BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024277
(270 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P05100|3MG1_ECOLI DNA-3-methyladenine glycosylase 1 OS=Escherichia coli (strain K12)
GN=tag PE=1 SV=1
Length = 187
Score = 91.3 bits (225), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 160 KRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREV 219
+RC WV+ DP Y A+HD EWGVP D KKLFE++ L G + L+W +L KR +R
Sbjct: 2 ERCGWVS--QDPLYIAYHDNEWGVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRAC 59
Query: 220 FVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR---QISKVGYP 268
F FDP+ V+ + E+ + A + K++AII NAR Q+ + G P
Sbjct: 60 FHQFDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGNARAYLQMEQNGEP 111
>sp|Q7VG78|GUAA_HELHP Probable GMP synthase [glutamine-hydrolyzing] OS=Helicobacter
hepaticus (strain ATCC 51449 / 3B1) GN=guaA PE=3 SV=1
Length = 1375
Score = 84.7 bits (208), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/115 (40%), Positives = 61/115 (53%), Gaps = 3/115 (2%)
Query: 154 DGSQTKKRCAWVTPNTDPC---YAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAIL 210
+G + K RCAW T + Y +HD EWG P+H+DKKLFE LVL G + L+W IL
Sbjct: 780 EGVREKVRCAWATDKDEAARKLYEDYHDTEWGEPLHEDKKLFEHLVLEGFQAGLSWITIL 839
Query: 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISKV 265
KR FR F FDP V+ +E K+ + + K+ A I NA+ V
Sbjct: 840 KKREAFRVAFDDFDPHIVANYDEDKIKELMRNEGIIRNRAKIEAAIINAKAFMAV 894
>sp|P44321|3MGA_HAEIN DNA-3-methyladenine glycosylase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tag PE=3 SV=1
Length = 185
Score = 75.5 bits (184), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/100 (37%), Positives = 55/100 (55%), Gaps = 2/100 (2%)
Query: 161 RCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVF 220
RC WV + Y +HD+EWG P D +KLFE + L G + L+W +L KR +RE F
Sbjct: 4 RCPWVGEQS--IYIDYHDKEWGKPEFDSQKLFEKICLEGQQAGLSWITVLKKRESYREAF 61
Query: 221 VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260
FDP ++K+ + A + + KL AI++NA+
Sbjct: 62 HQFDPKKIAKMTALDIDACMQNSGLIRHRAKLEAIVKNAK 101
>sp|Q5U2S3|ZUFSP_RAT Zinc finger with UFM1-specific peptidase domain protein OS=Rattus
norvegicus GN=Zufsp PE=2 SV=1
Length = 577
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 9/108 (8%)
Query: 158 TKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELL----VLSGALSELTWPAILSKR 213
T RC W++ D +++F D+ WG + + L L V S L ++ P I +
Sbjct: 334 TDVRCVWLSTVVDHFHSSFGDKGWGCGYRNFQMLLSSLLQNEVYSDCLKGMSVPCIPKIQ 393
Query: 214 HIFREVF-VGFDPIAVSKLNEK----KLLAAGSAASSLLSELKLRAII 256
+ + + GFDP S+LN K K +LL+ LK++ I
Sbjct: 394 SMIEDAWNEGFDPQGASQLNNKLQGTKAWIGACEIYTLLTSLKVKCRI 441
>sp|Q3T9Z9|ZUFSP_MOUSE Zinc finger with UFM1-specific peptidase domain protein OS=Mus
musculus GN=Zufsp PE=2 SV=2
Length = 577
Score = 39.7 bits (91), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 47/108 (43%), Gaps = 9/108 (8%)
Query: 158 TKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELL----VLSGALSELTWPAILSKR 213
T RC W++ D +++F D+ WG + + L L V L + P I +
Sbjct: 334 TDVRCVWLSTVVDHFHSSFGDKGWGCGYRNFQMLLSSLLQSDVYGDCLKGMAVPCIPKIQ 393
Query: 214 HIFREVF-VGFDPIAVSKLNEK----KLLAAGSAASSLLSELKLRAII 256
+ + + GFDP S+LN K K +LL+ L+++ I
Sbjct: 394 SMIEDAWNEGFDPQGASQLNNKLQGTKAWIGACEIYTLLTSLRVKCRI 441
>sp|Q3SWY8|ZUFSP_BOVIN Zinc finger with UFM1-specific peptidase domain protein OS=Bos
taurus GN=ZUFSP PE=2 SV=1
Length = 579
Score = 35.8 bits (81), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 158 TKKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSE----LTWPAILSKR 213
T R W++ D +++F D+ WG + + L L+ + A + ++ P I +
Sbjct: 336 TDVRRVWLSAGVDHFHSSFGDKGWGCGYRNFQMLLSSLLQNDAYDDSLKGMSVPCIPKIQ 395
Query: 214 HIFREVF-VGFDPIAVSKLNEK----KLLAAGSAASSLLSELKLRAII 256
+ + + GFDP S+LN+K K +LL+ L+++ I
Sbjct: 396 SMIEDAWKEGFDPQGASQLNDKLQGTKAWIGACEIYTLLTSLRIKCRI 443
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.126 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,104,583
Number of Sequences: 539616
Number of extensions: 3958147
Number of successful extensions: 11856
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 132
Number of HSP's that attempted gapping in prelim test: 11588
Number of HSP's gapped (non-prelim): 371
length of query: 270
length of database: 191,569,459
effective HSP length: 116
effective length of query: 154
effective length of database: 128,974,003
effective search space: 19861996462
effective search space used: 19861996462
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)