqb_A 90 KPMRI 94 (102)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87643
No 59
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.8e-20 Score=130.31 Aligned_cols=79 Identities=25% Similarity=0.373 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+|+++|+++|+.||+|..|.|.. ++.+++||||+|.+.++|++||..|++ .|.|++|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a 93 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLA 93 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEc
Confidence 5789999999999999999999999999999999965 467899999999999999999999998 899999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 94 ~~~ 96 (116)
T 2cqd_A 94 YLG 96 (116)
T ss_dssp TTT
T ss_pred ccC
Confidence 765
No 60
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=130.79 Aligned_cols=80 Identities=19% Similarity=0.256 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|..||.|..|.|.. ++.+++||||+|.+.++|.+|+..||+..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 92 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDE 92 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcc
Confidence 6789999999999999999999999999999999965 45668999999999999999999999999999999999987
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 93 ~~ 94 (114)
T 2do0_A 93 RA 94 (114)
T ss_dssp CC
T ss_pred cC
Confidence 65
No 61
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.7e-21 Score=130.25 Aligned_cols=81 Identities=35% Similarity=0.551 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||+++++++|+++|+.||+|..|.|.. ++.++|||||+|.++++|.+|+..||+..|+|++|.|.++
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 89 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQA 89 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 6889999999999999999999999999999999965 4668999999999999999999999999999999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 90 ~~~~ 93 (102)
T 1x5s_A 90 GKSS 93 (102)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8763
No 62
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=130.56 Aligned_cols=81 Identities=28% Similarity=0.398 Sum_probs=75.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|++||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 92 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKA 92 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEET
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEC
Confidence 5789999999999999999999999999999999965 5678999999999999999999999999999999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 93 ~~~~ 96 (105)
T 1x5u_A 93 SAHN 96 (105)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 8763
No 63
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=5.4e-21 Score=127.59 Aligned_cols=80 Identities=29% Similarity=0.434 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 5688999999999999999999999999999999965 4677899999999999999999999999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
..+
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 754
No 64
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=8.3e-21 Score=129.11 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEE-EEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDI-ELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~-~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.++++|||+|||..+|+++|+++|+.||.|..| .|.. ++.++|||||+|.++++|.+|+..||+..|+|++|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 578999999999999999999999999999999 8854 467899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024276 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 83 a~~~~ 87 (96)
T 1x5t_A 83 AFKKD 87 (96)
T ss_dssp SCCCC
T ss_pred ecccC
Confidence 98763
No 65
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=128.16 Aligned_cols=78 Identities=21% Similarity=0.414 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||+|..|.+..+ +.+++||||+|.++++|.+|+..||+..|+|++|.|.++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 14 PSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIA 93 (94)
T ss_dssp CCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEec
Confidence 56899999999999999999999999999999999654 677999999999999999999999999999999999987
Q ss_pred C
Q 024276 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 94 k 94 (94)
T 2e5h_A 94 I 94 (94)
T ss_dssp C
T ss_pred C
Confidence 4
No 66
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-21 Score=131.58 Aligned_cols=79 Identities=19% Similarity=0.290 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccc--eEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCc----ccCCce
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR--ILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGCR 74 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~--v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~----~~~g~~ 74 (270)
..-.||||+|||+.+|+++|+++|++||. |.+|.+.. ++.++|||||+|.++++|.+|++.||+. .|+|++
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 45579999999999999999999999995 66888854 4788999999999999999999999996 589999
Q ss_pred EEEEecCC
Q 024276 75 LRVELAHG 82 (270)
Q Consensus 75 l~v~~~~~ 82 (270)
|.|.+++.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999874
No 67
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=128.87 Aligned_cols=80 Identities=23% Similarity=0.438 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||..+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|++|.|.++.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 94 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISN 94 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECC
Confidence 5689999999999999999999999999999999965 45678999999999999999999999999999999999998
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 95 ~~ 96 (100)
T 2do4_A 95 SG 96 (100)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 68
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=2.6e-20 Score=124.99 Aligned_cols=77 Identities=34% Similarity=0.623 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+.++|||+|||.++|+++|+++|++||+|..|.+. ++||||+|.+.++|.+|+..||+..|+|++|.|.++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCC
Confidence 3688999999999999999999999999999999998 78999999999999999999999999999999999987
Q ss_pred CC
Q 024276 83 GS 84 (270)
Q Consensus 83 ~~ 84 (270)
..
T Consensus 80 ~~ 81 (90)
T 2dnq_A 80 KS 81 (90)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 69
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.8e-20 Score=129.14 Aligned_cols=81 Identities=25% Similarity=0.407 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec----CCCCCcEEEEEECCHHHHHHHHHhc-CCcccCCceEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v~ 78 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..| |+..|.|++|.|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~ 92 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLE 92 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEE
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEE
Confidence 5789999999999999999999999999999999954 4677999999999999999999999 9999999999999
Q ss_pred ecCCCC
Q 024276 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 93 ~a~~~~ 98 (107)
T 2cph_A 93 WADSEV 98 (107)
T ss_dssp ECCCCC
T ss_pred eCCCCC
Confidence 998763
No 70
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.84 E-value=1.1e-20 Score=132.80 Aligned_cols=82 Identities=21% Similarity=0.506 Sum_probs=75.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++++++|+++|+.||.|..|.|.. ++.+++||||+|.+.++|.+||..||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 102 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLK 102 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 4679999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024276 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.....
T Consensus 103 ~~~~~ 107 (115)
T 2cpz_A 103 RSKND 107 (115)
T ss_dssp CCSCC
T ss_pred CCCCc
Confidence 87643
No 71
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=9.9e-21 Score=128.48 Aligned_cols=79 Identities=30% Similarity=0.444 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||+|..|.+..+ +.++|||||+|.++++|.+|+..||+..|+|++|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 92 (95)
T 2cqc_A 13 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGP 92 (95)
T ss_dssp CGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEec
Confidence 57899999999999999999999999999999999653 567899999999999999999999999999999999998
Q ss_pred CC
Q 024276 81 HG 82 (270)
Q Consensus 81 ~~ 82 (270)
..
T Consensus 93 ~~ 94 (95)
T 2cqc_A 93 SS 94 (95)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 72
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.2e-20 Score=130.82 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=74.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||+|..|.|..+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 100 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 100 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEee
Confidence 46789999999999999999999999999999999653 677899999999999999999999999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 101 ~~~ 103 (106)
T 1p27_B 101 FVR 103 (106)
T ss_dssp EES
T ss_pred cCC
Confidence 765
No 73
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=125.58 Aligned_cols=80 Identities=25% Similarity=0.486 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCC---C-CCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPP---R-PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~---~-~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
-.+++|||+|||.++|+++|+++|++||.|..|.+..+. . ++|||||+|.+.++|.+|+..|||..|+|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 357899999999999999999999999999999985532 2 789999999999999999999999999999999999
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+.+.
T Consensus 82 a~~~ 85 (88)
T 4a8x_A 82 VLAP 85 (88)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 8765
No 74
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=2.4e-20 Score=128.71 Aligned_cols=79 Identities=24% Similarity=0.400 Sum_probs=73.5
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC----CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
..+.++|||+|||.++|+++|+++|..|| |..|.|+.+ +.++|||||+|.++++|.+|| .||+..|+|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 35789999999999999999999999999 999999654 677999999999999999999 799999999999999
Q ss_pred ecCCC
Q 024276 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 90 ~a~~~ 94 (104)
T 1wi8_A 90 VADQA 94 (104)
T ss_dssp ECCCC
T ss_pred EccCC
Confidence 99876
No 75
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.84 E-value=2.4e-20 Score=129.02 Aligned_cols=82 Identities=24% Similarity=0.304 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCC---ceEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG---CRLRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g---~~l~v~ 78 (270)
.++++|||+|||..+++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|.| ++|.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~ 92 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVK 92 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEE
Confidence 4689999999999999999999999999999999965 46668999999999999999999999999988 999999
Q ss_pred ecCCCCC
Q 024276 79 LAHGGSG 85 (270)
Q Consensus 79 ~~~~~~~ 85 (270)
++.....
T Consensus 93 ~a~~~~~ 99 (105)
T 2dnh_A 93 FADTDKE 99 (105)
T ss_dssp ESCSSCC
T ss_pred ECccCcc
Confidence 9987643
No 76
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=129.65 Aligned_cols=81 Identities=20% Similarity=0.412 Sum_probs=75.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcC------CcccCCce
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRD------GYNFDGCR 74 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~------~~~~~g~~ 74 (270)
.++++|||+|||.++|+++|+++|..||+|..|.|.. ++.++|||||+|.+.++|.+|+..|| +..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~ 92 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQ 92 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEE
Confidence 5789999999999999999999999999999999965 46789999999999999999999999 99999999
Q ss_pred EEEEecCCCC
Q 024276 75 LRVELAHGGS 84 (270)
Q Consensus 75 l~v~~~~~~~ 84 (270)
|.|.++....
T Consensus 93 l~v~~a~~~~ 102 (111)
T 1x4h_A 93 LKVDLAVTRD 102 (111)
T ss_dssp EEEECCCCCC
T ss_pred EEEEECCCCc
Confidence 9999998763
No 77
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=6.1e-20 Score=127.47 Aligned_cols=77 Identities=22% Similarity=0.250 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCC-----ceEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-----CRLRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-----~~l~v~ 78 (270)
...++|||+|||.++|+++|+++|.+||+|..|.|..+ +||||+|.+.++|++||+.||+..|.| ++|.|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 46799999999999999999999999999999999865 899999999999999999999999999 999999
Q ss_pred ecCCCC
Q 024276 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++.+..
T Consensus 89 ~a~~~~ 94 (108)
T 1x4c_A 89 VDGPRS 94 (108)
T ss_dssp ESSCCS
T ss_pred eCCCCC
Confidence 998753
No 78
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=3e-20 Score=126.53 Aligned_cols=77 Identities=22% Similarity=0.429 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC--CceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD--GCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~ 81 (270)
.++++|||+|||.++|+++|+++|++||+|..|.+... ++||||+|.+.++|++|+..||+..|. |++|.|.++.
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~ 91 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAK 91 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECC
Confidence 57899999999999999999999999999999998754 789999999999999999999999999 9999999998
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 92 ~~ 93 (97)
T 1why_A 92 SG 93 (97)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 79
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=129.37 Aligned_cols=82 Identities=22% Similarity=0.454 Sum_probs=75.7
Q ss_pred CCCCCCeEEEcCCCCCccHHHHHHHhhcccceE-EEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCce---
Q 024276 2 SGRFSRTIYVGNLPSDIREYEVEDLFYKYGRIL-DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--- 74 (270)
Q Consensus 2 ~~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~-~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--- 74 (270)
+..++++|||+|||.++++++|+++|++||+|. .|.|.. ++.++|||||+|.+.++|++|+..||+..|.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 347899999999999999999999999999999 999964 4677899999999999999999999999999999
Q ss_pred -EEEEecCCC
Q 024276 75 -LRVELAHGG 83 (270)
Q Consensus 75 -l~v~~~~~~ 83 (270)
|.|.++...
T Consensus 85 ~l~v~~a~~~ 94 (99)
T 2div_A 85 RFKLNYATYS 94 (99)
T ss_dssp ECCEEETTCC
T ss_pred eEEEeecCCC
Confidence 999998765
No 80
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=127.46 Aligned_cols=79 Identities=25% Similarity=0.415 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+.+++++|+++|+.||+|..|.|..+ +.++|||||+|.++++|.+|+..||+..|+|++|.|.++.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcC
Confidence 57899999999999999999999999999999999654 5678999999999999999999999999999999999876
Q ss_pred C
Q 024276 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
.
T Consensus 94 ~ 94 (95)
T 2ywk_A 94 S 94 (95)
T ss_dssp C
T ss_pred C
Confidence 3
No 81
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=4.6e-20 Score=124.32 Aligned_cols=76 Identities=34% Similarity=0.610 Sum_probs=72.1
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..++++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..||+..|.|+.|.|.++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 81 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTS 81 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccC
Confidence 4678999999999999999999999999999999997 55999999999999999999999999999999999987
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 82 ~ 82 (92)
T 2dgt_A 82 R 82 (92)
T ss_dssp C
T ss_pred C
Confidence 6
No 82
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.83 E-value=7.8e-21 Score=133.41 Aligned_cols=74 Identities=62% Similarity=1.012 Sum_probs=65.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccc-----e
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR-----I 196 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~-----i 196 (270)
...++|||+|||..+++++|+++|..||.|..+.++.+ |||||+|.+.++|++|++.|||..|. ++. |
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~~~~~~i 86 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFR----SHEGETAYI 86 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT---SEEEEEESSHHHHHHHHHHHTTCBCC----CTTSCCCBC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC---CEEEEEECCHHHHHHHHHHhCCCEEC----CcEeeeEEE
Confidence 45689999999999999999999999999999999887 79999999999999999999999998 666 5
Q ss_pred eeecCC
Q 024276 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
+|..+.
T Consensus 87 ~v~~~~ 92 (115)
T 3beg_B 87 RVKVDG 92 (115)
T ss_dssp EEEECC
T ss_pred EeccCC
Confidence 666553
No 83
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.83 E-value=1.8e-20 Score=129.93 Aligned_cols=80 Identities=26% Similarity=0.468 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||+|..|.+.. ++.++|||||+|.+.++|..|+..|||..|+|++|.|.++
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 103 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHV 103 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEc
Confidence 5789999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.++
T Consensus 104 ~~k 106 (108)
T 2jrs_A 104 TER 106 (108)
T ss_dssp CSS
T ss_pred ccC
Confidence 765
No 84
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.7e-20 Score=128.64 Aligned_cols=78 Identities=17% Similarity=0.361 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+++|+++|.++|++||+|..|.|..+ +.++|||||+|.++++|..|+. +++..|+|+.|.|.++.
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKD 87 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEch
Confidence 46789999999999999999999999999999999654 6789999999999999999999 99999999999999876
Q ss_pred C
Q 024276 82 G 82 (270)
Q Consensus 82 ~ 82 (270)
.
T Consensus 88 ~ 88 (103)
T 1s79_A 88 D 88 (103)
T ss_dssp H
T ss_pred H
Confidence 4
No 85
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.4e-20 Score=129.97 Aligned_cols=78 Identities=26% Similarity=0.326 Sum_probs=71.5
Q ss_pred CCCCCeEEEcCCCCC-ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC--CcccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l~v~~ 79 (270)
..++++|||+|||.+ +|+++|+++|++||+|.+|.|... +|||||+|.+.++|..|+..|| +..|.|++|.|.+
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~ 98 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM---KSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDL 98 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT---TTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 468999999999998 999999999999999999999754 8999999999999999999885 4679999999999
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 99 a~~~ 102 (112)
T 1x4f_A 99 SEKY 102 (112)
T ss_dssp ECSC
T ss_pred Cccc
Confidence 9865
No 86
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.83 E-value=3.2e-20 Score=128.54 Aligned_cols=82 Identities=16% Similarity=0.292 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCccc---CCceEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNF---DGCRLR 76 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---~g~~l~ 76 (270)
..+.++|||+|||..+++++|+++|++||+|..|.|+. ++.++|||||+|.+.++|.+|+..||+..+ .|++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~ 89 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQ 89 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEE
Confidence 36789999999999999999999999999999999965 467899999999999999999999999888 899999
Q ss_pred EEecCCCC
Q 024276 77 VELAHGGS 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++....
T Consensus 90 v~~a~~~~ 97 (106)
T 2dgp_A 90 VKPADSES 97 (106)
T ss_dssp EEECCCCS
T ss_pred EEECCccc
Confidence 99998763
No 87
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.83 E-value=2e-20 Score=133.88 Aligned_cols=80 Identities=30% Similarity=0.465 Sum_probs=75.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||.++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|++||..||+..|+|++|.|.++
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a 123 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 123 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 5789999999999999999999999999999999965 4678999999999999999999999999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
..+
T Consensus 124 ~~~ 126 (129)
T 2kxn_B 124 ITK 126 (129)
T ss_dssp SSS
T ss_pred cCC
Confidence 865
No 88
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.83 E-value=2.3e-20 Score=130.20 Aligned_cols=80 Identities=23% Similarity=0.386 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|++|.|.++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 103 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 103 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEc
Confidence 5678999999999999999999999999999999964 4677999999999999999999999999999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 104 ~~~ 106 (110)
T 1oo0_B 104 FVK 106 (110)
T ss_dssp EES
T ss_pred ccC
Confidence 865
No 89
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.83 E-value=3.1e-20 Score=137.73 Aligned_cols=82 Identities=33% Similarity=0.472 Sum_probs=75.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||+|..|.|..+ +.+++||||+|.+.++|.+||..||+..|+|++|.|.++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 116 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWD 116 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 47899999999999999999999999999999999653 567899999999999999999999999999999999999
Q ss_pred CCCCC
Q 024276 81 HGGSG 85 (270)
Q Consensus 81 ~~~~~ 85 (270)
.+...
T Consensus 117 ~~~~~ 121 (156)
T 1h2v_Z 117 AGFKE 121 (156)
T ss_dssp SCCCT
T ss_pred CCCCC
Confidence 87643
No 90
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=9.3e-21 Score=129.66 Aligned_cols=80 Identities=24% Similarity=0.341 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCC------CccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCC-c
Q 024276 4 RFSRTIYVGNLPS------DIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-C 73 (270)
Q Consensus 4 ~~s~~l~V~nl~~------~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~ 73 (270)
..+++|||+|||. ++++++|+++|++||+|..|.|+. ++.++|||||+|.++++|.+|+..|||..|.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4578999999999 999999999999999999999954 47789999999999999999999999999999 9
Q ss_pred eEEEEecCCC
Q 024276 74 RLRVELAHGG 83 (270)
Q Consensus 74 ~l~v~~~~~~ 83 (270)
+|.|.++.+.
T Consensus 84 ~l~V~~a~~~ 93 (100)
T 3ns6_A 84 RLFLYTMKDV 93 (100)
T ss_dssp BCEEEESHHH
T ss_pred EEEEEECchh
Confidence 9999998653
No 91
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=5.8e-20 Score=123.31 Aligned_cols=75 Identities=32% Similarity=0.554 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|++||.|..|.+. ++||||+|.+.++|.+|+..||+..|+|+.|.|.++...
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 81 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKG 81 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCC
Confidence 678999999999999999999999999999999997 569999999999999999999999999999999999876
No 92
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.83 E-value=3.5e-21 Score=129.26 Aligned_cols=77 Identities=14% Similarity=0.180 Sum_probs=67.8
Q ss_pred CeEEEcCCCCCccHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+|||+|||.++|+++|+++|+.|| .|.+|.+.. ++.++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 4899999999999999999999999 999999855 56789999999999999999999999999999999999988
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 82 ~~ 83 (90)
T 3p5t_L 82 KL 83 (90)
T ss_dssp --
T ss_pred CC
Confidence 76
No 93
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.83 E-value=2.9e-20 Score=124.56 Aligned_cols=78 Identities=22% Similarity=0.395 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||.++++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+ .||+..|+|+.|.|.++.
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~ 83 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKR 83 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETT
T ss_pred cCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEcc
Confidence 568999999999999999999999999999999954 5678999999999999999999 799999999999999987
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 84 ~~ 85 (89)
T 3ucg_A 84 TN 85 (89)
T ss_dssp TT
T ss_pred CC
Confidence 64
No 94
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.6e-20 Score=131.62 Aligned_cols=78 Identities=23% Similarity=0.546 Sum_probs=72.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|+.|.|+++
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 5679999999999999999999999999999999964 4678999999999999999999999999999999999987
Q ss_pred C
Q 024276 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
+
T Consensus 118 k 118 (118)
T 2khc_A 118 K 118 (118)
T ss_dssp -
T ss_pred C
Confidence 4
No 95
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-19 Score=125.14 Aligned_cols=80 Identities=59% Similarity=0.936 Sum_probs=71.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccC-cccccceeee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN-PWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~-~~~~~~i~v~ 199 (270)
....++|||+|||..+++++|+++|..||.|..+.++.+ +||||+|.+.++|++|++.|||..|.+ ...++.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~---g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD---GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT---TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC---CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 345689999999999999999999999999999999887 799999999999999999999999981 2222999999
Q ss_pred cCCC
Q 024276 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.+..
T Consensus 89 ~a~~ 92 (108)
T 1x4c_A 89 VDGP 92 (108)
T ss_dssp ESSC
T ss_pred eCCC
Confidence 9864
No 96
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=3.1e-20 Score=128.84 Aligned_cols=78 Identities=22% Similarity=0.393 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||+.+|+++|+++|..||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|++|.|.++.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5789999999999999999999999999999999964 46778999999999999999999999999999999999875
No 97
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.5e-20 Score=131.22 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCccHHHHH---HHhhcccceEEEEEecCC------CCCcEEEEEECCHHHHHHHHHhcCCcccCCce
Q 024276 4 RFSRTIYVGNLPSDIREYEVE---DLFYKYGRILDIELKIPP------RPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~---~~F~~~G~v~~~~~~~~~------~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
.+.++|||+|||+++++++|+ ++|++||+|..|.|..+. .++|||||+|.++++|++||..||+..|+|++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~ 92 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRT 92 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEE
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEE
Confidence 367899999999999999999 999999999999996542 45699999999999999999999999999999
Q ss_pred EEEEecCCC
Q 024276 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|.|.++.++
T Consensus 93 l~V~~a~~k 101 (111)
T 2cpi_A 93 LKASLGTTK 101 (111)
T ss_dssp EEEESCCCC
T ss_pred EEEEecccc
Confidence 999999876
No 98
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.82 E-value=6.1e-20 Score=126.43 Aligned_cols=79 Identities=28% Similarity=0.496 Sum_probs=73.1
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||.++++++|+++|+.|| |..|.|+.+ +.++|||||+|.+.++|.+|+ .||+..|+|++|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~ 89 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDI 89 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEE
Confidence 36789999999999999999999999997 999999653 677899999999999999999 7999999999999999
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 90 a~~~ 93 (103)
T 2dng_A 90 AEGR 93 (103)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9876
No 99
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.82 E-value=1.4e-20 Score=123.70 Aligned_cols=72 Identities=28% Similarity=0.469 Sum_probs=66.9
Q ss_pred CCeEEEcCCCCCc------cHHHHHHHhhcccceEEEEEe-cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCc-eEEE
Q 024276 6 SRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RLRV 77 (270)
Q Consensus 6 s~~l~V~nl~~~~------t~~~L~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l~v 77 (270)
+++|||+|||..+ |+++|+++|++||+|..|.+. .++.++|||||+|.++++|.+|+..|||..|+|+ +|.|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999985 4678899999999999999999999999999999 8876
No 100
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.3e-20 Score=122.60 Aligned_cols=75 Identities=28% Similarity=0.477 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc-CCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR-DGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l-~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|++||.|..|.+..+ +|||||+|.+.++|.+|+..| ++..|+|++|.|.+++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 57899999999999999999999999999999999864 799999999999999999988 9999999999999874
No 101
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.2e-19 Score=126.39 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=74.9
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccc-eEEEEEe-c---CCCCCcEEEEEECCHHHHHHHHHhcC--CcccCCceE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELK-I---PPRPPCYCFVEFENARDAEDAIRGRD--GYNFDGCRL 75 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~-v~~~~~~-~---~~~~~g~afV~f~~~~~a~~A~~~l~--~~~~~g~~l 75 (270)
+.++++|||+|||..+|+++|+++|..||. |..|.+. . ++.++|||||+|.+.++|..|+..|| +..|+|+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l 84 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQI 84 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCC
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeE
Confidence 367899999999999999999999999998 9999986 3 35789999999999999999999996 599999999
Q ss_pred EEEecCCCCC
Q 024276 76 RVELAHGGSG 85 (270)
Q Consensus 76 ~v~~~~~~~~ 85 (270)
.|.++.+...
T Consensus 85 ~V~~a~~~~~ 94 (109)
T 2dis_A 85 AVDWAEPEID 94 (109)
T ss_dssp EEEESCSSCS
T ss_pred EEEEcCCCCC
Confidence 9999987643
No 102
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.1e-20 Score=125.86 Aligned_cols=77 Identities=32% Similarity=0.465 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||..+|+++|+++|++||+|..|.+..+ ++||||+|.+.++|.+|+..||+..|+|++|.|.++...
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 13 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 57789999999999999999999999999999999865 899999999999999999999999999999999999876
No 103
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.8e-20 Score=129.21 Aligned_cols=80 Identities=21% Similarity=0.371 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccce----EEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v----~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.++++|||+|||..+|+++|+++|..||.| ..+.+. ++.++|||||+|.+.++|.+|+..||+..|+|++|.|.+
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~ 101 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEF 101 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEE
Confidence 467999999999999999999999999998 555555 788899999999999999999999999999999999999
Q ss_pred cCCCC
Q 024276 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+....
T Consensus 102 a~~~~ 106 (115)
T 2cpx_A 102 GKNKK 106 (115)
T ss_dssp CCCCS
T ss_pred ccCCC
Confidence 98763
No 104
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1e-19 Score=126.65 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=73.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.|..+ ++||||+|.+.++|.+|+..||+..|+|+.|.|.++...
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 99 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 99 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCC
Confidence 46789999999999999999999999999999999876 899999999999999999999999999999999999876
Q ss_pred C
Q 024276 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 100 ~ 100 (109)
T 1x4g_A 100 P 100 (109)
T ss_dssp C
T ss_pred C
Confidence 3
No 105
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.82 E-value=4.6e-20 Score=127.38 Aligned_cols=80 Identities=26% Similarity=0.411 Sum_probs=73.8
Q ss_pred CCCCeEEEcCCCCCc------cHHHHHHHhhcccceEEEEEe-cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCc-eE
Q 024276 4 RFSRTIYVGNLPSDI------REYEVEDLFYKYGRILDIELK-IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC-RL 75 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~------t~~~L~~~F~~~G~v~~~~~~-~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~-~l 75 (270)
..+++|||+|||..+ |+++|+++|++||.|..|.|. .++.++|||||+|.+.++|.+|+..|||..|+|+ +|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l 92 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 92 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEE
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceE
Confidence 457899999999999 889999999999999999985 4678899999999999999999999999999998 99
Q ss_pred EEEecCCC
Q 024276 76 RVELAHGG 83 (270)
Q Consensus 76 ~v~~~~~~ 83 (270)
.|.++...
T Consensus 93 ~V~~a~~~ 100 (105)
T 2nlw_A 93 RVNLFTDF 100 (105)
T ss_dssp EEECSCCC
T ss_pred EEEEcchH
Confidence 99998754
No 106
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.82 E-value=7.3e-20 Score=124.42 Aligned_cols=75 Identities=25% Similarity=0.550 Sum_probs=71.3
Q ss_pred CCCCeEEEcCCCC-CccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. ++++++|+++|+.||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.++..
T Consensus 20 ~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 20 HMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp CTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCC
Confidence 5789999999998 99999999999999999999984 79999999999999999999999999999999999875
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 95 ~ 95 (97)
T 2xnq_A 95 N 95 (97)
T ss_dssp C
T ss_pred C
Confidence 4
No 107
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=126.69 Aligned_cols=78 Identities=28% Similarity=0.359 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEE--------EEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.+.++|||+|||.++++++|+++|+.||.|.. |.+.. ++.++|||||+|.+.++|.+|++.|||..|+|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g 90 (99)
T 2la6_A 11 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 90 (99)
T ss_dssp CCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 57899999999999999999999999999999 88854 46778999999999999999999999999999
Q ss_pred ceEEEEecC
Q 024276 73 CRLRVELAH 81 (270)
Q Consensus 73 ~~l~v~~~~ 81 (270)
+.|.|.+++
T Consensus 91 ~~l~V~~A~ 99 (99)
T 2la6_A 91 NPIKVSFAT 99 (99)
T ss_dssp SBCEEEECC
T ss_pred cEEEEEecC
Confidence 999999874
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=3.2e-20 Score=129.03 Aligned_cols=80 Identities=28% Similarity=0.494 Sum_probs=74.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.+.++|||+|||.++|+++|+++|++||+|..|.+..+ +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++..
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 57899999999999999999999999999999999654 45789999999999999999999999999999999999876
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
+
T Consensus 107 ~ 107 (109)
T 2err_A 107 R 107 (109)
T ss_dssp S
T ss_pred C
Confidence 5
No 109
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.6e-20 Score=129.26 Aligned_cols=81 Identities=26% Similarity=0.421 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceE--------EEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--------DIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~--------~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.++++|||+|||..+|+++|+++|+.||.|. .|.|.. ++.++|||||+|.+.++|.+||..||+..|.|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQG 92 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccCC
Confidence 5789999999999999999999999999998 688854 46789999999999999999999999999999
Q ss_pred ceEEEEecCCCC
Q 024276 73 CRLRVELAHGGS 84 (270)
Q Consensus 73 ~~l~v~~~~~~~ 84 (270)
+.|.|.++....
T Consensus 93 ~~l~V~~a~~~~ 104 (113)
T 2cpe_A 93 SKLKVSLARKKP 104 (113)
T ss_dssp EECEEECSSCCC
T ss_pred CEEEEEECCCCC
Confidence 999999998763
No 110
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.82 E-value=6.5e-20 Score=122.28 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=70.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+++++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+. +++..|+|+.|.|.++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 6789999999999999999999999999999999964 46778999999999999999997 6888999999999875
No 111
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.82 E-value=4.1e-20 Score=132.15 Aligned_cols=81 Identities=23% Similarity=0.422 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 99 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWC 99 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEe
Confidence 4678999999999999999999999999999999954 5677999999999999999999999999999999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 100 ~~~~ 103 (126)
T 3ex7_B 100 FVRG 103 (126)
T ss_dssp EESS
T ss_pred cCCC
Confidence 8663
No 112
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=6.6e-20 Score=126.54 Aligned_cols=82 Identities=18% Similarity=0.304 Sum_probs=75.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhc-ccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcc-cCCceEEEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYK-YGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYN-FDGCRLRVE 78 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~-~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~-~~g~~l~v~ 78 (270)
..++++|||+|||.++|+++|+++|.. ||.|..|.|.. ++.++|||||+|.+.++|.+|+..||+.. |+|++|.|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~ 85 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLS 85 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEE
Confidence 367899999999999999999999999 99999999965 56778999999999999999999999999 999999999
Q ss_pred ecCCCC
Q 024276 79 LAHGGS 84 (270)
Q Consensus 79 ~~~~~~ 84 (270)
++....
T Consensus 86 ~a~~~~ 91 (104)
T 2dhg_A 86 VAIPKA 91 (104)
T ss_dssp BCCCCC
T ss_pred EccCCC
Confidence 997653
No 113
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.82 E-value=3e-20 Score=128.68 Aligned_cols=79 Identities=16% Similarity=0.119 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
...++|||+|||+++++++|+++|++|| +|..+.+.. ..++|||||+|.+.++|++||..|||..|+|+.|.|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 899998853 35789999999999999999999999999999999999875
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 4
No 114
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=127.00 Aligned_cols=79 Identities=13% Similarity=0.221 Sum_probs=72.3
Q ss_pred CCCCCCeEEE--cCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc-----CCce
Q 024276 2 SGRFSRTIYV--GNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF-----DGCR 74 (270)
Q Consensus 2 ~~~~s~~l~V--~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~-----~g~~ 74 (270)
+..++++||| +||+..+++++|+++|++||+|..|.|..+ +|||||+|.+.++|++|+..|||..| .|.+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~---rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN---KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT---CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 4578999999 779999999999999999999999987643 89999999999999999999999988 6899
Q ss_pred EEEEecCCC
Q 024276 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999999865
No 115
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=125.71 Aligned_cols=79 Identities=24% Similarity=0.360 Sum_probs=71.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|.+||.|. +....++.++|||||+|.++++|++|+..||+..|.|+.|.|.++...
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (101)
T 2fc9_A 13 GESKTLVLSNLSYSATEETLQEVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPR 91 (101)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCC
Confidence 5789999999999999999999999999883 222346778999999999999999999999999999999999999876
No 116
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.82 E-value=1.3e-19 Score=131.79 Aligned_cols=80 Identities=31% Similarity=0.589 Sum_probs=74.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 119 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALA 119 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 5679999999999999999999999999999999964 3567899999999999999999999999999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 120 ~~~ 122 (139)
T 1u6f_A 120 ASG 122 (139)
T ss_dssp SCC
T ss_pred CCC
Confidence 876
No 117
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.82 E-value=1.2e-19 Score=126.05 Aligned_cols=79 Identities=13% Similarity=0.267 Sum_probs=71.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+..+ +..|+|+.|.|.++
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a 101 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVA 101 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEc
Confidence 5789999999999999999999999999999999965 4778999999999999999999965 59999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 102 ~~~ 104 (109)
T 2rs2_A 102 FPR 104 (109)
T ss_dssp CCC
T ss_pred cCC
Confidence 866
No 118
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.4e-20 Score=128.20 Aligned_cols=77 Identities=26% Similarity=0.307 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
+.+++|||+|||..+|+++|+++|++||.|..|.|.. .++||||+|.+.++|..|+..|||..|+|++|.|.++...
T Consensus 8 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 8 RSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp EEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4578999999999999999999999999999998865 4889999999999999999999999999999999999764
No 119
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=122.79 Aligned_cols=75 Identities=29% Similarity=0.421 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcc--cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKY--GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~--G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|++| |.|..|.+. ++||||+|.+.++|.+|+..||+..|+|+.|.|.++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAK 87 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECC
Confidence 578999999999999999999999999 999999876 7899999999999999999999999999999999998
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 88 ~~ 89 (99)
T 2cpd_A 88 PV 89 (99)
T ss_dssp CC
T ss_pred CC
Confidence 76
No 120
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.81 E-value=7e-20 Score=126.93 Aligned_cols=75 Identities=27% Similarity=0.472 Sum_probs=71.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..|+|+.|.|.++...
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 103 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLP 103 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCC
Confidence 578999999999999999999999999999999998 799999999999999999999999999999999998865
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=5.5e-20 Score=127.14 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=74.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+.++|||+|||+.+++++|+++|++||+|..|.|+. ++.++|||||+|.++++|.+||.. |+..|+|+.|.|.+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~ 91 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKP 91 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEE
Confidence 36889999999999999999999999999999999965 467789999999999999999997 99999999999999
Q ss_pred cCCCC
Q 024276 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
+.+..
T Consensus 92 a~~~~ 96 (105)
T 2dh8_A 92 CTPRG 96 (105)
T ss_dssp SCCSS
T ss_pred ccCCC
Confidence 88663
No 122
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6.2e-20 Score=124.68 Aligned_cols=75 Identities=25% Similarity=0.514 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCC-CccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPS-DIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~-~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
.++++|||+|||. .+++++|+++|++||.|..|.+. +|||||+|.+.++|..|+..||+..|.|++|.|.++..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 82 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSS 82 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCc
Confidence 6899999999998 99999999999999999999996 78999999999999999999999999999999999986
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 83 ~ 83 (96)
T 2kvi_A 83 N 83 (96)
T ss_dssp C
T ss_pred C
Confidence 5
No 123
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.81 E-value=7e-20 Score=135.17 Aligned_cols=79 Identities=13% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
+.++|||+|||.++|+++|+++|+.|| .|..|.|+. ++.++|||||+|.+.++|.+||..|||..|+|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999964 577899999999999999999999999999999999999
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8653
No 124
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.81 E-value=4.9e-20 Score=125.25 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=73.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..||+..|+|++|.|.++.+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 568999999999999999999999999999877 567778999999999999999999999999999999999999765
No 125
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=3.5e-20 Score=127.90 Aligned_cols=80 Identities=31% Similarity=0.594 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 3578999999999999999999999999999999964 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 86 ~~~ 88 (104)
T 1p1t_A 86 ASE 88 (104)
T ss_dssp TCT
T ss_pred CCc
Confidence 865
No 126
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=7.6e-20 Score=124.49 Aligned_cols=78 Identities=26% Similarity=0.461 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..+++|||+|||.++|+++|+++|..||.|. +.++. +.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++.+.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW-QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE-ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc-CCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 3589999999999999999999999999996 55543 467899999999999999999999999999999999999865
No 127
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.81 E-value=2e-19 Score=128.15 Aligned_cols=81 Identities=21% Similarity=0.357 Sum_probs=75.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|+.|.|.++.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 112 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 112 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeC
Confidence 5678999999999999999999999999999999965 46789999999999999999999999999999999999998
Q ss_pred CCC
Q 024276 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 113 ~~~ 115 (124)
T 2kt5_A 113 SQI 115 (124)
T ss_dssp CTT
T ss_pred CCC
Confidence 763
No 128
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-20 Score=125.12 Aligned_cols=79 Identities=16% Similarity=0.286 Sum_probs=72.2
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++++|||+|||+++++++|+++|+.||+|..|.+.. ++.++|||||+|.++++|.+|+..|||..|.|+.|+|.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 36789999999999999999999999999999999965 467899999999999999999999999999999998765
Q ss_pred cC
Q 024276 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 129
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=9.5e-20 Score=123.04 Aligned_cols=77 Identities=21% Similarity=0.317 Sum_probs=70.4
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccc-eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC-cccCCceEEEEec
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR-ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG-YNFDGCRLRVELA 80 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~-v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~g~~l~v~~~ 80 (270)
..+.++|||+|||.++|+++|+++|++||. |..+.+. +++||||+|.+.++|.+|+..||+ ..|+|++|.|.++
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a 80 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYS 80 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEc
Confidence 467899999999999999999999999999 6666664 379999999999999999999999 9999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 81 ~~~ 83 (93)
T 2cqh_A 81 VSK 83 (93)
T ss_dssp CCC
T ss_pred cCc
Confidence 876
No 130
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.81 E-value=6e-20 Score=126.00 Aligned_cols=76 Identities=26% Similarity=0.459 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+++|||+|||.++++++|+++|+.||.|..|.+.. ++|||||+|.+.++|.+|+..|||..|+|+.|.|.++++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP---EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3578999999999999999999999999999999974 489999999999999999999999999999999998864
No 131
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.7e-19 Score=117.15 Aligned_cols=75 Identities=25% Similarity=0.359 Sum_probs=67.8
Q ss_pred CCCCe-EEEcCCCCCccHHH----HHHHhhcc-cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEE
Q 024276 4 RFSRT-IYVGNLPSDIREYE----VEDLFYKY-GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~s~~-l~V~nl~~~~t~~~----L~~~F~~~-G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.|+.| |||+|||..+++++ |+++|++| |+|.+| + .|+|||+|.+.++|..|++.|||..|.|++|+|
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----t---gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v 78 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----T---GCSAILRFINQDSAERAQKRMENEDVFGNRIIV 78 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----C---TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----e---cCEEEEEECCHHHHHHHHHHhcCCccCCceEEE
Confidence 56777 99999999999988 56899999 599998 3 399999999999999999999999999999999
Q ss_pred EecCCCCC
Q 024276 78 ELAHGGSG 85 (270)
Q Consensus 78 ~~~~~~~~ 85 (270)
.+++....
T Consensus 79 ~~A~~~sd 86 (96)
T 2diu_A 79 SFTPKNRE 86 (96)
T ss_dssp ESSCCSCC
T ss_pred EecCCCcc
Confidence 99987643
No 132
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.4e-20 Score=128.40 Aligned_cols=78 Identities=26% Similarity=0.420 Sum_probs=72.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||.++++++|+++|+.||.|..|.|+. ++.++|||||+|.+.++|.+|| .||+..|+|+.|.|.++.
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 102 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQ 102 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecC
Confidence 468999999999999999999999999999999964 3678999999999999999999 799999999999999987
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 103 ~~ 104 (114)
T 2cq4_A 103 AE 104 (114)
T ss_dssp HH
T ss_pred CC
Confidence 54
No 133
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.81 E-value=5.2e-20 Score=119.18 Aligned_cols=72 Identities=22% Similarity=0.330 Sum_probs=67.3
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+|||+|||+++++++|+++|++||+|..|.+.. ++.++|||||+|.++++|++|+. ||+..|+|++|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 599999999999999999999999999999854 46789999999999999999999 9999999999999875
No 134
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.80 E-value=5.2e-20 Score=126.00 Aligned_cols=78 Identities=26% Similarity=0.447 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec----CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI----PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~----~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
...++|||+|||.++++++|+++|+.|| |..|.|.. ++.++|||||+|.+.++|.+|+ .|||..|+|+.|.|.+
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~ 94 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDV 94 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEe
Confidence 5689999999999999999999999999 99999954 5678999999999999999999 7999999999999999
Q ss_pred cCCC
Q 024276 80 AHGG 83 (270)
Q Consensus 80 ~~~~ 83 (270)
+...
T Consensus 95 a~~~ 98 (100)
T 2j76_E 95 ADQA 98 (100)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 8765
No 135
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4e-20 Score=126.21 Aligned_cols=80 Identities=23% Similarity=0.267 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEe---cCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELK---IPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~---~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
...++|||+|||..+++++|+++|..||.|..+.++ .++.++|||||+|.++++|++|+..||+..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a 92 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 92 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEc
Confidence 456899999999999999999999999999766553 35677899999999999999999999999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 93 ~~~ 95 (98)
T 2cqp_A 93 SGP 95 (98)
T ss_dssp SCS
T ss_pred CCC
Confidence 754
No 136
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=3.5e-20 Score=125.75 Aligned_cols=78 Identities=21% Similarity=0.230 Sum_probs=70.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++|+++|+++|.+||.|..+.++. ++.++|||||+|.++++|.+|+..||+..|+|++|.|.++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a 92 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGP 92 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEec
Confidence 3568999999999999999999999999998776643 5677899999999999999999999999999999999987
Q ss_pred C
Q 024276 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 93 ~ 93 (95)
T 2ek1_A 93 S 93 (95)
T ss_dssp C
T ss_pred c
Confidence 5
No 137
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=124.46 Aligned_cols=80 Identities=21% Similarity=0.297 Sum_probs=71.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||.++|+++|+++|+.|+.|.-+....++.++|||||+|.++++|.+||..||+..|+|+.|.|.++.+.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 92 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 92 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCC
Confidence 57899999999999999999999999876554443456778899999999999999999999999999999999999876
No 138
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.80 E-value=7.7e-20 Score=133.58 Aligned_cols=81 Identities=26% Similarity=0.412 Sum_probs=74.7
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEE--------EEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCce
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~--------~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
..++++|||+|||+.+|+++|+++|+.||.|.. +.+..++.++|||||+|.+.++|.+|+..|||..|+|++
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 357899999999999999999999999998865 555678889999999999999999999999999999999
Q ss_pred EEEEecCCC
Q 024276 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|.|.++...
T Consensus 122 l~V~~a~~~ 130 (143)
T 3egn_A 122 MVVQFARSA 130 (143)
T ss_dssp CEEEECCCS
T ss_pred EEEEECCCC
Confidence 999999865
No 139
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.80 E-value=1.9e-19 Score=125.43 Aligned_cols=74 Identities=30% Similarity=0.625 Sum_probs=70.0
Q ss_pred CCCeEEEcCCCCC-ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 5 FSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~s~~l~V~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++++|||+|||.. +++++|+++|++||+|..|.+ +++||||+|.+.++|.+|+..||+..|+|+.|.|.++...
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4589999999999 999999999999999999998 3899999999999999999999999999999999999754
No 140
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=9.9e-20 Score=131.33 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=74.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|++|.|.++
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a 124 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 124 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4678999999999999999999999999999999954 4678999999999999999999999999999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 125 ~~~ 127 (135)
T 2lea_A 125 RYG 127 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 865
No 141
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.3e-19 Score=121.69 Aligned_cols=79 Identities=18% Similarity=0.315 Sum_probs=72.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|..||+|..|.|+. ++.++|||||+|.+.++|.+||. ++..|+|+.|.|.++
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a 90 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLP 90 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECC
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEec
Confidence 5789999999999999999999999999999999965 36778999999999999999999 477999999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 91 ~~~~ 94 (103)
T 2cqg_A 91 NSKQ 94 (103)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 8763
No 142
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=130.10 Aligned_cols=80 Identities=16% Similarity=0.257 Sum_probs=73.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEE--EEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCc----ccCCc
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGY----NFDGC 73 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~--~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~----~~~g~ 73 (270)
..++++|||+|||+++|+++|+++|+.||.|.. |.|+. ++.++|||||+|.+. +|.+|+..||+. .|+|+
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr 98 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGK 98 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCE
Confidence 357899999999999999999999999999966 88854 578899999999999 999999999999 99999
Q ss_pred eEEEEecCCC
Q 024276 74 RLRVELAHGG 83 (270)
Q Consensus 74 ~l~v~~~~~~ 83 (270)
.|.|.++.+.
T Consensus 99 ~l~V~~a~~~ 108 (131)
T 2m2b_A 99 TINVEFAKGS 108 (131)
T ss_dssp CCCCEECCCS
T ss_pred EEEEEECCCC
Confidence 9999999875
No 143
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=6.5e-20 Score=119.36 Aligned_cols=73 Identities=14% Similarity=0.316 Sum_probs=68.4
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
++|||+|||.++++++|+++|++||+|..|.+.. ++.++|||||+|.++++|.+|+..++ ..|+|++|.|.++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 5899999999999999999999999999999965 46789999999999999999999888 9999999999986
No 144
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=120.09 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=72.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||.++|+++|+++|..| .|..|.|+. ++.++|||||+|.+.++|.+|+. ||+..|+|+.|.|.++.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~ 85 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREK 85 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEES
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECC
Confidence 568999999999999999999999999 999999965 46678999999999999999999 99999999999999998
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 86 ~~ 87 (91)
T 2dgw_A 86 SG 87 (91)
T ss_dssp SC
T ss_pred cC
Confidence 66
No 145
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.80 E-value=1.9e-19 Score=128.22 Aligned_cols=78 Identities=24% Similarity=0.414 Sum_probs=72.7
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||.++|+++|+++|++||.|..|.+.. ++.++|||||+|.+.++|.+|+ .||+..|+|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 468999999999999999999999999999999954 5788999999999999999999 699999999999999988
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 114 ~~ 115 (124)
T 2jwn_A 114 TN 115 (124)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 146
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.80 E-value=3.9e-19 Score=132.11 Aligned_cols=80 Identities=34% Similarity=0.508 Sum_probs=75.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|..|+..|||..|+|++|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 3578999999999999999999999999999999965 5788999999999999999999999999999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 148 ~~~ 150 (158)
T 2kn4_A 148 RYG 150 (158)
T ss_dssp CCS
T ss_pred CCC
Confidence 876
No 147
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=3.5e-19 Score=125.35 Aligned_cols=79 Identities=18% Similarity=0.341 Sum_probs=73.2
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC---CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP---PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||.++|+++|+++|..||.|..|.|+.+ +.++|||||+|.+.++|.+||.. ++..|+|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 4689999999999999999999999999999999653 67899999999999999999996 9999999999999998
Q ss_pred CCC
Q 024276 82 GGS 84 (270)
Q Consensus 82 ~~~ 84 (270)
...
T Consensus 105 ~~~ 107 (116)
T 1x4b_A 105 ARE 107 (116)
T ss_dssp SCC
T ss_pred CCc
Confidence 763
No 148
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.8e-19 Score=122.03 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEE-EEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD-IELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~-~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++|+++|+++|..||.|.. |.|.. ++.++|||||+|.++++|.+||.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~ 91 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKS 91 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEEC
Confidence 56899999999999999999999999999987 77754 577899999999999999999996 999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 92 ~~~ 94 (104)
T 1wg5_A 92 SRA 94 (104)
T ss_dssp CTT
T ss_pred CHH
Confidence 654
No 149
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.79 E-value=3.3e-19 Score=129.80 Aligned_cols=77 Identities=32% Similarity=0.556 Sum_probs=71.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+.+|+++|+++|+.||+|..|.+.. ++.++|||||+|.++++|.+|+..||+..|+|++|.|.++
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEEC-
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEeC
Confidence 5789999999999999999999999999999999954 4678999999999999999999999999999999999875
No 150
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=6.5e-19 Score=119.14 Aligned_cols=77 Identities=17% Similarity=0.373 Sum_probs=67.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
...++|||+|||.++|+++|+++|..||.|..| +......+ ||||+|.+.++|.+|+. ||+..|+|+.|.|.++...
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v-~~~~~~g~-~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV-VMDKDKGV-FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE-EECSSSCC-EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE-EEcCCCCc-EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 567899999999999999999999999999998 32211122 99999999999999999 9999999999999987655
No 151
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.79 E-value=2.2e-19 Score=134.34 Aligned_cols=81 Identities=22% Similarity=0.383 Sum_probs=74.4
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|.+||+|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|++|.|.++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEe
Confidence 4678899999999999999999999999999999964 5677899999999999999999999999999999999999
Q ss_pred CCCC
Q 024276 81 HGGS 84 (270)
Q Consensus 81 ~~~~ 84 (270)
....
T Consensus 150 ~~~~ 153 (165)
T 1rk8_A 150 FVKG 153 (165)
T ss_dssp EECC
T ss_pred cCCC
Confidence 8663
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.79 E-value=3.9e-19 Score=124.70 Aligned_cols=76 Identities=21% Similarity=0.245 Sum_probs=66.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCce-----EEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR-----LRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~-----l~v~ 78 (270)
+..++|||+|||.++|+++|+++|.+||+|..|.|+.+ |||||+|.+.++|++||+.||+..|+|+. |.|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 45789999999999999999999999999999999765 89999999999999999999999999998 7777
Q ss_pred ecCCC
Q 024276 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
.+...
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 66543
No 153
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.79 E-value=5.3e-20 Score=123.54 Aligned_cols=76 Identities=32% Similarity=0.576 Sum_probs=69.4
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
++|||+|||.++++++|+++|++||+|..|.+.. ++.++|||||+|.+.+ |..|+..|||..|+|++|.|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 5899999999999999999999999999999965 3678999999999999 99999999999999999999999865
No 154
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=118.47 Aligned_cols=76 Identities=25% Similarity=0.478 Sum_probs=70.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|| ++|+++|+++|++||+|..|.|. .++|||||+|.+.++|.+|+..||+..|+|++|.|.++...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~ 87 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 87 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCC
Confidence 47899999996 89999999999999999999985 45899999999999999999999999999999999999876
Q ss_pred C
Q 024276 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 88 ~ 88 (97)
T 1x5p_A 88 P 88 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 155
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.79 E-value=7.5e-20 Score=125.52 Aligned_cols=79 Identities=20% Similarity=0.296 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEE--ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIEL--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||.++|+++|+++|+.||.|..+.+ ..++.++|||||+|.+.++|.+||+ ||+..|.|+.|.|.++.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~ 93 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPK 93 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcC
Confidence 47889999999999999999999999999877222 2357789999999999999999999 99999999999999998
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 94 ~~ 95 (101)
T 1fj7_A 94 GR 95 (101)
T ss_dssp CC
T ss_pred CC
Confidence 65
No 156
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.79 E-value=4e-19 Score=130.83 Aligned_cols=78 Identities=42% Similarity=0.733 Sum_probs=73.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.+.++|||+|||+.+|+++|+++|+.||.|..|.+..+ ++|||||+|.+.++|..|+..|||..|+|++|.|.++.+.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 46799999999999999999999999999999999765 5899999999999999999999999999999999998765
No 157
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.4e-19 Score=124.46 Aligned_cols=80 Identities=18% Similarity=0.308 Sum_probs=73.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCccc--------CCc
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNF--------DGC 73 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~--------~g~ 73 (270)
.+.++|||+|||.++|+++|+++|..||.|..|.|.. ++.++|||||+|.+.++|.+|+..|||..| .++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~ 102 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 102 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCC
Confidence 4679999999999999999999999999999999965 466789999999999999999999999999 578
Q ss_pred eEEEEecCCC
Q 024276 74 RLRVELAHGG 83 (270)
Q Consensus 74 ~l~v~~~~~~ 83 (270)
+|.|.++.+.
T Consensus 103 ~l~v~~a~p~ 112 (114)
T 1x5o_A 103 PLLCKFSGPS 112 (114)
T ss_dssp CBEEEECCCS
T ss_pred ceeEEccCCC
Confidence 8999998754
No 158
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.79 E-value=2.6e-19 Score=119.53 Aligned_cols=77 Identities=32% Similarity=0.372 Sum_probs=71.6
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
++.+++|||+|||+++++++|+++|++| .|..+.+. .++|||||+|.++++|.+|+..|||..|+|++|.|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3678999999999999999999999999 99999885 5589999999999999999999999999999999999865
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 4
No 159
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=2e-19 Score=126.76 Aligned_cols=79 Identities=16% Similarity=0.198 Sum_probs=72.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccc---eEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~---v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.+.++|||+|||.++|+++|+++|+.||. |..|.|.. ++.++|||||+|.+.++|++||. ||+..|+|+.|.|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 93 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVF 93 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEE
Confidence 46789999999999999999999999998 88888864 36778999999999999999999 99999999999999
Q ss_pred ecCCC
Q 024276 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
++...
T Consensus 94 ~a~~~ 98 (118)
T 2db1_A 94 KSHRT 98 (118)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98643
No 160
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=9.4e-19 Score=118.86 Aligned_cols=79 Identities=16% Similarity=0.342 Sum_probs=70.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEE-EecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~-~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
..+++|||+|||+.+|+++|+++|..||.|..|. +..+. ..+.|||+|.+.++|..|+..|||..|+|++|.|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 3578999999999999999999999999999995 65442 245599999999999999999999999999999999987
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 6
No 161
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.4e-19 Score=125.67 Aligned_cols=79 Identities=15% Similarity=0.130 Sum_probs=72.5
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccce-EEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI-LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v-~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||.++|+++|+++|+.||.| ..|.|+. ++.++|||||+|.+.++|.+||.. |+..|+|+.|.|.++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a 91 (114)
T 2cpy_A 13 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVV 91 (114)
T ss_dssp SCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEE
T ss_pred CCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEEC
Confidence 578999999999999999999999999999 7888854 577899999999999999999995 999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 92 ~~~ 94 (114)
T 2cpy_A 92 TLE 94 (114)
T ss_dssp CHH
T ss_pred CHH
Confidence 754
No 162
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.78 E-value=2.2e-18 Score=126.25 Aligned_cols=77 Identities=23% Similarity=0.334 Sum_probs=69.8
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCC--ceEEEEecCCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGGS 84 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~~~~ 84 (270)
.+|||+||+..+|+++|+++|++||+|..|.|.. ..+++||||+|.+.++|..|+..|||..|.| +.|+|++++...
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSSS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCCc
Confidence 4588999999999999999999999999999853 3357899999999999999999999999965 999999998763
No 163
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.78 E-value=1.8e-19 Score=116.67 Aligned_cols=72 Identities=22% Similarity=0.503 Sum_probs=66.8
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
+|||+|||.++|+++|+++|++||+|..|.+.. ++.++|||||+|.++++|.+|+. +++..|+|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 699999999999999999999999999999854 46789999999999999999999 6999999999999874
No 164
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=3.9e-19 Score=121.78 Aligned_cols=78 Identities=19% Similarity=0.253 Sum_probs=70.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||+++|+++|+++|+.||.| .|.|+. ++.++|||||+|.++++|++||. +|+..|+|+.|.|..+.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~~~ 90 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFLNS 90 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 577899999999999999999999999954 888854 56789999999999999999996 89999999999999887
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 91 ~~ 92 (102)
T 1wez_A 91 TA 92 (102)
T ss_dssp CC
T ss_pred CC
Confidence 55
No 165
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.78 E-value=6.5e-19 Score=132.82 Aligned_cols=80 Identities=21% Similarity=0.369 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.||+|..|.|.. ++.++|||||+|.+.++|.+|+..||+..|+|++|.|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4678999999999999999999999999999999965 46789999999999999999999999999999999999987
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 166 ~~ 167 (177)
T 2f3j_A 166 SQ 167 (177)
T ss_dssp SG
T ss_pred CC
Confidence 65
No 166
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.78 E-value=2.7e-18 Score=121.17 Aligned_cols=76 Identities=24% Similarity=0.357 Sum_probs=68.6
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcE-EEEEECCHHHHHHHHHhcCCcccCC--ceEEEEecCCC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVELAHGG 83 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~~~~~ 83 (270)
..|||+||+..+|+++|+++|++||+|..|.+... .+|| |||+|.++++|..|+..|||..|.| +.|+|++++..
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 35669999999999999999999999999988642 3677 9999999999999999999999988 99999999876
Q ss_pred C
Q 024276 84 S 84 (270)
Q Consensus 84 ~ 84 (270)
.
T Consensus 107 ~ 107 (130)
T 3zzy_A 107 S 107 (130)
T ss_dssp S
T ss_pred c
Confidence 3
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.78 E-value=9e-19 Score=116.71 Aligned_cols=73 Identities=29% Similarity=0.549 Sum_probs=68.4
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcc----c-------ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKY----G-------RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~----G-------~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+++++|||+|||.++++++|+++|++| | .|.++.+..+ +|||||+|.++++|.+|+ .||+..|+
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4678999999999999999999999999 8 8999998765 899999999999999999 89999999
Q ss_pred CceEEEEe
Q 024276 72 GCRLRVEL 79 (270)
Q Consensus 72 g~~l~v~~ 79 (270)
|+.|.|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 168
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=2.9e-19 Score=128.32 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=71.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccc---eEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~---v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.+.++|||+|||+++|+++|+++|+.||. |..|.|..+ +.++|||||+|.++++|++||. ||+..|+|+.|.|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~ 120 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVF 120 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEE
Confidence 46789999999999999999999999999 888888643 6788999999999999999999 99999999999999
Q ss_pred ecCC
Q 024276 79 LAHG 82 (270)
Q Consensus 79 ~~~~ 82 (270)
++..
T Consensus 121 ~a~~ 124 (136)
T 2hgl_A 121 KSHR 124 (136)
T ss_dssp ECCH
T ss_pred ECCh
Confidence 8764
No 169
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=6.2e-19 Score=121.83 Aligned_cols=76 Identities=21% Similarity=0.207 Sum_probs=69.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+.++|||+|||.++|+++|+++|+.| .|..|.|+. ++.++|||||+|.++++|.+||. +|+..|+|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCc
Confidence 45799999999999999999999999 899999965 46789999999999999999995 999999999999988754
No 170
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.2e-19 Score=125.88 Aligned_cols=79 Identities=22% Similarity=0.233 Sum_probs=70.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEE-E--ecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-L--KIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~-~--~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||+++|+++|+++|..||.|..+. + ..++.++|||||+|.+.++|.+||. ||+..|+|+.|.|.++
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a 101 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPI 101 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEEC
Confidence 4678999999999999999999999999987633 3 3467889999999999999999999 9999999999999998
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 102 ~~~ 104 (124)
T 1wel_A 102 TKK 104 (124)
T ss_dssp CHH
T ss_pred CHH
Confidence 653
No 171
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.77 E-value=6.1e-19 Score=138.47 Aligned_cols=78 Identities=14% Similarity=0.178 Sum_probs=71.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhccc--ceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYG--RILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G--~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..++|||+|||.++|+++|+++|+.|| .|..|.|+. ++.++|||||+|.+.++|.+||..||+..|+|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999965 567899999999999999999999999999999999999
Q ss_pred cCC
Q 024276 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 172
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.77 E-value=3.9e-19 Score=123.13 Aligned_cols=80 Identities=14% Similarity=0.093 Sum_probs=72.9
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccc---eEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGR---ILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~---v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
..+.++|||+|||.++|+++|+++|..||. |..|.|..+ +.++|||||+|.+.++|.+||. +|+..|+|+.|.|
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V 86 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEV 86 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCC
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEE
Confidence 357899999999999999999999999998 889988543 6789999999999999999999 9999999999999
Q ss_pred EecCCC
Q 024276 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.++...
T Consensus 87 ~~a~~~ 92 (107)
T 2lmi_A 87 YEINNE 92 (107)
T ss_dssp EECCHH
T ss_pred EECCHH
Confidence 998643
No 173
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.76 E-value=3.4e-18 Score=120.23 Aligned_cols=77 Identities=19% Similarity=0.209 Sum_probs=68.5
Q ss_pred CCCe--EEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcE-EEEEECCHHHHHHHHHhcCCcccCC--ceEEEEe
Q 024276 5 FSRT--IYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCY-CFVEFENARDAEDAIRGRDGYNFDG--CRLRVEL 79 (270)
Q Consensus 5 ~s~~--l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~-afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~~ 79 (270)
++++ |||+||+..+|+++|+++|++||.|..|.|... .|| |||+|.+.++|..|+..|||..|.| +.|.|.+
T Consensus 22 ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~ 98 (124)
T 2e5i_A 22 GNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEY 98 (124)
T ss_dssp CCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEEC
T ss_pred CCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEE
Confidence 4555 579999999999999999999999999998642 386 9999999999999999999999987 6999999
Q ss_pred cCCCC
Q 024276 80 AHGGS 84 (270)
Q Consensus 80 ~~~~~ 84 (270)
++...
T Consensus 99 Ak~~~ 103 (124)
T 2e5i_A 99 ARPTR 103 (124)
T ss_dssp CSCSC
T ss_pred ecCCc
Confidence 98763
No 174
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1.2e-18 Score=116.25 Aligned_cols=77 Identities=22% Similarity=0.415 Sum_probs=67.5
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCC
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~ 82 (270)
+.++++|||+|||.++|+++|+++|++||+|..|.|..+ ++|||||+|.+.++|++|+.. .+.+.|+.|.|.++.+
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~ 77 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEP 77 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCC
Confidence 467899999999999999999999999999999998754 689999999999999865442 4566899999999876
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 78 ~ 78 (88)
T 1wf0_A 78 K 78 (88)
T ss_dssp C
T ss_pred C
Confidence 5
No 175
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=2.5e-18 Score=114.78 Aligned_cols=74 Identities=22% Similarity=0.472 Sum_probs=62.6
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCC--cccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDG--YNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~--~~~~g~~l~v~~~~ 81 (270)
.+.++|||+|||.++|+++|+++|++||+|.+|.|+.+ ++|||||+|.++++|.+ |++ +.+.|+.|.|.++.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~ 82 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAE 82 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcC
Confidence 46789999999999999999999999999999999764 68999999999999984 344 44569999999987
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
++
T Consensus 83 ~k 84 (89)
T 3d2w_A 83 PK 84 (89)
T ss_dssp --
T ss_pred CC
Confidence 65
No 176
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.75 E-value=1.9e-18 Score=122.06 Aligned_cols=77 Identities=18% Similarity=0.206 Sum_probs=68.8
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceE--EEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRIL--DIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~--~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
.+.++|||+|||+++|+++|+++|+.| .|. .|.|+. ++.++|||||+|.++++|++||. +++..|+|+.|.|.+
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR~I~V~~ 117 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHRYIEVFK 117 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTBCCCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCEEEEEEE
Confidence 467899999999999999999999999 566 888854 37789999999999999999999 588999999999988
Q ss_pred cCC
Q 024276 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
+..
T Consensus 118 a~~ 120 (126)
T 2hgm_A 118 SSQ 120 (126)
T ss_dssp ECH
T ss_pred CCH
Confidence 753
No 177
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.75 E-value=5.3e-19 Score=127.35 Aligned_cols=78 Identities=18% Similarity=0.240 Sum_probs=70.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
...++|||+|||.++|+++|+++|++|| |+.|.|+. ++.++|||||+|.++++|++|| .+|+..|+|+.|.|..+.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~ 121 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNS 121 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECC
Confidence 4678999999999999999999999999 66888854 4678999999999999999999 599999999999999887
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 122 ~~ 123 (139)
T 2hgn_A 122 TT 123 (139)
T ss_dssp CS
T ss_pred CC
Confidence 65
No 178
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1e-18 Score=123.23 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=70.3
Q ss_pred CCCCCeEEEcCCCCCccHHHHHHHhhcccce----EEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEE
Q 024276 3 GRFSRTIYVGNLPSDIREYEVEDLFYKYGRI----LDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v----~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
..+.++|||+|||+++|+++|+++|+.||.| ..|.|+. ++.++|||||+|.++++|++||. +|+..|+|+.|.
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~-~~~~~l~gR~i~ 98 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALR-KHKDLLGKRYIE 98 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHT-TTTEESSSCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeeCCeEEE
Confidence 3577999999999999999999999999975 5777754 57789999999999999999999 499999999999
Q ss_pred EEecCC
Q 024276 77 VELAHG 82 (270)
Q Consensus 77 v~~~~~ 82 (270)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 179
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.61 E-value=8e-20 Score=128.61 Aligned_cols=80 Identities=28% Similarity=0.342 Sum_probs=74.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEE--------EEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILD--------IELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~--------~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.++++|||+|||..+++++|+++|+.||.|.. |.|.. ++.++|||||+|.+.++|.+|+..||+..|.|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 57899999999999999999999999999998 77754 46789999999999999999999999999999
Q ss_pred ceEEEEecCCC
Q 024276 73 CRLRVELAHGG 83 (270)
Q Consensus 73 ~~l~v~~~~~~ 83 (270)
++|.|.++...
T Consensus 85 ~~l~V~~a~~~ 95 (116)
T 2lcw_A 85 NPIKVSFATRR 95 (116)
Confidence 99999998865
No 180
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.75 E-value=3.5e-17 Score=114.84 Aligned_cols=80 Identities=18% Similarity=0.310 Sum_probs=72.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.|.|.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 81 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLH----GKAIKVE 81 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCS----SSBCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEE
Confidence 457999999999999999999999999999999998763 269999999999999999999999998 9999999
Q ss_pred cCCCCCC
Q 024276 200 RYDRSPS 206 (270)
Q Consensus 200 ~~~~~~~ 206 (270)
.++....
T Consensus 82 ~a~~~~~ 88 (116)
T 2fy1_A 82 QAKKPSF 88 (116)
T ss_dssp ECCCSSC
T ss_pred ECCCCCC
Confidence 9975443
No 181
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.75 E-value=2.3e-18 Score=124.11 Aligned_cols=121 Identities=14% Similarity=0.083 Sum_probs=74.0
Q ss_pred CcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCc
Q 024276 45 PCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSE 124 (270)
Q Consensus 45 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (270)
..++|++|.+...|..|+..+++....|..- +.+. .........
T Consensus 4 ~~~~~~~~~~~~~~~~a~~~~~g~~~~g~~~-~~~~-----------------------------------~~~~~~~~~ 47 (135)
T 2lea_A 4 SHHHHHHSSGLVPRGSHMASMTGGQQMGRGS-MSYG-----------------------------------RPPPDVEGM 47 (135)
T ss_dssp --------------------------------CCSC-----------------------------------CSCSSGGGC
T ss_pred cccccccccCCCchhhhhhhccCCCCCCCCC-CCcC-----------------------------------CCCCCCCCC
Confidence 3578889999999999999888765544321 0100 112233446
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.|.|..
T Consensus 48 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~----g~~l~V~~ 123 (135)
T 2lea_A 48 TSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLD----GRELRVQM 123 (135)
T ss_dssp CCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSS----SSCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEE
Confidence 8999999999999999999999999999999987753 369999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024276 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
++...
T Consensus 124 a~~~~ 128 (135)
T 2lea_A 124 ARYGR 128 (135)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87533
No 182
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.75 E-value=1.3e-18 Score=119.49 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
.++++|||+|||.++++++|+++|+.||.|..|.|.. ++.++|||||+|.+.++|.+|+. ++..|+|+.|.|.++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~ 84 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAI 84 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECC
Confidence 4678999999999999999999999999999999965 46678999999999999999999 9999999999999987
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
..
T Consensus 85 ~~ 86 (102)
T 2xs2_A 85 RK 86 (102)
T ss_dssp EC
T ss_pred cC
Confidence 65
No 183
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.75 E-value=4.3e-18 Score=117.81 Aligned_cols=81 Identities=33% Similarity=0.615 Sum_probs=72.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
....+|||+|||+.+++++|+++|+.|| .|..+.+......|||||+|.+.++|++|++.|||..+. ++.|.|..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~----Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFR----GSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEET----TEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 3458999999999999999999999999 899999876566789999999999999999999999999 99999999
Q ss_pred CCCCCC
Q 024276 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
+...+.
T Consensus 102 a~~~p~ 107 (111)
T 2jvr_A 102 DDNPPP 107 (111)
T ss_dssp SCC---
T ss_pred CCCCCC
Confidence 875543
No 184
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=1.1e-17 Score=113.93 Aligned_cols=76 Identities=26% Similarity=0.405 Sum_probs=70.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+.+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----gr~l~V 93 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ----SKTIKV 93 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEEC----CEEEEE
Confidence 3478999999999999999999999999999999987654 59999999999999999999999998 999999
Q ss_pred ecCC
Q 024276 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
.+++
T Consensus 94 ~~Ak 97 (99)
T 4fxv_A 94 SYAR 97 (99)
T ss_dssp EECC
T ss_pred EEee
Confidence 9885
No 185
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.3e-17 Score=112.42 Aligned_cols=83 Identities=18% Similarity=0.312 Sum_probs=73.9
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.......+|||+|||..+++++|+++|+.||.|..+.+..+.. .+||||+|.+.++|..|++.||+..+. ++.|.
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYD----GYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEE
Confidence 3445668999999999999999999999999999999977654 479999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024276 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.+++..+
T Consensus 93 V~~a~~~~ 100 (109)
T 1x4a_A 93 VEFPRSGR 100 (109)
T ss_dssp EECCCCCC
T ss_pred EEEcccCC
Confidence 99987543
No 186
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.74 E-value=7e-18 Score=119.14 Aligned_cols=75 Identities=25% Similarity=0.482 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|| ++|+++|+++|+.||+|..|.+. .++|||||+|.+.++|.+|+..||+..|+|+.|.|.++...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCC
Confidence 47899999996 69999999999999999999986 45899999999999999999999999999999999999866
No 187
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=116.48 Aligned_cols=74 Identities=26% Similarity=0.414 Sum_probs=62.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC------CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP------PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.++++|||+|||+++|+++|+++|++||+|. +.++.+ +.++|||||+|.++++|++||..|+ .++|+.|.+
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~ 82 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLC 82 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEE
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEe
Confidence 6789999999999999999999999999999 766442 5789999999999999999999883 245555555
Q ss_pred Eec
Q 024276 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
..+
T Consensus 83 ~~~ 85 (114)
T 2dnl_A 83 VSS 85 (114)
T ss_dssp ECC
T ss_pred ccC
Confidence 433
No 188
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.74 E-value=8.4e-17 Score=112.88 Aligned_cols=83 Identities=23% Similarity=0.301 Sum_probs=74.3
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+..+ +||||+|.+.++|.+|++.|||..+. ++.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 96 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIG----MKR 96 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 3445689999999999999999999999999999999988644 59999999999999999999999998 999
Q ss_pred eeeecCCCCCC
Q 024276 196 ITVKRYDRSPS 206 (270)
Q Consensus 196 i~v~~~~~~~~ 206 (270)
|.|.+++....
T Consensus 97 l~V~~a~~~~~ 107 (115)
T 2cpz_A 97 LKVQLKRSKND 107 (115)
T ss_dssp CEEECCCCSCC
T ss_pred EEEEEcCCCCc
Confidence 99999875433
No 189
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.73 E-value=1.3e-17 Score=124.66 Aligned_cols=137 Identities=14% Similarity=0.123 Sum_probs=73.5
Q ss_pred EEECCHHHHHHHHHhcCCcccC--CceEEEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcceE
Q 024276 50 VEFENARDAEDAIRGRDGYNFD--GCRLRVELAHGGSGRGPSSSDRRGGYGGGGAGGAGGAGAGAGAGRFGISRHSEYRV 127 (270)
Q Consensus 50 V~f~~~~~a~~A~~~l~~~~~~--g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 127 (270)
.+|.+.++|..|+..|++.... |+.+.+....... ...+.... ........+......+.++|
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~---------~~~~~~~~------~s~~~~~~~~~~~~~~~~~l 75 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREA---------IHSYERVR------NEDDDELEPGPQRSVEGWIL 75 (165)
T ss_dssp ----------------------------------------------------------------------CCCCC-CEEE
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcccccc---------ccCccccc------cCCCCCCCCCCCCCCCCCEE
Confidence 7899999999999988875553 4444443321110 00000000 00000011112233456899
Q ss_pred EEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 128 IVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 128 ~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
||+|||..+++++|.++|..||.|..+.++.+..+ |||||+|.+.++|..|+..|||..|. +..|.|.++..
T Consensus 76 ~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~~ 151 (165)
T 1rk8_A 76 FVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTIQVDWCFV 151 (165)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEEEESEE
T ss_pred EEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEEC----CEEEEEEEecC
Confidence 99999999999999999999999999999988644 59999999999999999999999998 99999999864
Q ss_pred CC
Q 024276 204 SP 205 (270)
Q Consensus 204 ~~ 205 (270)
.+
T Consensus 152 ~~ 153 (165)
T 1rk8_A 152 KG 153 (165)
T ss_dssp CC
T ss_pred CC
Confidence 33
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.73 E-value=2.4e-17 Score=113.09 Aligned_cols=80 Identities=19% Similarity=0.220 Sum_probs=71.2
Q ss_pred CCCCCeEEEcCCCC-----CccHHHHHHHhhcccceEEEEEecC----CCCCcEEEEEECCHHHHHHHHHhcCCcccCCc
Q 024276 3 GRFSRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKIP----PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 3 ~~~s~~l~V~nl~~-----~~t~~~L~~~F~~~G~v~~~~~~~~----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
..++++|+|.||.. +.++++|+++|++||+|.+|.|..+ +.++|||||+|.++++|.+|+..|||..|+|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 46899999999963 2478999999999999999999653 46799999999999999999999999999999
Q ss_pred eEEEEecCC
Q 024276 74 RLRVELAHG 82 (270)
Q Consensus 74 ~l~v~~~~~ 82 (270)
+|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999864
No 191
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.73 E-value=1.6e-17 Score=118.53 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=72.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..|. +..|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 94 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 94 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CeEE
Confidence 34568999999999999999999999999999999987753 369999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024276 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|.++....
T Consensus 95 ~v~~a~~~~ 103 (126)
T 3ex7_B 95 SVDWCFVRG 103 (126)
T ss_dssp EEEESEESS
T ss_pred EEEEecCCC
Confidence 999987433
No 192
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=7.7e-17 Score=110.80 Aligned_cols=83 Identities=17% Similarity=0.269 Sum_probs=73.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeC--CCCcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+ ...+||||+|.+.++|..|++.|||..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVA----TKPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 3446789999999999999999999999999999999987 22369999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024276 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2d9p_A 87 VALAQRKEE 95 (103)
T ss_dssp EEECSSCCC
T ss_pred EEEeccccc
Confidence 999875443
No 193
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=1.5e-17 Score=129.59 Aligned_cols=79 Identities=25% Similarity=0.343 Sum_probs=72.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
..++|||+|||..+|+++|+++|+.||.|..|.|+.+ +.++|||||+|.+.++|.+||..|||..|+|++|.|.++..+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCH
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCC
Confidence 4678999999999999999999999999999999653 456899999999999999999999999999999999998764
No 194
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.3e-17 Score=123.35 Aligned_cols=78 Identities=22% Similarity=0.405 Sum_probs=73.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.++++|||+|||..+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|++|.|.++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a 164 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWA 164 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcEEEEEec
Confidence 5678999999999999999999999999999999964 4677899999999999999999999999999999999998
Q ss_pred C
Q 024276 81 H 81 (270)
Q Consensus 81 ~ 81 (270)
.
T Consensus 165 ~ 165 (166)
T 3md3_A 165 A 165 (166)
T ss_dssp C
T ss_pred C
Confidence 5
No 195
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.72 E-value=2.9e-16 Score=110.13 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=75.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|..||.|..+.++.+... |||||+|.+.++|..|++.|||..+. ++
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GR 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEET----TE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 34456789999999999999999999999999999999988543 59999999999999999999999998 99
Q ss_pred ceeeecCCCCCCC
Q 024276 195 RITVKRYDRSPSR 207 (270)
Q Consensus 195 ~i~v~~~~~~~~r 207 (270)
.|.|.++...+..
T Consensus 86 ~l~V~~a~~~~~~ 98 (115)
T 2dgo_A 86 QIRTNWATRKPPA 98 (115)
T ss_dssp ECEEEESSCCCCC
T ss_pred EEEEEEccCCCCC
Confidence 9999999755443
No 196
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-16 Score=108.87 Aligned_cols=83 Identities=11% Similarity=0.138 Sum_probs=74.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC--cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 86 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKIL----GKEVK 86 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcC----CCeEE
Confidence 3445689999999999999999999999999999999987543 69999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024276 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2cqi_A 87 VNWATTPSS 95 (103)
T ss_dssp EEECCCTTC
T ss_pred EEECCCCcc
Confidence 999875443
No 197
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.72 E-value=4.5e-17 Score=105.70 Aligned_cols=73 Identities=12% Similarity=0.127 Sum_probs=68.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
...|||+||++.+++++|+++|.+||+|..+++.. ..|||||+|.+.++|.+|++.||+..+. ++.|.|+.+.
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~--~kGfaFVey~~~~eA~~Ai~~Ln~~~l~----gr~I~V~~A~ 79 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL--NQGIALCKYTTREEANKAQMALNNCVLA----NTTIFAESPS 79 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET--TTTEEEEEESSHHHHHHHHHHHTTEEET----TEEEEEECCC
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC--CCcEEEEEECCHHHHHHHHHHhcCCEEC----CcEEEEEECC
Confidence 46899999999999999999999999999999877 4589999999999999999999999999 9999998873
No 198
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-16 Score=108.82 Aligned_cols=83 Identities=22% Similarity=0.268 Sum_probs=74.4
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC--CcEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.......+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|..|+..|||..+. ++.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3345568999999999999999999999999999999988754 469999999999999999999999998 9999
Q ss_pred eeecCCCCC
Q 024276 197 TVKRYDRSP 205 (270)
Q Consensus 197 ~v~~~~~~~ 205 (270)
.|..+....
T Consensus 86 ~v~~a~~~~ 94 (103)
T 2cq3_A 86 EVNNATARV 94 (103)
T ss_dssp EEEECCSSC
T ss_pred EEEEcccCC
Confidence 999987543
No 199
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.72 E-value=3.5e-17 Score=127.79 Aligned_cols=80 Identities=26% Similarity=0.474 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a 202 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKA 202 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCEEEEC
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEEEEEe
Confidence 4568999999999999999999999999999999965 4677899999999999999999999999999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
...
T Consensus 203 ~~~ 205 (216)
T 2qfj_A 203 VTP 205 (216)
T ss_dssp SSC
T ss_pred cCC
Confidence 876
No 200
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.5e-16 Score=108.69 Aligned_cols=83 Identities=22% Similarity=0.363 Sum_probs=74.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|||..+. ++.|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 88 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIK----ENII 88 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEEC----CEEE
Confidence 3455689999999999999999999999999999999987733 69999999999999999999999998 9999
Q ss_pred eeecCCCCCC
Q 024276 197 TVKRYDRSPS 206 (270)
Q Consensus 197 ~v~~~~~~~~ 206 (270)
.|..+...+.
T Consensus 89 ~v~~a~~~~~ 98 (100)
T 2do4_A 89 KVAISNSGPS 98 (100)
T ss_dssp EEEECCCCSC
T ss_pred EEEECCCCCC
Confidence 9999875443
No 201
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.6e-16 Score=110.18 Aligned_cols=81 Identities=23% Similarity=0.326 Sum_probs=73.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+|||+|||..+++++|+++|..||.|..+.++.+..+ +||||+|.+.++|..|++.|||..+. ++.|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 87 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLF----DRPMH 87 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeC----CCEEE
Confidence 345689999999999999999999999999999999988653 59999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024276 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..++...
T Consensus 88 v~~a~~~~ 95 (114)
T 2do0_A 88 VKMDERAL 95 (114)
T ss_dssp EEECSCCC
T ss_pred EEEcccCC
Confidence 99986543
No 202
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=108.49 Aligned_cols=80 Identities=19% Similarity=0.242 Sum_probs=72.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
......+|||+|||..+++++|+++|..||.|. +.++.+...|||||+|.+.++|..|++.|||..+. ++.|.|.
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~ 89 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLG----TDTLRVA 89 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSS----SSCCEEE
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 344568999999999999999999999999997 67777777789999999999999999999999998 9999999
Q ss_pred cCCCC
Q 024276 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
.+...
T Consensus 90 ~a~~~ 94 (97)
T 2e5j_A 90 LARQQ 94 (97)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98643
No 203
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.1e-17 Score=115.89 Aligned_cols=78 Identities=24% Similarity=0.354 Sum_probs=68.8
Q ss_pred CCeEEEcCC----CCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECC----HHH----HHHHHH--hcCCc
Q 024276 6 SRTIYVGNL----PSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFEN----ARD----AEDAIR--GRDGY 68 (270)
Q Consensus 6 s~~l~V~nl----~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~----~~~----a~~A~~--~l~~~ 68 (270)
.+.|||+|| |+.+++++|+++|+.||+|.+|.++. |+.++|||||+|.+ +++ |.+|+. .|||.
T Consensus 2 p~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~ 81 (136)
T 2j8a_A 2 SCEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGC 81 (136)
T ss_dssp CCEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCE
T ss_pred CcEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCC
Confidence 479999999 99999999999999999999999965 57889999999996 444 788988 78999
Q ss_pred ccCCceEEEEecCCC
Q 024276 69 NFDGCRLRVELAHGG 83 (270)
Q Consensus 69 ~~~g~~l~v~~~~~~ 83 (270)
.|+|++|+|.+....
T Consensus 82 ~I~Gr~irV~ln~~g 96 (136)
T 2j8a_A 82 FIMGFKFEVILNKHS 96 (136)
T ss_dssp EETTEEEEEEECCTT
T ss_pred eecCcEEEEEECccc
Confidence 999999999987754
No 204
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.71 E-value=2.2e-17 Score=128.97 Aligned_cols=77 Identities=25% Similarity=0.349 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCc---------cHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCccc----
Q 024276 4 RFSRTIYVGNLPSDI---------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNF---- 70 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~---------t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~---- 70 (270)
.++++|||+||+..+ ++++|+++|++||+|.+|.|+.. +|||||+|.+.++|+.|+..|+|..|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 468999999999998 79999999999999999999864 89999999999999999999999999
Q ss_pred --------CCceEEEEecCCC
Q 024276 71 --------DGCRLRVELAHGG 83 (270)
Q Consensus 71 --------~g~~l~v~~~~~~ 83 (270)
.|+.|.|.++...
T Consensus 209 ~~e~~~~~~gr~L~V~wA~~~ 229 (240)
T 3u1l_A 209 DKEWDDRREGTGLLVKWANED 229 (240)
T ss_dssp STTGGGGGGSCCCEEEECC--
T ss_pred cccccccCCCCEEEEEEccCC
Confidence 8999999999865
No 205
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.3e-16 Score=109.68 Aligned_cols=84 Identities=15% Similarity=0.234 Sum_probs=74.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. ++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYD----HLI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 3455689999999999999999999999999999999987643 59999999999999999999999998 999
Q ss_pred eeeecCCCCCCC
Q 024276 196 ITVKRYDRSPSR 207 (270)
Q Consensus 196 i~v~~~~~~~~r 207 (270)
|.|.++.....+
T Consensus 87 l~v~~a~~~~~~ 98 (103)
T 2cq0_A 87 LNVEWAKPSTNS 98 (103)
T ss_dssp CEEEESSCCCCS
T ss_pred EEEEECCCCCCC
Confidence 999998754443
No 206
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=7.2e-17 Score=109.74 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=68.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC--ccccCcccccceeee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||+.+++++|+++|+.||.|..+.++.+ .|||||+|++.++|..|++.|++ ..+. |+.|.|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~--kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~----Gr~l~V~ 87 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIYIQ 87 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTSCCEET----TEECCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEEE
Confidence 34589999999999999999999999999999999986 47999999999999999998864 6777 9999999
Q ss_pred cCCC
Q 024276 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
++..
T Consensus 88 ~A~~ 91 (105)
T 1sjq_A 88 FSNH 91 (105)
T ss_dssp CCSS
T ss_pred EcCC
Confidence 9864
No 207
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.71 E-value=5.6e-17 Score=113.67 Aligned_cols=77 Identities=22% Similarity=0.389 Sum_probs=70.8
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC--cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG--TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~--g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|+|..+. ++.|.|..+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~----g~~i~V~~a 80 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLN----DRKVFVGRF 80 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEEC----CEEEEEEEC
Confidence 368999999999999999999999999999999988654 69999999999999999999999998 999999988
Q ss_pred CCC
Q 024276 202 DRS 204 (270)
Q Consensus 202 ~~~ 204 (270)
...
T Consensus 81 ~~~ 83 (115)
T 4f25_A 81 KSR 83 (115)
T ss_dssp SCC
T ss_pred CCc
Confidence 643
No 208
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.71 E-value=2.7e-16 Score=108.45 Aligned_cols=81 Identities=19% Similarity=0.222 Sum_probs=73.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccc---cc
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR---GR 195 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~---~~ 195 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|||..+. + ..
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----gg~~~~ 88 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTM----PGASSS 88 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCC----TTCSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccC----CCCCcc
Confidence 45689999999999999999999999999999999988643 69999999999999999999999988 6 89
Q ss_pred eeeecCCCCCC
Q 024276 196 ITVKRYDRSPS 206 (270)
Q Consensus 196 i~v~~~~~~~~ 206 (270)
|.|.++...+.
T Consensus 89 l~V~~a~~~~~ 99 (105)
T 2dnh_A 89 LVVKFADTDKE 99 (105)
T ss_dssp CEEEESCSSCC
T ss_pred EEEEECccCcc
Confidence 99999975544
No 209
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=1.2e-16 Score=107.96 Aligned_cols=79 Identities=18% Similarity=0.196 Sum_probs=71.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|..|++.|||..+. ++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 87 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLF----GRV 87 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEET----TEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeC----CcE
Confidence 344568999999999999999999999999999999988755 369999999999999999999999998 999
Q ss_pred eeeecCC
Q 024276 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|.+++
T Consensus 88 l~v~~ak 94 (94)
T 2e5h_A 88 IKASIAI 94 (94)
T ss_dssp EEEEECC
T ss_pred EEEEecC
Confidence 9998763
No 210
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.70 E-value=3.4e-17 Score=123.62 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=72.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++++|||+|||..+|+++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..|+|++|.|.++.++
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 357899999999999999999999999999887 667888999999999999999999999999999999999998765
No 211
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=5.6e-17 Score=110.26 Aligned_cols=76 Identities=11% Similarity=0.072 Sum_probs=68.9
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc--ccCcccccceee
Q 024276 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~--~~~~~~~~~i~v 198 (270)
.+..+|||+|||+ .+++++|+++|+.||.|..+.++.++ +||||+|++.++|..|++.|++.. +. |+.|.|
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k--g~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~V 86 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI--NEAFIEMATTEDAQAAVDYYTTTPALVF----GKPVRV 86 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS--SCEEEEESSHHHHHHHHHHHHHSCCEET----TEECEE
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC--CEEEEEECCHHHHHHHHHHHcCCCceEC----CcEEEE
Confidence 4568999999999 99999999999999999999998765 699999999999999999998754 66 999999
Q ss_pred ecCCC
Q 024276 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 87 ~~a~~ 91 (102)
T 1x4d_A 87 HLSQK 91 (102)
T ss_dssp EEECC
T ss_pred EECCC
Confidence 99874
No 212
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.9e-16 Score=108.83 Aligned_cols=82 Identities=17% Similarity=0.196 Sum_probs=73.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 84 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELD----GRE 84 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBT----TBC
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEEC----CcE
Confidence 334568999999999999999999999999999999988754 369999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024276 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..++...
T Consensus 85 l~V~~a~~~~ 94 (103)
T 2dnm_A 85 LRVQVARYGR 94 (103)
T ss_dssp CEEEECSSCC
T ss_pred EEEEECCcCC
Confidence 9999997543
No 213
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=111.00 Aligned_cols=77 Identities=21% Similarity=0.120 Sum_probs=71.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|++||.|..+.++.+..+ |||||+|++.++|.+|++.|||..+. ++.|.|
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~----gr~i~V 80 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVM----GNIIHA 80 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEE
Confidence 4579999999999999999999999999999999988764 59999999999999999999999999 999999
Q ss_pred ecCCC
Q 024276 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..+..
T Consensus 81 ~~a~~ 85 (110)
T 3s8s_A 81 QLDIK 85 (110)
T ss_dssp EECST
T ss_pred EECCC
Confidence 98864
No 214
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.2e-16 Score=111.38 Aligned_cols=79 Identities=22% Similarity=0.340 Sum_probs=69.9
Q ss_pred CCCCeEEEcCCCCCc-----------cHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCC
Q 024276 4 RFSRTIYVGNLPSDI-----------REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG 72 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~-----------t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 72 (270)
.++++|+|.||.... ++++|+++|++||+|..|.| .+..++|||||+|.+.++|.+|+..|||..|+|
T Consensus 13 ~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 13 RHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 578999999994432 26899999999999999966 555689999999999999999999999999999
Q ss_pred ceEEEEecCCC
Q 024276 73 CRLRVELAHGG 83 (270)
Q Consensus 73 ~~l~v~~~~~~ 83 (270)
++|.|.++.+.
T Consensus 92 r~l~v~~a~~~ 102 (112)
T 2dit_A 92 RQITAQAWDGT 102 (112)
T ss_dssp EECEEEECCSC
T ss_pred cEEEEEEeCCC
Confidence 99999998765
No 215
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.70 E-value=4e-17 Score=122.83 Aligned_cols=76 Identities=22% Similarity=0.447 Sum_probs=71.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
..++|||+|||..+|+++|+++|++||+|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|+|++|.|.++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~A 171 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 171 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeC
Confidence 468999999999999999999999999999999954 4667899999999999999999999999999999999986
No 216
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=6.2e-17 Score=124.62 Aligned_cols=80 Identities=23% Similarity=0.446 Sum_probs=74.7
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEec
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELA 80 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~ 80 (270)
.+.++|||+|||..+++++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..|+|+.|.|.++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 191 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRA 191 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 4679999999999999999999999999999999964 4667899999999999999999999999999999999999
Q ss_pred CCC
Q 024276 81 HGG 83 (270)
Q Consensus 81 ~~~ 83 (270)
.+.
T Consensus 192 ~~~ 194 (198)
T 2yh0_A 192 SVG 194 (198)
T ss_dssp CCC
T ss_pred CCC
Confidence 875
No 217
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.2e-16 Score=108.71 Aligned_cols=83 Identities=16% Similarity=0.406 Sum_probs=73.3
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC-----CcEEEEEecChhhHHHHHHhcCCccccCcccc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
.+..+..+|||+|||..+++++|+++|..|| |..+.++.+.. .|||||+|.+.++|.+|+ .||+..+. +
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----N 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEET----T
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeC----C
Confidence 3445668999999999999999999999999 99999988764 369999999999999999 99999998 9
Q ss_pred cceeeecCCCCCCC
Q 024276 194 GRITVKRYDRSPSR 207 (270)
Q Consensus 194 ~~i~v~~~~~~~~r 207 (270)
+.|.|..+.....+
T Consensus 84 ~~l~V~~a~~~~~~ 97 (104)
T 1wi8_A 84 KRIRVDVADQAQDK 97 (104)
T ss_dssp EECEEEECCCCCCC
T ss_pred cEEEEEEccCCCCC
Confidence 99999998755443
No 218
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=3.4e-16 Score=106.72 Aligned_cols=80 Identities=21% Similarity=0.228 Sum_probs=72.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.|.|
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 82 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQ----GRMLHV 82 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESS----SCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEE
Confidence 458999999999999999999999999999999988763 369999999999999999999999998 999999
Q ss_pred ecCCCCCC
Q 024276 199 KRYDRSPS 206 (270)
Q Consensus 199 ~~~~~~~~ 206 (270)
..+.....
T Consensus 83 ~~a~~~~~ 90 (99)
T 1whw_A 83 LPSTIKKE 90 (99)
T ss_dssp EECCCCST
T ss_pred EEcCCCcc
Confidence 99976544
No 219
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=107.47 Aligned_cols=80 Identities=24% Similarity=0.377 Sum_probs=72.1
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
.......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. ++.
T Consensus 11 ~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (95)
T 2ywk_A 11 AQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLY----GRP 86 (95)
T ss_dssp -CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEEC----CCE
Confidence 34456689999999999999999999999999999999987653 59999999999999999999999998 999
Q ss_pred eeeecCC
Q 024276 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..++
T Consensus 87 l~V~~a~ 93 (95)
T 2ywk_A 87 INVSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEEcC
Confidence 9998874
No 220
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.9e-16 Score=106.23 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=72.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
....+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. ++
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GR 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEET----TE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CE
Confidence 33456789999999999999999999999999999999987654 59999999999999999999999998 99
Q ss_pred ceeeecCC
Q 024276 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|.+++
T Consensus 86 ~l~v~~a~ 93 (95)
T 2cqc_A 86 RIRVSGPS 93 (95)
T ss_dssp EEEEECCS
T ss_pred EEEEEecC
Confidence 99998875
No 221
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.69 E-value=3.6e-17 Score=122.48 Aligned_cols=78 Identities=22% Similarity=0.472 Sum_probs=72.6
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
++++|||+|||..+|+++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|++ +++..|+|++|.|.++.
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~ 164 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEIKRAE 164 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEEEECC
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEEeecC
Confidence 467999999999999999999999999999999964 47789999999999999999999 99999999999999987
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
++
T Consensus 165 pk 166 (167)
T 2cjk_A 165 PR 166 (167)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 222
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.1e-16 Score=103.90 Aligned_cols=77 Identities=19% Similarity=0.327 Sum_probs=70.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++ .+||||+|.+.++|..|++.|||..+. ++.|.|..+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~a 77 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII----KNYGFVHIEDKTAAEDAIRNLHHYKLH----GVNINVEAS 77 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE----TTEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEECS
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE----CCEEEEEECCHHHHHHHHHHhcCCccC----CcEEEEEEC
Confidence 345899999999999999999999999999999998 369999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024276 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
.....
T Consensus 78 ~~~~~ 82 (90)
T 2dnq_A 78 KNKSK 82 (90)
T ss_dssp SCCCC
T ss_pred CCCCC
Confidence 75444
No 223
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=5.2e-16 Score=106.99 Aligned_cols=81 Identities=27% Similarity=0.375 Sum_probs=73.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|||..+. ++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 86 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLY----GKP 86 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCS----SCB
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 3445689999999999999999999999999999999887633 69999999999999999999999998 999
Q ss_pred eeeecCCCC
Q 024276 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|..+...
T Consensus 87 l~v~~a~~~ 95 (105)
T 1x5u_A 87 IRVNKASAH 95 (105)
T ss_dssp CEEEETTTT
T ss_pred EEEEECCCC
Confidence 999998643
No 224
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.3e-16 Score=107.43 Aligned_cols=80 Identities=25% Similarity=0.368 Sum_probs=72.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.|.
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVD----GRQIR 85 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTT----SCCCE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 3558999999999999999999999999999999988754 369999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024276 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.++....
T Consensus 86 v~~a~~~~ 93 (102)
T 1x5s_A 86 VDQAGKSS 93 (102)
T ss_dssp EEEEECCC
T ss_pred EEECCCCC
Confidence 99986543
No 225
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=4.8e-16 Score=105.14 Aligned_cols=80 Identities=16% Similarity=0.233 Sum_probs=72.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.|.|
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V 79 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELA----GRPMRV 79 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSS----SSCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 457999999999999999999999999999999998754 369999999999999999999999998 999999
Q ss_pred ecCCCCCC
Q 024276 199 KRYDRSPS 206 (270)
Q Consensus 199 ~~~~~~~~ 206 (270)
..+.....
T Consensus 80 ~~a~~~~~ 87 (95)
T 2dnz_A 80 GHVTERLD 87 (95)
T ss_dssp EESSCCCC
T ss_pred EEcccccC
Confidence 99975444
No 226
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=2.7e-16 Score=106.51 Aligned_cols=79 Identities=20% Similarity=0.215 Sum_probs=72.1
Q ss_pred CcceEEEeCCCCCCCHHHHH----HHhhhcCceeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 123 SEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...+|||+|||..+++++|+ ++|+.||.|..+.++.+.. .+||||+|.+.++|.+|++.|||..+. ++.|.
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~----gr~l~ 83 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIG----SKKIL 83 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 45799999999999999999 9999999999999987754 479999999999999999999999998 99999
Q ss_pred eecCCCCC
Q 024276 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..++..+
T Consensus 84 V~~a~~~~ 91 (96)
T 2dgx_A 84 VSLATGAS 91 (96)
T ss_dssp EEECCCSS
T ss_pred EEEcCCCC
Confidence 99986543
No 227
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=6.8e-16 Score=106.79 Aligned_cols=83 Identities=18% Similarity=0.411 Sum_probs=73.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeC-C----CCcEEEEEecChhhHHHHHHhc-CCccccCcccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD-S----EGTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWAR 193 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~-~----~~g~afv~f~~~~~a~~a~~~l-~g~~~~~~~~~ 193 (270)
......+|||+|||..+++++|+++|..||.|..+.++.+ . ..|||||+|.+.++|..|+..| ||..+. +
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~----g 86 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY----G 86 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS----S
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC----C
Confidence 3456689999999999999999999999999999999877 2 2369999999999999999999 999998 9
Q ss_pred cceeeecCCCCCC
Q 024276 194 GRITVKRYDRSPS 206 (270)
Q Consensus 194 ~~i~v~~~~~~~~ 206 (270)
+.|.|.++.....
T Consensus 87 ~~l~v~~a~~~~~ 99 (107)
T 2cph_A 87 RRLVLEWADSEVT 99 (107)
T ss_dssp CBCEEEECCCCCC
T ss_pred CEEEEEeCCCCCC
Confidence 9999999975444
No 228
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.68 E-value=1e-16 Score=123.20 Aligned_cols=80 Identities=23% Similarity=0.404 Sum_probs=71.0
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+.++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+. +++..|+|+.|.|.++.
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~-~~~~~~~G~~i~v~~a~ 181 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI-QKYHTVNGHNCEVRKAL 181 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHH-CSCCEETTEECEEEECC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHH-hCCcEECCEEEEEEecC
Confidence 468999999999999999999999999999999965 46779999999999999999999 48999999999999998
Q ss_pred CCCC
Q 024276 82 GGSG 85 (270)
Q Consensus 82 ~~~~ 85 (270)
++..
T Consensus 182 ~k~~ 185 (196)
T 1l3k_A 182 SKQE 185 (196)
T ss_dssp ----
T ss_pred ChhH
Confidence 7643
No 229
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=6.6e-16 Score=105.27 Aligned_cols=80 Identities=19% Similarity=0.375 Sum_probs=71.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++ |++..+. ++.|.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~l~ 82 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIM----GKKVE 82 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEEC----CeEEE
Confidence 4558999999999999999999999999999999988754 3699999999999999999 9999998 99999
Q ss_pred eecCCCCCC
Q 024276 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 83 V~~a~~~~~ 91 (99)
T 2dgs_A 83 VKRAEPRDS 91 (99)
T ss_dssp EEECCCCCC
T ss_pred EEECCCCcc
Confidence 999875443
No 230
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=7.5e-16 Score=107.32 Aligned_cols=83 Identities=11% Similarity=0.172 Sum_probs=73.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcC------CccccC
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLD------DTEFRN 189 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~------g~~~~~ 189 (270)
...+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|..|++.|| +..+.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~- 89 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLD- 89 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESS-
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEc-
Confidence 344568999999999999999999999999999999997754 3699999999999999999999 99998
Q ss_pred cccccceeeecCCCCCC
Q 024276 190 PWARGRITVKRYDRSPS 206 (270)
Q Consensus 190 ~~~~~~i~v~~~~~~~~ 206 (270)
++.|.|.++.....
T Consensus 90 ---g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 90 ---GRQLKVDLAVTRDE 103 (111)
T ss_dssp ---SCEEEEECCCCCCC
T ss_pred ---CEEEEEEECCCCcc
Confidence 99999999875433
No 231
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=7e-16 Score=105.94 Aligned_cols=82 Identities=15% Similarity=0.273 Sum_probs=72.5
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.+..+..+|||+|||..+++++|+++|+.|| |..+.++.+..+ |||||+|.+.++|..|+ .|||..+. ++
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~ 83 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLG----DR 83 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEET----TE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeEC----Ce
Confidence 3445678999999999999999999999997 999999988753 59999999999999999 89999998 99
Q ss_pred ceeeecCCCCCC
Q 024276 195 RITVKRYDRSPS 206 (270)
Q Consensus 195 ~i~v~~~~~~~~ 206 (270)
.|.|..+.....
T Consensus 84 ~l~V~~a~~~~~ 95 (103)
T 2dng_A 84 SLRVDIAEGRKQ 95 (103)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEecCCCC
Confidence 999999875433
No 232
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=106.61 Aligned_cols=76 Identities=16% Similarity=0.179 Sum_probs=68.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc--ccCcccccceeee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~--~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|.++|+.||.|..+.++.. .|+|||+|++.++|..|++.|++.. +. |+.|.|.
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~--kg~AFVef~~~~~A~~Av~~ln~~~~~i~----Gr~i~V~ 92 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK--KRQALVEFEDVLGACNAVNYAADNQIYIA----GHPAFVN 92 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCEEET----TEEEEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC--CCEEEEEECCHHHHHHHHHHhcCCCceeC----CcEEEEE
Confidence 45689999999999999999999999999999998864 4799999999999999999999876 55 8999999
Q ss_pred cCCC
Q 024276 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
+++.
T Consensus 93 ~S~~ 96 (100)
T 3r27_A 93 YSTS 96 (100)
T ss_dssp ECSC
T ss_pred eccc
Confidence 8864
No 233
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=107.72 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=70.6
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCCC
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDRS 204 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~~ 204 (270)
++|||+|||..+++++|+++|+.||.|..+.++.+ ..|||||+|.+.++|..|++.|||..+. +..|.|..+...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-PPGFAFVEFEDPRDAEDAVRGLDGKVIC----GSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-SSSEEEEECSSHHHHHHHHHHHHHSCSS----SCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-CCCEEEEEECCHHHHHHHHHHHCCCeEC----CcEEEEEEccCC
Confidence 47999999999999999999999999999999988 5679999999999999999999999998 999999998754
Q ss_pred C
Q 024276 205 P 205 (270)
Q Consensus 205 ~ 205 (270)
+
T Consensus 76 ~ 76 (101)
T 2hvz_A 76 P 76 (101)
T ss_dssp C
T ss_pred C
Confidence 4
No 234
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.68 E-value=5.4e-16 Score=107.10 Aligned_cols=83 Identities=19% Similarity=0.244 Sum_probs=73.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccc---cCccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEF---RNPWA 192 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~---~~~~~ 192 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+ .
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~---- 84 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGM---- 84 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTC----
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCC----
Confidence 344568999999999999999999999999999999988754 36999999999999999999999887 5
Q ss_pred ccceeeecCCCCCC
Q 024276 193 RGRITVKRYDRSPS 206 (270)
Q Consensus 193 ~~~i~v~~~~~~~~ 206 (270)
++.|.|.++.....
T Consensus 85 g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 85 NRPIQVKPADSESR 98 (106)
T ss_dssp SSCCEEEECCCCSC
T ss_pred CceEEEEECCcccc
Confidence 89999999875443
No 235
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=6e-16 Score=105.92 Aligned_cols=77 Identities=19% Similarity=0.215 Sum_probs=68.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcc--ccCcccccceee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTE--FRNPWARGRITV 198 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~--~~~~~~~~~i~v 198 (270)
..+..+|||+|||..+++++|+++|++||.|..+.++.+ .|||||+|++.++|..|++.|++.. +. ++.|.|
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~i~----Gr~l~V 85 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF--KRQALVEFENIDSAKECVTFAADVPVYIA----GQQAFF 85 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCBSS----SSBCEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEEEE
Confidence 345689999999999999999999999999999998875 4799999999999999999987654 66 999999
Q ss_pred ecCCC
Q 024276 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 86 ~~a~~ 90 (104)
T 1wex_A 86 NYSTS 90 (104)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99864
No 236
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.68 E-value=1.4e-16 Score=121.86 Aligned_cols=77 Identities=17% Similarity=0.361 Sum_probs=70.0
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecCCC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAHGG 83 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~~~ 83 (270)
.++|||+|||.++|+++|.++|++||+|..|.|.. ++.++|||||+|.++++|.+|+..+ +..|+|++|.|.++...
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 58999999999999999999999999999999965 4667899999999999999999855 56999999999998765
No 237
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=3.8e-16 Score=106.22 Aligned_cols=78 Identities=10% Similarity=0.101 Sum_probs=69.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC--CccccCccccccee
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~--g~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+ .|||||+|++.++|..|++.|+ +..+. |+.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~~~----Gr~l~ 84 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG--KNQAFLELATEEAAITMVNYYSAVTPHLR----NQPIY 84 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHHHSCCEET----TEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CcEEE
Confidence 3345689999999999999999999999999999988876 4799999999999999999874 56677 99999
Q ss_pred eecCCC
Q 024276 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|.++..
T Consensus 85 V~~a~~ 90 (101)
T 2cq1_A 85 IQYSNH 90 (101)
T ss_dssp EEECSC
T ss_pred EEEcCc
Confidence 999864
No 238
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.68 E-value=1.9e-16 Score=105.56 Aligned_cols=78 Identities=14% Similarity=0.277 Sum_probs=71.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-----CCcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
..+|||+|||..+++++|.++|+.||.|..+.++.+. ..|||||+|.+.++|..|++.|||..+. |+.|.|
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 79 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQID----GQEITA 79 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeEC----CeEEEE
Confidence 4799999999999999999999999999999998776 4579999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 024276 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+....
T Consensus 80 ~~a~~~~ 86 (88)
T 4a8x_A 80 TAVLAPW 86 (88)
T ss_dssp EEECCCC
T ss_pred EECCCCC
Confidence 9886443
No 239
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=8e-16 Score=104.44 Aligned_cols=81 Identities=17% Similarity=0.287 Sum_probs=71.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.+..+ .+||||+|.+.++|++|++.|||..+.. .++.|.|.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~--~g~~l~V~~a 90 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG--DSFAYIQYESLDAAQAACAKMRGFPLGG--PDRRLRVDFA 90 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS--SCCEEEEESSHHHHHHHHHHHTTCBCSS--SSCBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC--CCEEEEEECCHHHHHHHHHHHCCCEeCC--CCcEEEEEEC
Confidence 44589999999999999999999999999999998876 4699999999999999999999988762 1688999988
Q ss_pred CCCCC
Q 024276 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
+..+.
T Consensus 91 ~~~~~ 95 (97)
T 1why_A 91 KSGPS 95 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75443
No 240
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=110.28 Aligned_cols=78 Identities=10% Similarity=0.088 Sum_probs=69.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC--ccccCccccccee
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~~~~~~~~i~ 197 (270)
...+..+|||+|||+.+++++|+++|+.||.|..+.++.+ .|||||+|++.++|..|++.|++ ..+. |+.|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~--kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~----Gr~l~ 100 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG--KNQAFIEMNTEEAANTMVNYYTSVTPVLR----GQPIY 100 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG--GTEEEEECSCHHHHHHHHHHHHHHCCCBT----TBCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CeEEE
Confidence 3455689999999999999999999999999999999986 47999999999999999999875 5677 99999
Q ss_pred eecCCC
Q 024276 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|.++..
T Consensus 101 V~~a~~ 106 (119)
T 2ad9_A 101 IQFSNH 106 (119)
T ss_dssp EEECSS
T ss_pred EEEccC
Confidence 999864
No 241
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=1.5e-16 Score=119.25 Aligned_cols=77 Identities=30% Similarity=0.493 Sum_probs=71.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCC--ceEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDG--CRLRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g--~~l~v~ 78 (270)
.++++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.| ++|.|.
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~ 166 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVR 166 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEE
Confidence 4678999999999999999999999999999999965 45678999999999999999999999999987 999998
Q ss_pred ec
Q 024276 79 LA 80 (270)
Q Consensus 79 ~~ 80 (270)
++
T Consensus 167 ~A 168 (168)
T 1b7f_A 167 LA 168 (168)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 242
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=2.6e-16 Score=104.62 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=70.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|||..+. ++.|.|
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v 80 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLG----GRQIRT 80 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEE
Confidence 4589999999999999999999999999999999987543 59999999999999999999999998 999999
Q ss_pred ecCCCC
Q 024276 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..++..
T Consensus 81 ~~a~~k 86 (87)
T 3bs9_A 81 NWATRK 86 (87)
T ss_dssp EEEC--
T ss_pred EecCCC
Confidence 988643
No 243
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2e-16 Score=109.07 Aligned_cols=78 Identities=13% Similarity=0.072 Sum_probs=68.8
Q ss_pred CCCCcceEEEeCCCCC-CCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC--ccccCcccccce
Q 024276 120 SRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD--TEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g--~~~~~~~~~~~i 196 (270)
...+..+|||+|||+. +++++|+++|+.||.|..+.++.. .|||||+|++.++|..|++.|++ ..+. |+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~--kg~aFVef~~~~~A~~Ai~~l~~~~~~l~----Gr~l 94 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM--KSQAFIEMETREDAMAMVDHCLKKALWFQ----GRCV 94 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT--TTEEEEECSSHHHHHHHHHHHHHSCCCSS----SSCC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC--CCEEEEEECCHHHHHHHHHHhccCCceEC----CEEE
Confidence 3456789999999998 999999999999999999999864 47999999999999999998865 4577 9999
Q ss_pred eeecCCC
Q 024276 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|.++..
T Consensus 95 ~V~~a~~ 101 (112)
T 1x4f_A 95 KVDLSEK 101 (112)
T ss_dssp EEEEECS
T ss_pred EEEECcc
Confidence 9999864
No 244
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=3.4e-16 Score=111.77 Aligned_cols=81 Identities=21% Similarity=0.243 Sum_probs=73.0
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|++.|||..|. ++.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~----g~~ 117 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELD----GRR 117 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 345568999999999999999999999999999999987753 369999999999999999999999998 999
Q ss_pred eeeecCCCC
Q 024276 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|.++...
T Consensus 118 l~V~~a~~~ 126 (129)
T 2kxn_B 118 IRVDFSITK 126 (129)
T ss_dssp CEESCCSSS
T ss_pred EEEEEecCC
Confidence 999998654
No 245
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=1.5e-16 Score=119.93 Aligned_cols=77 Identities=18% Similarity=0.298 Sum_probs=70.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCCcccC---CceEEEEe
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GCRLRVEL 79 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~~l~v~~ 79 (270)
+.++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+. +++|.|.+
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ 173 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKF 173 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEe
Confidence 678999999999999999999999999999999965 4667899999999999999999999998776 49999998
Q ss_pred cC
Q 024276 80 AH 81 (270)
Q Consensus 80 ~~ 81 (270)
+.
T Consensus 174 ad 175 (175)
T 3nmr_A 174 AD 175 (175)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 246
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.2e-16 Score=107.47 Aligned_cols=81 Identities=20% Similarity=0.239 Sum_probs=72.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.|.
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 85 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 85 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 3568999999999999999999999999999999987743 369999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024276 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 86 V~~a~~~~~ 94 (102)
T 2cqb_A 86 VNLAKPMRI 94 (102)
T ss_dssp EEECCCCCC
T ss_pred EEeCCCCCC
Confidence 999875443
No 247
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=8.4e-16 Score=104.74 Aligned_cols=79 Identities=18% Similarity=0.254 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+..+|||+|||..+++++|+++|+.||.|..+.+..+ .+||||+|.+.++|.+|++.|||..+. ++.|.|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~--kg~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 85 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD--KGFGFIRLETRTLAEIAKVELDNMPLR----GKQLRVRF 85 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT--TTEEEEECSSSHHHHHHHHHHTTCCBT----TBCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC--CCEEEEEECCHHHHHHHHHHhCCCEeC----CceEEEEE
Confidence 345689999999999999999999999999999999865 479999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024276 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 86 a~~~~ 90 (99)
T 2cpj_A 86 ACHSA 90 (99)
T ss_dssp SSCCS
T ss_pred cCCCC
Confidence 87543
No 248
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.6e-16 Score=105.89 Aligned_cols=79 Identities=20% Similarity=0.391 Sum_probs=71.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC-------CcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-------GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-------~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 79 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVD----GHK 79 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEET----TEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeC----CeE
Confidence 457999999999999999999999999999999987654 269999999999999999999999998 999
Q ss_pred eeeecCCCCC
Q 024276 196 ITVKRYDRSP 205 (270)
Q Consensus 196 i~v~~~~~~~ 205 (270)
|.|..+....
T Consensus 80 l~V~~a~~~~ 89 (98)
T 2cpf_A 80 LEVRISERAT 89 (98)
T ss_dssp CEEECSSCSS
T ss_pred EEEEEccCCC
Confidence 9999987533
No 249
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=5.3e-16 Score=103.83 Aligned_cols=77 Identities=23% Similarity=0.419 Sum_probs=70.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+ ||||+|.+.++|..|++.|||..+. ++.|.|..+
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 78 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD----YAFVHMEKEADAKAAIAQLNGKEVK----GKRINVELS 78 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS----CEEEEESCHHHHHHHHHHHTTCEET----TEECEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC----EEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEEEC
Confidence 35589999999999999999999999999999999864 9999999999999999999999998 999999999
Q ss_pred CCCCC
Q 024276 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
.....
T Consensus 79 ~~~~~ 83 (90)
T 2dnp_A 79 TKGQK 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 75433
No 250
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-15 Score=104.62 Aligned_cols=81 Identities=20% Similarity=0.209 Sum_probs=72.6
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhh-cCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCcc-ccCcccccce
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRK-AGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTE-FRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~-~~~~~~~~~i 196 (270)
.+..+|||+|||..+++++|+++|.. ||.|..+.++.+..+ |||||+|.+.++|..|++.|+|.. +. ++.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~----g~~l 82 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLG----SKPV 82 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSS----SSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccC----CEeE
Confidence 45689999999999999999999999 999999999988632 599999999999999999999999 88 8999
Q ss_pred eeecCCCCCC
Q 024276 197 TVKRYDRSPS 206 (270)
Q Consensus 197 ~v~~~~~~~~ 206 (270)
.|..+.....
T Consensus 83 ~v~~a~~~~~ 92 (104)
T 2dhg_A 83 RLSVAIPKAS 92 (104)
T ss_dssp CCCBCCCCCS
T ss_pred EEEEccCCCc
Confidence 9999865443
No 251
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.67 E-value=1.2e-15 Score=104.82 Aligned_cols=76 Identities=11% Similarity=0.202 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
+..+|||+|||..+++++|+++|..||.|..+.++. +||||+|.+.++|.+|++.|||..+. ++.|.|.++.
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~----~~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a~ 81 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLK----DYAFIHFDERDGAVKAMEEMNGKDLE----GENIEIVFAK 81 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECS----SCEEEEESSHHHHHHHHHHHTTEEET----TEEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC----CEEEEEeCCHHHHHHHHHHHCCCccC----CCEEEEEEcC
Confidence 458999999999999999999999999999999885 49999999999999999999999998 9999999997
Q ss_pred CCCC
Q 024276 203 RSPS 206 (270)
Q Consensus 203 ~~~~ 206 (270)
....
T Consensus 82 ~~~~ 85 (103)
T 2dgu_A 82 PPDQ 85 (103)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 5443
No 252
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=8.5e-16 Score=103.25 Aligned_cols=77 Identities=26% Similarity=0.400 Sum_probs=70.6
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+ ||||+|.+.++|..|+..|||..+. ++.|.|..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~----~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~V~~ 78 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD----YAFVHMERAEDAVEAIRGLDNTEFQ----GKRMHVQL 78 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS----EEEEEESCHHHHHHHHHHHTTEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC----EEEEEECCHHHHHHHHHHhCCCeeC----CcEEEEEE
Confidence 345689999999999999999999999999999999864 9999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024276 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+....
T Consensus 79 a~~~~ 83 (92)
T 2dgt_A 79 STSRL 83 (92)
T ss_dssp SSCCC
T ss_pred ccCCC
Confidence 96543
No 253
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4e-16 Score=105.77 Aligned_cols=80 Identities=16% Similarity=0.215 Sum_probs=72.1
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEE-EEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
+..+|||+|||..+++++|+++|+.||.|..+ .++.+.. .|||||+|.+.++|..|++.|||..+. ++.|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 79 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLC----NRPIT 79 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEET----TEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEEC----CEEEE
Confidence 45899999999999999999999999999999 8888743 369999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024276 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|..+.....
T Consensus 80 v~~a~~~~~ 88 (96)
T 1x5t_A 80 VSYAFKKDS 88 (96)
T ss_dssp EEESCCCCC
T ss_pred EEEecccCC
Confidence 999875443
No 254
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=6.3e-16 Score=104.78 Aligned_cols=79 Identities=22% Similarity=0.336 Sum_probs=72.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEE-EEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.....+|||+|||+.+++++|+++|..||.|..+ .++.+..++.|||+|.+.++|..|+..|||..+. ++.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~ 87 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLE----NFTLKVA 87 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCS----SCBCEEE
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 3456899999999999999999999999999999 5888887778999999999999999999999998 9999999
Q ss_pred cCCC
Q 024276 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.+..
T Consensus 88 ~a~~ 91 (96)
T 2e44_A 88 YIPD 91 (96)
T ss_dssp ECCC
T ss_pred EcCc
Confidence 8864
No 255
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=8.2e-16 Score=106.71 Aligned_cols=79 Identities=18% Similarity=0.213 Sum_probs=72.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
...++|||+|||..+++++|+++|+.||.|..+.++.+ .|||||+|.+.++|..|+..|+|..+. +..|.|.++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~a 96 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE--KGYSFVRFSTHESAAHAIVSVNGTTIE----GHVVKCYWG 96 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT--TTEEEEEESSHHHHHHHHHHHTTCEET----TEECEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHcCCCEEC----CcEEEEEec
Confidence 45689999999999999999999999999999999887 479999999999999999999999998 999999998
Q ss_pred CCCCC
Q 024276 202 DRSPS 206 (270)
Q Consensus 202 ~~~~~ 206 (270)
+..+.
T Consensus 97 ~~~~~ 101 (109)
T 1x4g_A 97 KESPD 101 (109)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 75443
No 256
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.67 E-value=3.9e-16 Score=103.29 Aligned_cols=77 Identities=21% Similarity=0.272 Sum_probs=69.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|||..+. ++.|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 80 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRTIR 80 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEEC----CcEEE
Confidence 34589999999999999999999999999999999877433 59999999999999999999999998 99999
Q ss_pred eecCC
Q 024276 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|.+++
T Consensus 81 v~~ak 85 (85)
T 3mdf_A 81 VNLAK 85 (85)
T ss_dssp EEECC
T ss_pred EEEcC
Confidence 98763
No 257
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=4.4e-16 Score=108.42 Aligned_cols=81 Identities=15% Similarity=0.124 Sum_probs=73.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHH---HHhhhcCceeEEEEeeCCCC-------cEEEEEecChhhHHHHHHhcCCccccCc
Q 024276 121 RHSEYRVIVRGLPSSASWQDLK---DHMRKAGDVCFAEVSRDSEG-------TYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~---~~f~~~g~v~~~~~~~~~~~-------g~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
.....+|||+|||+.+++++|. ++|.+||.|..+.++.+... |||||+|.+.++|.+|++.|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~-- 89 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD-- 89 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET--
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC--
Confidence 3456899999999999999999 99999999999999877642 69999999999999999999999998
Q ss_pred ccccceeeecCCCCC
Q 024276 191 WARGRITVKRYDRSP 205 (270)
Q Consensus 191 ~~~~~i~v~~~~~~~ 205 (270)
++.|.|.++...+
T Consensus 90 --gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 90 --GRTLKASLGTTKY 102 (111)
T ss_dssp --TEEEEEESCCCCS
T ss_pred --CEEEEEEeccccc
Confidence 9999999987543
No 258
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.67 E-value=1.8e-15 Score=105.10 Aligned_cols=74 Identities=18% Similarity=0.244 Sum_probs=68.3
Q ss_pred CCcceEEEeCCCCC-CCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 122 HSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
....+|||+|||.. +++++|+++|+.||.|..+.+. .+||||+|.+.++|..|++.|||..+. +..|.|..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 96 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSVH----KGYAFVQYSNERHARAAVLGENGRVLA----GQTLDINM 96 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEEE----TTEEEEECSSSHHHHHHHHHHTTCEET----TEECCEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 34589999999999 9999999999999999999983 469999999999999999999999998 99999999
Q ss_pred CCC
Q 024276 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 97 a~~ 99 (110)
T 1wf1_A 97 AGE 99 (110)
T ss_dssp SCC
T ss_pred CCC
Confidence 864
No 259
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.3e-15 Score=105.54 Aligned_cols=81 Identities=7% Similarity=0.051 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCce----eEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.+..+|||+|||..+++++|.++|..||.| ..+.+......|||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 98 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLY----GKILV 98 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCS----SCBCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 456899999999999999999999999998 6777776666689999999999999999999999998 99999
Q ss_pred eecCCCCCC
Q 024276 198 VKRYDRSPS 206 (270)
Q Consensus 198 v~~~~~~~~ 206 (270)
|.++.....
T Consensus 99 v~~a~~~~~ 107 (115)
T 2cpx_A 99 IEFGKNKKQ 107 (115)
T ss_dssp EEECCCCSC
T ss_pred EEEccCCCC
Confidence 999975444
No 260
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.66 E-value=7.2e-16 Score=101.54 Aligned_cols=76 Identities=14% Similarity=0.292 Sum_probs=70.1
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. ++.|.|..
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~~ 77 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLN----GRPLRINW 77 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEET----TEECEEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeC----CcEEEEEe
Confidence 68999999999999999999999999999999987543 59999999999999999999999998 99999998
Q ss_pred CCCC
Q 024276 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
+...
T Consensus 78 a~~~ 81 (83)
T 3md1_A 78 AAKL 81 (83)
T ss_dssp CCCC
T ss_pred cCcC
Confidence 8643
No 261
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.66 E-value=1.1e-15 Score=102.70 Aligned_cols=79 Identities=25% Similarity=0.487 Sum_probs=71.0
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC--CcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
.+..+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.|.|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~----g~~l~v~ 81 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLS----GREIDVR 81 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBT----TBCCCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CcEEEEE
Confidence 3458999999999999999999999999999999987532 269999999999999999999999998 9999999
Q ss_pred cCCCC
Q 024276 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
.++..
T Consensus 82 ~a~~~ 86 (92)
T 2dgv_A 82 IDRNA 86 (92)
T ss_dssp ECSCC
T ss_pred EcCCC
Confidence 98643
No 262
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=1.4e-15 Score=104.81 Aligned_cols=80 Identities=16% Similarity=0.259 Sum_probs=72.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|.+|+.. ++..|. ++.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~----g~~ 86 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD----GRN 86 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC----CEE
Confidence 3456689999999999999999999999999999999988654 5999999999999999999 999998 999
Q ss_pred eeeecCCCC
Q 024276 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|..+...
T Consensus 87 l~V~~a~~~ 95 (105)
T 2dh8_A 87 IDPKPCTPR 95 (105)
T ss_dssp EBCCCSCCS
T ss_pred EEEEEccCC
Confidence 999988643
No 263
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=2.2e-15 Score=102.67 Aligned_cols=77 Identities=23% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhc--CceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKA--GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
......+|||+|||..+++++|+++|+.| |.|..+.+.. +||||+|.+.++|..|+..|||..+. ++.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~----g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 82 (99)
T 2cpd_A 11 TMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR----DYAFVHFSNREDAVEAMKALNGKVLD----GSPIE 82 (99)
T ss_dssp CSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS----SEEEEEESSHHHHHHHHHHHSSEEET----TEEEE
T ss_pred ccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC----CeEEEEeCCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 33456899999999999999999999999 9999988764 59999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024276 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|.+++..
T Consensus 83 v~~a~~~ 89 (99)
T 2cpd_A 83 VTLAKPV 89 (99)
T ss_dssp EECCCCC
T ss_pred EEECCCC
Confidence 9998643
No 264
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.66 E-value=4.6e-16 Score=107.62 Aligned_cols=78 Identities=17% Similarity=0.259 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|||..+++++|+++|+.||.|..+.+. .|||||+|.+.++|..|+..|||..+. ++.|.|.+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~----kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~ 99 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL----NGFAFVEFEEAESAAKAIEEVHGKSFA----NQPLEVVY 99 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE----TTEEEEECSSHHHHHHHHHHHTTCEET----TEECEEES
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE----CCEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 3456899999999999999999999999999999988 479999999999999999999999998 99999999
Q ss_pred CCCCCC
Q 024276 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
++..+.
T Consensus 100 a~~~~~ 105 (108)
T 2jvo_A 100 SKLPAK 105 (108)
T ss_dssp CSCCC-
T ss_pred ecCCCC
Confidence 876544
No 265
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.66 E-value=1.6e-15 Score=106.83 Aligned_cols=79 Identities=22% Similarity=0.343 Sum_probs=70.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVG----TKR 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEET----TEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 445678999999999999999999999999999999987754 369999999999999999999999998 899
Q ss_pred eeeecCC
Q 024276 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|++++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9988763
No 266
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.66 E-value=3.4e-16 Score=117.05 Aligned_cols=76 Identities=30% Similarity=0.576 Sum_probs=69.3
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec---CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCce--EEEEe
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI---PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR--LRVEL 79 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~--l~v~~ 79 (270)
+.++|||+|||..+++++|+++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..|.|+. |.|.+
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~ 166 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKF 166 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccceEEEe
Confidence 568999999999999999999999999999999954 4567899999999999999999999999999964 88877
Q ss_pred c
Q 024276 80 A 80 (270)
Q Consensus 80 ~ 80 (270)
|
T Consensus 167 A 167 (167)
T 1fxl_A 167 A 167 (167)
T ss_dssp C
T ss_pred C
Confidence 5
No 267
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.66 E-value=5.5e-16 Score=105.04 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=70.9
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|.++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.|.|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~ 77 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLG----SRFLKCG 77 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEET----TEECEEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEE
Confidence 47999999999999999999999999999999988754 369999999999999999999999998 9999999
Q ss_pred cCCCC
Q 024276 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
.+...
T Consensus 78 ~a~~~ 82 (96)
T 2x1f_A 78 YSSNS 82 (96)
T ss_dssp ECSCS
T ss_pred EcCCC
Confidence 98643
No 268
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=9.1e-16 Score=101.53 Aligned_cols=75 Identities=17% Similarity=0.249 Sum_probs=68.5
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhc-CCccccCcccccceeeec
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL-DDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l-~g~~~~~~~~~~~i~v~~ 200 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+ .|||||+|.+.++|..|+..| +|..+. ++.|.|.+
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~--kg~afV~f~~~~~A~~a~~~l~~~~~~~----g~~l~v~~ 83 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR--QQCAFIQFATRQAAEVAAEKSFNKLIVN----GRRLNVKW 83 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHTTTTTCEET----TEECCEEE
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC--CCEEEEEECCHHHHHHHHHHhcCCeeEC----CCEEEEEe
Confidence 45689999999999999999999999999999999875 369999999999999999999 999988 89999887
Q ss_pred CC
Q 024276 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
++
T Consensus 84 ak 85 (85)
T 2ytc_A 84 GR 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 63
No 269
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1e-15 Score=105.73 Aligned_cols=79 Identities=18% Similarity=0.298 Sum_probs=72.3
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.....+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. ++.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLM----GQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSS----SSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEEC----CcEE
Confidence 345689999999999999999999999999999999988653 69999999999999999999999998 9999
Q ss_pred eeecCCC
Q 024276 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 96 ~V~~a~~ 102 (106)
T 1p27_B 96 SVDWCFV 102 (106)
T ss_dssp EEEESEE
T ss_pred EEEeecC
Confidence 9998864
No 270
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.66 E-value=4.4e-16 Score=126.56 Aligned_cols=76 Identities=21% Similarity=0.381 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC-CceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.+..+. +|||||+|.+.++|.+|+..|||..|+ |+.|.|.+++
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 367899999999999999999999999999999997543 589999999999999999999999999 9999999985
No 271
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.2e-15 Score=106.59 Aligned_cols=82 Identities=24% Similarity=0.423 Sum_probs=73.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCcee--------EEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCcccc
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--------FAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--------~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.....+|||+|||..+++++|+++|..||.|. .+.++.+.. .|||||+|.+.++|..|++.|||..+.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 91 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQ 91 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEET
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCccC
Confidence 34568999999999999999999999999998 688888744 369999999999999999999999998
Q ss_pred CcccccceeeecCCCCCC
Q 024276 189 NPWARGRITVKRYDRSPS 206 (270)
Q Consensus 189 ~~~~~~~i~v~~~~~~~~ 206 (270)
++.|.|..+.....
T Consensus 92 ----g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 92 ----GSKLKVSLARKKPP 105 (113)
T ss_dssp ----TEECEEECSSCCCC
T ss_pred ----CCEEEEEECCCCCC
Confidence 99999999875444
No 272
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.66 E-value=1.5e-15 Score=103.43 Aligned_cols=80 Identities=23% Similarity=0.311 Sum_probs=71.8
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeE--------EEEeeCCCC----cEEEEEecChhhHHHHHHhcCCcc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
.+.....+|||+|||..+++++|+++|+.||.|.. +.++.+..+ |||||+|.+.++|..|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34456689999999999999999999999999999 999888653 599999999999999999999999
Q ss_pred ccCcccccceeeecCC
Q 024276 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
+. ++.|.|..++
T Consensus 88 ~~----g~~l~V~~A~ 99 (99)
T 2la6_A 88 FS----GNPIKVSFAT 99 (99)
T ss_dssp SS----SSBCEEEECC
T ss_pred eC----CcEEEEEecC
Confidence 98 8999998763
No 273
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.65 E-value=1.7e-16 Score=106.27 Aligned_cols=76 Identities=14% Similarity=0.296 Sum_probs=67.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcC-ceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcC-CccccCcccccceee
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAG-DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLD-DTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g-~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~-g~~~~~~~~~~~i~v 198 (270)
.+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|.+|++.++ +..+. |+.|.|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~----gr~i~V 77 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNIL----GQKVSM 77 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEET----TEEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEEC----CEEEEE
Confidence 6899999999999999999999999 7999999877543 699999999999999999874 55677 999999
Q ss_pred ecCCCC
Q 024276 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
.++...
T Consensus 78 ~~a~~~ 83 (91)
T 2lxi_A 78 HYSDPK 83 (91)
T ss_dssp ECCCSC
T ss_pred EEcCCC
Confidence 998643
No 274
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.1e-15 Score=105.83 Aligned_cols=80 Identities=19% Similarity=0.201 Sum_probs=71.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.......+|||+|||..+++++|+++|+.||.|..+.++.+.. .+||||+|.+.++|.+|++.|++ .+. ++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~----g~ 86 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IID----GR 86 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EET----TE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCC----CE
Confidence 3445668999999999999999999999999999999988754 36999999999999999999998 777 99
Q ss_pred ceeeecCCC
Q 024276 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.|.|..+..
T Consensus 87 ~l~V~~a~~ 95 (116)
T 2cqd_A 87 KANVNLAYL 95 (116)
T ss_dssp ECEEEESTT
T ss_pred EEEEEEccc
Confidence 999999863
No 275
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.65 E-value=4.3e-15 Score=102.75 Aligned_cols=80 Identities=20% Similarity=0.268 Sum_probs=72.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|+|..+. |+.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~----g~~ 97 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELA----GRP 97 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CEE
Confidence 3445689999999999999999999999999999999987653 59999999999999999999999998 999
Q ss_pred eeeecCCC
Q 024276 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|.|..+..
T Consensus 98 l~V~~a~~ 105 (108)
T 2jrs_A 98 MKVGHVTE 105 (108)
T ss_dssp CEEECSCS
T ss_pred EEEEEccc
Confidence 99998864
No 276
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=5.3e-16 Score=105.57 Aligned_cols=79 Identities=11% Similarity=0.122 Sum_probs=69.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|++|++.|||..+. ++.|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~ 88 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVK 88 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeC----CeEEE
Confidence 34589999999999999999999999999987766665443 69999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024276 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..+..+
T Consensus 89 V~~a~~~ 95 (98)
T 2cqp_A 89 LVLGSGP 95 (98)
T ss_dssp EEESSCS
T ss_pred EEEcCCC
Confidence 9998643
No 277
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.65 E-value=5e-16 Score=106.57 Aligned_cols=80 Identities=25% Similarity=0.374 Sum_probs=69.5
Q ss_pred CCCCCeEEEcCC--CCCc--------cHHHHHHHhhcccceEEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhcCC
Q 024276 3 GRFSRTIYVGNL--PSDI--------REYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 3 ~~~s~~l~V~nl--~~~~--------t~~~L~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
+.|++.|.|.|+ |..+ .+++|+++|++||+|.+|.|..+ +.++|+|||+|.++++|.+|+..|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999998 3333 34799999999999999999654 25689999999999999999999999
Q ss_pred cccCCceEEEEecCC
Q 024276 68 YNFDGCRLRVELAHG 82 (270)
Q Consensus 68 ~~~~g~~l~v~~~~~ 82 (270)
..|+|++|.|.+...
T Consensus 82 ~~f~GR~i~v~~~~~ 96 (105)
T 3v4m_A 82 RKFANRVVVTKYCDP 96 (105)
T ss_dssp CEETTEECEEEEECH
T ss_pred CEeCCCEEEEEEeCH
Confidence 999999999998753
No 278
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=1.5e-15 Score=103.44 Aligned_cols=79 Identities=9% Similarity=0.131 Sum_probs=71.1
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCcee-EEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc-
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVC-FAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR- 195 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~-~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~- 195 (270)
.+..+|||+|||..+++++|+++|+.||.|. .+.++.+..+ |||||+|.+.++|+.|++.|||..+. ++.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~ 82 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP----GATP 82 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES----SCSS
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC----CCCc
Confidence 3458999999999999999999999999999 9999988644 59999999999999999999999998 777
Q ss_pred ---eeeecCCCC
Q 024276 196 ---ITVKRYDRS 204 (270)
Q Consensus 196 ---i~v~~~~~~ 204 (270)
|+|.++...
T Consensus 83 ~~~l~v~~a~~~ 94 (99)
T 2div_A 83 AKRFKLNYATYS 94 (99)
T ss_dssp CEECCEEETTCC
T ss_pred ceeEEEeecCCC
Confidence 899888643
No 279
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.65 E-value=2.7e-16 Score=105.80 Aligned_cols=81 Identities=11% Similarity=0.103 Sum_probs=68.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCc--eeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD--VCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~--v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.-.+|||+|||+.+|+++|+++|++||. +..+.++.++.+ |||||+|.+.++|.+|++.|||........|+.|
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i 87 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTI 87 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEE
Confidence 4479999999999999999999999995 668888887653 6999999999999999999999852222239999
Q ss_pred eeecCCC
Q 024276 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|++++.
T Consensus 88 ~V~~Aks 94 (95)
T 2lkz_A 88 GVDFAKS 94 (95)
T ss_dssp EEEECCC
T ss_pred EEEEccC
Confidence 9998864
No 280
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.65 E-value=1.2e-15 Score=111.81 Aligned_cols=79 Identities=19% Similarity=0.181 Sum_probs=70.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
....|||+||++.+++++|.++|++||.|..+.+......+||||+|++.++|..|++.|||..|.+ .++.|+|.+++
T Consensus 45 ~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g--~g~~L~V~~Ak 122 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDFSK 122 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSS--SCSCEEEEECS
T ss_pred ceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecC--CCcEEEEEEec
Confidence 3468999999999999999999999999999999876666799999999999999999999999961 14899999986
Q ss_pred C
Q 024276 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 123 ~ 123 (164)
T 1sjr_A 123 L 123 (164)
T ss_dssp S
T ss_pred C
Confidence 4
No 281
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.65 E-value=3.5e-15 Score=108.23 Aligned_cols=83 Identities=17% Similarity=0.249 Sum_probs=74.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. ++.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 113 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNIL----NKR 113 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECS----SCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeE
Confidence 3455689999999999999999999999999999999988653 59999999999999999999999998 999
Q ss_pred eeeecCCCCCC
Q 024276 196 ITVKRYDRSPS 206 (270)
Q Consensus 196 i~v~~~~~~~~ 206 (270)
|.|..++....
T Consensus 114 l~v~~a~~~~~ 124 (139)
T 1u6f_A 114 LKVALAASGHQ 124 (139)
T ss_dssp EEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999875433
No 282
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.64 E-value=1.1e-15 Score=105.76 Aligned_cols=78 Identities=15% Similarity=0.206 Sum_probs=71.0
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..+..+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. ++.|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~ 101 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLD----GRPMN 101 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeC----CcEEE
Confidence 355689999999999999999999999999999999988633 59999999999999999999999998 99999
Q ss_pred eecCC
Q 024276 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|..+.
T Consensus 102 V~~a~ 106 (107)
T 3ulh_A 102 IQLVT 106 (107)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 98764
No 283
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.5e-16 Score=105.13 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=66.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeC---CCCcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD---SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~---~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..+..+|||+|||..+++++|+++|..||.| .++.+ ...|||||+|.+.++|.+|++.|||..+. ++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~ 84 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIE----GRAIR 84 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEET----TEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeC----CeEEE
Confidence 3456899999999999999999999999988 33333 33479999999999999999999999998 99999
Q ss_pred eecCCCC
Q 024276 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|.++...
T Consensus 85 v~~a~~~ 91 (101)
T 2fc9_A 85 LELQGPR 91 (101)
T ss_dssp EEECSSC
T ss_pred EEEcCCC
Confidence 9998654
No 284
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.64 E-value=8.3e-16 Score=121.10 Aligned_cols=77 Identities=17% Similarity=0.280 Sum_probs=71.5
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC-CceEEEEecCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAHG 82 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~~ 82 (270)
++++|||+|||..+++++|+++|+.|| .|..|.+... .+|||||+|.+.++|.+|+..|||..|+ |++|.|.++.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecC
Confidence 579999999999999999999999999 9999999653 3789999999999999999999999999 99999999876
Q ss_pred C
Q 024276 83 G 83 (270)
Q Consensus 83 ~ 83 (270)
.
T Consensus 228 ~ 228 (229)
T 2adc_A 228 T 228 (229)
T ss_dssp C
T ss_pred C
Confidence 4
No 285
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.6e-16 Score=120.41 Aligned_cols=78 Identities=17% Similarity=0.273 Sum_probs=72.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhccc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC-CceEEEEecC
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYG-RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD-GCRLRVELAH 81 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~-g~~l~v~~~~ 81 (270)
.++++|||+|||..+++++|+++|+.|| .|..|.+..+. +|+|||+|.+.++|.+|+..|||..|+ |++|.|.++.
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~ 195 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSK 195 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEEC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeec
Confidence 3589999999999999999999999999 99999996543 799999999999999999999999999 9999999987
Q ss_pred CC
Q 024276 82 GG 83 (270)
Q Consensus 82 ~~ 83 (270)
+.
T Consensus 196 ~~ 197 (198)
T 1qm9_A 196 ST 197 (198)
T ss_dssp CC
T ss_pred cc
Confidence 54
No 286
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=4.9e-15 Score=103.64 Aligned_cols=82 Identities=20% Similarity=0.284 Sum_probs=71.7
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcc----cc
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPW----AR 193 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~----~~ 193 (270)
.....+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|..|++.|||..+.... .+
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~ 101 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPT 101 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCC
Confidence 345689999999999999999999999999999999988632 59999999999999999999999996333 47
Q ss_pred cceeeecCC
Q 024276 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|.+++
T Consensus 102 ~~l~v~~a~ 110 (114)
T 1x5o_A 102 EPLLCKFSG 110 (114)
T ss_dssp SCBEEEECC
T ss_pred CceeEEccC
Confidence 778888876
No 287
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.64 E-value=4.4e-16 Score=104.18 Aligned_cols=77 Identities=13% Similarity=0.155 Sum_probs=66.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcC--ceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. |+.|.|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~----gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSS----SCCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeC----CEEEEE
Confidence 5799999999999999999999999 9999999988644 59999999999999999999999998 999999
Q ss_pred ecCCCCC
Q 024276 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+...+
T Consensus 78 ~~~~~~~ 84 (90)
T 3p5t_L 78 TPSNKLE 84 (90)
T ss_dssp CCC----
T ss_pred EECCCCc
Confidence 9887543
No 288
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.1e-15 Score=105.91 Aligned_cols=79 Identities=22% Similarity=0.286 Sum_probs=71.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC--CcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE--GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~--~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
.....+|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|..|++.|||..+. |+.|.|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V 101 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVE----GRKIEV 101 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 34568999999999999999999999999999999987753 479999999999999999999999998 999999
Q ss_pred ecCCC
Q 024276 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..+..
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 98764
No 289
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.63 E-value=1.2e-15 Score=106.08 Aligned_cols=80 Identities=15% Similarity=0.217 Sum_probs=72.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
..+..+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+..|||..+. ++.|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 98 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIM----GQTI 98 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 445689999999999999999999999999999999877543 69999999999999999999999998 9999
Q ss_pred eeecCCCC
Q 024276 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
.|.++...
T Consensus 99 ~V~~a~~~ 106 (110)
T 1oo0_B 99 QVDWCFVK 106 (110)
T ss_dssp EEEESEES
T ss_pred EEEEcccC
Confidence 99988643
No 290
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.2e-15 Score=103.34 Aligned_cols=75 Identities=16% Similarity=0.291 Sum_probs=68.5
Q ss_pred CCcceEEEeCCCC-CCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 122 HSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+..+|||+|||. .+++++|+++|+.||.|..+.+. .|||||+|.+.++|..|+..|||..+. ++.|.|..
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~V~~ 79 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIECESQEMNF----GKKLILEV 79 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE----TTEEEEEESCHHHHHHHHHHHTCSSCB----TTTBCEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCeeC----CcEEEEEE
Confidence 4568999999998 99999999999999999999986 369999999999999999999999998 99999999
Q ss_pred CCCC
Q 024276 201 YDRS 204 (270)
Q Consensus 201 ~~~~ 204 (270)
+...
T Consensus 80 a~~~ 83 (96)
T 2kvi_A 80 SSSN 83 (96)
T ss_dssp EECC
T ss_pred cCcC
Confidence 8643
No 291
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.63 E-value=6.6e-16 Score=110.82 Aligned_cols=79 Identities=22% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCc---eeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
.......+|||+|||+.+++++|+++|+.||. |..+.++.+..+ |||||+|.+.++|.+|++ ||+..+.
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~---- 113 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMG---- 113 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESS----
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEEC----
Confidence 34456689999999999999999999999999 788999887654 599999999999999999 9999998
Q ss_pred ccceeeecCC
Q 024276 193 RGRITVKRYD 202 (270)
Q Consensus 193 ~~~i~v~~~~ 202 (270)
++.|.|..+.
T Consensus 114 gr~i~V~~a~ 123 (136)
T 2hgl_A 114 HRYIEVFKSH 123 (136)
T ss_dssp SSEEEEEECC
T ss_pred CEEEEEEECC
Confidence 9999998764
No 292
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.8e-15 Score=100.12 Aligned_cols=78 Identities=15% Similarity=0.197 Sum_probs=69.1
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|| .+++++|+++|+.||.|..+.+. ...|||||+|.+.++|.+|+..|||..+. ++.|.|.+
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~v~~ 83 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNI 83 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE--TTTTEEEEEESSHHHHHHHHHHTTTEEET----TEEEEEEC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec--CCCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEE
Confidence 345689999996 89999999999999999999885 34579999999999999999999999998 99999999
Q ss_pred CCCCCC
Q 024276 201 YDRSPS 206 (270)
Q Consensus 201 ~~~~~~ 206 (270)
+...+.
T Consensus 84 a~~~~~ 89 (97)
T 1x5p_A 84 ARKQPM 89 (97)
T ss_dssp CSSCCC
T ss_pred CCCCCC
Confidence 875443
No 293
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.63 E-value=8.9e-15 Score=102.80 Aligned_cols=76 Identities=8% Similarity=0.020 Sum_probs=66.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcE-EEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
...|||+||++.+++++|.++|++||.|..+.+... .|| |||+|.+.++|..|++.|||..|.+ ..+.|+|.+++
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~--~Gf~aFVef~~~~~A~~A~~~LnG~~i~g--~~~~l~V~~Ak 100 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR--NGIQAMVEFESVLCAQKAKAALNGADIYA--GCCTLKIEYAR 100 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES--SSEEEEEEESSHHHHHHHHHHHTTCCCBT--TBSEEEEECCS
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEecC--CCeEEEEEEec
Confidence 356789999999999999999999999999998764 376 9999999999999999999999971 02689999886
Q ss_pred C
Q 024276 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 101 ~ 101 (124)
T 2e5i_A 101 P 101 (124)
T ss_dssp C
T ss_pred C
Confidence 4
No 294
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.63 E-value=3.9e-16 Score=120.57 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=68.0
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccce--EEEEEecC-CCCCcEEEEEECCHHHHHHHHHhcCCcccCCc----eEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRI--LDIELKIP-PRPPCYCFVEFENARDAEDAIRGRDGYNFDGC----RLR 76 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v--~~~~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~----~l~ 76 (270)
.++++|||+|||+.+|+++|+++|++||.| ..+.+..+ +..+|+|||+|.+.++|.+||..|||..|.|. ++.
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~ 200 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYT 200 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEE
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceE
Confidence 357899999999999999999999999999 88988654 35569999999999999999999999999876 677
Q ss_pred EEec
Q 024276 77 VELA 80 (270)
Q Consensus 77 v~~~ 80 (270)
|+++
T Consensus 201 vk~~ 204 (205)
T 3tyt_A 201 LKLC 204 (205)
T ss_dssp CEEE
T ss_pred EEec
Confidence 7664
No 295
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.4e-16 Score=102.63 Aligned_cols=75 Identities=20% Similarity=0.292 Sum_probs=67.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.|||..+. ++.+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~~~~ 79 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQ----AQMAKQ 79 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCC----EESCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEe----eEEEee
Confidence 458999999999999999999999999999999988754 369999999999999999999999998 887776
Q ss_pred ecC
Q 024276 199 KRY 201 (270)
Q Consensus 199 ~~~ 201 (270)
...
T Consensus 80 ~~~ 82 (85)
T 1x4e_A 80 SGP 82 (85)
T ss_dssp SCC
T ss_pred cCC
Confidence 544
No 296
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.9e-15 Score=103.37 Aligned_cols=74 Identities=16% Similarity=0.280 Sum_probs=67.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|+. ++|..+. |+.|.|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~----gr~l~V~ 84 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYK----ETDLLIL 84 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCT----TTTCEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEEC----CEEEEEE
Confidence 458999999999999999999999999999999998754 3699999999999999999 8999998 8888887
Q ss_pred cC
Q 024276 200 RY 201 (270)
Q Consensus 200 ~~ 201 (270)
..
T Consensus 85 ~~ 86 (103)
T 1s79_A 85 FK 86 (103)
T ss_dssp EH
T ss_pred Ec
Confidence 54
No 297
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.3e-15 Score=103.46 Aligned_cols=79 Identities=18% Similarity=0.187 Sum_probs=68.8
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeE-EEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF-AEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~-~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||+.+++++|+++|..||.|.. +.++.+.. .|||||+|.+.++|.+|+.. ++..+. ++.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~----gr~ 85 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIG----HRY 85 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSS----SSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhC----CcE
Confidence 3445689999999999999999999999999987 77776633 36999999999999999998 999998 889
Q ss_pred eeeecCCC
Q 024276 196 ITVKRYDR 203 (270)
Q Consensus 196 i~v~~~~~ 203 (270)
|.|..+..
T Consensus 86 i~v~~~~~ 93 (104)
T 1wg5_A 86 IEIFKSSR 93 (104)
T ss_dssp CEEEEECT
T ss_pred EEEEECCH
Confidence 99987753
No 298
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=5.3e-15 Score=100.10 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=66.0
Q ss_pred CCCCeEEEcCCC-------CCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEE
Q 024276 4 RFSRTIYVGNLP-------SDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLR 76 (270)
Q Consensus 4 ~~s~~l~V~nl~-------~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~ 76 (270)
.....|.|...+ ..+++++|+++|++||+|.+|.|+ +.++|||||+|.+.++|..|+..+++ +.|++|.
T Consensus 8 ~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~ 83 (100)
T 2d9o_A 8 QGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLK 83 (100)
T ss_dssp CSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCE
T ss_pred CccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEE
Confidence 345678888765 458999999999999999999997 46799999999999999999997554 6799999
Q ss_pred EEecCCCC
Q 024276 77 VELAHGGS 84 (270)
Q Consensus 77 v~~~~~~~ 84 (270)
|.++....
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99988663
No 299
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.2e-15 Score=102.19 Aligned_cols=77 Identities=17% Similarity=0.230 Sum_probs=67.4
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+|||+|||+.+++++|+++|+.||.+ .+.++.+..+ |||||+|.+.++|++|++ +|+..+. ++.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~i~ 85 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQ----HRYVE 85 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSS----SSCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeEC----CcEEE
Confidence 3456899999999999999999999999954 8999888643 599999999999999994 7999998 88999
Q ss_pred eecCCC
Q 024276 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|..+..
T Consensus 86 V~~~~~ 91 (102)
T 1wez_A 86 LFLNST 91 (102)
T ss_dssp EEEECC
T ss_pred EEECCC
Confidence 987753
No 300
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.63 E-value=2.7e-15 Score=105.12 Aligned_cols=77 Identities=21% Similarity=0.250 Sum_probs=70.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC-CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE-GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~-~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+..+|||+|||..+++++|.++|+.||.|..+.++.+.. .|||||+|.+.++|..|+..|||..+. ++.|.|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l~v~~ 81 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVS----NRYLVVLY 81 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSS----SCBCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEEC----CeEEEEEE
Confidence 4568999999999999999999999999999999987654 379999999999999999999999998 99999998
Q ss_pred CC
Q 024276 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
+.
T Consensus 82 a~ 83 (115)
T 3lqv_A 82 YN 83 (115)
T ss_dssp CC
T ss_pred ec
Confidence 86
No 301
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.63 E-value=3e-15 Score=106.11 Aligned_cols=79 Identities=9% Similarity=0.162 Sum_probs=69.4
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHhhhcCceeEEEEeeC-CCCcEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.+..+|||+|||+.+++++|+ ++|+.||.|..|.+... ...|||||+|.+.++|..|+..|||..+. |+.|
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~----gr~l 102 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQ----GNPL 102 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCT----TSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeC----CCEE
Confidence 346799999999999999876 69999999999888653 34479999999999999999999999998 9999
Q ss_pred eeecCCCC
Q 024276 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
.|.++...
T Consensus 103 ~V~~a~~~ 110 (127)
T 2a3j_A 103 VITFSETP 110 (127)
T ss_dssp EEEECCCC
T ss_pred EEEEccCc
Confidence 99998643
No 302
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.63 E-value=3.7e-15 Score=110.25 Aligned_cols=78 Identities=17% Similarity=0.206 Sum_probs=72.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|..|.++.+..+ +||||+|.+.++|.+|++.||+..|. +..|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLD----DRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEET----TEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEE
Confidence 45689999999999999999999999999999999988654 59999999999999999999999998 99999
Q ss_pred eecCCC
Q 024276 198 VKRYDR 203 (270)
Q Consensus 198 v~~~~~ 203 (270)
|.++..
T Consensus 113 V~~a~~ 118 (156)
T 1h2v_Z 113 TDWDAG 118 (156)
T ss_dssp EEEESC
T ss_pred EEECCC
Confidence 999974
No 303
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=3.8e-15 Score=99.79 Aligned_cols=78 Identities=22% Similarity=0.337 Sum_probs=70.2
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
....+|||+|||..+++++|+++|+.| .|..+.++.+..+ |||||+|.+.++|.+|+. |||..+. ++.|.|
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~----gr~i~v 81 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMG----GRYIEV 81 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEET----TEEEEE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeC----CcEEEE
Confidence 455899999999999999999999999 9999999988432 599999999999999999 9999999 999999
Q ss_pred ecCCCCC
Q 024276 199 KRYDRSP 205 (270)
Q Consensus 199 ~~~~~~~ 205 (270)
..+...+
T Consensus 82 ~~a~~~~ 88 (91)
T 2dgw_A 82 FREKSGP 88 (91)
T ss_dssp EEESSCC
T ss_pred EECCcCC
Confidence 9886543
No 304
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.62 E-value=3e-15 Score=101.48 Aligned_cols=76 Identities=17% Similarity=0.317 Sum_probs=68.9
Q ss_pred CCCCcceEEEeCCCC-CCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 120 SRHSEYRVIVRGLPS-SASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+..+|||+|||. .+++++|+++|+.||.|..+.+. .|||||+|.+.++|..|+..|||..+. |+.|.|
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~----~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V 89 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK----NAFGFIQFDNPQSVRDAIEXESQEMNF----GKKLIL 89 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC----SSEEEEEESSHHHHHHHHHHHTTSEET----TEECEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe----CCEEEEEECCHHHHHHHHHHcCCCEEC----CEEEEE
Confidence 344568999999998 99999999999999999999985 469999999999999999999999998 999999
Q ss_pred ecCCC
Q 024276 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..++.
T Consensus 90 ~~a~~ 94 (97)
T 2xnq_A 90 EVSSS 94 (97)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 98854
No 305
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.62 E-value=1e-15 Score=104.44 Aligned_cols=75 Identities=20% Similarity=0.268 Sum_probs=69.4
Q ss_pred cceEEEeCCCC------CCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccc
Q 024276 124 EYRVIVRGLPS------SASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 124 ~~~l~v~nl~~------~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
.++|||+|||. .+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|.+|++.|||..+. +
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~----g 81 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLD----L 81 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSS----S
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccC----C
Confidence 57999999999 9999999999999999999999988763 69999999999999999999999998 8
Q ss_pred -cceeeecCC
Q 024276 194 -GRITVKRYD 202 (270)
Q Consensus 194 -~~i~v~~~~ 202 (270)
+.|.|..+.
T Consensus 82 ~r~l~V~~a~ 91 (100)
T 3ns6_A 82 KHRLFLYTMK 91 (100)
T ss_dssp SCBCEEEESH
T ss_pred CeEEEEEECc
Confidence 899988764
No 306
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=106.96 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=70.6
Q ss_pred CCCCCcceEEEeCCCCCCCHHHHHHHhhhcCc---eeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccc
Q 024276 119 ISRHSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 119 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
.......+|||+|||+.+++++|+++|+.||. |..+.++.+..+ |||||+|.+.++|.+|++ +|+..|.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~---- 86 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG---- 86 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET----
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC----
Confidence 33455689999999999999999999999999 889999887654 599999999999999999 9999998
Q ss_pred ccceeeecCC
Q 024276 193 RGRITVKRYD 202 (270)
Q Consensus 193 ~~~i~v~~~~ 202 (270)
++.|.|..+.
T Consensus 87 gr~i~V~~a~ 96 (118)
T 2db1_A 87 HRYIEVFKSH 96 (118)
T ss_dssp TEEEEEEEEC
T ss_pred CeEEEEEECC
Confidence 9999998775
No 307
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.62 E-value=1.6e-14 Score=102.62 Aligned_cols=80 Identities=14% Similarity=0.155 Sum_probs=72.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
......+|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|..|+..|||..+. ++.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESS----SCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEEC----CcEE
Confidence 345668999999999999999999999999999999988762 369999999999999999999999998 9999
Q ss_pred eeecCCC
Q 024276 197 TVKRYDR 203 (270)
Q Consensus 197 ~v~~~~~ 203 (270)
.|..+..
T Consensus 107 ~V~~a~~ 113 (124)
T 2kt5_A 107 DIQLVAS 113 (124)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9998864
No 308
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.62 E-value=4.5e-15 Score=107.76 Aligned_cols=78 Identities=22% Similarity=0.274 Sum_probs=69.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|++.|||..+. ++.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELF----GRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEET----TEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEEC----CEE
Confidence 344578999999999999999999999999999999987743 369999999999999999999999998 899
Q ss_pred eeeecC
Q 024276 196 ITVKRY 201 (270)
Q Consensus 196 i~v~~~ 201 (270)
|.|..+
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 988764
No 309
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.62 E-value=3.6e-16 Score=112.52 Aligned_cols=78 Identities=15% Similarity=0.186 Sum_probs=67.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
.....+|||+|||+.+++++|+++|+.|| |+.+.|+.+.. .|||||+|.+.++|++|+ .+|+..+. ++.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~----gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQ----HRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSS----SCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEEC----CEEEE
Confidence 34568999999999999999999999999 67899987765 369999999999999999 79999998 89999
Q ss_pred eecCCCC
Q 024276 198 VKRYDRS 204 (270)
Q Consensus 198 v~~~~~~ 204 (270)
|..+...
T Consensus 117 V~~a~~~ 123 (139)
T 2hgn_A 117 LFLNSTT 123 (139)
T ss_dssp CEECCCS
T ss_pred EEECCCC
Confidence 9887643
No 310
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=3e-15 Score=102.38 Aligned_cols=75 Identities=15% Similarity=0.104 Sum_probs=68.7
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
....+|||+|||..+++++|+++|+.||.|..+.+.. ..|||||+|.+.++|..|+..|||..+. ++.|.|.++
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a 98 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP--EKGCCFIKYDTHEQAAVCIVALANFPFQ----GRNLRTGWG 98 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET--TTTEEEEECSSHHHHHHHHHHHTTCEET----TEECCCCBC
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec--CCCEEEEEECCHHHHHHHHHHhCCCeEC----CeEEEEEec
Confidence 3457999999999999999999999999999999884 3479999999999999999999999998 999999887
Q ss_pred C
Q 024276 202 D 202 (270)
Q Consensus 202 ~ 202 (270)
+
T Consensus 99 ~ 99 (101)
T 2la4_A 99 K 99 (101)
T ss_dssp C
T ss_pred c
Confidence 5
No 311
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1.2e-15 Score=106.00 Aligned_cols=75 Identities=15% Similarity=0.311 Sum_probs=68.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
..++|||+|||..+++++|+++|+.||.|..+.++. ..+||||+|.+.++|..|+..|||..+. ++.|.|.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~--~~g~afV~f~~~~~A~~Ai~~l~g~~~~----g~~l~V~~a~ 82 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE--GGITAIVEFLEPLEARKAFRHLAYSKFH----HVPLYLEWAP 82 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS--SSSCEEEEESCHHHHHHHHHHHTTCBSS----SSBCEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC--CCCEEEEEeCCHHHHHHHHHHhCCCEEC----CeEEEEEECC
Confidence 457999999999999999999999999999998875 3469999999999999999999999998 9999999876
Q ss_pred C
Q 024276 203 R 203 (270)
Q Consensus 203 ~ 203 (270)
.
T Consensus 83 ~ 83 (111)
T 1whx_A 83 I 83 (111)
T ss_dssp T
T ss_pred C
Confidence 4
No 312
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=1.8e-14 Score=98.82 Aligned_cols=79 Identities=23% Similarity=0.301 Sum_probs=69.1
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
......+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|..|+.. +..+. ++.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~----g~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ--RHMID----GRW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS--CEEET----TEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc--CCeeC----CeE
Confidence 3445689999999999999999999999999999999988653 5999999999999999994 56676 899
Q ss_pred eeeecCCCC
Q 024276 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|.|..+...
T Consensus 85 l~v~~a~~~ 93 (103)
T 2cqg_A 85 CDCKLPNSK 93 (103)
T ss_dssp EEEECCCTT
T ss_pred EEEEecCCC
Confidence 999998643
No 313
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=107.21 Aligned_cols=78 Identities=21% Similarity=0.202 Sum_probs=66.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
+.....+|||+|||+.+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|.+|++ |||..|. ++.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~----gr~ 95 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMG----NRF 95 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCST----TSC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeEC----CcE
Confidence 345568999999999999999999999999998744433322 2699999999999999999 9999999 999
Q ss_pred eeeecCC
Q 024276 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..+.
T Consensus 96 i~V~~a~ 102 (124)
T 1wel_A 96 IQVHPIT 102 (124)
T ss_dssp BEEEEEC
T ss_pred EEEEECC
Confidence 9998775
No 314
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=1e-15 Score=103.56 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=67.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
+..+|||+|||..+++++|+++|..||.|..+.++.+... |||||+|.+.++|.+|++.|||..+. ++.|.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----gr~l~v 89 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIG----SRKVKL 89 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEE
Confidence 3589999999999999999999999999988777765443 59999999999999999999999998 999999
Q ss_pred ecCC
Q 024276 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 90 ~~a~ 93 (95)
T 2ek1_A 90 SGPS 93 (95)
T ss_dssp ECCC
T ss_pred Eecc
Confidence 8764
No 315
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2.5e-15 Score=103.62 Aligned_cols=80 Identities=19% Similarity=0.219 Sum_probs=68.6
Q ss_pred CCcceEEE--eCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccc-cCcccccceee
Q 024276 122 HSEYRVIV--RGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEF-RNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v--~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~-~~~~~~~~i~v 198 (270)
.++.+||| +||+..+++++|+++|++||.|..+.++.+ .|||||+|.+.++|.+|++.|||..+ .....+..+.|
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~--rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v 100 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN--KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYL 100 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT--CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEE
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEE
Confidence 45678999 779999999999999999999999888754 47999999999999999999999988 32223788888
Q ss_pred ecCCC
Q 024276 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
.++..
T Consensus 101 ~~a~~ 105 (114)
T 2cq2_A 101 NFVEK 105 (114)
T ss_dssp EEESC
T ss_pred Eeccc
Confidence 88864
No 316
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.9e-15 Score=100.18 Aligned_cols=78 Identities=17% Similarity=0.185 Sum_probs=67.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCc-eeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC-ccccCcccccceeeec
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD-TEFRNPWARGRITVKR 200 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g-~~~~~~~~~~~i~v~~ 200 (270)
...+|||+|||..+++++|+++|+.||. |..+.+.. .+||||+|.+.++|..|++.||| ..+. ++.|.|..
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~----g~~l~v~~ 79 (93)
T 2cqh_A 7 GMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLK---SGYAFVDYPDQNWAIRAIETLSGKVELH----GKIMEVDY 79 (93)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEE---TTEEEECCSCHHHHHHHHHHHTTTCEET----TEECEEEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcC---CCEEEEEECCHHHHHHHHHHccCCeeEC----CEEEEEEE
Confidence 4579999999999999999999999999 55555533 46999999999999999999999 8888 99999999
Q ss_pred CCCCCCC
Q 024276 201 YDRSPSR 207 (270)
Q Consensus 201 ~~~~~~r 207 (270)
+.....+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9754443
No 317
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=3.5e-15 Score=104.36 Aligned_cols=75 Identities=19% Similarity=0.218 Sum_probs=69.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|..||.|..+.++.+..+ |||||+|.+.++|.+|+ .|||..|. ++.|.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLL----GVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEET----TEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeC----CeEEEE
Confidence 4579999999999999999999999999999999877653 69999999999999999 99999998 999999
Q ss_pred ecCC
Q 024276 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 99 ~~a~ 102 (114)
T 2cq4_A 99 QASQ 102 (114)
T ss_dssp EEHH
T ss_pred EecC
Confidence 8875
No 318
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.60 E-value=6.4e-15 Score=105.62 Aligned_cols=77 Identities=10% Similarity=0.177 Sum_probs=69.8
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeE--EEEeeCCCC----cEEEEEecChhhHHHHHHhcCCc----cccCcc
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--AEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDT----EFRNPW 191 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~----~~~~~~ 191 (270)
....+|||+|||..+++++|+++|+.||.|.. +.++.+..+ |||||+|.+. +|.+|+..|||. .+.
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~--- 96 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID--- 96 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG---
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC---
Confidence 45679999999999999999999999999966 899888743 6999999999 999999999999 887
Q ss_pred cccceeeecCCC
Q 024276 192 ARGRITVKRYDR 203 (270)
Q Consensus 192 ~~~~i~v~~~~~ 203 (270)
++.|.|.++..
T Consensus 97 -gr~l~V~~a~~ 107 (131)
T 2m2b_A 97 -GKTINVEFAKG 107 (131)
T ss_dssp -GCCCCCEECCC
T ss_pred -CEEEEEEECCC
Confidence 99999999864
No 319
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.60 E-value=6.3e-15 Score=98.30 Aligned_cols=75 Identities=19% Similarity=0.333 Sum_probs=69.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|+ .|||..+. ++.|.|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~----g~~l~V~ 80 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFR----GRQIKVI 80 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEET----TEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEEC----CcEEEEE
Confidence 47999999999999999999999999999999988753 369999999999999999 99999998 9999999
Q ss_pred cCCC
Q 024276 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.++.
T Consensus 81 ~a~~ 84 (89)
T 3ucg_A 81 PKRT 84 (89)
T ss_dssp ETTT
T ss_pred EccC
Confidence 8864
No 320
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=6.6e-15 Score=96.43 Aligned_cols=70 Identities=17% Similarity=0.293 Sum_probs=62.6
Q ss_pred ceEEEeCCCCCCCHHH----HHHHhhhcC-ceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 125 YRVIVRGLPSSASWQD----LKDHMRKAG-DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
..|||.|||..+++++ |.++|+.|| +|.+| .+|+|||.|.+.++|..|++.|+|..+. ++.|+|.
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tgG~AfV~F~~~esA~~A~~~l~G~~l~----gr~i~v~ 79 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TGCSAILRFINQDSAERAQKRMENEDVF----GNRIIVS 79 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CTTCEEEEESSHHHHHHHHHHHTTCCSS----SSCCEEE
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ecCEEEEEECCHHHHHHHHHHhcCCccC----CceEEEE
Confidence 3499999999999988 558999995 99887 2379999999999999999999999999 9999999
Q ss_pred cCCCC
Q 024276 200 RYDRS 204 (270)
Q Consensus 200 ~~~~~ 204 (270)
+++..
T Consensus 80 ~A~~~ 84 (96)
T 2diu_A 80 FTPKN 84 (96)
T ss_dssp SSCCS
T ss_pred ecCCC
Confidence 99743
No 321
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.60 E-value=4.9e-15 Score=109.13 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcC--ceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+|||+|||..+++++|+++|+.|| .|..+.++.+..+ |||||+|.+.++|..|++.|||..|. |+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~----Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLN----GEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEET----TEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEEC----CeEe
Confidence 457999999999999999999999999 9999999988654 59999999999999999999999999 9999
Q ss_pred eeecCC
Q 024276 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 130 ~V~~a~ 135 (156)
T 3n9u_C 130 DVRPAT 135 (156)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999875
No 322
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.60 E-value=1.3e-14 Score=97.83 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=64.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCc-EEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGT-YGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g-~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
...+|||+|||..+++++|+++|..||.|..+ +.+..++ ||||+|.+.++|..|+. |||..+. ++.|.|..+
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~----g~~l~V~~a 79 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLG----GHRLRVRPR 79 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEET----TEECCCBCS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEEC----CEEEEEEEC
Confidence 34799999999999999999999999999987 4443333 99999999999999999 9999998 999999877
Q ss_pred CC
Q 024276 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
..
T Consensus 80 ~~ 81 (94)
T 2e5g_A 80 EQ 81 (94)
T ss_dssp CC
T ss_pred Cc
Confidence 53
No 323
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=6e-15 Score=101.42 Aligned_cols=78 Identities=28% Similarity=0.394 Sum_probs=71.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++.|||..+. ++.|.|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v 82 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFS----GRALRV 82 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCS----SSCBEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeC----CcEEEE
Confidence 4579999999999999999999999999999999987643 59999999999999999999999998 999999
Q ss_pred ecCCCC
Q 024276 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..+...
T Consensus 83 ~~a~~~ 88 (104)
T 1p1t_A 83 DNAASE 88 (104)
T ss_dssp EETTCT
T ss_pred EeCCCc
Confidence 998643
No 324
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.60 E-value=2.1e-15 Score=98.73 Aligned_cols=70 Identities=14% Similarity=0.254 Sum_probs=61.8
Q ss_pred ceEEEeCCCCCC------CHHHHHHHhhhcCceeEEEEeeC--CCCcEEEEEecChhhHHHHHHhcCCccccCccccc-c
Q 024276 125 YRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG-R 195 (270)
Q Consensus 125 ~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~-~ 195 (270)
++|||+|||..+ ++++|+++|+.||.|..+.++.. ...|||||+|.+.++|..|+..|||..+. ++ .
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~----g~~~ 77 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQHT 77 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCS----SSSC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccC----Ccee
Confidence 689999999999 67999999999999999988743 22379999999999999999999999998 77 6
Q ss_pred eee
Q 024276 196 ITV 198 (270)
Q Consensus 196 i~v 198 (270)
|.|
T Consensus 78 l~V 80 (81)
T 2krb_A 78 FRV 80 (81)
T ss_dssp CCC
T ss_pred EEe
Confidence 665
No 325
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.60 E-value=5.2e-15 Score=101.85 Aligned_cols=76 Identities=13% Similarity=0.254 Sum_probs=67.6
Q ss_pred CcceEEEeCCCCCC------CHHHHHHHhhhcCceeEEEEeeC--CCCcEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024276 123 SEYRVIVRGLPSSA------SWQDLKDHMRKAGDVCFAEVSRD--SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 123 ~~~~l~v~nl~~~~------~~~~l~~~f~~~g~v~~~~~~~~--~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
..++|||+|||..+ ++++|+++|+.||.|..+.++.. ...|||||+|.+.++|..|+..|||..+. |+
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~----g~ 89 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD----KQ 89 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS----TT
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC----CC
Confidence 35799999999999 78999999999999999988732 22379999999999999999999999998 88
Q ss_pred -ceeeecCC
Q 024276 195 -RITVKRYD 202 (270)
Q Consensus 195 -~i~v~~~~ 202 (270)
.|.|..+.
T Consensus 90 ~~l~V~~a~ 98 (105)
T 2nlw_A 90 HTFRVNLFT 98 (105)
T ss_dssp CEEEEECSC
T ss_pred ceEEEEEcc
Confidence 89998875
No 326
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=4.2e-15 Score=102.54 Aligned_cols=75 Identities=23% Similarity=0.290 Sum_probs=67.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
....+|||+|||+.+++++|+++|+.| .|..+.|+.+.. .|||||+|.+.++|.+|+ .+|+..+. ++.|.|
T Consensus 14 ~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~----gr~i~V 87 (109)
T 2dnn_A 14 PDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMI----QRYVEV 87 (109)
T ss_dssp HHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEET----TEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 345799999999999999999999999 899999987764 369999999999999999 69999998 899999
Q ss_pred ecCC
Q 024276 199 KRYD 202 (270)
Q Consensus 199 ~~~~ 202 (270)
..+.
T Consensus 88 ~~a~ 91 (109)
T 2dnn_A 88 SPAT 91 (109)
T ss_dssp EECC
T ss_pred EECC
Confidence 7775
No 327
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=7e-15 Score=104.44 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=69.5
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|+ .|||..+. ++.|.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~----g~~l~V 109 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFR----GRTIKV 109 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEET----TEECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeEC----CeEEEE
Confidence 3579999999999999999999999999999999887433 59999999999999999 89999998 999999
Q ss_pred ecCCC
Q 024276 199 KRYDR 203 (270)
Q Consensus 199 ~~~~~ 203 (270)
..++.
T Consensus 110 ~~a~~ 114 (124)
T 2jwn_A 110 LPKRT 114 (124)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99864
No 328
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.59 E-value=1e-14 Score=96.80 Aligned_cols=75 Identities=20% Similarity=0.321 Sum_probs=66.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+..+ |||||+|.+.++|..|++ +++..+. |+.|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~----g~~i~ 83 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLD----GRVID 83 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEEC----CEEEE
Confidence 45689999999999999999999999999999999988653 599999999999999996 4777777 88888
Q ss_pred eecC
Q 024276 198 VKRY 201 (270)
Q Consensus 198 v~~~ 201 (270)
|+.+
T Consensus 84 v~~A 87 (87)
T 3s7r_A 84 PKKA 87 (87)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 8753
No 329
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=3e-15 Score=104.66 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=69.2
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCce-eEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV-CFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v-~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.....+|||+|||+.+++++|+++|+.||.| ..+.++.+.. .|||||+|.+.++|.+|++. |+..|. ++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~----gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLN----GREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEET----TEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccC----CeEE
Confidence 3456899999999999999999999999999 8888887763 36999999999999999997 999998 9999
Q ss_pred eeecCC
Q 024276 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|..+.
T Consensus 87 ~v~~a~ 92 (114)
T 2cpy_A 87 FVHVVT 92 (114)
T ss_dssp EEEEEC
T ss_pred EEEECC
Confidence 998876
No 330
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.59 E-value=5e-15 Score=104.48 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=68.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcE-EEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTY-GVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~-afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
....|||+||++.+++++|.++|++||.|..+.+.... .|+ |||+|.+.++|..|++.|||..|.+ ..+.|+|+++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~-~gfqAFVef~~~~~A~~Ai~~LnG~~i~g--~~~~LrI~~a 103 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN-NQFQALLQYADPVSAQHAKLSLDGQNIYN--ACCTLRIDFS 103 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET-TEEEEEEEESCHHHHHHHHHHHTTCEEET--TEEEEEEEEC
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC-CCcEEEEEECCHHHHHHHHHHcCCCeecC--CCcEEEEEec
Confidence 34688899999999999999999999999999887754 456 9999999999999999999999982 1288999998
Q ss_pred CC
Q 024276 202 DR 203 (270)
Q Consensus 202 ~~ 203 (270)
+.
T Consensus 104 k~ 105 (130)
T 3zzy_A 104 KL 105 (130)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 331
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.59 E-value=3.6e-15 Score=122.64 Aligned_cols=77 Identities=14% Similarity=0.245 Sum_probs=67.2
Q ss_pred CCCCCCeEEEcC--CCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC---Cc--e
Q 024276 2 SGRFSRTIYVGN--LPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD---GC--R 74 (270)
Q Consensus 2 ~~~~s~~l~V~n--l~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~---g~--~ 74 (270)
++.++.+|||+| |+..+|+++|+++|++||+|..|.+.. .+|||||+|.+.++|++|++.|||..+. |+ +
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 357999999999 578899999999999999999987754 4899999999999999999999998883 44 6
Q ss_pred EEEEecC
Q 024276 75 LRVELAH 81 (270)
Q Consensus 75 l~v~~~~ 81 (270)
|.|.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777774
No 332
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.7e-14 Score=98.78 Aligned_cols=81 Identities=22% Similarity=0.355 Sum_probs=68.2
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
...+..+|||+|||..+++++|+++|+.|+ .+.++.+... |||||+|.+.++|.+|++.|||..|. ++.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~ 83 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEID----GNK 83 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEET----TEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeEC----CeE
Confidence 345668999999999999999999999875 4555555433 69999999999999999999999998 999
Q ss_pred eeeecCCCCCCC
Q 024276 196 ITVKRYDRSPSR 207 (270)
Q Consensus 196 i~v~~~~~~~~r 207 (270)
|.|.+++....+
T Consensus 84 l~V~~a~~~~~~ 95 (102)
T 2fc8_A 84 VTLDWAKPKGEG 95 (102)
T ss_dssp CEEEECCCCCSS
T ss_pred EEEEEecCCCCC
Confidence 999999754443
No 333
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.2e-14 Score=101.91 Aligned_cols=79 Identities=15% Similarity=0.225 Sum_probs=71.2
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|..||.|..+.++.+.. .|||||+|.+.++|..|+.. ++..|. ++.|.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~V 100 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSID----GRVVEP 100 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEET----TEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEEC----CEEEEE
Confidence 457999999999999999999999999999999998754 36999999999999999998 999998 999999
Q ss_pred ecCCCCCC
Q 024276 199 KRYDRSPS 206 (270)
Q Consensus 199 ~~~~~~~~ 206 (270)
..+.....
T Consensus 101 ~~a~~~~~ 108 (116)
T 1x4b_A 101 KRAVAREE 108 (116)
T ss_dssp ECCSSCCC
T ss_pred EECCCCcc
Confidence 99875443
No 334
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.58 E-value=2.9e-15 Score=102.19 Aligned_cols=78 Identities=17% Similarity=0.391 Sum_probs=67.5
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-----CCcEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-----EGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-----~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
.....++|||+|||..+++++|+++|+.|| |..+.++.+. ..|||||+|.+.++|..|+ .|+|..+. ++
T Consensus 15 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~----g~ 88 (100)
T 2j76_E 15 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLG----NR 88 (100)
T ss_dssp -----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBT----TB
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEEC----Ce
Confidence 344568999999999999999999999999 9999998775 2369999999999999999 89999998 99
Q ss_pred ceeeecCCC
Q 024276 195 RITVKRYDR 203 (270)
Q Consensus 195 ~i~v~~~~~ 203 (270)
.|.|..+..
T Consensus 89 ~l~V~~a~~ 97 (100)
T 2j76_E 89 RIRVDVADQ 97 (100)
T ss_dssp CCCCEECCC
T ss_pred EEEEEeccC
Confidence 999998864
No 335
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.58 E-value=4.6e-15 Score=96.13 Aligned_cols=72 Identities=18% Similarity=0.286 Sum_probs=65.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
++|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++.++ ..+. |+.|.|+.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~----g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELD----SKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCS----SCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccC----CEEEEEEe
Confidence 3799999999999999999999999999999988764 3699999999999999999999 8887 88888876
Q ss_pred C
Q 024276 201 Y 201 (270)
Q Consensus 201 ~ 201 (270)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 4
No 336
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.58 E-value=8.6e-16 Score=105.24 Aligned_cols=69 Identities=23% Similarity=0.403 Sum_probs=59.2
Q ss_pred cCCCCCccHHHHHHHh------------hcccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEE
Q 024276 12 GNLPSDIREYEVEDLF------------YKYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRV 77 (270)
Q Consensus 12 ~nl~~~~t~~~L~~~F------------~~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v 77 (270)
.|||..+++++|+++| ++||+|.+|.|..+ +.++|||||+|.++++|.+|+..|||..|+|++|.|
T Consensus 21 ~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v 100 (104)
T 1jmt_A 21 DGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHA 100 (104)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCE
T ss_pred CCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEE
Confidence 4455556777776666 99999999999653 567999999999999999999999999999999999
Q ss_pred Eec
Q 024276 78 ELA 80 (270)
Q Consensus 78 ~~~ 80 (270)
.++
T Consensus 101 ~~s 103 (104)
T 1jmt_A 101 ELS 103 (104)
T ss_dssp EEC
T ss_pred EEc
Confidence 986
No 337
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.58 E-value=4.5e-15 Score=95.68 Aligned_cols=71 Identities=18% Similarity=0.286 Sum_probs=64.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecC
Q 024276 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRY 201 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~ 201 (270)
+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++ |+|..+. ++.|.|..+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~----g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEIN----NKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSS----SCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEEC----CEEEEEEeC
Confidence 589999999999999999999999999999987764 3699999999999999998 9999998 888888753
No 338
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=5.1e-15 Score=100.44 Aligned_cols=79 Identities=14% Similarity=0.179 Sum_probs=70.1
Q ss_pred CCcceEEEeCCCCCCCHHHHH----HHhhhcCceeEEEEeeC-CCCcEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 122 HSEYRVIVRGLPSSASWQDLK----DHMRKAGDVCFAEVSRD-SEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~g~v~~~~~~~~-~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
.+..+|||+|||..+++++|+ ++|+.||.|..+.+... ...|||||+|.+.++|..|+..|||..+. ++.|
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~----g~~l 81 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFY----DKPM 81 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEET----TEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEEC----CcEE
Confidence 456899999999999999999 99999999999988742 22369999999999999999999999998 9999
Q ss_pred eeecCCCC
Q 024276 197 TVKRYDRS 204 (270)
Q Consensus 197 ~v~~~~~~ 204 (270)
.|.++...
T Consensus 82 ~v~~a~~~ 89 (97)
T 1nu4_A 82 RIQYAKTD 89 (97)
T ss_dssp EEEECSSC
T ss_pred EEEEccCC
Confidence 99998653
No 339
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.57 E-value=8.6e-15 Score=102.25 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=68.3
Q ss_pred CCCCeEEEcCCCCC-----ccHHHHHHHhhcccceEEEEEecC-------CCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 4 RFSRTIYVGNLPSD-----IREYEVEDLFYKYGRILDIELKIP-------PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 4 ~~s~~l~V~nl~~~-----~t~~~L~~~F~~~G~v~~~~~~~~-------~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.++++|+|.|+-.. -.+++|++.|++||+|.+|.|..+ +.++|+|||+|.++++|.+|+..|||..|+
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 47999999999422 236899999999999999999543 234699999999999999999999999999
Q ss_pred CceEEEEecCC
Q 024276 72 GCRLRVELAHG 82 (270)
Q Consensus 72 g~~l~v~~~~~ 82 (270)
|+.|.|.++..
T Consensus 98 GR~i~v~~~~~ 108 (118)
T 3ue2_A 98 GRKVVAEVYDQ 108 (118)
T ss_dssp TEECEEEEECH
T ss_pred CcEEEEEEcCh
Confidence 99999999753
No 340
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.57 E-value=5.5e-15 Score=100.07 Aligned_cols=78 Identities=8% Similarity=0.170 Sum_probs=67.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+..+|||+|||..+++++|+++|+.||.|..+ .......|||||+|.+.++|..|+..|+|..+. ++.|.|..
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~----g~~l~v~~ 87 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEID----GRSVSLYY 87 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEET----TEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEE
Confidence 3456899999999999999999999999998777 233333479999999999999999999999998 99999999
Q ss_pred CCC
Q 024276 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 88 a~~ 90 (96)
T 1fjc_A 88 TGE 90 (96)
T ss_dssp CSS
T ss_pred cCC
Confidence 854
No 341
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=3.2e-15 Score=100.00 Aligned_cols=74 Identities=27% Similarity=0.362 Sum_probs=67.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.+ |..|+..|||..+. |+.|.|..
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~----g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFM----GRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCS----SSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEEC----CeEEEEEE
Confidence 5899999999999999999999999999999987754 369999999999 99999999999998 99999998
Q ss_pred CCC
Q 024276 201 YDR 203 (270)
Q Consensus 201 ~~~ 203 (270)
+..
T Consensus 77 a~~ 79 (90)
T 2ki2_A 77 ANP 79 (90)
T ss_dssp C--
T ss_pred cCC
Confidence 864
No 342
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.57 E-value=9.7e-15 Score=103.06 Aligned_cols=77 Identities=18% Similarity=0.242 Sum_probs=65.7
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCcee--EEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCccccc
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVC--FAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARG 194 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~--~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~ 194 (270)
......+|||+|||+.+++++|+++|+.| .|. .|.++.+..+ |||||+|.+.++|.+|++. ++..|. ++
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~----gR 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIG----HR 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBT----TB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEEC----CE
Confidence 33456889999999999999999999999 666 8888877553 6999999999999999985 778888 88
Q ss_pred ceeeecCC
Q 024276 195 RITVKRYD 202 (270)
Q Consensus 195 ~i~v~~~~ 202 (270)
.|.|..+.
T Consensus 112 ~I~V~~a~ 119 (126)
T 2hgm_A 112 YIEVFKSS 119 (126)
T ss_dssp CCCCEEEC
T ss_pred EEEEEECC
Confidence 88887654
No 343
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.57 E-value=1.7e-14 Score=99.97 Aligned_cols=79 Identities=18% Similarity=0.239 Sum_probs=68.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
....+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|.+|+..+ +..+. |+.|.
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~----g~~l~ 97 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELD----SKTID 97 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEET----TEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCC----CEEEE
Confidence 4568999999999999999999999999999999988764 369999999999999999987 47777 99999
Q ss_pred eecCCCCC
Q 024276 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|..+....
T Consensus 98 V~~a~~~~ 105 (109)
T 2rs2_A 98 PKVAFPRR 105 (109)
T ss_dssp EEECCCCC
T ss_pred EEEccCCC
Confidence 99886433
No 344
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=3.6e-14 Score=98.38 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=68.9
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCc-eeEEEEe-eCCC----CcEEEEEecChhhHHHHHHhcC--CccccCccccc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGD-VCFAEVS-RDSE----GTYGVVDYTNPEDMKYAIRKLD--DTEFRNPWARG 194 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~-v~~~~~~-~~~~----~g~afv~f~~~~~a~~a~~~l~--g~~~~~~~~~~ 194 (270)
+.++|||+|||..+++++|+++|..||. |..+.++ .+.. .|||||+|.+.++|..|++.|+ +..+. ++
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~----g~ 82 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLW----GH 82 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBT----TB
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceec----CC
Confidence 4589999999999999999999999998 9999887 4433 4699999999999999999996 57888 89
Q ss_pred ceeeecCCCC
Q 024276 195 RITVKRYDRS 204 (270)
Q Consensus 195 ~i~v~~~~~~ 204 (270)
.|.|.++...
T Consensus 83 ~l~V~~a~~~ 92 (109)
T 2dis_A 83 QIAVDWAEPE 92 (109)
T ss_dssp CCEEEESCSS
T ss_pred eEEEEEcCCC
Confidence 9999998643
No 345
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.56 E-value=6.3e-15 Score=101.79 Aligned_cols=76 Identities=11% Similarity=0.159 Sum_probs=68.4
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCc---eeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGD---VCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~---v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
....+|||+|||+.+++++|+++|..||. |..+.++.+.. .|||||+|.+.++|..|+. +|+..+. ++.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~----gr~ 83 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG----QRY 83 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS----SSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC----CeE
Confidence 45689999999999999999999999998 88899987765 3699999999999999999 9999998 889
Q ss_pred eeeecCC
Q 024276 196 ITVKRYD 202 (270)
Q Consensus 196 i~v~~~~ 202 (270)
|.|..+.
T Consensus 84 i~V~~a~ 90 (107)
T 2lmi_A 84 VEVYEIN 90 (107)
T ss_dssp CCCEECC
T ss_pred EEEEECC
Confidence 9988775
No 346
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.55 E-value=1.7e-14 Score=95.75 Aligned_cols=71 Identities=17% Similarity=0.396 Sum_probs=64.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhc----C-------ceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKA----G-------DVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
...+|||+|||..+++++|+++|+.| | .|..+.+..+ .|||||+|.+.++|..|+ .|||..+.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~--kg~afV~f~~~~~a~~A~-~l~g~~~~--- 78 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD--KNFAFLEFRSVDETTQAM-AFDGIIFQ--- 78 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS--SSEEEEEESSHHHHHHHG-GGTTCEET---
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC--CcEEEEEcCCHHHHHHHH-hcCCCEEC---
Confidence 45899999999999999999999999 8 8999988866 479999999999999999 99999998
Q ss_pred cccceeeec
Q 024276 192 ARGRITVKR 200 (270)
Q Consensus 192 ~~~~i~v~~ 200 (270)
++.|.|+.
T Consensus 79 -g~~l~V~r 86 (87)
T 2hzc_A 79 -GQSLKIRR 86 (87)
T ss_dssp -TEECEEEC
T ss_pred -CeEEEEeC
Confidence 88888763
No 347
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.55 E-value=1.7e-14 Score=113.14 Aligned_cols=76 Identities=13% Similarity=0.162 Sum_probs=69.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcC--ceeEEEEeeCCCC----cEEEEEecChhhHHHHHHhcCCccccCcccccce
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAG--DVCFAEVSRDSEG----TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRI 196 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g--~v~~~~~~~~~~~----g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i 196 (270)
...+|||+||+..+++++|+++|..|| .|..|.|+.+..+ |||||+|.+.++|.+||+.|||..|. ++.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~----Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELH----GQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBT----TBCC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeEC----CEEe
Confidence 457899999999999999999999999 9999999998654 59999999999999999999999999 9999
Q ss_pred eeecCC
Q 024276 197 TVKRYD 202 (270)
Q Consensus 197 ~v~~~~ 202 (270)
.|.++.
T Consensus 143 ~V~~a~ 148 (229)
T 3q2s_C 143 VVTPVN 148 (229)
T ss_dssp EEEECC
T ss_pred EEEECC
Confidence 999875
No 348
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=2.7e-14 Score=97.60 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=65.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEee----CCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSR----DSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITV 198 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~----~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v 198 (270)
...+|||+|||..+++++|+++|..||.|.. .++. ....|||||+|.+.++|.+|++ |||..+. ++.|.|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~----g~~l~V 89 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVF----GNEIKL 89 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBT----TBCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEEC----CcEEEE
Confidence 4689999999999999999999999998766 3322 2345799999999999999999 9999998 999999
Q ss_pred ecCCCC
Q 024276 199 KRYDRS 204 (270)
Q Consensus 199 ~~~~~~ 204 (270)
..+...
T Consensus 90 ~~a~~~ 95 (101)
T 1fj7_A 90 EKPKGR 95 (101)
T ss_dssp ECCSCC
T ss_pred EEcCCC
Confidence 998643
No 349
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.55 E-value=1.5e-14 Score=116.06 Aligned_cols=80 Identities=19% Similarity=0.160 Sum_probs=70.9
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEec--CCCCCcEEEEEECCHHHHHHHHHhcCC-cccC---CceEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKI--PPRPPCYCFVEFENARDAEDAIRGRDG-YNFD---GCRLRV 77 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~~-~~~~---g~~l~v 77 (270)
.++++|||+|||..+|+++|+++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..||+ ..+. +++|.|
T Consensus 94 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v 173 (261)
T 3sde_A 94 THGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIV 173 (261)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEE
T ss_pred ccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEE
Confidence 4678999999999999999999999999999999854 567789999999999999999999954 4444 999999
Q ss_pred EecCCC
Q 024276 78 ELAHGG 83 (270)
Q Consensus 78 ~~~~~~ 83 (270)
.++...
T Consensus 174 ~~~~~~ 179 (261)
T 3sde_A 174 EPMEQF 179 (261)
T ss_dssp EECCCE
T ss_pred eecccc
Confidence 998765
No 350
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=2.7e-14 Score=107.45 Aligned_cols=78 Identities=14% Similarity=0.158 Sum_probs=70.9
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..+.++|||+|||..+++++|+++|+.||.|..+.+..+.. .|||||+|.+.++|..|++.|||..+. ++.|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~----Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLD----GRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCS----SSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEEC----CEEEE
Confidence 34568999999999999999999999999999999988752 369999999999999999999999998 89999
Q ss_pred eecCC
Q 024276 198 VKRYD 202 (270)
Q Consensus 198 v~~~~ 202 (270)
|.++.
T Consensus 161 V~~a~ 165 (177)
T 2f3j_A 161 IQLVA 165 (177)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 98875
No 351
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.55 E-value=9.5e-15 Score=97.18 Aligned_cols=73 Identities=21% Similarity=0.339 Sum_probs=67.0
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCCC
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYDR 203 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~~ 203 (270)
..+|||+|||..+++++|+++|+.| .|..+.+. ...|||||+|.+.++|..|++.|||..+. ++.|.|..+..
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~--~~~g~afV~f~~~~~a~~Ai~~l~g~~~~----g~~l~V~~a~~ 77 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD--RNKRTAFVTLLNGEQAQNAIQMFHQYSFR----GKDLIVQLQPT 77 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE--GGGTEEEECCSCHHHHHHHHHHHTTEEET----TEEEEEEECCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe--CCCcEEEEEECCHHHHHHHHHHhCCCeEC----CcEEEEEEcCC
Confidence 4799999999999999999999999 99999885 44579999999999999999999999998 99999998854
No 352
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.54 E-value=2.6e-14 Score=99.11 Aligned_cols=78 Identities=14% Similarity=0.112 Sum_probs=67.0
Q ss_pred CCCCeEEEcCCCCC----------ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCc
Q 024276 4 RFSRTIYVGNLPSD----------IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 4 ~~s~~l~V~nl~~~----------~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
-++++|.|.|+-.. -.+++|+++|++||.|.+|.|..+ .++|+|||+|.++++|.+|+..|||..|+|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~-~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN-SAQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT-CTTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC-CCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 46889999998332 124688999999999999998654 3589999999999999999999999999999
Q ss_pred eEEEEecCC
Q 024276 74 RLRVELAHG 82 (270)
Q Consensus 74 ~l~v~~~~~ 82 (270)
.|.|.++..
T Consensus 84 ~i~v~~~~~ 92 (114)
T 3s6e_A 84 MITAAYVPL 92 (114)
T ss_dssp ECEEEEECH
T ss_pred EEEEEEEcH
Confidence 999999853
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.54 E-value=2.2e-14 Score=104.45 Aligned_cols=81 Identities=12% Similarity=0.113 Sum_probs=68.9
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeE--------EEEe-eCCCCcEEEEEecChhhHHHHHHhcCCccccCccc
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVS-RDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWA 192 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~-~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~ 192 (270)
.+..+|||+|||..+++++|.++|+.||.|.. +.+. .....|||||+|.+.++|..|+..|||..+.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~---- 118 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLF---- 118 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEET----
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeC----
Confidence 34589999999999999999999999998865 3333 3344479999999999999999999999998
Q ss_pred ccceeeecCCCCCC
Q 024276 193 RGRITVKRYDRSPS 206 (270)
Q Consensus 193 ~~~i~v~~~~~~~~ 206 (270)
++.|.|.+++....
T Consensus 119 g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 119 GKPMVVQFARSARP 132 (143)
T ss_dssp TEECEEEECCCSCC
T ss_pred CcEEEEEECCCCCC
Confidence 99999999975443
No 354
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.53 E-value=4.3e-14 Score=99.61 Aligned_cols=77 Identities=16% Similarity=0.206 Sum_probs=68.5
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
.....+|||+|+ .+++++|+++|+.||.|..+.+. ...|||||+|.+.++|..|++.|||..+. ++.|.|.+
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~--~~kg~aFV~f~~~~~A~~Ai~~lng~~~~----g~~l~V~~ 107 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD--PPRNCAFVTYEKMESADQAVAELNGTQVE----SVQLKVNI 107 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE--TTTTEEEEECSSHHHHHHHHHHHTTCBCS----SCBCEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe--CCCCEEEEEECCHHHHHHHHHHhCCCEEC----CeEEEEEE
Confidence 345689999996 69999999999999999999886 34579999999999999999999999998 99999999
Q ss_pred CCCCC
Q 024276 201 YDRSP 205 (270)
Q Consensus 201 ~~~~~ 205 (270)
+...+
T Consensus 108 a~~~~ 112 (121)
T 2bz2_A 108 ARKQP 112 (121)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 87543
No 355
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.52 E-value=1.8e-14 Score=101.44 Aligned_cols=77 Identities=18% Similarity=0.190 Sum_probs=66.8
Q ss_pred CCCcceEEEeCCCCCCCHHHHHHHhhhcCce----eEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccc
Q 024276 121 RHSEYRVIVRGLPSSASWQDLKDHMRKAGDV----CFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v----~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
.....+|||+|||+.+++++|+++|+.||.| ..|.|+.+..+ |||||+|.+.++|.+|++. |+..+. +
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~----g 94 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLG----K 94 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESS----S
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeC----C
Confidence 3456899999999999999999999999975 57888877543 6999999999999999996 998888 8
Q ss_pred cceeeecCC
Q 024276 194 GRITVKRYD 202 (270)
Q Consensus 194 ~~i~v~~~~ 202 (270)
+.|.|..+.
T Consensus 95 R~i~V~~a~ 103 (123)
T 2dha_A 95 RYIELFRST 103 (123)
T ss_dssp CEECCEEEC
T ss_pred eEEEEEECC
Confidence 888887764
No 356
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.52 E-value=1.9e-14 Score=92.65 Aligned_cols=70 Identities=16% Similarity=0.298 Sum_probs=62.7
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
+|||+|||..+++++|+++|+.||.|..+.++.+.. .|||||+|.+.++|..|++. ++..+. |+.+.|..
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~----g~~l~v~~ 74 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVG----LSKCEIKV 74 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBT----TBCCCEEE
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeEC----CEEEEEEE
Confidence 589999999999999999999999999999987654 36999999999999999995 888887 88887765
No 357
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.24 E-value=2.1e-15 Score=105.89 Aligned_cols=81 Identities=22% Similarity=0.314 Sum_probs=72.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeE--------EEEeeCCC----CcEEEEEecChhhHHHHHHhcCCccccCc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCF--------AEVSRDSE----GTYGVVDYTNPEDMKYAIRKLDDTEFRNP 190 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~--------~~~~~~~~----~g~afv~f~~~~~a~~a~~~l~g~~~~~~ 190 (270)
+..+|||+|||..+++++|+++|+.||.|.. +.++.+.. .|||||+|.+.++|..|+..|||..+.
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~-- 83 (116)
T 2lcw_A 6 DNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS-- 83 (116)
Confidence 4579999999999999999999999999998 88877744 369999999999999999999999998
Q ss_pred ccccceeeecCCCCCCC
Q 024276 191 WARGRITVKRYDRSPSR 207 (270)
Q Consensus 191 ~~~~~i~v~~~~~~~~r 207 (270)
++.|.|..+...+.+
T Consensus 84 --g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 --GNPIKVSFATRRADF 98 (116)
Confidence 999999998755443
No 358
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.49 E-value=6.1e-14 Score=93.32 Aligned_cols=77 Identities=10% Similarity=0.167 Sum_probs=60.9
Q ss_pred CCCCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 120 SRHSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+..+|||+|||+.+++++|+++|++||.|..+.++.+ ..|||||+|++.++|.+ +++..+. ..+..|.|.
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~-srGfaFV~F~~~~~A~~----~~~~~~~--~~g~~v~v~ 79 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP-FRAFAFVTFADDKVAQS----LCGEDLI--IKGISVHIS 79 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS-CCSEEEEEESCHHHHHH----HTTCEEE--ETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC-CCCEEEEEECCHHHHHH----HcCCCcc--cCCEEEEEE
Confidence 3445689999999999999999999999999999999876 45799999999999983 5665432 227788888
Q ss_pred cCCC
Q 024276 200 RYDR 203 (270)
Q Consensus 200 ~~~~ 203 (270)
.+..
T Consensus 80 ~a~~ 83 (89)
T 3d2w_A 80 NAEP 83 (89)
T ss_dssp ECC-
T ss_pred EcCC
Confidence 7753
No 359
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.48 E-value=7.2e-14 Score=95.62 Aligned_cols=74 Identities=18% Similarity=0.318 Sum_probs=64.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
...+|||+|||..+++++|.++|+.||.|..+.++.+..+ |||||+|.+.++|..|+. ++..+. |..|.|.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~----g~~l~v~ 81 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFH----GKKLKLG 81 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEET----TEECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeEC----CEEEEEE
Confidence 4589999999999999999999999999999999988633 699999999999999999 777776 7777766
Q ss_pred cCC
Q 024276 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
.+.
T Consensus 82 ~a~ 84 (102)
T 2xs2_A 82 PAI 84 (102)
T ss_dssp EEE
T ss_pred ECC
Confidence 654
No 360
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=5.9e-14 Score=93.30 Aligned_cols=75 Identities=11% Similarity=0.154 Sum_probs=61.4
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
...+|||+|||..+++++|+++|+.||.|..+.++.+ ..|||||+|.+.++|++ +++..+. ..+..|.|..+.
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-~~g~afV~f~~~~~a~~----~~~~~~~--~~g~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP-FRAFAFVTFADDQIAQS----LCGEDLI--IKGISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS-CCSCCEEECSCHHHHHH----TTTCEEE--ETTEEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC-CCCEEEEEECCHHHHHH----HhcCCce--eCCEEEEEEecC
Confidence 3489999999999999999999999999999999876 45799999999999975 4454432 227888888876
Q ss_pred CC
Q 024276 203 RS 204 (270)
Q Consensus 203 ~~ 204 (270)
..
T Consensus 77 ~~ 78 (88)
T 1wf0_A 77 PK 78 (88)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=7.2e-13 Score=92.13 Aligned_cols=79 Identities=23% Similarity=0.338 Sum_probs=67.4
Q ss_pred CCCcceEEEeCCCCCCC-----------HHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccC
Q 024276 121 RHSEYRVIVRGLPSSAS-----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 121 ~~~~~~l~v~nl~~~~~-----------~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
..+..+|+|.||..... +++|+++|++||.|..+.+......|||||+|.+.++|..|+..|||..+.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~- 90 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG- 90 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET-
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC-
Confidence 34568999999954433 579999999999999997754445689999999999999999999999998
Q ss_pred cccccceeeecCCC
Q 024276 190 PWARGRITVKRYDR 203 (270)
Q Consensus 190 ~~~~~~i~v~~~~~ 203 (270)
++.|.|.++..
T Consensus 91 ---gr~l~v~~a~~ 101 (112)
T 2dit_A 91 ---GRQITAQAWDG 101 (112)
T ss_dssp ---TEECEEEECCS
T ss_pred ---CcEEEEEEeCC
Confidence 99999999864
No 362
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=6.7e-13 Score=101.29 Aligned_cols=74 Identities=18% Similarity=0.303 Sum_probs=65.3
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC---cEEEEEecChhhHHHHHHhcCCccccCcccccceeeec
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG---TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKR 200 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~---g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~ 200 (270)
..+|||+|||..+++++|+++|+.||.|..+.+..+..+ |||||+|++.++|..|+..++. .+. |+.|.|..
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~----Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYK----ETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EET----TEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eEC----CEEEEEEE
Confidence 479999999999999999999999999999999886543 6999999999999999986654 677 88898877
Q ss_pred CC
Q 024276 201 YD 202 (270)
Q Consensus 201 ~~ 202 (270)
..
T Consensus 184 ~~ 185 (193)
T 2voo_A 184 KD 185 (193)
T ss_dssp TT
T ss_pred hH
Confidence 54
No 363
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.45 E-value=2.6e-13 Score=94.03 Aligned_cols=74 Identities=15% Similarity=0.164 Sum_probs=66.3
Q ss_pred ceEEEeCC----CCCCCHHHHHHHhhhcCceeEEEEeeCCCC----cEEEEEecC----hhh----HHHHHH--hcCCcc
Q 024276 125 YRVIVRGL----PSSASWQDLKDHMRKAGDVCFAEVSRDSEG----TYGVVDYTN----PED----MKYAIR--KLDDTE 186 (270)
Q Consensus 125 ~~l~v~nl----~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~----g~afv~f~~----~~~----a~~a~~--~l~g~~ 186 (270)
..|||+|| |+.+++++|+++|+.||+|..+.++.|+.+ |||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 58999999 999999999999999999999999999988 499999996 444 789988 889999
Q ss_pred ccCcccccceeeecCC
Q 024276 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
|. |+.|+|...+
T Consensus 83 I~----Gr~irV~ln~ 94 (136)
T 2j8a_A 83 IM----GFKFEVILNK 94 (136)
T ss_dssp ET----TEEEEEEECC
T ss_pred ec----CcEEEEEECc
Confidence 99 9999998775
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.45 E-value=5.7e-13 Score=91.20 Aligned_cols=77 Identities=14% Similarity=0.124 Sum_probs=66.9
Q ss_pred CCcceEEEeCCCC-----CCCHHHHHHHhhhcCceeEEEEeeCCC-----CcEEEEEecChhhHHHHHHhcCCccccCcc
Q 024276 122 HSEYRVIVRGLPS-----SASWQDLKDHMRKAGDVCFAEVSRDSE-----GTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 122 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~g~v~~~~~~~~~~-----~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
.++.+|+|.||.. .-++++|+++|++||.|..+.++.++. .|+|||+|.+.++|.+|+..|||..+.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~--- 82 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFG--- 82 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEET---
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEEC---
Confidence 3567999999973 237899999999999999999988642 479999999999999999999999999
Q ss_pred cccceeeecCC
Q 024276 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|+.|.|.++.
T Consensus 83 -Gr~i~v~~a~ 92 (105)
T 2pe8_A 83 -GRVVKACFYN 92 (105)
T ss_dssp -TEECEEEECC
T ss_pred -CcEEEEEEcC
Confidence 9999998875
No 365
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=4.8e-13 Score=92.76 Aligned_cols=76 Identities=14% Similarity=0.162 Sum_probs=68.1
Q ss_pred CCCCeEEEcCCCCC-ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECC-HHHHHHHHHhcC--CcccCCceEEEEe
Q 024276 4 RFSRTIYVGNLPSD-IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN-ARDAEDAIRGRD--GYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~-~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~-~~~a~~A~~~l~--~~~~~g~~l~v~~ 79 (270)
.+.+.|||+||+.. ++.++|+++|++||+|..|.+..+ ..+|||+|.+ +++|..|+..|| +..|.|..++++.
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ev 92 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEV 92 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEE
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEE
Confidence 46899999999999 999999999999999999999776 3479999999 899999999994 7899999999987
Q ss_pred cCC
Q 024276 80 AHG 82 (270)
Q Consensus 80 ~~~ 82 (270)
...
T Consensus 93 L~G 95 (121)
T 1owx_A 93 LEG 95 (121)
T ss_dssp CCH
T ss_pred CCC
Confidence 653
No 366
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.45 E-value=2.4e-13 Score=106.21 Aligned_cols=82 Identities=12% Similarity=0.213 Sum_probs=69.4
Q ss_pred CCcceEEEeCCCCCC---------CHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc----
Q 024276 122 HSEYRVIVRGLPSSA---------SWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR---- 188 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~---- 188 (270)
....+|||+||+..+ ++++|.++|+.||.|..|.++.. .|||||+|.+.++|+.|++.|+|..|.
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~--kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~ 209 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES--KNCGFVKFKYQANAEFAKEAMSNQTLLLPSD 209 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG--GTEEEEEESSHHHHHHHHHHHTTCCCCCTTS
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC--CCEEEEEeCCHHHHHHHHHHhCCCEEecccc
Confidence 356899999999998 79999999999999999999875 379999999999999999999999991
Q ss_pred ----CcccccceeeecCCCCC
Q 024276 189 ----NPWARGRITVKRYDRSP 205 (270)
Q Consensus 189 ----~~~~~~~i~v~~~~~~~ 205 (270)
+...+..|.|..+...+
T Consensus 210 ~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 210 KEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TTGGGGGGSCCCEEEECC---
T ss_pred ccccccCCCCEEEEEEccCCC
Confidence 11138999999997544
No 367
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=2.9e-13 Score=94.47 Aligned_cols=64 Identities=16% Similarity=0.337 Sum_probs=55.6
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCC-------CCcEEEEEecChhhHHHHHHhc---CCccc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDS-------EGTYGVVDYTNPEDMKYAIRKL---DDTEF 187 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~-------~~g~afv~f~~~~~a~~a~~~l---~g~~~ 187 (270)
..++|||+|||..+++++|+++|++||.|. +.++.+. ..|||||+|.+.++|.+|++.| +|..+
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 347999999999999999999999999999 7776653 2479999999999999999998 66644
No 368
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.35 E-value=2.4e-12 Score=88.14 Aligned_cols=76 Identities=21% Similarity=0.244 Sum_probs=64.9
Q ss_pred CcceEEEeCC--CCCCC--------HHHHHHHhhhcCceeEEEEeeCCC------CcEEEEEecChhhHHHHHHhcCCcc
Q 024276 123 SEYRVIVRGL--PSSAS--------WQDLKDHMRKAGDVCFAEVSRDSE------GTYGVVDYTNPEDMKYAIRKLDDTE 186 (270)
Q Consensus 123 ~~~~l~v~nl--~~~~~--------~~~l~~~f~~~g~v~~~~~~~~~~------~g~afv~f~~~~~a~~a~~~l~g~~ 186 (270)
++..|.|.|+ |..+. +++|+++|++||.|..+.++.+.. .|++||+|.+.++|.+|+..|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4578999998 33333 368999999999999999987753 4799999999999999999999999
Q ss_pred ccCcccccceeeecCC
Q 024276 187 FRNPWARGRITVKRYD 202 (270)
Q Consensus 187 ~~~~~~~~~i~v~~~~ 202 (270)
+. |+.|.+.+..
T Consensus 84 f~----GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FA----NRVVVTKYCD 95 (105)
T ss_dssp ET----TEECEEEEEC
T ss_pred eC----CCEEEEEEeC
Confidence 99 9999988764
No 369
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.2e-12 Score=82.42 Aligned_cols=75 Identities=16% Similarity=0.243 Sum_probs=63.1
Q ss_pred CCCCCeEEEcCCC----CCccH----HHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCce
Q 024276 3 GRFSRTIYVGNLP----SDIRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 3 ~~~s~~l~V~nl~----~~~t~----~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
+-+--||+|.-++ .+.-+ .+|.+.|.+||+|..+++..+ .+||+|.+.++|.+|+. |||..++|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 3566788887766 23333 678999999999999999854 48999999999999999 9999999999
Q ss_pred EEEEecCCC
Q 024276 75 LRVELAHGG 83 (270)
Q Consensus 75 l~v~~~~~~ 83 (270)
|+|+++.+.
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999998754
No 370
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.33 E-value=3.7e-12 Score=88.82 Aligned_cols=76 Identities=16% Similarity=0.266 Sum_probs=65.7
Q ss_pred CcceEEEeCCCCC--C---CHHHHHHHhhhcCceeEEEEeeCCCC--------cEEEEEecChhhHHHHHHhcCCccccC
Q 024276 123 SEYRVIVRGLPSS--A---SWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 123 ~~~~l~v~nl~~~--~---~~~~l~~~f~~~g~v~~~~~~~~~~~--------g~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
++.+|+|.|+-.. + .+++|+++|++||.|..+.|+.+..+ |++||+|.+.++|.+|+..|||..+.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~- 97 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA- 97 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET-
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC-
Confidence 5689999998532 2 36899999999999999999887542 69999999999999999999999999
Q ss_pred cccccceeeecCC
Q 024276 190 PWARGRITVKRYD 202 (270)
Q Consensus 190 ~~~~~~i~v~~~~ 202 (270)
|+.|.+.++.
T Consensus 98 ---GR~i~v~~~~ 107 (118)
T 3ue2_A 98 ---GRKVVAEVYD 107 (118)
T ss_dssp ---TEECEEEEEC
T ss_pred ---CcEEEEEEcC
Confidence 9999988764
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.31 E-value=7.4e-12 Score=86.69 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=66.2
Q ss_pred CCcceEEEeCCCCCCC----------HHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcc
Q 024276 122 HSEYRVIVRGLPSSAS----------WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPW 191 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~----------~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~ 191 (270)
.++..|.+.|+-.... +++|+++|++||.|..+.+..+...|++||+|.+.++|.+|++.|||..+.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~--- 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFA--- 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEET---
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEEC---
Confidence 4567899999753332 357899999999999999988776789999999999999999999999999
Q ss_pred cccceeeecCC
Q 024276 192 ARGRITVKRYD 202 (270)
Q Consensus 192 ~~~~i~v~~~~ 202 (270)
|+.|.+.++.
T Consensus 82 -GR~i~v~~~~ 91 (114)
T 3s6e_A 82 -GKMITAAYVP 91 (114)
T ss_dssp -TEECEEEEEC
T ss_pred -CEEEEEEEEc
Confidence 9999998875
No 372
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.28 E-value=5.6e-12 Score=103.71 Aligned_cols=67 Identities=21% Similarity=0.220 Sum_probs=59.5
Q ss_pred CCCCcceEEEeC--CCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024276 120 SRHSEYRVIVRG--LPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 120 ~~~~~~~l~v~n--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
...++.+|||+| |+..+++++|+++|++||.|..+.+.. ..|||||+|.+.++|++|++.|||.++.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~--~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP--NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT--TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 345678999999 578999999999999999999887765 4579999999999999999999999884
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.24 E-value=2.9e-12 Score=87.60 Aligned_cols=69 Identities=23% Similarity=0.252 Sum_probs=58.1
Q ss_pred EeCCCCCCCHHHHHHHh------------hhcCceeEEEEeeCCC---CcEEEEEecChhhHHHHHHhcCCccccCcccc
Q 024276 129 VRGLPSSASWQDLKDHM------------RKAGDVCFAEVSRDSE---GTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 129 v~nl~~~~~~~~l~~~f------------~~~g~v~~~~~~~~~~---~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
+.+|+..+++++|+++| ++||.|..+.++.+.. .|||||+|.+.++|.+|+..|||..+. |
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~----G 95 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFN----G 95 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEET----T
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEEC----C
Confidence 45666777777766665 9999999999988753 379999999999999999999999999 8
Q ss_pred cceeeecC
Q 024276 194 GRITVKRY 201 (270)
Q Consensus 194 ~~i~v~~~ 201 (270)
+.|.|.++
T Consensus 96 r~i~v~~s 103 (104)
T 1jmt_A 96 QPIHAELS 103 (104)
T ss_dssp EECCEEEC
T ss_pred EEEEEEEc
Confidence 99988764
No 374
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=3.2e-10 Score=76.47 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=60.2
Q ss_pred ceEEEeCCC-------CCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 125 YRVIVRGLP-------SSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 125 ~~l~v~nl~-------~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
..|.|.-.. ..+++++|+++|++||.|..+.++. ...|||||+|++.++|..|++.+++ +. ++.|.
T Consensus 11 ~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~-~~rGfaFVeF~~~~~A~~Ai~~~~~--~~----g~~l~ 83 (100)
T 2d9o_A 11 PKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS-KKPGTAVVEFATVKAAELAVQNEVG--LV----DNPLK 83 (100)
T ss_dssp CEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES-SSSSEEEEEESCHHHHHHHHHTCCB--CS----SSBCE
T ss_pred ceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc-CCCCEEEEEECCHHHHHHHHHhcCC--CC----CCeEE
Confidence 466665443 5689999999999999999999883 4557999999999999999998665 33 78899
Q ss_pred eecCCCCC
Q 024276 198 VKRYDRSP 205 (270)
Q Consensus 198 v~~~~~~~ 205 (270)
|.++...+
T Consensus 84 V~~a~~~~ 91 (100)
T 2d9o_A 84 ISWLEGQP 91 (100)
T ss_dssp EECSSCCC
T ss_pred EEEccCCC
Confidence 99886544
No 375
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.9e-11 Score=78.79 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=61.6
Q ss_pred CCCCCeEEEcCCCCC-----ccH----HHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCc
Q 024276 3 GRFSRTIYVGNLPSD-----IRE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 3 ~~~s~~l~V~nl~~~-----~t~----~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
+-|--||+|.-++.. +-+ .+|.+.|.+||+|..+++..+ -+||+|.+.++|.+||. |||..|+|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-----~~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-----QMLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-----EEEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-----cEEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 356779999887642 222 568899999999999999865 39999999999999999 999999999
Q ss_pred eEEEEecC
Q 024276 74 RLRVELAH 81 (270)
Q Consensus 74 ~l~v~~~~ 81 (270)
.|+|.+..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998743
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.14 E-value=2e-10 Score=79.52 Aligned_cols=75 Identities=11% Similarity=0.213 Sum_probs=63.8
Q ss_pred CCCCcceEEEeCCCCC-CCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecC-hhhHHHHHHhcC--CccccCcccccc
Q 024276 120 SRHSEYRVIVRGLPSS-ASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTN-PEDMKYAIRKLD--DTEFRNPWARGR 195 (270)
Q Consensus 120 ~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~-~~~a~~a~~~l~--g~~~~~~~~~~~ 195 (270)
.-..++.|+|+||+.. ++.++|+++|+.||.|.+|.+..+.. .|||.|.+ .++|..|+.+|+ +..|. +..
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~--tgfVrf~~~~~~A~~av~~ln~~~~~i~----g~~ 87 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK--EGIILFKEKAKEALGKAKDANNGNLQLR----NKE 87 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS--EEEEEESSCHHHHHHHHHHTTTSCBCTT----SSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC--EEEEEECCChHHHHHHHHHhhcCCcEEe----CcE
Confidence 3456799999999999 99999999999999999999988876 79999999 799999999995 55666 555
Q ss_pred eeeec
Q 024276 196 ITVKR 200 (270)
Q Consensus 196 i~v~~ 200 (270)
+.++.
T Consensus 88 ~~~ev 92 (121)
T 1owx_A 88 VTWEV 92 (121)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55543
No 377
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.02 E-value=6.2e-10 Score=86.94 Aligned_cols=77 Identities=25% Similarity=0.285 Sum_probs=63.0
Q ss_pred CCeEEEcCCCC-----CccHHHHHHHhhcccceEEEEEec-------CCCCCcEEEEEECCHHHHHHHHHhcCCcccCCc
Q 024276 6 SRTIYVGNLPS-----DIREYEVEDLFYKYGRILDIELKI-------PPRPPCYCFVEFENARDAEDAIRGRDGYNFDGC 73 (270)
Q Consensus 6 s~~l~V~nl~~-----~~t~~~L~~~F~~~G~v~~~~~~~-------~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~ 73 (270)
+..+.+.|+-. .-.+++|.+.|++||.|..+.|.. ++.++|++||+|.+.++|.+|+..|||..|+|+
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 34455554422 234688999999999999999953 236789999999999999999999999999999
Q ss_pred eEEEEecCC
Q 024276 74 RLRVELAHG 82 (270)
Q Consensus 74 ~l~v~~~~~ 82 (270)
.|.|.+...
T Consensus 204 ~i~~~~~~~ 212 (222)
T 3dxb_A 204 KVVAEVYDQ 212 (222)
T ss_dssp BCEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999753
No 378
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.98 E-value=3.1e-09 Score=70.59 Aligned_cols=74 Identities=15% Similarity=0.118 Sum_probs=68.2
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcc-----cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
+..++|-|-|||..++++.|+.|+..+ |.|..|.+..+ -+=|+|+|.+...|.+|.-.|+|..|.|++|+|.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD---H~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD---FNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT---TTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC---CCceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 457899999999999999999999999 99999999877 5679999999999999998899999999999997
Q ss_pred ec
Q 024276 79 LA 80 (270)
Q Consensus 79 ~~ 80 (270)
-.
T Consensus 96 Tv 97 (117)
T 2l9w_A 96 TI 97 (117)
T ss_dssp CH
T ss_pred CH
Confidence 54
No 379
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=1.8e-09 Score=70.09 Aligned_cols=72 Identities=17% Similarity=0.135 Sum_probs=60.4
Q ss_pred cceEEEeCCC----CCCCH----HHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccc
Q 024276 124 EYRVIVRGLP----SSASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGR 195 (270)
Q Consensus 124 ~~~l~v~nl~----~~~~~----~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~ 195 (270)
..+|+|..++ ..+.+ .+|.+.|..||.|..+++..+. +||+|.+.+.|.+|++ |||..+. ++.
T Consensus 7 d~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~----~fVtF~d~~sAlaAi~-mnG~~v~----Gr~ 77 (91)
T 2dnr_A 7 GGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK----MWVTFLEGSSALNVLS-LNGKELL----NRT 77 (91)
T ss_dssp SCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS----EEEEESSHHHHHHGGG-GTTCEET----TEE
T ss_pred CCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC----EEEEECChHHHHHHHh-cCCeEeC----CeE
Confidence 3577777665 23434 5799999999999999999974 9999999999999998 9999999 999
Q ss_pred eeeecCCCC
Q 024276 196 ITVKRYDRS 204 (270)
Q Consensus 196 i~v~~~~~~ 204 (270)
|+|......
T Consensus 78 LkV~lkt~d 86 (91)
T 2dnr_A 78 ITIALKSPS 86 (91)
T ss_dssp EEEEECCCS
T ss_pred EEEEeCCCC
Confidence 999987643
No 380
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=1.3e-08 Score=66.38 Aligned_cols=70 Identities=9% Similarity=0.188 Sum_probs=59.5
Q ss_pred CcceEEEeCCCCC-----CCH----HHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccc
Q 024276 123 SEYRVIVRGLPSS-----ASW----QDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWAR 193 (270)
Q Consensus 123 ~~~~l~v~nl~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~ 193 (270)
+..+|+|..++.. +.+ .+|.+.|..||.|..+++..+. +||+|.+.++|.+|++ |||.++. +
T Consensus 14 pD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~----~fVtF~d~~sAl~AI~-ldG~~v~----G 84 (95)
T 1ufw_A 14 LDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ----MLVTFADSHSALSVLD-VDGMKVK----G 84 (95)
T ss_dssp TTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE----EEEECSCSHHHHHHHH-GGGSEET----T
T ss_pred CCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc----EEEEEcChHHHHHHHh-cCCeeeC----C
Confidence 4468888877643 333 5689999999999999999984 9999999999999998 9999999 9
Q ss_pred cceeeecC
Q 024276 194 GRITVKRY 201 (270)
Q Consensus 194 ~~i~v~~~ 201 (270)
+.|+|...
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99988764
No 381
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=1.1e-07 Score=62.65 Aligned_cols=74 Identities=19% Similarity=0.248 Sum_probs=63.1
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcc-----cceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKY-----GRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~-----G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.-.++|.|.|||+.+.++.|.-+|+.- |+|..|.... +-|+|+|.+.+.|+..|+ -..+.|.+.+|.|.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~-k~~H~L~~~~LsV~ 79 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLA-QADHELHGAQLSLR 79 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHT-CSCCBSSSSBCEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhc-CCcceecCeEEEEE
Confidence 346799999999999999999999971 5999988863 679999999999999999 55788999999998
Q ss_pred ecCCC
Q 024276 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
+....
T Consensus 80 P~~~~ 84 (104)
T 2dhx_A 80 PAPPR 84 (104)
T ss_dssp ECCCC
T ss_pred cCCCC
Confidence 85544
No 382
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.60 E-value=9.5e-08 Score=74.42 Aligned_cols=63 Identities=17% Similarity=0.270 Sum_probs=55.5
Q ss_pred CCHHHHHHHhhhcCceeEEEEeeCCCC--------cEEEEEecChhhHHHHHHhcCCccccCcccccceeeecCC
Q 024276 136 ASWQDLKDHMRKAGDVCFAEVSRDSEG--------TYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVKRYD 202 (270)
Q Consensus 136 ~~~~~l~~~f~~~g~v~~~~~~~~~~~--------g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~~~~ 202 (270)
-.+++|.+.|.+||.|..+.+..+..+ |++||+|.+.++|.+|++.|||..+. |+.|.+.+..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~----gr~i~~~~~~ 211 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA----GRKVVAEVYD 211 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSS----SSBCEEEECC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceEC----CeEEEEEEcC
Confidence 356789999999999999999855332 69999999999999999999999999 9999988765
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=7.5e-07 Score=59.08 Aligned_cols=77 Identities=19% Similarity=0.144 Sum_probs=65.2
Q ss_pred CCCCeEEEcCCCCCc-cH----HHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 4 RFSRTIYVGNLPSDI-RE----YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~-t~----~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
.-.++|+|+||+..+ .. +.++.+|..|+++..+...+. -.=..|.|.++++|.+|-..|++..+.|+.|+|.
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 446789999998864 32 567899999999999888654 3357899999999999999999999999999999
Q ss_pred ecCCC
Q 024276 79 LAHGG 83 (270)
Q Consensus 79 ~~~~~ 83 (270)
+++..
T Consensus 80 Fgq~~ 84 (104)
T 1wey_A 80 FAQTL 84 (104)
T ss_dssp CCCCS
T ss_pred ecCCC
Confidence 99854
No 384
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.44 E-value=1.6e-06 Score=57.72 Aligned_cols=71 Identities=11% Similarity=0.077 Sum_probs=64.8
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhc-----CceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCccccccee
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKA-----GDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRIT 197 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~ 197 (270)
...+|-+-|||..++++.|+.+++.+ |.+..+.+..+.. -|+|+|.+...|.+|.-.|+|.+|. ++.|+
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~--GAivef~d~~~AgKasLaL~G~ef~----gr~Lr 93 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN--GAIIIFRDSKFAAKMLMILNGSQFQ----GKVIR 93 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT--EEEEECSCHHHHHHHHHHHSSEEET----TEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC--ceEEEEccchhhHHHHhhcCCeeec----CeEEE
Confidence 35799999999999999999999999 9999998888764 6999999999999999999999999 88887
Q ss_pred ee
Q 024276 198 VK 199 (270)
Q Consensus 198 v~ 199 (270)
+.
T Consensus 94 ~g 95 (117)
T 2l9w_A 94 SG 95 (117)
T ss_dssp EE
T ss_pred ec
Confidence 64
No 385
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=98.03 E-value=3.2e-05 Score=52.75 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=59.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCC-ceEEEEecC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDG-CRLRVELAH 81 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~l~v~~~~ 81 (270)
..+.|.|-+.|+.. ...|...|++||.|.+.... .......|.|.+..+|++||. .||..|+| ..|=|.+..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---NTGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---SSSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEEECC
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---CCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEEECC
Confidence 36788999999885 56788999999999988872 235799999999999999999 89999975 667777754
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.99 E-value=2.9e-05 Score=50.63 Aligned_cols=65 Identities=17% Similarity=0.229 Sum_probs=54.7
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
++|.|.+||+.+|++++.+.+..+..+........ .....-|||.|.+.+++....+.++|..|-
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 57999999999999999999999888776666432 123467999999999999999999998884
No 387
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.90 E-value=2.3e-05 Score=51.07 Aligned_cols=54 Identities=19% Similarity=0.358 Sum_probs=45.6
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
.+.++| ++|+.+...||.++|+.||.| .|..+.+ ..|||.|.+++.|..|+..+
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD----TsAlvvf~~~~~a~~al~~i 69 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQPEQVQIAVNTS 69 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET----TEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC----CeEEEEecCHHHHHHHHHhc
Confidence 467788 999999999999999999943 3555543 47999999999999999966
No 388
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.89 E-value=2.5e-05 Score=51.00 Aligned_cols=54 Identities=17% Similarity=0.348 Sum_probs=45.4
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
+.++| ++|+.+...||.++|+.||. ..|..+.+ ..|||.|.+++.|..|+..++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidD----TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDD----TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEET----TEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcC----CeEEEEecCHHHHHHHHHhcc
Confidence 56777 99999999999999999993 33555553 479999999999999999764
No 389
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=97.77 E-value=0.00012 Score=48.51 Aligned_cols=72 Identities=13% Similarity=0.062 Sum_probs=61.0
Q ss_pred ceEEEeCCCCCCC-----HHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCccccCcccccceeee
Q 024276 125 YRVIVRGLPSSAS-----WQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFRNPWARGRITVK 199 (270)
Q Consensus 125 ~~l~v~nl~~~~~-----~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~~~~~~~~i~v~ 199 (270)
++|+|+||+..+- .+.++++|..|+++......+.-. -..|.|.++++|.+|...||+..+. |..+++-
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR--Rirv~F~~~~~A~~AR~~Lh~~~f~----g~~~r~Y 79 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK--RVRINFSNPLSAADARLRLHKTEFL----GKEMKLY 79 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT--EEEEECSSTTHHHHHHHTSTTSEET----TEECEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce--EEEEEeCChHHHHHHHHHhccceec----CceeEEE
Confidence 6899999987662 257899999999988766665432 5789999999999999999999999 8899998
Q ss_pred cCC
Q 024276 200 RYD 202 (270)
Q Consensus 200 ~~~ 202 (270)
++.
T Consensus 80 Fgq 82 (104)
T 1wey_A 80 FAQ 82 (104)
T ss_dssp CCC
T ss_pred ecC
Confidence 886
No 390
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.59 E-value=0.0005 Score=44.76 Aligned_cols=65 Identities=18% Similarity=0.387 Sum_probs=56.3
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC------cEEEEEecChhhHHHHHHhcCCccccC
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------g~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
..|.|.+||+.+|++++.+.+.....+.......+... .-|||.|.+.+++..-.+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 47899999999999999999999988877777665432 279999999999999999999998873
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.51 E-value=0.00064 Score=44.86 Aligned_cols=54 Identities=24% Similarity=0.286 Sum_probs=47.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhh-----cCceeEEEEeeCCCCcEEEEEecChhhHHHHHHh
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRK-----AGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~-----~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 181 (270)
..+|.|.|||..+.++.|.-+|+. -|+|..++... +-|+|+|.+.+.|+..+++
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~----~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG----CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET----TEEEEEESSHHHHHHHHTC
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC----CcEEEEEcChHHHHHHhcC
Confidence 479999999999999999999988 25788887766 3899999999999999886
No 392
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.44 E-value=0.00096 Score=43.45 Aligned_cols=54 Identities=19% Similarity=0.243 Sum_probs=44.8
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 183 (270)
..++| ++|..+...||.++|+.||.|. |..+.|. .|||.|.+++.|..|+..+.
T Consensus 17 HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT---sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 17 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT---SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp SEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT---EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 45555 9999999999999999999553 5555554 89999999999999998764
No 393
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=97.33 E-value=0.00012 Score=62.47 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=45.7
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.++|+|. .|..+++.+|.++|++||+|.++.+..+. ..||.|||.+.++|..++. ..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~-~~~~p~~ 114 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN-GTHTPXX 114 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS-SCCCCCC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh-ccCCCcc
Confidence 4789997 79999999999999999999999887643 4799999999999998876 3333333
No 394
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.29 E-value=0.00028 Score=46.26 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=50.9
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecC-----CCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIP-----PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~-----~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
.+-+|.|..||+.+|++++.+.+..+-++........ ...-.-|||.|.+++++....+.++|..|-
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 4568999999999999999888887655433222221 112356899999999999999999998874
No 395
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.24 E-value=0.00073 Score=46.72 Aligned_cols=76 Identities=24% Similarity=0.294 Sum_probs=56.8
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhhcccceEEEE-Eec---------------CC-CCCcEEEEEECCHHHHHHHHHhcCC
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFYKYGRILDIE-LKI---------------PP-RPPCYCFVEFENARDAEDAIRGRDG 67 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~-~~~---------------~~-~~~g~afV~f~~~~~a~~A~~~l~~ 67 (270)
....|.|-+.|+..+ ..+.+.|++||.|.+-. +.. .. .......|+|.++.+|.+||. .||
T Consensus 6 ~e~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 456788888876654 67888999999987621 110 00 124677999999999999999 999
Q ss_pred cccCCceEEEEecCC
Q 024276 68 YNFDGCRLRVELAHG 82 (270)
Q Consensus 68 ~~~~g~~l~v~~~~~ 82 (270)
..|+|..|=|.+...
T Consensus 84 ~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTK 98 (132)
T ss_dssp CEETTEECEEEECCH
T ss_pred eEeCcEEEEEEECCH
Confidence 999999888888753
No 396
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.22 E-value=0.0017 Score=44.23 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=52.3
Q ss_pred CCcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCCcccc
Q 024276 122 HSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDDTEFR 188 (270)
Q Consensus 122 ~~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g~~~~ 188 (270)
.....|.|.++|... ...|..+|++||.|+.... ....+...|.|.+..+|++|+. .||..+.
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~--~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~ 84 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM--SNTGNWMHIRYQSKLQARKALS-KDGRIFG 84 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE--CSSSSEEEEEESSHHHHHHHHT-TTTCEET
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc--CCCCCeEEEEeCCHHHHHHHHH-hCCeEec
Confidence 346789999999885 6778899999999988776 3334599999999999999999 4888876
No 397
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.09 E-value=0.0016 Score=42.58 Aligned_cols=53 Identities=21% Similarity=0.271 Sum_probs=44.4
Q ss_pred eEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcC
Q 024276 126 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLD 183 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~ 183 (270)
.++| ++|..+...||.++|+.||.| .|..+.+. .|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT---sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT---EEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC---eEEEEecCHHHHHHHHHhcc
Confidence 4555 999999999999999999944 35555554 89999999999999999764
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.64 E-value=0.003 Score=41.33 Aligned_cols=65 Identities=18% Similarity=0.336 Sum_probs=51.2
Q ss_pred ceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCC------cEEEEEecChhhHHHHHHhcCCccccC
Q 024276 125 YRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEG------TYGVVDYTNPEDMKYAIRKLDDTEFRN 189 (270)
Q Consensus 125 ~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~------g~afv~f~~~~~a~~a~~~l~g~~~~~ 189 (270)
..|.|..||+.+|++++.+.+...-.+.......+... .-|||.|.+.++...-.+.++|..+.+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 68999999999999999888877655543333332221 269999999999999999999998873
No 399
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.74 E-value=0.0076 Score=51.41 Aligned_cols=57 Identities=16% Similarity=0.228 Sum_probs=42.7
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHh
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~ 181 (270)
....|+|. .|..+++.+|.++|++||+|..+.+..+. +-||.|||.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~-g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF-GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS-SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC-CeEEEEEeCCHHHHHHHHhc
Confidence 34689998 79999999999999999999998887654 24999999999999877543
No 400
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=94.52 E-value=0.06 Score=37.19 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=49.2
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEE-EEee--------------CC---CCcEEEEEecChhhHHHHHHhcCCc
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFA-EVSR--------------DS---EGTYGVVDYTNPEDMKYAIRKLDDT 185 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~-~~~~--------------~~---~~g~afv~f~~~~~a~~a~~~l~g~ 185 (270)
...|.|-+.|...... +-++|++||.|+.- .... -+ ..+...|.|.+..+|.+|+. .||.
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ 84 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGA 84 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTC
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCe
Confidence 3578888887665554 66789999998662 1111 00 12488999999999999998 6888
Q ss_pred cccCcccccceeeecC
Q 024276 186 EFRNPWARGRITVKRY 201 (270)
Q Consensus 186 ~~~~~~~~~~i~v~~~ 201 (270)
.|. |.-|=|...
T Consensus 85 ii~----G~mIGV~Py 96 (132)
T 3p3d_A 85 VFN----GVLLGVIPY 96 (132)
T ss_dssp EET----TEECEEEEC
T ss_pred EeC----cEEEEEEEC
Confidence 777 444444443
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.47 E-value=0.18 Score=43.79 Aligned_cols=55 Identities=18% Similarity=0.345 Sum_probs=44.9
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcC
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
.+.++|+ +|+.+...+|.++|+.||.| .|.++. ...|||.|.+.+.|..++..++
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid----dt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID----DTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS----SSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc----CCeEEEEECCHHHHHHHHHHHH
Confidence 3567776 88999999999999999954 455443 3579999999999999999885
No 402
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=92.80 E-value=0.54 Score=29.04 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=45.1
Q ss_pred eEEEcCCCC-CccHHHHHHHhhccc-----ceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 8 TIYVGNLPS-DIREYEVEDLFYKYG-----RILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 8 ~l~V~nl~~-~~t~~~L~~~F~~~G-----~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
+|+|..--. .+.+.+|..++..-+ .|-.|.+. -.|.||+-... .|..++..|++..+.|+.+.|..+.
T Consensus 2 ~~~i~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~-----d~~s~v~v~~~-~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYFNGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIM-----DNASYVEILNG-KGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp EEEESCCCC----CHHHHHHHHTSTTCCGGGEEEEEEC-----SSCEEEEECTT-CHHHHHHHHTTCCC---CCCEEECC
T ss_pred EEEEeCCCccCCCHHHHHHHHHHccCCChhhccEEEEe-----CCcEEEEECHH-HHHHHHHHhccccCcCceEEEEECC
Confidence 567743322 377888888777443 56777776 35899998765 4677888899999999999998764
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=89.94 E-value=2.5 Score=26.74 Aligned_cols=69 Identities=17% Similarity=0.200 Sum_probs=52.3
Q ss_pred CCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEe
Q 024276 4 RFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVEL 79 (270)
Q Consensus 4 ~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 79 (270)
..+|-|.|-|||..+-..++.-.....|---.|..+ -|.|.|.|.+.++-..|++.|-+ -++..|.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqklln--hnnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLN--HNNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEE--TTTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHh--cCCCEEEEEE
Confidence 467899999999999888887777777754555554 47899999999999999987632 2345666665
No 404
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=88.99 E-value=1.4 Score=38.29 Aligned_cols=56 Identities=18% Similarity=0.238 Sum_probs=45.4
Q ss_pred cceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhcCC
Q 024276 124 EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKLDD 184 (270)
Q Consensus 124 ~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l~g 184 (270)
...++|+ +|..+...+|.++|+.||.+ .|..+.+. .|||.|.+.+.|..++..+..
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt---~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT---SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS---EEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC---eEEEEECCHHHHHHHHHHHHh
Confidence 3466665 99999999999999999954 45555543 899999999999999998864
No 405
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=82.36 E-value=7.2 Score=24.63 Aligned_cols=56 Identities=14% Similarity=0.298 Sum_probs=48.0
Q ss_pred CcceEEEeCCCCCCCHHHHHHHhhhcCceeEEEEeeCCCCcEEEEEecChhhHHHHHHhc
Q 024276 123 SEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 123 ~~~~l~v~nl~~~~~~~~l~~~f~~~g~v~~~~~~~~~~~g~afv~f~~~~~a~~a~~~l 182 (270)
..+.+.|-|+|..+-..++--.....|.-..+..+. |.|.+.|.+.++..-|+++|
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid----gqamirfqnsdeqrlaiqkl 66 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID----GQAMIRFQNSDEQRLAIQKL 66 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS----SCEEEEESSHHHHHHHHHHH
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec----CeeEEEecCChHHHHHHHHH
Confidence 357889999999999999888888888877777766 47999999999999999876
No 406
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=72.79 E-value=5.3 Score=28.94 Aligned_cols=56 Identities=14% Similarity=0.092 Sum_probs=38.6
Q ss_pred eEEEcCCCCC---------ccHHHHHHHh--hcccceEEEEEecCCCCCcEEEEEECCH-HHHHHHHH
Q 024276 8 TIYVGNLPSD---------IREYEVEDLF--YKYGRILDIELKIPPRPPCYCFVEFENA-RDAEDAIR 63 (270)
Q Consensus 8 ~l~V~nl~~~---------~t~~~L~~~F--~~~G~v~~~~~~~~~~~~g~afV~f~~~-~~a~~A~~ 63 (270)
++.|-|+|.. .+..+|.+.| ..|.++.-..+.......|+|.|+|..- .--..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 5677888872 3457899977 8998877555544445678999999854 34444555
No 407
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=59.99 E-value=1.7 Score=30.85 Aligned_cols=28 Identities=11% Similarity=0.132 Sum_probs=18.7
Q ss_pred HHHHHHhhcccceEEEEEecCCCCCcEEEEEEC
Q 024276 21 YEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 21 ~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
+|+.+||...|.|+-+... +||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn~~-----kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFNVR-----MGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEETT-----TTEEEEEEE
T ss_pred CcccccccceeEEEEEECC-----CCeeEEeeC
Confidence 5667788888887765543 899999976
No 408
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=58.70 E-value=31 Score=21.72 Aligned_cols=54 Identities=9% Similarity=0.183 Sum_probs=37.6
Q ss_pred EEcCCCCCccHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~V~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+-.+...++..++++.++. || .|..|.........--|||.+....+|.....
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ 81 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAA 81 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 33446678899999888875 55 67777665443334569999998888876544
No 409
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=58.52 E-value=32 Score=21.83 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=26.1
Q ss_pred eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCc
Q 024276 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
|..+.+. ...+||.||++...++...++..+.|.
T Consensus 40 i~~v~vP--~~fPGYVfVe~~~~~~~~~~I~~t~gV 73 (92)
T 3lpe_A 40 VYSILAS--ESLKGYVLVEAETKGDVEELIKGMPRV 73 (92)
T ss_dssp EEEEEEC--TTSTTEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEEe--cccCCEEEEEEecchhHHHHHHCCCCc
Confidence 5555543 246899999999999999999877663
No 410
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=52.83 E-value=32 Score=20.09 Aligned_cols=56 Identities=7% Similarity=-0.019 Sum_probs=42.1
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhc
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..++.|.++....=...|.+.+.. ..|..+.+... .+.+.|+|.+.++...+|..+
T Consensus 6 ~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~~ 61 (73)
T 3fry_A 6 KIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEAA 61 (73)
T ss_dssp EEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHHT
T ss_pred EEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHHc
Confidence 457889999877667888888888 77888887433 467788888667777777743
No 411
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.74 E-value=8.6 Score=22.78 Aligned_cols=20 Identities=30% Similarity=0.649 Sum_probs=13.7
Q ss_pred cceEEEEEecCCCCCcEEEEEECCH
Q 024276 31 GRILDIELKIPPRPPCYCFVEFENA 55 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~ 55 (270)
|.|..|.. .+..|||.|.+.
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~ 47 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDD 47 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTT
T ss_pred eEEEEEec-----CCcEEEEEEccC
Confidence 56655543 267899999864
No 412
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=51.62 E-value=38 Score=21.26 Aligned_cols=54 Identities=13% Similarity=0.112 Sum_probs=36.8
Q ss_pred EEcCCCCCccHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 10 YVGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~V~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
|+-.+.+.+|..+|++.++. || +|..|.........--|||.+...++|.....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 34456778999999888875 55 67777665443334569999988877655443
No 413
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=45.64 E-value=26 Score=23.11 Aligned_cols=35 Identities=23% Similarity=0.332 Sum_probs=27.2
Q ss_pred eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcc
Q 024276 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
|..+.. .+..+||-|||=.++.++..|+..+.+..
T Consensus 41 I~Si~~--~~~lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 41 IKSVVA--PEHVKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCEEEE--CTTCCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred eEEEEe--cCCCceEEEEEeCCHHHHHHHHhccccee
Confidence 555444 34469999999999999999999876654
No 414
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=44.82 E-value=12 Score=22.77 Aligned_cols=21 Identities=29% Similarity=0.604 Sum_probs=14.1
Q ss_pred cceEEEEEecCCCCCcEEEEEECCHH
Q 024276 31 GRILDIELKIPPRPPCYCFVEFENAR 56 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~~ 56 (270)
|.|..|... +..|||.|.+..
T Consensus 45 GTI~kV~~~-----~e~ClV~F~D~S 65 (79)
T 2m0o_A 45 GTIKKVDSA-----REVCLVQFEDDS 65 (79)
T ss_dssp EEEEEEETT-----TTEEEEEETTSC
T ss_pred EEEEEeccC-----CCEEEEEEcCCC
Confidence 566655432 678999998743
No 415
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=43.95 E-value=14 Score=21.94 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=9.4
Q ss_pred CcEEEEEECCH
Q 024276 45 PCYCFVEFENA 55 (270)
Q Consensus 45 ~g~afV~f~~~ 55 (270)
.+.|+|.|.+.
T Consensus 41 ~gtC~V~F~D~ 51 (66)
T 2eqj_A 41 KQSCFIIFEDS 51 (66)
T ss_dssp TTEEEEEETTT
T ss_pred CcEEEEEEccC
Confidence 68999999864
No 416
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=43.04 E-value=17 Score=28.56 Aligned_cols=32 Identities=22% Similarity=0.240 Sum_probs=25.9
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEE
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
..+.|+|||..++..-|.+++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEE
Confidence 46799999999999999999986556665544
No 417
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=40.43 E-value=67 Score=20.18 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=41.3
Q ss_pred eEEEeCCCCCCCHHHHHHHhhh-cC-ceeEEEEeeCCCC-cEEEEEecChhhHHHHHHhc
Q 024276 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRKL 182 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~l 182 (270)
..|+-......+..+|++.++. |+ .|..+..+.-+.+ .-|+|.+....+|.....++
T Consensus 24 n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~ki 83 (86)
T 3j21_T 24 NKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAARL 83 (86)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHHS
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHhh
Confidence 4555567788999999999987 55 5666665554433 37999999988888766543
No 418
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=40.12 E-value=46 Score=28.08 Aligned_cols=59 Identities=24% Similarity=0.292 Sum_probs=40.9
Q ss_pred EEEcCCCCCc----cHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcccCCce
Q 024276 9 IYVGNLPSDI----REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYNFDGCR 74 (270)
Q Consensus 9 l~V~nl~~~~----t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~ 74 (270)
-+||||..-. ....+.++..+||+|..+.+- +.-+|-..+++.|+.++. -++..+.+++
T Consensus 17 PliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 17 PLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG------TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET------TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC------CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 3688876432 235677888899999888872 345777889999999987 3444444443
No 419
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=38.82 E-value=77 Score=22.06 Aligned_cols=51 Identities=16% Similarity=0.330 Sum_probs=34.2
Q ss_pred CCCCCccHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-+...++..+|.+.++. || .|..|..+......--|||.+....+|.....
T Consensus 85 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 137 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIAN 137 (142)
T ss_dssp EECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHH
Confidence 35567888888877765 44 67777665433334469999988777766443
No 420
>2zkr_s 60S ribosomal protein L23A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=37.90 E-value=82 Score=22.33 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=35.6
Q ss_pred EcCCCCCccHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 11 VGNLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 11 V~nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+-.+...++.-+|.+.++. || .|..|..+......--|||.+...++|.....
T Consensus 97 vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~~~KKAiVtL~~g~~aid~~~ 151 (156)
T 2zkr_s 97 VFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYVRLAPDYDALDVAN 151 (156)
T ss_dssp EEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECSSSCEEEEEEECTTSCHHHHHH
T ss_pred EEEEECCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEECCCCcHHHHHH
Confidence 3345668888888887775 45 67777665433234569999988877655544
No 421
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=37.61 E-value=79 Score=22.21 Aligned_cols=51 Identities=8% Similarity=0.135 Sum_probs=34.2
Q ss_pred CCCCCccHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
-+...++..+|.+.++. |+ .|..|..+......--|||.+....+|.....
T Consensus 93 ~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAn 145 (150)
T 4a17_R 93 YVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLAN 145 (150)
T ss_dssp EECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHH
Confidence 35567888888877775 44 66777665433334569999988777766443
No 422
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=37.60 E-value=30 Score=31.00 Aligned_cols=53 Identities=21% Similarity=0.273 Sum_probs=39.1
Q ss_pred CCCCCccHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhc
Q 024276 13 NLPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
..+.+.+--||..+|- .+|-|..+.|... .....+++|.|.+.++|..|+..+
T Consensus 350 ~~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f~d~~~a~~av~~i 408 (658)
T 4bby_A 350 QGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAFPNFEQGVACLREI 408 (658)
T ss_dssp CCSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCccccccccccCCchhhhhhHHHH
Confidence 3445555457888884 6889999888442 334567899999999999988765
No 423
>2cs4_A Protein C12ORF2; GTP binding, ubiquitin fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=36.84 E-value=22 Score=22.89 Aligned_cols=22 Identities=23% Similarity=0.087 Sum_probs=15.7
Q ss_pred EcCCCCCccHHHHHHHhh-cccc
Q 024276 11 VGNLPSDIREYEVEDLFY-KYGR 32 (270)
Q Consensus 11 V~nl~~~~t~~~L~~~F~-~~G~ 32 (270)
|.+|.+.+|..||...+. ..|.
T Consensus 21 VsGvT~~TTC~DVV~aL~~~~G~ 43 (95)
T 2cs4_A 21 VCGVTEVTTCQEVVIALAQAIGR 43 (95)
T ss_dssp CSSBCSSSCHHHHHHHHHHHHSC
T ss_pred EECCCCCCcHHHHHHHHHhccCC
Confidence 347888899999988554 4454
No 424
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=36.48 E-value=29 Score=27.15 Aligned_cols=31 Identities=29% Similarity=0.423 Sum_probs=24.8
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEE
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
.-+.|+|||.+++...|.+++.. +.+..+.+
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~l 141 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVF 141 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEE
Confidence 46789999999999999999987 55554433
No 425
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=36.33 E-value=1.1e+02 Score=21.33 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=39.9
Q ss_pred eEEEeCCCCCCCHHHHHHHhhh-cC-ceeEEEEeeCCCC-cEEEEEecChhhHHHHHHh
Q 024276 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~ 181 (270)
..|+..+....+..+|++.++. |+ .|..+..+.-+.+ .-|||.+....+|.+....
T Consensus 80 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 80 NILVFQVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 4555567788899999988877 55 5666665554433 3799999888888776554
No 426
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=35.32 E-value=69 Score=22.58 Aligned_cols=51 Identities=16% Similarity=0.188 Sum_probs=33.8
Q ss_pred CCCCCccHHHHHHHhhc-cc-ceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 13 NLPSDIREYEVEDLFYK-YG-RILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 13 nl~~~~t~~~L~~~F~~-~G-~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
.+...++..+|.+.++. || .|..|..+......--|||.+....+|.....
T Consensus 95 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAn 147 (152)
T 3iz5_X 95 IVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVAN 147 (152)
T ss_dssp EECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHG
T ss_pred EEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHH
Confidence 34557777778776664 44 66777665443334569999998877776544
No 427
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=34.73 E-value=20 Score=27.73 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=25.1
Q ss_pred eEEEcCCCCCccHHHHHHHhhcccceEEEEE
Q 024276 8 TIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
-..|+|||..++...|.+++.....+..+.+
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~l 128 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHF 128 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEE
Confidence 4589999999999999999987666655544
No 428
>3iz5_X 60S ribosomal protein L23A (L23P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_X 2go5_4 2j37_4
Probab=34.48 E-value=1.2e+02 Score=21.36 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=39.1
Q ss_pred eEEEeCCCCCCCHHHHHHHhhh-cC-ceeEEEEeeCCCC-cEEEEEecChhhHHHHHHh
Q 024276 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~ 181 (270)
..|+..+....+..+|++.++. |+ .|..+..+.-+.+ .-|||.+....+|.+....
T Consensus 90 N~~vF~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 148 (152)
T 3iz5_X 90 NTLVFIVDLKADKKKIKAAVKKMYDIQAKKVNTLIRPDGKKKAYVKLTPDYDALDVANK 148 (152)
T ss_dssp SEEEEEECSSCCSHHHHHHHHHHHTCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHGG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCcceEEEeeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 4555556778888889888877 55 5666665554433 3799999988888776543
No 429
>4a17_R RPL23A, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_R 4a1c_R 4a1e_R
Probab=33.95 E-value=1.2e+02 Score=21.26 Aligned_cols=56 Identities=13% Similarity=0.079 Sum_probs=39.6
Q ss_pred eEEEeCCCCCCCHHHHHHHhhh-cC-ceeEEEEeeCCCC-cEEEEEecChhhHHHHHHh
Q 024276 126 RVIVRGLPSSASWQDLKDHMRK-AG-DVCFAEVSRDSEG-TYGVVDYTNPEDMKYAIRK 181 (270)
Q Consensus 126 ~l~v~nl~~~~~~~~l~~~f~~-~g-~v~~~~~~~~~~~-g~afv~f~~~~~a~~a~~~ 181 (270)
..|+..+....+..+|++.++. |+ .|..+..+.-+.+ .-|||.+....+|.+....
T Consensus 88 N~~vF~Vd~kAnK~qIK~AVEklf~VkV~kVNTl~~p~g~KKAyV~La~~~dAldvAnk 146 (150)
T 4a17_R 88 NTMVFYVHNRSTKPQIKSAFEKLYNVKVRSVNTLNTITGNKKAYIRLAADSDSLTLANK 146 (150)
T ss_dssp SEEEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSCEEEEEEECSSSCHHHHHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCcEEEEEEcCCCCcHHHHHHh
Confidence 4555556788899999988877 55 5666665554433 3799999888888776554
No 430
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=33.34 E-value=42 Score=21.79 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=18.7
Q ss_pred ccHHHHHHHhhcccceEEEEEe
Q 024276 18 IREYEVEDLFYKYGRILDIELK 39 (270)
Q Consensus 18 ~t~~~L~~~F~~~G~v~~~~~~ 39 (270)
.+++.|.++|+.+|.|..-.+.
T Consensus 4 ~~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 4 PILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp THHHHHHHHHGGGSCCEEEEET
T ss_pred hHHHHHHHHHhccCCceEeecc
Confidence 4678899999999999987775
No 431
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=33.26 E-value=41 Score=25.89 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=24.2
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEE
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIEL 38 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~ 38 (270)
..+.|+|||+.++...|.+++.....+..+.+
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~ 122 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHF 122 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEE
Confidence 35889999999999999998886444544433
No 432
>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A
Probab=33.03 E-value=85 Score=19.16 Aligned_cols=57 Identities=11% Similarity=0.138 Sum_probs=40.5
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECC----HHHHHHHHHhc
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFEN----ARDAEDAIRGR 65 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~----~~~a~~A~~~l 65 (270)
..++.|.++....-...|...+...-.|..+.+-.. .+.+.|.|.. .++...++..+
T Consensus 4 ~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~---~~~~~V~~~~~~~~~~~i~~~i~~~ 64 (90)
T 2g9o_A 4 TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLE---NRSAIVVYNASSVTPESLRKAIEAV 64 (90)
T ss_dssp EEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETT---TTEEEEEECCSSCCTHHHHHHHHTT
T ss_pred EEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEcc---CCEEEEEECCCCCCHHHHHHHHHhc
Confidence 456888888766556778888888877888887544 4678888853 45566667644
No 433
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=32.73 E-value=28 Score=20.00 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=13.6
Q ss_pred cceEEEEEecCCCCCcEEEEEECCHH
Q 024276 31 GRILDIELKIPPRPPCYCFVEFENAR 56 (270)
Q Consensus 31 G~v~~~~~~~~~~~~g~afV~f~~~~ 56 (270)
|+|..|.. ....|+|.|.+..
T Consensus 22 GtI~~V~~-----~~~~clV~F~D~s 42 (58)
T 4hcz_A 22 GTIKKVDS-----AREVCLVQFEDDS 42 (58)
T ss_dssp EEEEEEET-----TTTEEEEEETTSC
T ss_pred EEEEEEec-----CCCEEEEEEcCCC
Confidence 55555532 2568999998753
No 434
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=32.71 E-value=43 Score=24.93 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=25.7
Q ss_pred CCCCcEEEEEECCHHHHHHHHHhcCCcccC
Q 024276 42 PRPPCYCFVEFENARDAEDAIRGRDGYNFD 71 (270)
Q Consensus 42 ~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 71 (270)
+..+||-|||=.++.++..|+..+.+.+..
T Consensus 146 d~lkGYIyVEA~~~~~V~~ai~Gi~~vy~~ 175 (200)
T 2exu_A 146 DNYTGRIYIEAPKQSVIEKFCNGVPDIYIS 175 (200)
T ss_dssp TTSTTEEEEECSCHHHHHHHHTTCTTEEEE
T ss_pred CCCcEEEEEEECCHHHHHHHHhhhhhhhcC
Confidence 346999999999999999999999876443
No 435
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=32.15 E-value=25 Score=15.76 Aligned_cols=14 Identities=36% Similarity=0.563 Sum_probs=10.7
Q ss_pred ccHHHHHHHhhccc
Q 024276 18 IREYEVEDLFYKYG 31 (270)
Q Consensus 18 ~t~~~L~~~F~~~G 31 (270)
+.-.+++.+|.++|
T Consensus 12 taikqvkklfkkwg 25 (26)
T 1ytr_A 12 TAIKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHcC
Confidence 34578899999887
No 436
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=31.57 E-value=35 Score=29.51 Aligned_cols=41 Identities=22% Similarity=0.386 Sum_probs=28.7
Q ss_pred HHHHHhh--cccceEEEEEecCCCC--CcEEEEEECCHHHHHHHH
Q 024276 22 EVEDLFY--KYGRILDIELKIPPRP--PCYCFVEFENARDAEDAI 62 (270)
Q Consensus 22 ~L~~~F~--~~G~v~~~~~~~~~~~--~g~afV~f~~~~~a~~A~ 62 (270)
+|..+|. .+|-|..+.+.....+ ...+++.|.+.++|..|+
T Consensus 217 ~l~~l~~g~~lGiVt~~~l~l~p~p~~~~~~~~~f~~~~~~~~~~ 261 (520)
T 1wvf_A 217 TLDGMFTQANYGICTKMGFWLMPKPPVFKPFEVIFEDEADIVEIV 261 (520)
T ss_dssp CCHHHHTTSSSCEEEEEEEECEECCSEEEEEEEEECCGGGHHHHH
T ss_pred chhhhccCCceEEEEEEEEEEEecCCeEEEEEEEeCCHHHHHHHH
Confidence 3567773 6899999988543333 356789999988876644
No 437
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=31.51 E-value=35 Score=28.54 Aligned_cols=48 Identities=19% Similarity=0.292 Sum_probs=32.2
Q ss_pred EEcCCCCC---ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 10 YVGNLPSD---IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~V~nl~~~---~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+|||+..- -....+.++..+||+|..+.+- +.-+|-..+++.++.++.
T Consensus 20 ~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g------~~~~vvv~~p~~i~~vl~ 70 (479)
T 3tbg_A 20 GLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA------WTPVVVLNGLAAVREALV 70 (479)
T ss_dssp TTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET------TEEEEEEEHHHHHHHHHT
T ss_pred cccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC------CeeEEEECCHHHHHHHHH
Confidence 35665422 2345577888899999888762 233566678888888875
No 438
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=31.15 E-value=74 Score=17.91 Aligned_cols=54 Identities=9% Similarity=0.111 Sum_probs=39.2
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEC---CHHHHHHHHH
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE---NARDAEDAIR 63 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~---~~~~a~~A~~ 63 (270)
.++.|.|+.-..-...+.+.+.....|..+.+... .+-+.|+|. +.++...++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~ 60 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVE 60 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEECTTCCHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCHHHHHHHHH
Confidence 46888888777667888999998877888887543 457788884 3445555665
No 439
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=31.09 E-value=55 Score=24.92 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=44.9
Q ss_pred CCeEEEcCCCCCcc--HHHHHHHhhc-----ccc--------eEEEEEec---C--CCCCcEEEEEECCHHH---HHHHH
Q 024276 6 SRTIYVGNLPSDIR--EYEVEDLFYK-----YGR--------ILDIELKI---P--PRPPCYCFVEFENARD---AEDAI 62 (270)
Q Consensus 6 s~~l~V~nl~~~~t--~~~L~~~F~~-----~G~--------v~~~~~~~---~--~~~~g~afV~f~~~~~---a~~A~ 62 (270)
-+.|.|-|||.... +.-+..+|.. |.. |..+.-.. + ......-.|.|....+ ..+|.
T Consensus 52 r~NIRIiGVPEgee~~~kgaenlf~eII~EnfPnL~ke~diqV~ea~Rsp~~~~~kr~tPR~IIvK~~~~~~KErILkaa 131 (233)
T 2yko_A 52 RPNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAA 131 (233)
T ss_dssp TTEEEEESCCCCTTCCHHHHHHHHHHHHHHHCTTCC---CCCEEEEEEC-------CCSCCCEEEEESSHHHHHHHHHHH
T ss_pred ccceeEeecCCCcccccccHHHHHHHHHHHhCCCCccccceeeechhcCCCCCCCCCCCCCeEEEEecccccHHHHHHHH
Confidence 36899999999865 4434444442 321 23332211 1 1123456777776555 44455
Q ss_pred HhcCCcccCCceEEEEecCC
Q 024276 63 RGRDGYNFDGCRLRVELAHG 82 (270)
Q Consensus 63 ~~l~~~~~~g~~l~v~~~~~ 82 (270)
.....+.+.|.+|.+...-+
T Consensus 132 R~k~~vtykG~pIrlsaDfS 151 (233)
T 2yko_A 132 REKGRVTLKGKPIRLTVDLS 151 (233)
T ss_dssp HTTSCEEETTEEEEEEECCC
T ss_pred HHhcccccCCCceEEeCCCC
Confidence 54567889999999887653
No 440
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=29.70 E-value=83 Score=18.04 Aligned_cols=57 Identities=12% Similarity=0.165 Sum_probs=41.9
Q ss_pred CCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEC----CHHHHHHHHHhc
Q 024276 6 SRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE----NARDAEDAIRGR 65 (270)
Q Consensus 6 s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~----~~~~a~~A~~~l 65 (270)
..++.|.|+....=...|.+.+.....|..+.+... .+.+.|+|. +.++...++..+
T Consensus 3 ~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~~ 63 (74)
T 3dxs_X 3 KIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALL---QNRADVVFDPNLVKEEDIKEEIEDA 63 (74)
T ss_dssp EEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGG---GTEEEEEECTTTCCHHHHHHHHHHH
T ss_pred EEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHHC
Confidence 357889999877667788889988877888877443 457889985 556677777743
No 441
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=28.65 E-value=41 Score=25.84 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=24.1
Q ss_pred CeEEEcCCCCCccHHHHHHHhhcccceEEEE
Q 024276 7 RTIYVGNLPSDIREYEVEDLFYKYGRILDIE 37 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~ 37 (270)
..+.|+|||..++...|.+++.....+..+.
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~~~~~~~~ 126 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNKDCVPLAV 126 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTGGGCSEEE
T ss_pred CcEEEEECchhccHHHHHHHHhcCCCCceEE
Confidence 3588999999999999999998654444433
No 442
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=27.95 E-value=50 Score=27.03 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=19.6
Q ss_pred eEEEcCCCCCccHHHHHHHhhc
Q 024276 8 TIYVGNLPSDIREYEVEDLFYK 29 (270)
Q Consensus 8 ~l~V~nl~~~~t~~~L~~~F~~ 29 (270)
...|+|||.+++..-|.+++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4789999999999999998875
No 443
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=27.38 E-value=81 Score=20.47 Aligned_cols=73 Identities=16% Similarity=0.228 Sum_probs=41.7
Q ss_pred CeEEEcCCCCCccHHH--HHHHhh----c----cc-----ceEEEEEecC----C-CCCcEEEEEECCHHH---HHHHHH
Q 024276 7 RTIYVGNLPSDIREYE--VEDLFY----K----YG-----RILDIELKIP----P-RPPCYCFVEFENARD---AEDAIR 63 (270)
Q Consensus 7 ~~l~V~nl~~~~t~~~--L~~~F~----~----~G-----~v~~~~~~~~----~-~~~g~afV~f~~~~~---a~~A~~ 63 (270)
+.|.|-+||..-.+.. +..||. . .+ .|..+.-... . .....-.|.|....+ ..+|..
T Consensus 4 ~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILkaar 83 (100)
T 2w7a_A 4 GNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRAAR 83 (100)
T ss_dssp TEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHHHH
T ss_pred cceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHHHH
Confidence 6799999998733222 333333 2 23 2444433211 1 123457777776554 455555
Q ss_pred hcCCcccCCceEEEEe
Q 024276 64 GRDGYNFDGCRLRVEL 79 (270)
Q Consensus 64 ~l~~~~~~g~~l~v~~ 79 (270)
....+.+.|.+|.+..
T Consensus 84 ~k~~vtykg~pirlsa 99 (100)
T 2w7a_A 84 EKGRVTLKGKPIRLTV 99 (100)
T ss_dssp HHCCEEETTEEEEEEE
T ss_pred HhCceeeCCcceeecC
Confidence 5667889999998864
No 444
>3fjv_A Uncharacterized novel protein; YP_111841.1, novel protein of unknown function; HET: MSE; 1.90A {Burkholderia pseudomallei K96243}
Probab=26.04 E-value=65 Score=23.76 Aligned_cols=47 Identities=15% Similarity=0.132 Sum_probs=32.4
Q ss_pred cHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCcc
Q 024276 19 REYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGYN 69 (270)
Q Consensus 19 t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~ 69 (270)
.+++|.+....|.+.. ...+.-+..-||+|.++++....+..|.|+.
T Consensus 66 ~~~~I~~Ei~aYnpLi----P~~~~l~ATl~IE~~d~~er~~~L~~L~Gie 112 (194)
T 3fjv_A 66 DEDGIQAELDAYLPLV----PDGSNLKATLQIEYENETQRRAALARLVGIE 112 (194)
T ss_dssp SHHHHHHHHHHHGGGC----CCSSEEEEEEEECCSSHHHHHHHHHHTTTGG
T ss_pred CHHHHHHHHHHhcccC----CCCCcEEEEEEEEcCCHHHHHHHHHHhcCcc
Confidence 4566666666665421 1112335678999999999999999999854
No 445
>3lfj_A Manxb, phosphotransferase system, mannose/fructose/N- acetylgalactosamine-specific component...; manxb PTS; 1.56A {Thermoanaerobacter tengcongensis}
Probab=25.50 E-value=1.6e+02 Score=21.55 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=25.3
Q ss_pred CCcEEEEEECCHHHHHHHHHhcCCcccCCceEEEEecC
Q 024276 44 PPCYCFVEFENARDAEDAIRGRDGYNFDGCRLRVELAH 81 (270)
Q Consensus 44 ~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~~~ 81 (270)
...-.||-|.++++|.++++ .|..| ..|.|.-..
T Consensus 96 ~~~~v~il~k~p~d~~~lve--~Gv~i--~~vNvG~m~ 129 (187)
T 3lfj_A 96 VEEKVFLLFKNIDTCKRVMD--GGLPI--TTLNIGGVA 129 (187)
T ss_dssp SCEEEEEEESSHHHHHHHHH--TTCCC--SEEEEEEBC
T ss_pred CCceEEEEECCHHHHHHHHH--cCCCC--CEEEECCCC
Confidence 35679999999999999998 45555 366666544
No 446
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=25.02 E-value=1.2e+02 Score=25.36 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=30.6
Q ss_pred EEcCCCCC--ccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCHHHHHHHHH
Q 024276 10 YVGNLPSD--IREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENARDAEDAIR 63 (270)
Q Consensus 10 ~V~nl~~~--~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~ 63 (270)
+|||+..- -....+.++..+||+|..+.+ .+.-+|-..+++.++..+.
T Consensus 19 ~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~------g~~~~vvv~dp~~i~~il~ 68 (507)
T 3pm0_A 19 LIGNAAAVGQAAHLSFARLARRYGDVFQIRL------GSCPIVVLNGERAIHQALV 68 (507)
T ss_dssp ---------CCHHHHHHHHHHHHCSEEEEEE------TTEEEEEECSHHHHHHHHT
T ss_pred eeCchhhcCccHHHHHHHHHHHhCCEEEEEE------CCccEEEECCHHHHHHHHH
Confidence 56766432 224567788889999988876 2456788899999999885
No 447
>2nn4_A Hypothetical protein YQGQ; novel fold, PFAM:DUF910, structural genomics, PSI-2, protein structure initiative; 2.10A {Bacillus subtilis} SCOP: a.272.1.1
Probab=24.56 E-value=19 Score=21.83 Aligned_cols=18 Identities=28% Similarity=0.606 Sum_probs=13.8
Q ss_pred cHHHHHHHhhcccceEEE
Q 024276 19 REYEVEDLFYKYGRILDI 36 (270)
Q Consensus 19 t~~~L~~~F~~~G~v~~~ 36 (270)
|-=||.+++.+||.|+.+
T Consensus 4 tlYDVqQLLK~fG~~IY~ 21 (72)
T 2nn4_A 4 TFYDVQQLLKTFGHIVYF 21 (72)
T ss_dssp SHHHHHHHHHTTTCCCCC
T ss_pred cHHHHHHHHHHCCEEEEe
Confidence 445899999999977653
No 448
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=24.19 E-value=65 Score=22.53 Aligned_cols=34 Identities=35% Similarity=0.353 Sum_probs=26.3
Q ss_pred eEEEEEecCCCCCcEEEEEECCHHHHHHHHHhcCCc
Q 024276 33 ILDIELKIPPRPPCYCFVEFENARDAEDAIRGRDGY 68 (270)
Q Consensus 33 v~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~ 68 (270)
|..+.+.. ..+||.||++...++...++..+.|.
T Consensus 33 i~~v~vp~--~fPGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 33 IYAILAPS--RVKGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CCEEEECT--TCCSEEEEEESSHHHHHHHHTTCTTE
T ss_pred EEEEEeec--CCCcEEEEEEEchHHHHHHHhCCCCE
Confidence 55555432 35899999999999999999988774
No 449
>2gu3_A YPMB protein; APC1927, structural genomics, PSI, protein structure initiat midwest center for structural genomics, MCSG, unknown funct; 1.74A {Bacillus subtilis subsp} SCOP: d.17.1.6 d.17.1.6
Probab=24.07 E-value=83 Score=21.64 Aligned_cols=45 Identities=11% Similarity=0.157 Sum_probs=30.1
Q ss_pred EcCCCCCccHHHHHHHhh-ccc--ceEEEEE-ec-----------C-CCCCcEEEEEECCH
Q 024276 11 VGNLPSDIREYEVEDLFY-KYG--RILDIEL-KI-----------P-PRPPCYCFVEFENA 55 (270)
Q Consensus 11 V~nl~~~~t~~~L~~~F~-~~G--~v~~~~~-~~-----------~-~~~~g~afV~f~~~ 55 (270)
|-.+..-++++++.+++. .++ .|..+.+ +. + ....+|.|+.|.+-
T Consensus 68 v~~~~~GiSe~~a~~~v~~~~~~~~I~~v~lG~~~~~pVWEV~Y~~~~~~~~Y~~~~F~~G 128 (136)
T 2gu3_A 68 SKEAKEGISEDKAAKIIKDEGLVSKQKEVHLAREGNVLLWEVTYLDKEGQYSLSYVDFTTG 128 (136)
T ss_dssp EEEGGGSCCHHHHHHHHHHTTCCSEEEEEEEEEETTEEEEEEEEECTTSCEEEEEEETTTC
T ss_pred EEEHhhCCCHHHHHHHHHHhCCccceeEEeeeeECCEEEEEEEEEccCCcEEEEEEEeeCC
Confidence 555666799999999995 344 6777666 11 1 33457888888753
No 450
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=23.65 E-value=29 Score=16.81 Aligned_cols=19 Identities=42% Similarity=0.541 Sum_probs=12.1
Q ss_pred CCCeEEEcCCCCCccHHHHHHHhh
Q 024276 5 FSRTIYVGNLPSDIREYEVEDLFY 28 (270)
Q Consensus 5 ~s~~l~V~nl~~~~t~~~L~~~F~ 28 (270)
.-++|+|++-| ++|+++-+
T Consensus 4 qvrtiwvggtp-----eelkklke 22 (36)
T 2ki0_A 4 QVRTIWVGGTP-----EELKKLKE 22 (36)
T ss_dssp SCCCCCBCCCH-----HHHHHHHH
T ss_pred eeEEEEecCCH-----HHHHHHHH
Confidence 35678888754 66666544
No 451
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=23.18 E-value=53 Score=28.97 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=33.7
Q ss_pred CCCCccHHHHHHHhh----cccceEEEEEecCC--CCCcEEEEEECCHHHHHHHHHhcC
Q 024276 14 LPSDIREYEVEDLFY----KYGRILDIELKIPP--RPPCYCFVEFENARDAEDAIRGRD 66 (270)
Q Consensus 14 l~~~~t~~~L~~~F~----~~G~v~~~~~~~~~--~~~g~afV~f~~~~~a~~A~~~l~ 66 (270)
++.+.+.-+|..+|- .+|-|..+.+.... .....+++.|.+.++|..|+..+.
T Consensus 281 ~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~~~~~a~~~~~~~~ 339 (584)
T 2uuu_A 281 GARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFPTFAHAVSALQQIR 339 (584)
T ss_dssp ------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEESSHHHHHHHHHHHH
T ss_pred ccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcCCHHHHHHHHHHHH
Confidence 444434446777664 56789998884432 234678899999999999887653
No 452
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=23.06 E-value=52 Score=20.39 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=16.9
Q ss_pred cCCCCCccHHHHHHHhhcc
Q 024276 12 GNLPSDIREYEVEDLFYKY 30 (270)
Q Consensus 12 ~nl~~~~t~~~L~~~F~~~ 30 (270)
|.|+..+|+++|.+++.+.
T Consensus 50 Gqi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRV 68 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788899999999999975
No 453
>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A
Probab=22.40 E-value=1.1e+02 Score=17.11 Aligned_cols=60 Identities=15% Similarity=0.161 Sum_probs=41.4
Q ss_pred CCCCCCCeEEEcCCCCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEECCH----HHHHHHHHh
Q 024276 1 MSGRFSRTIYVGNLPSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENA----RDAEDAIRG 64 (270)
Q Consensus 1 m~~~~s~~l~V~nl~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~~~----~~a~~A~~~ 64 (270)
|+ ....++.|.++....-...|...+.....|..+.+... .+.+.|.|... +....++..
T Consensus 1 m~-~~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~ 64 (75)
T 1yjr_A 1 MG-DGVLELVVRGMTCASCVHKIESSLTKHRGILYCSVALA---TNKAHIKYDPEIIGPRDIIHTIES 64 (75)
T ss_dssp CC-CCCEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETT---TTEEEEEECTTTTHHHHHHHHHHH
T ss_pred CC-ceEEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHH
Confidence 43 45567899999777666778888888877888877543 46788888642 334445553
No 454
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=22.39 E-value=45 Score=25.42 Aligned_cols=68 Identities=13% Similarity=0.213 Sum_probs=43.2
Q ss_pred CCCccHHHHHHHhhcccceEEEEEecCCCCCcEEEEEEC---CHHHHHHH---HHhcCCccc---CCceEEEEecCC
Q 024276 15 PSDIREYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE---NARDAEDA---IRGRDGYNF---DGCRLRVELAHG 82 (270)
Q Consensus 15 ~~~~t~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~---~~~~a~~A---~~~l~~~~~---~g~~l~v~~~~~ 82 (270)
..++...+|.++|..++.+..+.+..++.-+|..-+.+. +.+++..+ +-.++|+.+ .|..+.|.+...
T Consensus 10 sl~f~~~~i~~vl~~la~~~g~n~vvd~~V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~ 86 (241)
T 3ezj_A 10 TANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSA 86 (241)
T ss_dssp CCEEEEEEHHHHHHHHHHHHTCEEEC---CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC--
T ss_pred EEEeCCCCHHHHHHHHHHHhCCeEEECCCCcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHH
Confidence 344555668888888888877778766655676666665 35545443 445888765 588999988654
No 455
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=22.38 E-value=70 Score=27.33 Aligned_cols=52 Identities=31% Similarity=0.418 Sum_probs=35.8
Q ss_pred CCCCccHHHHHHHhh----cccceEEEEEecC--CCCCcEEEEEECCHHHHHHHHHhc
Q 024276 14 LPSDIREYEVEDLFY----KYGRILDIELKIP--PRPPCYCFVEFENARDAEDAIRGR 65 (270)
Q Consensus 14 l~~~~t~~~L~~~F~----~~G~v~~~~~~~~--~~~~g~afV~f~~~~~a~~A~~~l 65 (270)
+.++.+.-+|..+|- .+|-|..+.+... ......+++.|.+.++|..|+..+
T Consensus 194 ~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 194 LKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp CSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 344444446777764 5678888888432 333467899999999999988765
No 456
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=22.22 E-value=57 Score=16.74 Aligned_cols=15 Identities=13% Similarity=0.231 Sum_probs=12.4
Q ss_pred CCccHHHHHHHhhcc
Q 024276 16 SDIREYEVEDLFYKY 30 (270)
Q Consensus 16 ~~~t~~~L~~~F~~~ 30 (270)
.+++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 468999999999864
No 457
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.02 E-value=92 Score=18.12 Aligned_cols=14 Identities=29% Similarity=0.581 Sum_probs=10.4
Q ss_pred CCCcEEEEEECCHH
Q 024276 43 RPPCYCFVEFENAR 56 (270)
Q Consensus 43 ~~~g~afV~f~~~~ 56 (270)
..+..|||.|.+..
T Consensus 33 ~~~~~ClV~FeD~s 46 (63)
T 2e5q_A 33 SSKQSCLVTFEDNS 46 (63)
T ss_dssp STTSEEEEEETTSC
T ss_pred cCCCEEEEEEccCc
Confidence 34678999998743
No 458
>2ns6_A Mobilization protein A; nickase, 5-strand antiparallel beta sheet, metalloenzyme, hydrolase; 2.10A {Pseudomonas aeruginosa}
Probab=21.27 E-value=1.6e+02 Score=21.43 Aligned_cols=44 Identities=9% Similarity=-0.007 Sum_probs=25.9
Q ss_pred EEcCCCCCccHHHHHH--------HhhcccceEEEEEecCCCCCcEEEEEEC
Q 024276 10 YVGNLPSDIREYEVED--------LFYKYGRILDIELKIPPRPPCYCFVEFE 53 (270)
Q Consensus 10 ~V~nl~~~~t~~~L~~--------~F~~~G~v~~~~~~~~~~~~g~afV~f~ 53 (270)
++=-||..++.++-.+ +|..+|-|.++.|+.++.....|-|-|.
T Consensus 74 ~~iALP~EL~~eq~~~L~~~f~~~~~~~~G~~~d~AIH~~~~~NpHaHim~t 125 (185)
T 2ns6_A 74 VEFALPVELTLDQQKALASEFAQHLTGAERLPYTLAIHAGGGENPHCHLMIS 125 (185)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHTTTTCCEEEEEEEETTTEEEEEEEEC
T ss_pred EEEECCccCCHHHHHHHHHHHHHHHHHhcCCEEEEEEEcCCCCCceEEEEEe
Confidence 3446899988776443 4455677788877653322334444443
No 459
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=20.71 E-value=65 Score=20.00 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=16.6
Q ss_pred cCCCCCccHHHHHHHhhcc
Q 024276 12 GNLPSDIREYEVEDLFYKY 30 (270)
Q Consensus 12 ~nl~~~~t~~~L~~~F~~~ 30 (270)
|.|+..+++++|.+++.+.
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 5788899999999999875
No 460
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=20.43 E-value=59 Score=19.53 Aligned_cols=25 Identities=16% Similarity=0.177 Sum_probs=17.7
Q ss_pred EECCHHHHHHHHHhcCCcccCCceEEEE
Q 024276 51 EFENARDAEDAIRGRDGYNFDGCRLRVE 78 (270)
Q Consensus 51 ~f~~~~~a~~A~~~l~~~~~~g~~l~v~ 78 (270)
-|.+.+.|+.....|... |-+..|.
T Consensus 16 af~~~~~A~~~~~~L~~~---g~~~~i~ 40 (79)
T 1x60_A 16 AFKVKANADSLASNAEAK---GFDSIVL 40 (79)
T ss_dssp EESCHHHHHHHHHHHHHH---TCCEEEE
T ss_pred EcCCHHHHHHHHHHHHhC---CCCeEEe
Confidence 489999999998877543 4444443
No 461
>4ar0_A Type IV pilus biogenesis and competence protein P; transport, secretin type II secretion system; NMR {Neisseria meningitidis}
Probab=20.25 E-value=40 Score=23.01 Aligned_cols=62 Identities=6% Similarity=0.086 Sum_probs=40.9
Q ss_pred HHHHHHHhhcccceEEEEEecCCCCCcEEEEEEC--CHHHHHHHHHhcCCccc--CCceEEEEecC
Q 024276 20 EYEVEDLFYKYGRILDIELKIPPRPPCYCFVEFE--NARDAEDAIRGRDGYNF--DGCRLRVELAH 81 (270)
Q Consensus 20 ~~~L~~~F~~~G~v~~~~~~~~~~~~g~afV~f~--~~~~a~~A~~~l~~~~~--~g~~l~v~~~~ 81 (270)
..+|+++|...+.+..+.++.+..-.|-.-|.+. ..++|..++-.++|..+ .|..|.|.+..
T Consensus 40 da~i~~vl~~la~~tg~NiV~d~~V~G~VTl~l~~v~~~~al~~iL~~~gl~~~~~gnvi~I~p~~ 105 (128)
T 4ar0_A 40 DVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRD 105 (128)
T ss_dssp EEEHHHHHHHHHHTTCCEEEECTTCCCEEEEEEEEEEHHHHHHHHHHHHTEEEEEETTEEEEEEHH
T ss_pred CCCHHHHHHHHHHHHCCcEEEcCCCCceeeEeecCCCHHHHHHHHHHHcCceEEEECCEEEEEChH
Confidence 3456666766666666666555544555555554 45678877777888655 68889998764
No 462
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=20.01 E-value=48 Score=20.12 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=8.9
Q ss_pred CcEEEEEECCH
Q 024276 45 PCYCFVEFENA 55 (270)
Q Consensus 45 ~g~afV~f~~~ 55 (270)
+||+||+-.+-
T Consensus 12 KGfGFI~~~dG 22 (74)
T 2kcm_A 12 KKYGFIQGDDG 22 (74)
T ss_dssp TTEEEEEETTS
T ss_pred CCEEEEecCCC
Confidence 89999987653
Done!