Query 024277
Match_columns 270
No_of_seqs 194 out of 1145
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 05:28:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2jg6_A DNA-3-methyladenine gly 100.0 4.3E-54 1.5E-58 375.6 11.0 108 159-268 1-108 (186)
2 2ofk_A 3-methyladenine DNA gly 100.0 5.3E-54 1.8E-58 374.0 11.5 108 159-268 1-108 (183)
3 2h56_A DNA-3-methyladenine gly 95.7 0.032 1.1E-06 48.8 8.0 90 169-264 29-120 (233)
4 1orn_A Endonuclease III; DNA r 95.5 0.1 3.4E-06 45.4 10.5 70 191-264 33-102 (226)
5 2yg9_A DNA-3-methyladenine gly 95.4 0.046 1.6E-06 47.7 7.8 90 169-264 38-128 (225)
6 3n0u_A Probable N-glycosylase/ 95.3 0.023 8E-07 49.9 5.6 67 187-262 46-113 (219)
7 2abk_A Endonuclease III; DNA-r 94.7 0.08 2.7E-06 45.3 7.1 71 190-264 28-98 (211)
8 1kea_A Possible G-T mismatches 94.5 0.16 5.5E-06 43.8 8.9 70 191-264 35-104 (221)
9 1kg2_A A/G-specific adenine gl 94.0 0.13 4.6E-06 44.4 7.2 69 191-264 30-98 (225)
10 4b21_A Probable DNA-3-methylad 93.5 0.34 1.2E-05 42.5 9.0 90 169-264 36-131 (232)
11 3s6i_A DNA-3-methyladenine gly 93.3 0.33 1.1E-05 42.4 8.6 89 169-264 25-120 (228)
12 3n5n_X A/G-specific adenine DN 92.4 0.55 1.9E-05 42.9 9.0 72 188-264 46-117 (287)
13 1pu6_A 3-methyladenine DNA gly 92.1 0.66 2.3E-05 40.1 8.7 72 191-264 30-106 (218)
14 3i0w_A 8-oxoguanine-DNA-glycos 91.8 1.1 3.6E-05 40.4 10.1 88 169-264 94-193 (290)
15 4e9f_A Methyl-CPG-binding doma 91.4 0.78 2.7E-05 38.4 8.2 68 192-263 32-99 (161)
16 3fsp_A A/G-specific adenine gl 90.9 1 3.5E-05 41.3 9.2 72 188-264 36-107 (369)
17 3fhg_A Mjogg, N-glycosylase/DN 90.5 0.78 2.7E-05 39.2 7.5 69 187-263 29-97 (207)
18 2jhn_A ALKA, 3-methyladenine D 87.9 1.2 4.1E-05 40.0 7.0 87 169-261 94-194 (295)
19 1mpg_A ALKA, 3-methyladenine D 86.6 3.4 0.00012 36.6 9.2 78 181-264 103-191 (282)
20 2d3d_A VTS1 protein; RNA bindi 86.3 1.2 4.1E-05 34.7 5.3 49 214-264 31-79 (88)
21 2b6g_A VTS1P; alpha-helix, pen 84.0 2.2 7.5E-05 34.9 6.1 55 206-263 55-109 (119)
22 2es6_A VTS1P; SAM domain, prot 81.5 2.2 7.4E-05 34.2 5.1 47 214-262 44-90 (101)
23 1v38_A SAM-domain protein sams 80.8 2 6.8E-05 31.7 4.4 43 214-258 25-70 (78)
24 1ucv_A Ephrin type-A receptor 80.4 2.7 9.1E-05 31.0 4.9 48 214-263 20-70 (81)
25 2kso_A Ephrin type-A receptor 77.3 4.5 0.00016 30.1 5.4 46 214-261 29-77 (82)
26 3k1r_B Usher syndrome type-1G 76.4 5.9 0.0002 29.0 5.7 46 214-264 19-64 (74)
27 1b0x_A Protein (EPHA4 receptor 75.2 4.3 0.00015 30.7 4.9 47 214-262 39-88 (94)
28 2xhi_A N-glycosylase/DNA lyase 74.7 17 0.00056 33.8 9.6 87 170-264 132-232 (360)
29 1b4f_A EPHB2; SAM domain, EPH 74.3 5.7 0.00019 29.1 5.2 47 215-263 25-74 (82)
30 2dl0_A SAM and SH3 domain-cont 74.1 2.2 7.4E-05 33.0 3.0 43 214-258 36-81 (97)
31 2eao_A Ephrin type-B receptor 73.4 4.5 0.00015 30.9 4.6 47 214-262 35-84 (99)
32 1x40_A ARAP2; ASAP-related pro 72.2 4 0.00014 30.9 4.0 46 214-261 28-76 (91)
33 3h8m_A Ephrin type-A receptor 70.3 6.7 0.00023 29.9 4.9 45 214-260 38-85 (90)
34 2k4p_A Phosphatidylinositol-3, 70.0 5.6 0.00019 30.2 4.4 42 214-257 39-83 (86)
35 3fhf_A Mjogg, N-glycosylase/DN 69.3 8.7 0.0003 33.4 6.0 66 187-260 40-105 (214)
36 3hil_A Ephrin type-A receptor 66.4 5.4 0.00019 29.9 3.6 42 214-257 36-80 (82)
37 3kka_C Ephrin type-A receptor 65.9 7.7 0.00026 29.3 4.4 43 214-258 34-79 (86)
38 2e8n_A Ephrin type-A receptor 64.4 4.8 0.00016 30.1 3.0 47 214-262 25-74 (88)
39 2kg5_A ARF-GAP, RHO-GAP domain 61.9 8.4 0.00029 29.8 4.1 43 214-258 39-84 (100)
40 1oxj_A RNA-binding protein sma 61.3 7.1 0.00024 33.9 3.9 44 214-260 20-63 (173)
41 2ean_A Connector enhancer of k 54.1 21 0.00072 25.9 4.9 45 214-262 32-76 (83)
42 3sei_A Caskin-1; SAM domain, p 51.3 15 0.00052 29.9 4.1 43 214-258 23-67 (149)
43 3sei_A Caskin-1; SAM domain, p 50.9 25 0.00087 28.6 5.4 47 215-263 93-142 (149)
44 2lmr_A ODIN, ankyrin repeat an 48.2 12 0.0004 29.2 2.8 43 214-258 42-89 (101)
45 2lv7_A Calcium-binding protein 48.0 7.7 0.00026 28.9 1.7 45 214-258 36-80 (100)
46 3bs5_B Connector enhancer of k 47.9 33 0.0011 24.5 5.0 39 221-261 33-71 (80)
47 2b1u_A Calmodulin-like protein 44.1 15 0.00051 23.8 2.5 44 213-256 5-48 (71)
48 2qkq_A Ephrin type-B receptor 42.9 19 0.00067 26.3 3.2 45 214-260 28-75 (83)
49 1k94_A Grancalcin; penta-EF-ha 41.9 19 0.00066 27.1 3.2 50 209-258 65-114 (165)
50 1eh2_A EPS15; calcium binding, 39.2 13 0.00045 28.2 1.8 38 203-241 4-41 (106)
51 2ktg_A Calmodulin, putative; e 38.8 15 0.00052 24.8 1.9 45 213-257 13-57 (85)
52 2gle_A Neurabin-1; SAM domain, 38.3 61 0.0021 22.7 5.1 45 214-260 22-68 (74)
53 2kz2_A Calmodulin, CAM; TR2C, 38.1 13 0.00045 26.5 1.6 44 214-257 29-72 (94)
54 1juo_A Sorcin; calcium-binding 37.5 28 0.00096 27.3 3.6 49 209-257 98-146 (198)
55 2f3n_A SH3 and multiple ankyri 37.3 35 0.0012 24.4 3.8 43 215-259 21-65 (76)
56 2jjz_A Ionized calcium-binding 35.4 31 0.0011 26.5 3.5 50 210-259 46-95 (150)
57 2kiv_A Ankyrin repeat and ster 34.9 31 0.0011 27.8 3.5 42 215-258 28-74 (148)
58 1j7q_A CAVP, calcium vector pr 34.6 17 0.00058 24.8 1.6 38 214-251 14-51 (86)
59 1wlz_A DJBP, CAP-binding prote 34.1 20 0.00069 25.3 2.0 45 211-255 21-65 (105)
60 2k9i_A Plasmid PRN1, complete 33.8 89 0.003 20.2 5.1 31 188-220 17-47 (55)
61 2d58_A Allograft inflammatory 33.0 28 0.00097 24.9 2.7 48 211-258 29-76 (107)
62 2aao_A CDPK, calcium-dependent 32.6 50 0.0017 24.5 4.1 61 192-256 9-69 (166)
63 1fi6_A EH domain protein REPS1 31.5 12 0.00039 26.9 0.3 30 212-241 7-36 (92)
64 1tiz_A Calmodulin-related prot 31.3 14 0.00046 23.6 0.6 42 216-257 3-44 (67)
65 2joj_A Centrin protein; N-term 30.7 14 0.00048 24.4 0.6 45 213-257 6-50 (77)
66 2jq6_A EH domain-containing pr 30.6 12 0.00041 30.4 0.4 35 204-240 42-76 (139)
67 2pvb_A Protein (parvalbumin); 30.3 36 0.0012 24.0 2.8 46 213-258 40-88 (108)
68 1kdx_B CREB; complex (transcri 30.2 7.3 0.00025 24.8 -0.8 17 207-223 7-23 (28)
69 2kn2_A Calmodulin; S MAPK phos 28.5 23 0.00077 24.4 1.4 43 214-256 9-51 (92)
70 2i7a_A Calpain 13; calcium-dep 28.3 20 0.0007 28.7 1.3 48 209-257 71-122 (174)
71 2znd_A Programmed cell death p 28.1 35 0.0012 25.9 2.6 48 209-256 69-116 (172)
72 1gjy_A Sorcin, CP-22, V19; cal 27.8 32 0.0011 26.0 2.3 54 204-257 59-115 (167)
73 2mys_C Myosin; muscle protein, 27.8 46 0.0016 23.9 3.1 44 213-256 84-127 (149)
74 1k2h_A S100A1, S-100 protein, 27.2 26 0.0009 24.0 1.6 32 211-242 6-39 (93)
75 1avs_A Troponin C; muscle cont 27.2 28 0.00094 24.0 1.7 44 213-256 19-62 (90)
76 2qac_A Myosin A tail domain in 27.0 54 0.0019 23.9 3.4 46 213-258 83-128 (146)
77 1wdc_C Scallop myosin; calcium 26.3 44 0.0015 24.6 2.8 45 213-257 83-127 (156)
78 1y1x_A Leishmania major homolo 25.9 47 0.0016 26.0 3.1 48 209-256 88-135 (191)
79 2kgr_A Intersectin-1; structur 25.6 17 0.00058 27.3 0.3 31 211-241 11-41 (111)
80 4h62_V Mediator of RNA polymer 25.3 22 0.00076 22.7 0.8 15 228-242 6-20 (31)
81 3bq7_A Diacylglycerol kinase d 24.5 84 0.0029 22.6 4.0 44 216-261 27-72 (81)
82 3bs7_A Protein aveugle; sterIl 24.1 1.7E+02 0.0057 20.6 5.5 47 216-264 25-73 (78)
83 1wy9_A Allograft inflammatory 23.9 48 0.0017 25.4 2.7 47 211-257 45-91 (147)
84 1c07_A Protein (epidermal grow 23.8 12 0.00041 27.0 -0.7 31 212-242 8-38 (95)
85 1c7v_A CAVP, calcium vector pr 23.7 46 0.0016 22.1 2.3 44 213-257 8-52 (81)
86 3h4s_E KCBP interacting Ca2+-b 23.4 53 0.0018 24.7 2.8 45 213-257 39-84 (135)
87 2ovk_B RLC, myosin regulatory 23.4 54 0.0019 24.1 2.8 45 214-258 16-60 (153)
88 1qjt_A EH1, epidermal growth f 22.6 21 0.00072 26.3 0.4 31 212-242 9-39 (99)
89 1pva_A Parvalbumin; calcium bi 22.6 45 0.0016 23.4 2.2 46 212-257 40-88 (110)
90 3i5g_B Myosin regulatory light 22.5 53 0.0018 25.4 2.7 44 213-256 84-127 (153)
91 2eam_A Putative 47 kDa protein 22.1 22 0.00075 25.8 0.4 43 214-258 25-72 (80)
92 3iuo_A ATP-dependent DNA helic 22.0 1.4E+02 0.0048 23.2 5.1 47 194-240 23-82 (122)
93 1ggw_A Protein (CDC4P); light 22.0 58 0.002 23.4 2.7 44 214-257 76-119 (140)
94 1wdc_B Scallop myosin; calcium 21.6 69 0.0024 23.6 3.1 45 213-257 86-130 (156)
95 1k9u_A Polcalcin PHL P 7; poll 21.4 24 0.00083 23.4 0.5 27 215-241 4-30 (78)
96 3rm1_A Protein S100-B; alpha-h 21.2 46 0.0016 23.7 1.9 31 211-242 6-39 (92)
97 2opo_A Polcalcin CHE A 3; calc 20.9 35 0.0012 23.0 1.2 43 213-256 10-52 (86)
98 1iq3_A Ralbp1-interacting prot 20.7 24 0.00081 26.7 0.3 8 232-239 54-61 (110)
99 3i5g_C Myosin catalytic light 20.2 31 0.0011 27.0 0.9 44 214-257 85-128 (159)
100 2obh_A Centrin-2; DNA repair c 20.1 72 0.0025 23.5 2.9 46 213-258 78-123 (143)
No 1
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A
Probab=100.00 E-value=4.3e-54 Score=375.57 Aligned_cols=108 Identities=31% Similarity=0.594 Sum_probs=105.3
Q ss_pred CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 024277 159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238 (270)
Q Consensus 159 ~~RC~Wat~~sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~ 238 (270)
++||.|++ ++|+|++|||+|||+|+|||++|||+||||||||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus 1 m~RC~W~~--~~ply~~YHD~EWG~Pv~Dd~~LFE~L~LEgfQAGLSW~tIL~KRe~fR~AF~~FD~~~VA~~~e~dve~ 78 (186)
T 2jg6_A 1 MNECAFGT--KDPVYLNYHDHVWGQPLYDSKALFKLLALESQHAGLSWLTILKKKEAYEEAFYDFEPEKVAQMTAQDIDR 78 (186)
T ss_dssp CTTTTTTC--CCHHHHHHHHHTTTSCCCCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTGGGCHHHHTTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHhCCCHHHHHH
Confidence 47999996 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhcchhHHHHHHHHHHHHHHhccc
Q 024277 239 AGSAASSLLSELKLRAIIENARQISKVGYP 268 (270)
Q Consensus 239 Ll~d~~IIRNr~KI~AVI~NArailkI~~~ 268 (270)
||+|++|||||+||+|||+||+++++|+++
T Consensus 79 Ll~d~gIIRnr~KI~A~i~NA~~~l~i~~e 108 (186)
T 2jg6_A 79 LMTFPNIVHHRKKLEAIVNQAQGYLKIEQA 108 (186)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCccchhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999864
No 2
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A*
Probab=100.00 E-value=5.3e-54 Score=374.03 Aligned_cols=108 Identities=38% Similarity=0.729 Sum_probs=105.0
Q ss_pred CCCCCCCCCCCChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHH
Q 024277 159 KKRCAWVTPNTDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLA 238 (270)
Q Consensus 159 ~~RC~Wat~~sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~ 238 (270)
++||.|++ ++|+|++|||+|||+|+|||++|||+||||+|||||||.|||+||++||+||+||||++||.|+|++|++
T Consensus 1 ~~RC~W~~--~~ply~~YHD~EWG~P~~Dd~~LFE~L~Le~fQAGLSW~tIL~KRe~fr~AF~~Fd~~~VA~~~e~~ve~ 78 (183)
T 2ofk_A 1 MQRCDWVS--QDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGLSWITVLKKRENYRACFHQFDPIRIAAMQEEDVER 78 (183)
T ss_dssp -CCCTTCC--SCHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTTSCHHHHHHTHHHHHHHTGGGCHHHHHTCCHHHHHH
T ss_pred CCCCCCCC--CChHHHHHHHhccCCcccCcHHHHHHHHHHHHhccCCHHHHHHhHHHHHHHHcCCCHHHHcCCCHHHHHH
Confidence 46999996 7999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccchhhcchhHHHHHHHHHHHHHHhccc
Q 024277 239 AGSAASSLLSELKLRAIIENARQISKVGYP 268 (270)
Q Consensus 239 Ll~d~~IIRNr~KI~AVI~NArailkI~~~ 268 (270)
||+|++|||||+||+|||+||+++++|+++
T Consensus 79 Ll~d~~IIRnr~KI~A~i~NA~~~l~i~~e 108 (183)
T 2ofk_A 79 LLQNTGIIRHRGKIQAIISNARAWLAMEQN 108 (183)
T ss_dssp HTTCTTSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred HhcCCcchhhHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999875
No 3
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans}
Probab=95.70 E-value=0.032 Score=48.80 Aligned_cols=90 Identities=17% Similarity=0.141 Sum_probs=70.1
Q ss_pred CChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCC--CHHHHhcCCHHHHHHhcccchhh
Q 024277 169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGF--DPIAVSKLNEKKLLAAGSAASSL 246 (270)
Q Consensus 169 sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gF--Dp~kVA~~~E~~Ie~Ll~d~~II 246 (270)
.|+.+....+..-|.+....+-.||.|+-.+...-.+|..+.+-...|.+.|..+ +|+.|+..++++|.. +-
T Consensus 29 ~d~~l~~l~~~~~~~~~~~~~dpfe~Lv~~IlsQqts~~~a~~~~~rL~~~~G~~fPtp~~la~~~~e~Lr~------~G 102 (233)
T 2h56_A 29 QDSRLFQFIEIAGEVQLPTKPNPFQSLVSSIVEQQLSIKAASAIYGRVEQLVGGALEKPEQLYRVSDEALRQ------AG 102 (233)
T ss_dssp TCHHHHHHHHHHCCEEEECCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTSCCCCTHHHHTSCHHHHHH------TT
T ss_pred cCHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCCCCCHHHHHcCCHHHHHH------cC
Confidence 4666655544444443333344899999999999999999999999999999777 999999999999833 23
Q ss_pred cchhHHHHHHHHHHHHHH
Q 024277 247 LSELKLRAIIENARQISK 264 (270)
Q Consensus 247 RNr~KI~AVI~NArailk 264 (270)
-.++|.+.|++=|+.+.+
T Consensus 103 ~~~~KA~~I~~~A~~i~~ 120 (233)
T 2h56_A 103 VSKRKIEYIRHVCEHVES 120 (233)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 567889999999988754
No 4
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A*
Probab=95.54 E-value=0.1 Score=45.44 Aligned_cols=70 Identities=16% Similarity=0.035 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
.||.|+-+++..-.+|..+..-...|.+.| .+++.|+..++++|++++..-+. .+.|.+.|++=|+.+.+
T Consensus 33 pfe~Lv~~IlsQqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~i~~ 102 (226)
T 1orn_A 33 PFELLIAVVLSAQCTDALVNKVTKRLFEKY--RTPHDYIAVPLEELEQDIRSIGL--YRNKARNIQKLCAMLID 102 (226)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--CSHHHHHSSCHHHHHHHTGGGSS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHC--CCHHHHHcCCHHHHHHHHHHcCC--hHHHHHHHHHHHHHHHH
Confidence 699999999999999999998888887777 48999999999999998876664 44677788888887764
No 5
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A
Probab=95.39 E-value=0.046 Score=47.68 Aligned_cols=90 Identities=22% Similarity=0.115 Sum_probs=71.6
Q ss_pred CChhhhhhhhcCCCc-cccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhc
Q 024277 169 TDPCYAAFHDEEWGV-PVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL 247 (270)
Q Consensus 169 sdply~~YHD~EWG~-PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIR 247 (270)
.||.+....+..-|. +.....-.||.|+-.+.-.-.+|..+.+-...|.+.|...+++.|+..++++|..+ --
T Consensus 38 ~D~~l~~l~~~~~~~~~~~~~~dpfe~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~ptp~~la~~~~e~Lr~~------G~ 111 (225)
T 2yg9_A 38 RDPVLAQVTSLCGELPVLAPTPDPFGRLVRSVAGQQLSVKAAQAIYGRLEGLPGGVVPAALLKVSGDDLRGV------GL 111 (225)
T ss_dssp TSHHHHHHHHHHCCCCCCCCCSCHHHHHHHHHHHTTSCHHHHHHHHHHHHTSTTCSCHHHHTTSCHHHHHHT------TC
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHhCcChHHHHHHHHHHHHHHhCcCCHHHHHcCCHHHHHHC------CC
Confidence 688776666655454 33344458999999999999999999998888888887789999999999988432 24
Q ss_pred chhHHHHHHHHHHHHHH
Q 024277 248 SELKLRAIIENARQISK 264 (270)
Q Consensus 248 Nr~KI~AVI~NArailk 264 (270)
.+.|.+.|++=|+.+.+
T Consensus 112 ~~~KA~~i~~lA~~~~~ 128 (225)
T 2yg9_A 112 SWAKVRTVQAAAAAAVS 128 (225)
T ss_dssp CHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHh
Confidence 57899999999988864
No 6
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima}
Probab=95.27 E-value=0.023 Score=49.87 Aligned_cols=67 Identities=12% Similarity=0.087 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhc-chhHHHHHHHHHHHH
Q 024277 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLL-SELKLRAIIENARQI 262 (270)
Q Consensus 187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIR-Nr~KI~AVI~NArai 262 (270)
.+.-.||.|+..++.+..+|..+.+-.+.| |+.++.+++++|++++...+ +| ++.|.+.|+++|+.+
T Consensus 46 ~~~~~fe~Lv~~ILsqqts~~~~~~a~~~L--------p~~l~~~~~eeL~~~Ir~~G-~Rf~~~KA~~I~~~a~~i 113 (219)
T 3n0u_A 46 TEEDLFCELSFCVLTANWSAEGGIRAQKEI--------GKGFVHLPLEELAEKLREVG-HRYPQKRAEFIVENRKLL 113 (219)
T ss_dssp CHHHHHHHHHHHHHTTTSCHHHHHHHHHHH--------TTHHHHCCHHHHHHHHHHTT-CSSHHHHHHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhc-chHHHHHHHHHHHHHHHH
Confidence 567799999999999999999887644444 78899999999999888777 45 789999999999875
No 7
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1
Probab=94.65 E-value=0.08 Score=45.29 Aligned_cols=71 Identities=18% Similarity=0.098 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 190 KLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 190 ~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
-.||.|+-+++..-.+|..+..-.+.|.+.| .+++.|+..++++|+.++..-+. .+.|.+.|++=|+.+.+
T Consensus 28 ~pfe~lv~~Il~qqts~~~v~~~~~~l~~~f--pt~~~la~a~~~~l~~~i~~~G~--~~~KA~~l~~~a~~~~~ 98 (211)
T 2abk_A 28 SPFELLIAVLLSAQATDVSVNKATAKLYPVA--NTPAAMLELGVEGVKTYIKTIGL--YNSKAENIIKTCRILLE 98 (211)
T ss_dssp SHHHHHHHHHHTTTSCHHHHHHHHHHHTTTC--CSHHHHHHHHHHHHHHHHTTSTT--HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH
Confidence 3799999999999999999877666554443 46999999999999988766554 56788888888888765
No 8
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2
Probab=94.55 E-value=0.16 Score=43.83 Aligned_cols=70 Identities=13% Similarity=0.010 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
.||.|+-+++..-.+|..+..-...|.+.| .+|+.|+..++++|++++..-+. .+.|.+.+++=|+.+.+
T Consensus 35 pfe~lv~~IlsQqts~~~~~~~~~~l~~~f--ptp~~la~a~~e~l~~~i~~~G~--~~~KA~~l~~~a~~i~~ 104 (221)
T 1kea_A 35 PYVILITEILLRRTTAGHVKKIYDKFFVKY--KCFEDILKTPKSEIAKDIKEIGL--SNQRAEQLKELARVVIN 104 (221)
T ss_dssp HHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHHSCHHHHHHHTGGGSC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHH
Confidence 799999999999999999999888888876 68999999999999988776554 46788888888888765
No 9
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A
Probab=94.01 E-value=0.13 Score=44.39 Aligned_cols=69 Identities=10% Similarity=0.115 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 191 LFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
.||.|+-+++..-.+|..+..-.+.|.+.| .+++.|+..++++|+++...-+.- .|.+.|++=|+.+.+
T Consensus 30 pfe~lv~~IlsQqt~~~~v~~~~~~l~~~~--pt~~~la~~~~~~l~~~i~~~G~~---~kA~~l~~~a~~i~~ 98 (225)
T 1kg2_A 30 PYKVWLSEVMLQQTQVATVIPYFERFMARF--PTVTDLANAPLDEVLHLWTGLGYY---ARARNLHKAAQQVAT 98 (225)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHC--SSHHHHHHSCHHHHHHHHTTSCCT---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhCChH---HHHHHHHHHHHHHHH
Confidence 699999999999999999987666666555 479999999999999887766654 288888888888764
No 10
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A*
Probab=93.50 E-value=0.34 Score=42.51 Aligned_cols=90 Identities=17% Similarity=0.113 Sum_probs=68.7
Q ss_pred CChhhhhhhhcCCCc--cccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC---C-CHHHHhcCCHHHHHHhccc
Q 024277 169 TDPCYAAFHDEEWGV--PVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG---F-DPIAVSKLNEKKLLAAGSA 242 (270)
Q Consensus 169 sdply~~YHD~EWG~--PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g---F-Dp~kVA~~~E~~Ie~Ll~d 242 (270)
.||.+..-.+..-|. |....+-.||.|+-.+.-.-.+|..+.+-...|.+.|.. | +|+.|+..++++|..
T Consensus 36 ~Dp~l~~li~~~~g~rl~~~~~~dpfe~Lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~fPtpe~la~~~~e~Lr~---- 111 (232)
T 4b21_A 36 IDNKWSSLVKKVGPCTLTPHPEHAPYEGIIRAITSQKLSDAATNSIINKFCTQCSDNDEFPTPKQIMETDVETLHE---- 111 (232)
T ss_dssp TCHHHHHHHHHHCSCCCCCCTTSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCSSSSCCCHHHHHTSCHHHHHT----
T ss_pred hCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCCCCCCHHHHHcCCHHHHHH----
Confidence 477665555544442 222223379999999999999999999999999999975 5 999999999998743
Q ss_pred chhhcchhHHHHHHHHHHHHHH
Q 024277 243 ASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 243 ~~IIRNr~KI~AVI~NArailk 264 (270)
+-..++|.+.|++=|+++.+
T Consensus 112 --~Gl~~~Ka~~l~~~A~~~~~ 131 (232)
T 4b21_A 112 --CGFSKLKSQEIHIVAEAALN 131 (232)
T ss_dssp --TTCCHHHHHHHHHHHHHHHT
T ss_pred --cCCcHHHHHHHHHHHHHHHh
Confidence 23467899999888888764
No 11
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe}
Probab=93.31 E-value=0.33 Score=42.37 Aligned_cols=89 Identities=16% Similarity=0.095 Sum_probs=68.9
Q ss_pred CChhhhhhhhcCCCcccc--ChH-HHHHHHHHHHHhcCCCHHHHHHhHHHHHHHh---cCC-CHHHHhcCCHHHHHHhcc
Q 024277 169 TDPCYAAFHDEEWGVPVH--DDK-KLFELLVLSGALSELTWPAILSKRHIFREVF---VGF-DPIAVSKLNEKKLLAAGS 241 (270)
Q Consensus 169 sdply~~YHD~EWG~Pvh--DDr-~LFE~L~LEgfQAGLSW~tILkKRe~FReAF---~gF-Dp~kVA~~~E~~Ie~Ll~ 241 (270)
.||.+..-.+..-|..+. ..+ -.||.|+-.+...-.||..+.+-...| +.| ..| +++.|+..++++|..
T Consensus 25 ~Dp~l~~li~~~g~~r~~~~~~~~d~fe~Lv~~Il~Qq~s~~~a~~~~~rL-~~~Gg~~~fPtp~~la~~~~e~Lr~--- 100 (228)
T 3s6i_A 25 LDENWKRLVKLVGNYRPNRSMEKKEPYEELIRAVASQQLHSKAANAIFNRF-KSISNNGQFPTPEEIRDMDFEIMRA--- 100 (228)
T ss_dssp SCHHHHHHHHHHCSCCCCCTTTTSCHHHHHHHHHHHSSSCHHHHHHHHHHH-HTSSGGGSCCCHHHHHHSCHHHHHH---
T ss_pred hChHHHHHHHHcCCCCCCCCCCcCCHHHHHHHHHHhCcCCHHHHHHHHHHH-HHhcCCCCCCCHHHHHcCCHHHHHH---
Confidence 588777666655454432 122 479999999999999999999999999 888 345 999999999998843
Q ss_pred cchhhcchhHHHHHHHHHHHHHH
Q 024277 242 AASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 242 d~~IIRNr~KI~AVI~NArailk 264 (270)
+--.++|.+.|++=|+.+.+
T Consensus 101 ---~G~~~rKa~~i~~~A~~~~~ 120 (228)
T 3s6i_A 101 ---CGFSARKIDSLKSIAEATIS 120 (228)
T ss_dssp ---HTCCHHHHHHHHHHHHHHHH
T ss_pred ---cCCCHHHHHHHHHHHHHHHc
Confidence 33567899999988888763
No 12
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=92.41 E-value=0.55 Score=42.89 Aligned_cols=72 Identities=10% Similarity=0.126 Sum_probs=61.7
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 188 DKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 188 Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
.+-.||.|+-+++-.-.+|..+..-...|.+.|- +++.|+..++++|+++...-|.- + |.+.|++=|+.+++
T Consensus 46 ~~dpfe~LVs~ILsQQts~~~v~~~~~rL~~~fp--tpe~La~a~~eel~~~ir~lG~~--~-KA~~L~~~A~~i~~ 117 (287)
T 3n5n_X 46 DRRAYAVWVSEVMLQQTQVATVINYYTGWMQKWP--TLQDLASASLEEVNQLWAGLGYY--S-RGRRLQEGARKVVE 117 (287)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC--SHHHHHTSCHHHHHHHHTTSSCH--H-HHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCC--CHHHHHcCCHHHHHHHHHHcCCH--H-HHHHHHHHHHHHHH
Confidence 4678999999999999999999988888888774 89999999999999988766654 3 78888888888765
No 13
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A*
Probab=92.08 E-value=0.66 Score=40.06 Aligned_cols=72 Identities=17% Similarity=0.184 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHhHHHHHHH-hcCCC----HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 191 LFELLVLSGALSELTWPAILSKRHIFREV-FVGFD----PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 191 LFE~L~LEgfQAGLSW~tILkKRe~FReA-F~gFD----p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
-||.|+-.++..-.+|..+.+-...|.+. |-..+ ++.|+..++++|++++..-+ -.+.|.+.|++=|+.+.+
T Consensus 30 pfe~Lv~~ILsQqts~~~v~~~~~~L~~~~~pt~~~~~t~~~la~~~~e~L~~~ir~~G--~~~~KA~~L~~~a~~i~~ 106 (218)
T 1pu6_A 30 KFEALLGAVLTQNTKFEAVLKSLENLKNAFILENDDEINLKKIAYIEFSKLAECVRPSG--FYNQKAKRLIDLSGNILK 106 (218)
T ss_dssp SHHHHHHHHHTTTSCHHHHHHHHHHHHHTTSSCSCHHHHHHHHHHSCHHHHHHHTGGGS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHccCCCccccccHHHHHhCCHHHHHHHHHHCC--CcHHHHHHHHHHHHHHHH
Confidence 59999999999999999998877777766 54322 99999999999998876655 346677888888877754
No 14
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A
Probab=91.82 E-value=1.1 Score=40.43 Aligned_cols=88 Identities=16% Similarity=0.127 Sum_probs=69.1
Q ss_pred CChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHHHH
Q 024277 169 TDPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAVSKLNEKKL 236 (270)
Q Consensus 169 sdply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g-----------F-Dp~kVA~~~E~~I 236 (270)
.||.+..-.+.-.|..+.. +-.||.|+-.+.-.-.+|..+.+-...|.+.|.. | +|+.|+..+++++
T Consensus 94 ~Dp~l~~~~~~~~glR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtpe~la~~~~e~L 172 (290)
T 3i0w_A 94 RDPLLKKSVDFGEGIRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGKKLEYKGKIYYAFPTVDKLHEFTEKDF 172 (290)
T ss_dssp TSHHHHHHHHHTTTCCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHTTCCHHHH
T ss_pred hCHHHHHHHHHCCCCCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCcccCCcccccCCcHHHHHCCCHHHH
Confidence 3666665555566766654 5689999999999999999999999999998753 5 9999999999999
Q ss_pred HHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 237 LAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 237 e~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
..+. +- .|.+.|+.=|+++.+
T Consensus 173 ~~~g----~g---~Ra~~I~~~A~~i~~ 193 (290)
T 3i0w_A 173 EECT----AG---FRAKYLKDTVDRIYN 193 (290)
T ss_dssp HHTT----CG---GGHHHHHHHHHHHHT
T ss_pred HHcC----Cc---hHHHHHHHHHHHHHh
Confidence 8742 21 178888888887753
No 15
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A
Probab=91.42 E-value=0.78 Score=38.44 Aligned_cols=68 Identities=9% Similarity=0.044 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277 192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (270)
Q Consensus 192 FE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail 263 (270)
|+.|+-+++.+--+|.+|..--+.|.+.|- +++.+|..++++|+.+...-|.-++ |-+.|++-|+.++
T Consensus 32 ~~vLVs~ILsqQT~~~~v~~~~~~l~~~~p--t~~~la~a~~~el~~~i~~lG~y~~--KAk~i~~~a~~~v 99 (161)
T 4e9f_A 32 WKLLIATIFLNRTSGKMAIPVLWKFLEKYP--SAEVARTADWRDVSELLKPLGLYDL--RAKTIVKFSDEYL 99 (161)
T ss_dssp HHHHHHHHHTTTSCHHHHHHHHHHHHHHSC--SHHHHTTSCHHHHHHHHGGGSCHHH--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcHHHHHHHHHHHHHHCC--CHHHHhccChHhHHhHhhhcCCHHH--HHHHHHHHhCCcC
Confidence 899999999999999999876666655553 8999999999999999887766544 5556777777654
No 16
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=90.94 E-value=1 Score=41.30 Aligned_cols=72 Identities=14% Similarity=0.217 Sum_probs=60.2
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 188 DKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 188 Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
.+--||.|+-+++..-.+|.++..-...|.+.| .+++.++..++++|+.+...-+.- + |.+.+++=|+.+.+
T Consensus 36 ~~~p~~~lv~~il~qqt~~~~~~~~~~~l~~~~--pt~~~la~a~~~~l~~~i~~~G~~--~-ra~~l~~~a~~~~~ 107 (369)
T 3fsp_A 36 DRDPYKVWVSEVMLQQTRVETVIPYFEQFIDRF--PTLEALADADEDEVLKAWEGLGYY--S-RVRNLHAAVKEVKT 107 (369)
T ss_dssp CCCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHC--CSHHHHHTSCHHHHHHTTTTSSCT--H-HHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHhccCcHHHHHHHHHHHHHHC--CCHHHHHCCCHHHHHHHHHhcChH--H-HHHHHHHHHHHHHH
Confidence 344799999999999999999998888887776 589999999999999887766653 4 78888888888865
No 17
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus}
Probab=90.53 E-value=0.78 Score=39.21 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=57.1
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (270)
Q Consensus 187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail 263 (270)
..+-.||.|+-+++-.-.+|..+.+-.+.| ++.++..++++|++++...++--.+.|.+.+.+-|+.+.
T Consensus 29 ~~~~~fe~Lv~~ILsqqts~~~~~~~~~~L--------~~~l~~~~~e~l~~~ir~~G~g~~~~KA~~l~~~a~~~~ 97 (207)
T 3fhg_A 29 NEEVWFRELTLCLLTANSSFISAYQALNCL--------GQKIYYANEEEIRNILKSCKYRFYNLKAKYIIMAREKVY 97 (207)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH--------GGGGGTCCHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHcCCCCHHHHHHHHHHH--------HHHHHcCCHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH
Confidence 567799999999999999999998877776 588999999999987765554356789999998888553
No 18
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A
Probab=87.89 E-value=1.2 Score=40.00 Aligned_cols=87 Identities=17% Similarity=0.133 Sum_probs=66.2
Q ss_pred CChhhhhhhhcCCCccccC--hHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC-----------C-CHHHHhcCCHH
Q 024277 169 TDPCYAAFHDEEWGVPVHD--DKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-----------F-DPIAVSKLNEK 234 (270)
Q Consensus 169 sdply~~YHD~EWG~PvhD--Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g-----------F-Dp~kVA~~~E~ 234 (270)
.||.+..-.+..-|..+.- ..-.||.|+-.+...-.+|..+.+-...|.+.|.. | +++.|+..+++
T Consensus 94 ~D~~l~~l~~~~~glr~~~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~g~~~~~fPtp~~la~~~~~ 173 (295)
T 2jhn_A 94 GDEKLRMLKNRFYGFGRAGLMSMSVFEGIAKAIIQQQISFVVAEKLAAKIVGRFGDEVEWNGLKFYGFPTQEAILKAGVE 173 (295)
T ss_dssp TSHHHHHHHHHTTTCCSCCCSCSSHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCEEEETTEEEECCCCHHHHHHHHHH
T ss_pred cCHHHHHHHHHcCCCCCCCCCCCCHHHHHHHHHHcCcccHHHHHHHHHHHHHHhCCCCCCCCCccccCCCHHHHHcCCHH
Confidence 4666665555555655543 45589999999999999999999999999999864 4 79999999988
Q ss_pred HHHHhcccchhhcchhHHHHHHHHHHH
Q 024277 235 KLLAAGSAASSLLSELKLRAIIENARQ 261 (270)
Q Consensus 235 ~Ie~Ll~d~~IIRNr~KI~AVI~NAra 261 (270)
+|..+ --.++|.+.|+.=|++
T Consensus 174 ~Lr~~------G~~~rKa~~i~~~A~~ 194 (295)
T 2jhn_A 174 GLREC------GLSRRKAELIVEIAKE 194 (295)
T ss_dssp HHHHT------TCCHHHHHHHHHHHTC
T ss_pred HHHHc------CCCHHHHHHHHHHHHC
Confidence 87433 2467788888777654
No 19
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A*
Probab=86.64 E-value=3.4 Score=36.63 Aligned_cols=78 Identities=14% Similarity=0.051 Sum_probs=62.3
Q ss_pred CCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC----------C-CHHHHhcCCHHHHHHhcccchhhcch
Q 024277 181 WGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG----------F-DPIAVSKLNEKKLLAAGSAASSLLSE 249 (270)
Q Consensus 181 WG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g----------F-Dp~kVA~~~E~~Ie~Ll~d~~IIRNr 249 (270)
.|..+....-.||.|+-.+...-.+|..+.+-...|.+.|.. | +++.|+..++++|..+ --.+
T Consensus 103 ~glR~~~~~d~fe~lv~~Il~Qq~s~~~a~~~~~rL~~~~G~~~~~~~~~~~fPtp~~la~~~~~~Lr~~------G~~~ 176 (282)
T 1mpg_A 103 PGLRLPGCVDAFEQGVRAILGQLVSVAMAAKLTARVAQLYGERLDDFPEYICFPTPQRLAAADPQALKAL------GMPL 176 (282)
T ss_dssp TTCCCCCCSCHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHCCBCSSCTTCBCCCCHHHHHTCCHHHHHHT------TSCH
T ss_pred CCCcCCCCCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCCCCCCCCCcccCCCHHHHHcCCHHHHHHc------CCCH
Confidence 454444445589999999999999999999999999988743 4 7999999999998432 3457
Q ss_pred hHHHHHHHHHHHHHH
Q 024277 250 LKLRAIIENARQISK 264 (270)
Q Consensus 250 ~KI~AVI~NArailk 264 (270)
.|.+.|+.=|+++.+
T Consensus 177 ~ra~~i~~~A~~~~~ 191 (282)
T 1mpg_A 177 KRAEALIHLANAALE 191 (282)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc
Confidence 888899988888864
No 20
>2d3d_A VTS1 protein; RNA binding, SAM domain, SRE hairpin binding, RNA binding protein; 1.60A {Saccharomyces cerevisiae} PDB: 2f8k_A 2fe9_A
Probab=86.30 E-value=1.2 Score=34.69 Aligned_cols=49 Identities=18% Similarity=0.196 Sum_probs=40.9
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
+-|.+.|.+.+.+.+..++|++++.+... ..-+|+||...|+.-|....
T Consensus 31 hKY~~~F~~~~~~~l~~LtdedL~~~GVt--a~GaRrKil~aI~~lr~~~~ 79 (88)
T 2d3d_A 31 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDYKE 79 (88)
T ss_dssp GGGHHHHTTSCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhcCCHHHHHHcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHHHh
Confidence 56889999999999999999999998765 24689999999987776543
No 21
>2b6g_A VTS1P; alpha-helix, pentaloop, hairpin, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=84.03 E-value=2.2 Score=34.87 Aligned_cols=55 Identities=20% Similarity=0.236 Sum_probs=43.4
Q ss_pred HHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277 206 WPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (270)
Q Consensus 206 W~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail 263 (270)
|..-|+ -.-|.+.|.+.|.+.+..++|++++.+... .+-+|+||...|.--+...
T Consensus 55 WL~sLr-L~KY~~~F~~~~~d~l~~LTeeDL~~lGVt--a~GaRrKlL~AI~~Lr~~k 109 (119)
T 2b6g_A 55 WLKSLR-LHKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDYK 109 (119)
T ss_dssp HHHHHT-CHHHHHHHTTSCHHHHTTCCHHHHHHHSCC--CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCC-ChhHHHHHccCCHHHHHhcCHHHHHHCCCC--ccccHHHHHHHHHHHHhhh
Confidence 544332 377899999999999999999999998754 3579999998887666554
No 22
>2es6_A VTS1P; SAM domain, protein structure, gene regulation; NMR {Saccharomyces cerevisiae} PDB: 2ese_A
Probab=81.54 E-value=2.2 Score=34.16 Aligned_cols=47 Identities=19% Similarity=0.195 Sum_probs=38.8
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArai 262 (270)
.-|.+.|.+.+.+.+..++|++++.+... .+-+|+||...|+.-+..
T Consensus 44 hKY~~~F~~~~~~~l~~LTdedL~~~GVt--a~GARrKiL~aI~~Lr~~ 90 (101)
T 2es6_A 44 HKYSDALSGTPWIELIYLDDETLEKKGVL--ALGARRKLLKAFGIVIDY 90 (101)
T ss_dssp CCTHHHHTTSCHHHHTTCCHHHHHHHTCC--SHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHccCCHHHHHhcCHHHHHHcCCc--cHhHHHHHHHHHHHHHHH
Confidence 45778889999999999999999998765 246899999998876654
No 23
>1v38_A SAM-domain protein samsn-1; structural genomics, hypothetical protein, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.60.1.2
Probab=80.83 E-value=2 Score=31.68 Aligned_cols=43 Identities=14% Similarity=0.243 Sum_probs=33.6
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
+.|...| .+|| .+.|+.++++++.+|.... .-||.||...|..
T Consensus 25 ~~Y~~~F~~~gy~~~~~~~~lt~~DL~~lGI~~--~ghrkkil~ai~~ 70 (78)
T 1v38_A 25 QEYTSTLLLNGYETLDDLKDIKESHLIELNIAD--PEDRARLLSAAES 70 (78)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHTTTCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhcCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 5577777 7995 9999999999999986642 3589998876654
No 24
>1ucv_A Ephrin type-A receptor 8; receptor oligomerization, developmental regulation, tyrosine kinase, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=80.35 E-value=2.7 Score=31.01 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=36.8
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail 263 (270)
+.|.+.| .+|| .+.|..++++|+.+|.... +-||.||...|..-+.-.
T Consensus 20 ~~Y~~~F~~~~~d~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~l~~~~ 70 (81)
T 1ucv_A 20 GRYRDHFAAGGYSSLGMVLRMNAQDVRALGITL--MGHQKKILGSIQTMRAQL 70 (81)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHHcCHHHHHhCCCCC--hhHHHHHHHHHHHHHHHH
Confidence 4567777 5688 8999999999999876542 459999988887766543
No 25
>2kso_A Ephrin type-A receptor 2; SAM domain, heterodimer, cell signaling, angiogenesis, apopt ATP-binding, cataract; NMR {Homo sapiens}
Probab=77.34 E-value=4.5 Score=30.06 Aligned_cols=46 Identities=11% Similarity=0.201 Sum_probs=35.1
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAra 261 (270)
+-|.+.| .+|| .+.+..++++|+..|.... +-+|.||...|..-+.
T Consensus 29 ~qY~~~F~~~gid~~~~L~~lt~~DL~~lGI~~--~GhRkkIl~ai~~Lr~ 77 (82)
T 2kso_A 29 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRL--PGHQKRIAYSLLGLKD 77 (82)
T ss_dssp TTHHHHHHHTTCCSHHHHTTCCHHHHHHHHCCC--TTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHH
Confidence 4566666 4688 8999999999999886642 4589999887776553
No 26
>3k1r_B Usher syndrome type-1G protein; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens}
Probab=76.38 E-value=5.9 Score=29.02 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=36.7
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
+.|.+ .++|.+.+..++++|+.++... +=+|.||...|..=+..++
T Consensus 19 ~~F~~--~~id~e~l~~lt~~DL~~lGI~---~G~RkkIl~ai~~~~~~~~ 64 (74)
T 3k1r_B 19 ALLRQ--EKIDLEALMLCSDLDLRSISVP---LGPREKILGAVRRRRQAME 64 (74)
T ss_dssp HHHHH--TTCCHHHHTTCCHHHHHHTTCC---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--cCcCHHHHhHCCHHHHHHcCCC---cchHHHHHHHHHHHHHHhc
Confidence 55655 5689999999999999998776 4599999988877666554
No 27
>1b0x_A Protein (EPHA4 receptor tyrosine kinase); protein interaction module, dimerization domain, transferase; 2.00A {Mus musculus} SCOP: a.60.1.2
Probab=75.22 E-value=4.3 Score=30.75 Aligned_cols=47 Identities=19% Similarity=0.361 Sum_probs=35.5
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHH
Q 024277 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (270)
Q Consensus 214 e~FReAF~--gF-Dp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArai 262 (270)
+.|.+.|. +| |.+.+..++++|+.++.... +-||.||...|..-+.-
T Consensus 39 ~~Y~~~F~~~g~~~~~~l~~lt~~DL~~lGI~~--~GhrkkIl~ai~~L~~~ 88 (94)
T 1b0x_A 39 DRYKDNFTAAGYTTLEAVVHMSQDDLARIGITA--ITHQNKILSSVQAMRTQ 88 (94)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHhhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHHH
Confidence 45666664 56 78999999999999886542 45999998887776543
No 28
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Probab=74.66 E-value=17 Score=33.85 Aligned_cols=87 Identities=16% Similarity=0.054 Sum_probs=61.5
Q ss_pred ChhhhhhhhcCCCccccChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcC-------------CCHHHHhcCCHH-H
Q 024277 170 DPCYAAFHDEEWGVPVHDDKKLFELLVLSGALSELTWPAILSKRHIFREVFVG-------------FDPIAVSKLNEK-K 235 (270)
Q Consensus 170 dply~~YHD~EWG~PvhDDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~g-------------FDp~kVA~~~E~-~ 235 (270)
||.+....+..-|..+.. +-.||.|+-.+...-.+|..|.+-...|.+.|.. -+|+.|+..+.+ .
T Consensus 132 Dp~l~~l~~~~~glR~~~-~dpfE~LV~~ILsQq~s~~~a~~~~~rL~~~~G~~~~~~~g~~~~~fPtpe~La~~~~ee~ 210 (360)
T 2xhi_A 132 DSHFQEVAQKFQGVRLLR-QDPIECLFSFICSSNNNIARITGMVERLCQAFGPRLIQLDDVTYHGFPSLQALAGPEVEAH 210 (360)
T ss_dssp CHHHHHHHHHSTTCCCCC-CCHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSCEEEEETTEEEECCCCHHHHTSTTHHHH
T ss_pred CHHHHHHHHHcCCCCCCC-CCHHHHHHHHHHhCcCcHHHHHHHHHHHHHHhCCCcccCCCcccccCCCHHHHHcCCHHHH
Confidence 333333344445655544 4689999999999999999999999999988743 379999999754 3
Q ss_pred HHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 236 LLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 236 Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
|.. -++ . .|.+.|+.=|+++.+
T Consensus 211 Lr~----~Gl-~--~RA~~I~~~A~~i~~ 232 (360)
T 2xhi_A 211 LRK----LGL-G--YRARYVSASARAILE 232 (360)
T ss_dssp HHH----TTC-T--THHHHHHHHHHHHHH
T ss_pred HHH----cCC-c--HHHHHHHHHHHHHHh
Confidence 433 233 2 478888888888754
No 29
>1b4f_A EPHB2; SAM domain, EPH receptor, signal transduction, oligomer; 1.95A {Homo sapiens} SCOP: a.60.1.2 PDB: 1f0m_A 1sgg_A
Probab=74.29 E-value=5.7 Score=29.06 Aligned_cols=47 Identities=23% Similarity=0.288 Sum_probs=34.9
Q ss_pred HHHHHh--cCC-CHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277 215 IFREVF--VGF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (270)
Q Consensus 215 ~FReAF--~gF-Dp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail 263 (270)
.|.+.| .+| |.+.+..++++|+..+.... +-||.||...|..-+.-.
T Consensus 25 ~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhrkkIl~ai~~l~~~~ 74 (82)
T 1b4f_A 25 QYKESFANAGFTSFDVVSQMMMEDILRVGVTL--AGHQKKILNSIQVMRAQM 74 (82)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHhCCHHHHHHcCCCC--HHHHHHHHHHHHHHHHHH
Confidence 455666 367 78999999999999876542 358999988887766443
No 30
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.13 E-value=2.2 Score=33.03 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=33.1
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
+.|.+.| .+|| .+.|..++++|+.+|.... .-||.||..-|..
T Consensus 36 ~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~--~gHrkkIl~ai~~ 81 (97)
T 2dl0_A 36 PMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITE--ERHIRKLLSAARL 81 (97)
T ss_dssp GGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCC--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 4567777 4688 7899999999999987642 4699999866643
No 31
>2eao_A Ephrin type-B receptor 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.37 E-value=4.5 Score=30.92 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=34.9
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArai 262 (270)
+.|.+.| .+|| .+.+..|+++|+.+|.... +-||.||...|..-+.-
T Consensus 35 ~~Y~~~F~~~~~~~~~~L~~lt~~DL~~lGI~~--~GhRkkIl~ai~~l~~~ 84 (99)
T 2eao_A 35 VQYRDSFLTAGFTSLQLVTQMTSEDLLRIGITL--AGHQKKILNSIHSMRVQ 84 (99)
T ss_dssp GGGHHHHHHHTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHHH
Confidence 3455555 4688 8999999999999976542 45999998887765543
No 32
>1x40_A ARAP2; ASAP-related protein2, GTPase activity, signal transduction, SAM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=72.18 E-value=4 Score=30.86 Aligned_cols=46 Identities=13% Similarity=0.138 Sum_probs=33.8
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024277 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (270)
Q Consensus 214 e~FReAF~--gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAra 261 (270)
+-|.+.|. +|| .+.|..++++|+.+|... .+-||.||...|..-+.
T Consensus 28 ~qY~~~F~~~g~~~~~~l~~lt~~DL~~lGI~--~~GHrkkIl~ai~~L~~ 76 (91)
T 1x40_A 28 EQYLLHFHESGFTTVKDCAAINDSLLQKIGIS--PTGHRRRILKQLQIILS 76 (91)
T ss_dssp GGGHHHHHHHTCCBSGGGGGCCHHHHHHHTCC--CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHhhcCHHHHHHCCCC--CHhHHHHHHHHHHHHHh
Confidence 34556663 574 789999999999987654 24699999887776553
No 33
>3h8m_A Ephrin type-A receptor 7; SAM domain, kinase,structural genomics, structural genomics consortium, SGC, alternative splicing, ATP-binding; 2.10A {Homo sapiens}
Probab=70.34 E-value=6.7 Score=29.86 Aligned_cols=45 Identities=16% Similarity=0.388 Sum_probs=33.3
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAr 260 (270)
+.|.+.| .+|| .+.|..++++|+.+|.... +-+|.||-..|..-|
T Consensus 38 ~qY~~~F~~~g~d~~e~l~~lt~~DL~~lGIt~--~GHRkkIL~ai~~Lr 85 (90)
T 3h8m_A 38 ERYKDNFTAAGYNSLESVARMTIEDVMSLGITL--VGHQKKIMSSIQTMR 85 (90)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHH
Confidence 3455555 5788 9999999999999885542 358999887776543
No 34
>2k4p_A Phosphatidylinositol-3,4,5-trisphosphate 5- phosphatase 2; helix bundle, signaling protein, actin-binding, alternative splicing, cell adhesion; NMR {Homo sapiens} PDB: 2kso_B
Probab=69.99 E-value=5.6 Score=30.16 Aligned_cols=42 Identities=24% Similarity=0.303 Sum_probs=32.2
Q ss_pred HHHHHHhc--CCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 214 HIFREVFV--GFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 214 e~FReAF~--gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
+.|.+.|. +|| .+.|..++++|+.++... .+-+|.||...|.
T Consensus 39 ~qY~~~F~~~g~~~le~l~~lt~~DL~~lGIt--~~GHRkkIL~aI~ 83 (86)
T 2k4p_A 39 ERYEEGLVHNGWDDLEFLSDITEEDLEEAGVQ--DPAHKRLLLDTLQ 83 (86)
T ss_dssp GGGHHHHHTTTCCCHHHHTTCCHHHHHHTTCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCC--CHHHHHHHHHHHH
Confidence 56777774 574 799999999999988664 2468999876664
No 35
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A*
Probab=69.29 E-value=8.7 Score=33.44 Aligned_cols=66 Identities=11% Similarity=0.017 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024277 187 DDKKLFELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (270)
Q Consensus 187 DDr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAr 260 (270)
+.+-.||.|+..+.-+--+|..+.+--+.+ | +.++..++++|++++..-+.=-.+.|-+-|++-|+
T Consensus 40 ~~~~~fe~Lv~~ILsqqt~~~~v~~a~~~L---~-----~~l~~~~~eeL~~~Ir~~G~rf~~~KA~~I~~~a~ 105 (214)
T 3fhf_A 40 SNEEWFKELCFCILTANFTAEGGIRIQKEI---G-----DGFLTLPREELEEKLKNLGHRFYRKRAEYIVLARR 105 (214)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHHH---T-----THHHHSCHHHHHHHHHHTTCTTHHHHHHHHHHHGG
T ss_pred CCCChHHHHHHHHHcCCCCHHHHHHHHHHH---H-----HHHHCCCHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 567899999999999999999998766655 3 56899999999998776552134456666666665
No 36
>3hil_A Ephrin type-A receptor 1; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.00A {Homo sapiens} PDB: 3kka_A
Probab=66.43 E-value=5.4 Score=29.86 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=30.7
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
+.|.+.| .+|| .+.|..++++|+.+|.... +-+|.||-..|.
T Consensus 36 ~qY~~~F~~~g~~s~e~l~~lt~~DL~~lGIt~--~GHRkkIL~aiq 80 (82)
T 3hil_A 36 KRYILHFHSAGLDTMECVLELTAEDLTQMGITL--PGHQKRILCSIQ 80 (82)
T ss_dssp GGGHHHHHHTTCCSGGGGTTCCHHHHHHTTCCC--HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhcCCHHHHHHCCCCC--HHHHHHHHHHHH
Confidence 3455555 4788 8899999999999885542 358888876654
No 37
>3kka_C Ephrin type-A receptor 2; ATP-binding, kinase, nucleotide-binding, transferase, tyrosine-protein kinase, signal, sterIle alpha motif; 2.40A {Homo sapiens} SCOP: a.60.1.0
Probab=65.86 E-value=7.7 Score=29.28 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=31.9
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
+.|.+.| .+|| .+.|..++++|+.+|.... +-+|.||-..|..
T Consensus 34 ~qY~~~F~~~g~d~le~l~~lt~~DL~~LGIt~--~GHRkkIL~ai~~ 79 (86)
T 3kka_C 34 QQYTEHFMAAGYTAIEKVVQMTNDDIKRIGVRL--PGHQKRIAYSLLG 79 (86)
T ss_dssp GGGHHHHHHTTCCSHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 4455566 4688 8999999999999886542 3588898776643
No 38
>2e8n_A Ephrin type-A receptor 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.44 E-value=4.8 Score=30.06 Aligned_cols=47 Identities=11% Similarity=0.176 Sum_probs=35.7
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArai 262 (270)
+.|.+.| .+|| .+.+..|+++++.+|.... +-||.||...|..-+.-
T Consensus 25 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~~--~GhRkkIl~ai~~l~~~ 74 (88)
T 2e8n_A 25 QQYTEHFMAAGYTAIEKVVQMTNDDVKRIGVRL--PGHQKRIAYSLLGLKDQ 74 (88)
T ss_dssp GGGHHHHHHHTCSSHHHHTTSCTTHHHHTTCCS--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHhCCHHHHHHCCCCC--hhHHHHHHHHHHHHHHh
Confidence 4455666 3688 8999999999999886542 45999998888776644
No 39
>2kg5_A ARF-GAP, RHO-GAP domain, ANK repeat and PH domain-containing protein 3; SAM domain, helix bundle, cell membrane, cell projection, cytoplasm; NMR {Homo sapiens}
Probab=61.94 E-value=8.4 Score=29.84 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=32.1
Q ss_pred HHHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 214 HIFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 214 e~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
+.|.+.| .+|| .+.+..++++|+.+|.... +-+|.||...|..
T Consensus 39 ~qY~~~F~~~gid~~~~L~~Lt~eDLkeLGIt~--~GhRkkIL~aI~~ 84 (100)
T 2kg5_A 39 EQYADTFRRHGLATAGAARGLGHEELKQLGISA--TGHRKRILRLLQT 84 (100)
T ss_dssp GGGHHHHHHTTCCBHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCChHHHHHhcCHHHHHHCCCCC--hhHHHHHHHHHHH
Confidence 3455556 4788 8999999999999986642 4689998766644
No 40
>1oxj_A RNA-binding protein smaug; SAM domain, PHAT domain; 1.80A {Drosophila melanogaster} SCOP: a.60.1.2 a.118.1.13
Probab=61.29 E-value=7.1 Score=33.85 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAr 260 (270)
+-|.+.|.+.+.+.+..++|++++.+.... -+|.||...|+.-|
T Consensus 20 hKY~~~F~~~~~e~~~~LTdedL~~~GVT~---GARrKIL~aIq~Lr 63 (173)
T 1oxj_A 20 HKYIELFKNMTYEEMLLITEDFLQSVGVTK---GASHKLALCIDKLK 63 (173)
T ss_dssp GGGGGGGTTCCHHHHTTCCHHHHHHTTCCH---HHHHHHHHHHHHHH
T ss_pred chhHHHHccCCHHHHHhcCHHHHHHCCCch---HHHHHHHHHHHHHH
Confidence 457889999999999999999999987773 68999888876644
No 41
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.09 E-value=21 Score=25.87 Aligned_cols=45 Identities=7% Similarity=0.079 Sum_probs=33.5
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQI 262 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArai 262 (270)
+.|++ +++|-+.+..++++++.+|... -+-+|.||..-|..-+..
T Consensus 32 ~~F~~--~~I~G~~Ll~Lt~~dL~~LGI~--~~ghr~~il~~I~~L~~~ 76 (83)
T 2ean_A 32 KNFER--EKISGDQLLRITHQELEDLGVS--RIGHQELILEAVDLLCAL 76 (83)
T ss_dssp HHHHH--HTCCHHHHTTCCHHHHHHHTCC--CSHHHHHHHHHHHHHHHH
T ss_pred HHHHH--CCCCHHHHhhCCHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Confidence 34443 5678899999999999987654 246899998888776544
No 42
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=51.29 E-value=15 Score=29.92 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=32.2
Q ss_pred HHHHHHhc--CCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 214 HIFREVFV--GFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 214 e~FReAF~--gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
+-|.+.|. +||.+.+..++++|+.+|.... .-+|.||...|..
T Consensus 23 ~~Y~~~F~~~g~d~~~l~~lt~~DL~~lGIt~--~gHrkkil~ai~~ 67 (149)
T 3sei_A 23 QLYAPNFISAGYDLPTISRMTPEDLTAIGVTK--PGHRKKIAAEISG 67 (149)
T ss_dssp GGGHHHHHHTTCCHHHHTTCCHHHHHHTTCCS--HHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--HHHHHHHHHHHHH
Confidence 34556664 8999999999999999886542 3589998766643
No 43
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=50.87 E-value=25 Score=28.60 Aligned_cols=47 Identities=15% Similarity=0.237 Sum_probs=35.3
Q ss_pred HHHHHh--cCCC-HHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHH
Q 024277 215 IFREVF--VGFD-PIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQIS 263 (270)
Q Consensus 215 ~FReAF--~gFD-p~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArail 263 (270)
-|.+.| .+|| .+.|..++++++..+.... +-+|.||...|..-+.+.
T Consensus 93 qY~~~F~~~g~d~~~~l~~lt~~dL~~lGI~~--~gHr~kIl~ai~~l~~~~ 142 (149)
T 3sei_A 93 QYYKVLVDNGYENIDFITDITWEDLQEIGITK--LGHQKKLMLAVRKLAELR 142 (149)
T ss_dssp GGHHHHHHTTCCSHHHHTTCCHHHHHHHTCCC--HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHCCCchHHHHhhCCHHHHHHCCCCC--HHHHHHHHHHHHHHHHHH
Confidence 455555 4798 8999999999998876542 358899888887666554
No 44
>2lmr_A ODIN, ankyrin repeat and SAM domain-containing protein; signaling protein; NMR {Homo sapiens}
Probab=48.22 E-value=12 Score=29.24 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=31.7
Q ss_pred HHHHHHhc--CCC-HHHHh--cCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 214 HIFREVFV--GFD-PIAVS--KLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 214 e~FReAF~--gFD-p~kVA--~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
+.|.+.|. +|| .+.|+ .++++|+.+|... .+-+|.||...|..
T Consensus 42 ~qY~~~F~~~g~d~~e~l~~~~Lt~eDL~eLGIt--~~GHRkkIL~aI~~ 89 (101)
T 2lmr_A 42 QQYESKLLLNGFDDVHFLGSNVMEEQDLRDIGIS--DPQHRRKLLQAARS 89 (101)
T ss_dssp GGGHHHHHHTTCCCTTSTTTSCCCHHHHHHHTCC--CHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCC--CHHHHHHHHHHHHH
Confidence 56777774 566 67888 8999999988765 24589998766654
No 45
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=48.04 E-value=7.7 Score=28.87 Aligned_cols=45 Identities=24% Similarity=0.290 Sum_probs=35.5
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
+.++++|.-||.+.=-.++-+++..++..-++-.+...|+.++.-
T Consensus 36 ~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 36 EEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp HHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 447889999999988889999998888776666677777777653
No 46
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=47.87 E-value=33 Score=24.53 Aligned_cols=39 Identities=5% Similarity=0.015 Sum_probs=30.5
Q ss_pred cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024277 221 VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (270)
Q Consensus 221 ~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAra 261 (270)
+++|-..+..++++++.+|.... +-+|.||...|..-+.
T Consensus 33 ~~i~G~~Ll~L~~~dL~~lGI~~--~ghr~~il~~I~~L~~ 71 (80)
T 3bs5_B 33 EKISGDQLLRITHQELEDLGVSR--IGHQELILEAVDLLCA 71 (80)
T ss_dssp HTCCHHHHHTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHCCHHHHHHcCCCC--HHHHHHHHHHHHHHHH
Confidence 57888999999999998876532 4588998877776554
No 47
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=44.09 E-value=15 Score=23.75 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI 256 (270)
.+.++++|..||...=-.++.+++..++..-++-.+...|..++
T Consensus 5 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 48 (71)
T 2b1u_A 5 LEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMI 48 (71)
T ss_dssp HHHHHHHHTTSCCSSSSEEEHHHHHHHGGGTTCSSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 46789999999988777788888888776655444444454444
No 48
>2qkq_A Ephrin type-B receptor 4; ATP-binding, glycoprotein, kinase, membrane, nucleotide- binding, phosphorylation, repeat, signal, transferase; 2.10A {Homo sapiens}
Probab=42.89 E-value=19 Score=26.25 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=33.0
Q ss_pred HHHHHHhc--CC-CHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024277 214 HIFREVFV--GF-DPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (270)
Q Consensus 214 e~FReAF~--gF-Dp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAr 260 (270)
+.|.+.|. +| |.+.+..++++|+.++... .+-||.||...|..-+
T Consensus 28 ~~Y~~~F~~~~~~~~~~l~~lt~~dL~~lGI~--~~GhrkkIl~ai~~l~ 75 (83)
T 2qkq_A 28 GRYEESFAAAGFGSFELVSQISAEDLLRIGVT--LAGHQKKILASVQHMK 75 (83)
T ss_dssp GGGHHHHHHTTCCSHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHcCCCcHHHHhhCCHHHHHHCCCC--CHHHHHHHHHHHHHHH
Confidence 45777775 44 7899999999999997554 2458999987665543
No 49
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=41.90 E-value=19 Score=27.14 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=34.9
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 209 ILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
++.+.+.++++|..||.+.=-.++-+++..++..-+.-.+...+..++..
T Consensus 65 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 114 (165)
T 1k94_A 65 LWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKR 114 (165)
T ss_dssp HHHHHHHHHHHHHHHCTTCCSBCCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCceECHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 44456788999999998887778888887776654444455556555543
No 50
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=39.16 E-value=13 Score=28.20 Aligned_cols=38 Identities=13% Similarity=0.237 Sum_probs=23.3
Q ss_pred CCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcc
Q 024277 203 ELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (270)
Q Consensus 203 GLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~ 241 (270)
|..|..=-..++.|+++|.-||. .=-.++-+++..++.
T Consensus 4 ~~~w~ls~~e~~~~~~~F~~~D~-~dG~Is~~el~~~l~ 41 (106)
T 1eh2_A 4 GSPWAVKPEDKAKYDAIFDSLSP-VNGFLSGDKVKPVLL 41 (106)
T ss_dssp --CCSSCHHHHHHHHHHHTTSCC-SSSCCBHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCeEcHHHHHHHHH
Confidence 45565444567889999999997 433455555555444
No 51
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=38.79 E-value=15 Score=24.77 Aligned_cols=45 Identities=22% Similarity=0.275 Sum_probs=31.2
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
.+.++++|..||.+.=-.++-+++..++..-++-.+...|..++.
T Consensus 13 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 13 QQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp HHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 467889999999877666777778777665554445555655554
No 52
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=38.32 E-value=61 Score=22.72 Aligned_cols=45 Identities=13% Similarity=0.196 Sum_probs=32.3
Q ss_pred HHHHHHh--cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHH
Q 024277 214 HIFREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENAR 260 (270)
Q Consensus 214 e~FReAF--~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAr 260 (270)
+.|.+.| +++|-..+..++++++..|.... +-+|.||..-|..-+
T Consensus 22 ~~y~~~F~~~~i~g~~Ll~l~~~dL~~lGI~~--~g~r~kil~~i~~L~ 68 (74)
T 2gle_A 22 DQYVSEFSAQNISGEQLLQLDGNKLKALGMTS--SQDRALVKKKLKEMK 68 (74)
T ss_dssp HHHHHHHTTTTCCHHHHHTCCHHHHHTTTCCC--HHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHcCCCHHHHhhCCHHHHHHcCCCC--HHHHHHHHHHHHHHH
Confidence 4466666 45677899999999988765431 458888877766544
No 53
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=38.14 E-value=13 Score=26.53 Aligned_cols=44 Identities=16% Similarity=0.134 Sum_probs=27.1
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
+.++++|..||.+.=-.++.+++..++..-+.-.....|+.++.
T Consensus 29 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~ 72 (94)
T 2kz2_A 29 EEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIR 72 (94)
T ss_dssp HHHHHHHHHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45677777777766666677777766655444444555555544
No 54
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=37.51 E-value=28 Score=27.32 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=32.4
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 209 ILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
++...+.++++|..||.+.=-.++.+++..++..-+.-.....|..++.
T Consensus 98 ~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~ 146 (198)
T 1juo_A 98 LWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAK 146 (198)
T ss_dssp HHHHHHHHHHHHHTTCTTCCSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4445678999999999887667777777776654443334444554443
No 55
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=37.29 E-value=35 Score=24.41 Aligned_cols=43 Identities=9% Similarity=0.194 Sum_probs=30.8
Q ss_pred HHHHHh--cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHH
Q 024277 215 IFREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENA 259 (270)
Q Consensus 215 ~FReAF--~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NA 259 (270)
.|.+.| .++|-..+..++++++..|.... +-+|.||...|..-
T Consensus 21 ~Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~Ghr~kIl~aI~~l 65 (76)
T 2f3n_A 21 EHRDRFEDHEIEGAHLPALTKEDFVELGVTR--VGHRENIERALRQL 65 (76)
T ss_dssp GGHHHHHHTTCCGGGGGGCCHHHHHHTTCCC--HHHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCHHHHccCCHHHHHHcCCCC--hhHHHHHHHHHHHH
Confidence 355555 46788899999999998776541 34788887666543
No 56
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin crosslinking, ionized calciu binding adapter molecule 2, metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B 2vtg_A
Probab=35.35 E-value=31 Score=26.50 Aligned_cols=50 Identities=16% Similarity=0.220 Sum_probs=36.6
Q ss_pred HHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHH
Q 024277 210 LSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENA 259 (270)
Q Consensus 210 LkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NA 259 (270)
-...+.++++|..||.+.=-.++-+++..++..-+.-.+...|..++..+
T Consensus 46 ~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~e~~~l~~~~ 95 (150)
T 2jjz_A 46 PEKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEV 95 (150)
T ss_dssp HHHHHHHHHHHTTSCCCTTSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcCCHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 35567899999999998877888888887776555445566666666543
No 57
>2kiv_A Ankyrin repeat and sterIle alpha motif domain- containing protein 1B; SAM domain, tandem, signaling protein, alternative splicing, ANK repeat; NMR {Homo sapiens}
Probab=34.87 E-value=31 Score=27.83 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=30.9
Q ss_pred HHHHHh--cCCCH-HHHh--cCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 215 IFREVF--VGFDP-IAVS--KLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 215 ~FReAF--~gFDp-~kVA--~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
.|.+.| .+||- +.|+ .++++|+..+.... .-+|.||...|.+
T Consensus 28 ~Y~~~F~~~g~d~~~~l~~~~lt~~DL~~lGI~~--~ghRkkil~ai~~ 74 (148)
T 2kiv_A 28 QYENHLMANGFDNVQAMGSNVMEDQDLLEIGILN--SGHRQRILQAIQL 74 (148)
T ss_dssp TSHHHHHHTTTTBGGGGTSSCCCHHHHHHHCCSS--TTSHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHhhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 455666 57776 6676 99999999876652 3599999877765
No 58
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=34.64 E-value=17 Score=24.75 Aligned_cols=38 Identities=11% Similarity=0.003 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELK 251 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~K 251 (270)
+.++++|..||.+.=-.++-+++..++..-+.-.+...
T Consensus 14 ~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~ 51 (86)
T 1j7q_A 14 DECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRE 51 (86)
T ss_dssp HHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHH
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHH
Confidence 45778888888777666777777766654443333333
No 59
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=34.13 E-value=20 Score=25.34 Aligned_cols=45 Identities=16% Similarity=0.339 Sum_probs=27.2
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHH
Q 024277 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAI 255 (270)
Q Consensus 211 kKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AV 255 (270)
...+.++++|..||.+.=-.++-+++..++..-+.-.+...|..+
T Consensus 21 ~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~e~~~l 65 (105)
T 1wlz_A 21 SHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRL 65 (105)
T ss_dssp HTHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred chHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHH
Confidence 345678889999988766666666666655443333333334333
No 60
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=33.78 E-value=89 Score=20.17 Aligned_cols=31 Identities=13% Similarity=0.150 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHhcCCCHHHHHHhHHHHHHHh
Q 024277 188 DKKLFELLVLSGALSELTWPAILSKRHIFREVF 220 (270)
Q Consensus 188 Dr~LFE~L~LEgfQAGLSW~tILkKRe~FReAF 220 (270)
|..|++.|---+.+.|+|...+++ +++++.+
T Consensus 17 ~~el~~~l~~~a~~~g~s~s~~ir--~ai~~~l 47 (55)
T 2k9i_A 17 PQEWHDRLMEIAKEKNLTLSDVCR--LAIKEYL 47 (55)
T ss_dssp CHHHHHHHHHHHHHHTCCHHHHHH--HHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCHHHHHH--HHHHHHH
Confidence 567888888888899999998874 4555543
No 61
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein; 1.90A {Homo sapiens}
Probab=33.02 E-value=28 Score=24.94 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=33.6
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 211 kKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
...+.++++|..||.+.=-.++-+++..++..-+.-.+...|..++..
T Consensus 29 ~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~l~~~ 76 (107)
T 2d58_A 29 SKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGE 76 (107)
T ss_dssp HHHHHHHHHHTTSCCCTTSCEEHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 345678999999998877777888887776655544455566655543
No 62
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=32.64 E-value=50 Score=24.49 Aligned_cols=61 Identities=18% Similarity=0.187 Sum_probs=40.1
Q ss_pred HHHHHHHHHhcCCCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024277 192 FELLVLSGALSELTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (270)
Q Consensus 192 FE~L~LEgfQAGLSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI 256 (270)
|..+++..+...|+...+ ..++++|..||...=-.++-+++..++..-+.-.....|..++
T Consensus 9 ~~~~~~~~~~~~l~~~~~----~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~ 69 (166)
T 2aao_A 9 FKKMALRVIAESLSEEEI----AGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLM 69 (166)
T ss_dssp HHHHHHHHHHHHSCHHHH----HHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHH----HHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 455667777777887654 4577888888887767778888877666544333444454444
No 63
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=31.46 E-value=12 Score=26.92 Aligned_cols=30 Identities=10% Similarity=0.050 Sum_probs=21.1
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhcc
Q 024277 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (270)
Q Consensus 212 KRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~ 241 (270)
.++.|+++|.-||.+.=-.++-+++..++.
T Consensus 7 ~~~~~~~~F~~~D~d~dG~I~~~el~~~l~ 36 (92)
T 1fi6_A 7 QRQYYVNQFKTIQPDLNGFIPGSAAKEFFT 36 (92)
T ss_dssp HHHHHHHHHTTTCCSTTCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 456799999999987655556666665554
No 64
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=31.31 E-value=14 Score=23.57 Aligned_cols=42 Identities=21% Similarity=0.244 Sum_probs=25.9
Q ss_pred HHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 216 FREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 216 FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
++++|..||...=-.++-+++..++..-++-.+...|..++.
T Consensus 3 l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 44 (67)
T 1tiz_A 3 AKRVFEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFE 44 (67)
T ss_dssp HHHHHHHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 567777777776666777777766655444344445554443
No 65
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=30.70 E-value=14 Score=24.37 Aligned_cols=45 Identities=16% Similarity=0.193 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
.+.++++|..||...=-.++-+++..++..-++-.+...|..++.
T Consensus 6 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 6 KQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp HHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 456788888888877666777777776655444344444554443
No 66
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=30.59 E-value=12 Score=30.37 Aligned_cols=35 Identities=11% Similarity=0.238 Sum_probs=17.9
Q ss_pred CCHHHHHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhc
Q 024277 204 LTWPAILSKRHIFREVFVGFDPIAVSKLNEKKLLAAG 240 (270)
Q Consensus 204 LSW~tILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll 240 (270)
..|.+ -..++.|+++|.-|| +.=-.++-+++..+|
T Consensus 42 ~~W~~-~~e~~~l~~~F~~fD-d~dG~Is~~El~~~l 76 (139)
T 2jq6_A 42 VEWVV-GKDKPTYDEIFYTLS-PVNGKITGANAKKEM 76 (139)
T ss_dssp CCCGG-GGTHHHHHHHHHHSC-CSSSEEEHHHHHHHH
T ss_pred CCCCC-hHHHHHHHHHHHHhC-CCCCeECHHHHHHHH
Confidence 34543 344556677777777 433334444444443
No 67
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=30.29 E-value=36 Score=23.95 Aligned_cols=46 Identities=13% Similarity=0.124 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccc---hhhcchhHHHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAA---SSLLSELKLRAIIEN 258 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~---~IIRNr~KI~AVI~N 258 (270)
.+.++++|..||.+.=-.++-+++..++..- +.-.....|..++..
T Consensus 40 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~ 88 (108)
T 2pvb_A 40 LDDVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLAD 88 (108)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 5778999999999887888999998887754 333455556665543
No 68
>1kdx_B CREB; complex (transcription activator/CO-activator), protein- protein interaction, phosphoserine recognition; HET: SEP; NMR {Rattus norvegicus}
Probab=30.19 E-value=7.3 Score=24.79 Aligned_cols=17 Identities=29% Similarity=0.585 Sum_probs=14.7
Q ss_pred HHHHHhHHHHHHHhcCC
Q 024277 207 PAILSKRHIFREVFVGF 223 (270)
Q Consensus 207 ~tILkKRe~FReAF~gF 223 (270)
..||.+|+.||..|.+|
T Consensus 7 r~iL~rrpSYrkIlndl 23 (28)
T 1kdx_B 7 REILSRRPSYRKILNDL 23 (28)
T ss_dssp HHHHTTSTHHHHHHHHH
T ss_pred hhhhhcCchHHHHHHhh
Confidence 46899999999999876
No 69
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=28.49 E-value=23 Score=24.35 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=22.7
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI 256 (270)
+.++++|..||.+.=-.++-+++..++..-++-.+...|..++
T Consensus 9 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 51 (92)
T 2kn2_A 9 EELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMI 51 (92)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4566777777766555555566655554433333333344333
No 70
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=28.33 E-value=20 Score=28.69 Aligned_cols=48 Identities=15% Similarity=0.134 Sum_probs=29.0
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccc----hhhcchhHHHHHHH
Q 024277 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAA----SSLLSELKLRAIIE 257 (270)
Q Consensus 209 ILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~----~IIRNr~KI~AVI~ 257 (270)
++.+...++++|.-|| +.=-.++-+++..++..- +.-.+...++.++.
T Consensus 71 ~~~~~~~l~~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~~~~~~~~~l~~ 122 (174)
T 2i7a_A 71 LWKRLVHYQHVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIFISRELLHLVTL 122 (174)
T ss_dssp HHHHHHHHHHHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCCCCHHHHHHHHH
Confidence 3445567899999999 875556666666555443 33334445555543
No 71
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=28.09 E-value=35 Score=25.88 Aligned_cols=48 Identities=19% Similarity=0.158 Sum_probs=30.5
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024277 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (270)
Q Consensus 209 ILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI 256 (270)
++...+.++++|..||.+.=-.++.+++..++..-+.-.....+..++
T Consensus 69 ~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 116 (172)
T 2znd_A 69 VWKYITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILI 116 (172)
T ss_dssp HHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 344557789999999988766777777776665443333344444443
No 72
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=27.83 E-value=32 Score=26.04 Aligned_cols=54 Identities=15% Similarity=0.246 Sum_probs=34.9
Q ss_pred CCHHH---HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 204 LTWPA---ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 204 LSW~t---ILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
++|.. ++...+.++++|..||.+.=-.++.+++..++..-+.-.....+..++.
T Consensus 59 i~~~eF~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 115 (167)
T 1gjy_A 59 MGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAK 115 (167)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 55544 4445578899999999887667777777776655443344445555443
No 73
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=27.76 E-value=46 Score=23.92 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=29.9
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI 256 (270)
.+.++++|..||...=-.++-+++..++..-+.-.....+..++
T Consensus 84 ~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 127 (149)
T 2mys_C 84 FEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMTEEEVEELM 127 (149)
T ss_pred HHHHHHHHHHhCCCCCceEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 36788999999988777778888877766544433444444443
No 74
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=27.25 E-value=26 Score=24.04 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=18.7
Q ss_pred HhHHHHHHHhcCCC-HHHHh-cCCHHHHHHhccc
Q 024277 211 SKRHIFREVFVGFD-PIAVS-KLNEKKLLAAGSA 242 (270)
Q Consensus 211 kKRe~FReAF~gFD-p~kVA-~~~E~~Ie~Ll~d 242 (270)
...+.++++|.-|| .+.=- .++-+++..++..
T Consensus 6 ~~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~ 39 (93)
T 1k2h_A 6 TAMETLINVFHAHSGKEGDKYKLSKKELKDLLQT 39 (93)
T ss_dssp HHHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCCCcCccCHHHHHHHHHH
Confidence 34456677777776 45444 5666666655543
No 75
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=27.23 E-value=28 Score=23.95 Aligned_cols=44 Identities=23% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI 256 (270)
.+.++++|..||.+.=-.++-+++..++..-++-.+...|..++
T Consensus 19 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 62 (90)
T 1avs_A 19 IAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAII 62 (90)
T ss_dssp HHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 45678888888877666677777776665544434444555444
No 76
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=26.97 E-value=54 Score=23.88 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
.+.++++|..||.+.=-.++-+++..++..-+.-.....+..++..
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 128 (146)
T 2qac_A 83 VEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNA 128 (146)
T ss_dssp HHHHHHHHHTTCTTCSSEEEHHHHHHHHHHSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 5678999999999887778888888877665555566666666653
No 77
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=26.32 E-value=44 Score=24.57 Aligned_cols=45 Identities=22% Similarity=0.198 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
.+.++++|..||...=-.++-+++..++..-+.-.....|..++.
T Consensus 83 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 127 (156)
T 1wdc_C 83 FADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIK 127 (156)
T ss_dssp HHHHHHHHHTTCSSSSSEEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 367889999999887777788888877765554445555665554
No 78
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=25.90 E-value=47 Score=26.00 Aligned_cols=48 Identities=21% Similarity=0.178 Sum_probs=30.4
Q ss_pred HHHhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024277 209 ILSKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (270)
Q Consensus 209 ILkKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI 256 (270)
++...+.++++|..||.+.=-.++.+++..++..-+.-.+...+..++
T Consensus 88 ~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~g~~~~~~~~~~~~ 135 (191)
T 1y1x_A 88 LHHFILSMREGFRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALM 135 (191)
T ss_dssp HHHHHHHHHHHHHHHCTTSSSCBCHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 334457788999999987766777777777665544333444444443
No 79
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=25.60 E-value=17 Score=27.32 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=19.0
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhcc
Q 024277 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGS 241 (270)
Q Consensus 211 kKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~ 241 (270)
..++.|+++|.-||.+.=-.++-+++..++.
T Consensus 11 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~ 41 (111)
T 2kgr_A 11 SSRLKYRQLFNSHDKTMSGHLTGPQARTILM 41 (111)
T ss_dssp HHHHHHHHHHHTTSCSSCCEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 3456778888888866544455555555444
No 80
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=25.30 E-value=22 Score=22.69 Aligned_cols=15 Identities=20% Similarity=0.328 Sum_probs=9.6
Q ss_pred HhcCCHHHHHHhccc
Q 024277 228 VSKLNEKKLLAAGSA 242 (270)
Q Consensus 228 VA~~~E~~Ie~Ll~d 242 (270)
|..|+|++|++|+.|
T Consensus 6 vtrfdekqieelldn 20 (31)
T 4h62_V 6 VTRFDEKQIEELLDN 20 (31)
T ss_dssp ----CHHHHHHHHHH
T ss_pred cccccHHHHHHHHHH
Confidence 667899999998865
No 81
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=24.47 E-value=84 Score=22.65 Aligned_cols=44 Identities=11% Similarity=0.230 Sum_probs=31.8
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHH
Q 024277 216 FREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQ 261 (270)
Q Consensus 216 FReAF--~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NAra 261 (270)
|.+.| .++|-..+..++++++..|.... +-+|.||...|..-+.
T Consensus 27 Y~~~F~~~~idg~~Ll~Lt~~dL~~lGI~~--~ghr~kIl~aI~~L~~ 72 (81)
T 3bq7_A 27 YKDIFTRHDIRGSGLLHLERRDLKDLGVTK--VGHMKRILCGIKELSR 72 (81)
T ss_dssp GHHHHHHTTCCHHHHTTCCHHHHHHTTCCC--HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHCcCCHHHHhHcCCCC--HHHHHHHHHHHHHHHH
Confidence 45555 45788889999999999875532 4588898877765443
No 82
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=24.08 E-value=1.7e+02 Score=20.57 Aligned_cols=47 Identities=13% Similarity=0.186 Sum_probs=33.9
Q ss_pred HHHHh--cCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHHHHHHHH
Q 024277 216 FREVF--VGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIENARQISK 264 (270)
Q Consensus 216 FReAF--~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~NArailk 264 (270)
|.+.| ++.|-..+..++++++..|... .+-+|.||..-|..-|.-.+
T Consensus 25 y~~~F~~~~I~G~~Ll~L~~~dL~~lGI~--~~g~r~~il~~I~~Lr~~~~ 73 (78)
T 3bs7_A 25 YEQLFAQHDITGRALLRITDSSLQRMGVT--DNRDREAIWREIVKQRLKTD 73 (78)
T ss_dssp GHHHHHHTTCCHHHHTTCCHHHHHHHTCC--CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHhhCCHHHHhHcCCC--CHHHHHHHHHHHHHHHhHHH
Confidence 55555 5678899999999999987554 24678888877776554433
No 83
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Probab=23.88 E-value=48 Score=25.39 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=32.8
Q ss_pred HhHHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 211 SKRHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 211 kKRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
...+.++++|.-||.+.=-.++-+++..++..-+.-.....|..++.
T Consensus 45 ~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~g~~~~~~~~~~l~~ 91 (147)
T 1wy9_A 45 SKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIR 91 (147)
T ss_dssp HHHHHHHHHHTTSCCCTTSSEEHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45577999999999887777777888776665444445555555554
No 84
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=23.84 E-value=12 Score=27.05 Aligned_cols=31 Identities=10% Similarity=0.044 Sum_probs=19.7
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhccc
Q 024277 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSA 242 (270)
Q Consensus 212 KRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d 242 (270)
.++.|+++|..||.+.=-.++-+++..++..
T Consensus 8 ~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~ 38 (95)
T 1c07_A 8 EKAKYDEIFLKTDKDMDGFVSGLEVREIFLK 38 (95)
T ss_dssp HHHHHHHHHHHHCTTCSSEECHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 3466777888887765555566666555543
No 85
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Probab=23.69 E-value=46 Score=22.11 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccch-hhcchhHHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAAS-SLLSELKLRAIIE 257 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~-IIRNr~KI~AVI~ 257 (270)
.+.++ +|..||.+.=-.++-+++..++..-+ .-.+...|..++.
T Consensus 8 ~~~l~-~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 52 (81)
T 1c7v_A 8 EEILR-AFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMK 52 (81)
T ss_dssp HHHHH-HHHHHSCSGGGEECHHHHHHHSSTTTTCCCCHHHHHHHHH
T ss_pred HHHHH-HHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 35677 88888887777778888877776544 3344445554443
No 86
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=23.40 E-value=53 Score=24.66 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=29.0
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchh-hcchhHHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASS-LLSELKLRAIIE 257 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~I-IRNr~KI~AVI~ 257 (270)
.+.++++|..||.+.=-.++-+++..++..-++ -.....|..++.
T Consensus 39 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~e~~~~~~ 84 (135)
T 3h4s_E 39 VSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVR 84 (135)
T ss_dssp HHHHHHHHHHHSBTTTTBBCHHHHHHHGGGGTCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 356788888888877667777777776665443 334444555443
No 87
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=23.38 E-value=54 Score=24.07 Aligned_cols=45 Identities=16% Similarity=0.154 Sum_probs=33.3
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
..++++|..||...=-.++-+++..++..-++-.+...|..++..
T Consensus 16 ~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 60 (153)
T 2ovk_B 16 QELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKE 60 (153)
T ss_dssp HHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 567888888888877788888888877766655566666666554
No 88
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=22.62 E-value=21 Score=26.29 Aligned_cols=31 Identities=3% Similarity=0.008 Sum_probs=20.4
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhccc
Q 024277 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSA 242 (270)
Q Consensus 212 KRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d 242 (270)
..+.|+++|.-||.+.=-.++-+++..++..
T Consensus 9 ~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~ 39 (99)
T 1qjt_A 9 GNPVYEKYYRQVEAGNTGRVLALDAAAFLKK 39 (99)
T ss_dssp TCTHHHHHHHHHCCTTSSCCCSHHHHHHHHT
T ss_pred hHHHHHHHHHHHCCCCCCcCCHHHHHHHHHH
Confidence 3456788888888776555666666655544
No 89
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=22.58 E-value=45 Score=23.38 Aligned_cols=46 Identities=17% Similarity=0.204 Sum_probs=33.3
Q ss_pred hHHHHHHHhcCCCHHHHhcCCHHHHHHhcccc---hhhcchhHHHHHHH
Q 024277 212 KRHIFREVFVGFDPIAVSKLNEKKLLAAGSAA---SSLLSELKLRAIIE 257 (270)
Q Consensus 212 KRe~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~---~IIRNr~KI~AVI~ 257 (270)
..+.++++|..||.+.=-.++-+++..++..- +.-.+...|..++.
T Consensus 40 ~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~ 88 (110)
T 1pva_A 40 SANDVKKVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLK 88 (110)
T ss_dssp CHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTCCCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 45778999999999887788889998877654 33344555555554
No 90
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=22.47 E-value=53 Score=25.40 Aligned_cols=44 Identities=16% Similarity=0.161 Sum_probs=29.4
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI 256 (270)
.+.+++||.-||.+.=-.++-+++..++..-+.-.+..-|..+|
T Consensus 84 ~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~ei~~~~ 127 (153)
T 3i5g_B 84 EDALRNAFSMFDEDGQGFIPEDYLKDLLENMGDNFSKEEIKNVW 127 (153)
T ss_dssp HHHHHHHHHTTCSSCSSCCCHHHHHHHHHSSSSCCCHHHHHHHH
T ss_pred HHHHHHHHhccccCCCCeEeHHHHHHHHHHcCCcCCHHHHHHHH
Confidence 46788999999998777777777777666544434444444444
No 91
>2eam_A Putative 47 kDa protein; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.12 E-value=22 Score=25.80 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=28.8
Q ss_pred HHHHHHhcC--CC-HHHH--hcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 214 HIFREVFVG--FD-PIAV--SKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 214 e~FReAF~g--FD-p~kV--A~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
+.|.+.|.. || .+.| ..++++++.++.... +-||.||...|..
T Consensus 25 ~~Y~~~F~~~~i~~~~~l~~~~lt~~dL~~lGI~~--~ghR~kIl~ai~~ 72 (80)
T 2eam_A 25 PQYENHLMANGFDNVQFMGSNVMEDQDLLEIGILN--SGHRQRILQAIQL 72 (80)
T ss_dssp GGGHHHHHHTTCCCTTTSSSSSSCTTHHHHSSCCC--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHhhccCCHHHHHHCCCCC--HHHHHHHHHHHHH
Confidence 445666644 54 2455 699999999876542 4589998766653
No 92
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=22.05 E-value=1.4e+02 Score=23.21 Aligned_cols=47 Identities=11% Similarity=0.090 Sum_probs=30.0
Q ss_pred HHHHHHHhcCCCHHHHHHhH---------HHHHHHhcC--CCHHHHhc--CCHHHHHHhc
Q 024277 194 LLVLSGALSELTWPAILSKR---------HIFREVFVG--FDPIAVSK--LNEKKLLAAG 240 (270)
Q Consensus 194 ~L~LEgfQAGLSW~tILkKR---------e~FReAF~g--FDp~kVA~--~~E~~Ie~Ll 240 (270)
+.+++.|+.|+++..|-..| +.-+-+..| +|+..+-. +++++++.+.
T Consensus 23 ~~t~~l~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i~~~i~~~l~~~~~~~I~ 82 (122)
T 3iuo_A 23 VSIVQQIDRKVALDDIAVSHGLDFPELLSEVETIVYSGTRINIDYFINEVMDEDHLEDIF 82 (122)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCCCHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccCHHHHcccccCHHHHHHHH
Confidence 36677777777776665555 222334555 68888877 8888776643
No 93
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=21.96 E-value=58 Score=23.45 Aligned_cols=44 Identities=18% Similarity=0.175 Sum_probs=32.0
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
+.++++|..||.+.=-.++.+++..++..-+.-....-+..++.
T Consensus 76 ~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 119 (140)
T 1ggw_A 76 EEFVKGFQVFDKDATGMIGVGELRYVLTSLGEKLSNEEMDELLK 119 (140)
T ss_dssp HHHHHHHHTTCSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 77899999999988778888888887765444344445555543
No 94
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=21.58 E-value=69 Score=23.59 Aligned_cols=45 Identities=18% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
.+.++++|.-||.+.=-.++-+++..++..-+.-.....|..++.
T Consensus 86 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~ 130 (156)
T 1wdc_B 86 EETIRNAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFK 130 (156)
T ss_dssp HHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 367899999999887777788888877765544445555555554
No 95
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=21.35 E-value=24 Score=23.38 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=13.8
Q ss_pred HHHHHhcCCCHHHHhcCCHHHHHHhcc
Q 024277 215 IFREVFVGFDPIAVSKLNEKKLLAAGS 241 (270)
Q Consensus 215 ~FReAF~gFDp~kVA~~~E~~Ie~Ll~ 241 (270)
.++++|..||...=-.++-+++..++.
T Consensus 4 ~l~~~F~~~D~~~~G~i~~~el~~~l~ 30 (78)
T 1k9u_A 4 DMERIFKRFDTNGDGKISLSELTDALR 30 (78)
T ss_dssp HHHHHHHHHCTTCSSEECHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 355566666655444445555544443
No 96
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=21.23 E-value=46 Score=23.66 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=19.3
Q ss_pred HhHHHHHHHhcCCCHHHHh---cCCHHHHHHhccc
Q 024277 211 SKRHIFREVFVGFDPIAVS---KLNEKKLLAAGSA 242 (270)
Q Consensus 211 kKRe~FReAF~gFDp~kVA---~~~E~~Ie~Ll~d 242 (270)
.-.+.++++|..|| ..=- .++-+++..++..
T Consensus 6 ~~~~~l~~~F~~~D-~~dG~~g~Is~~EL~~~l~~ 39 (92)
T 3rm1_A 6 KAVVALIDVFHQYS-GREGDKHKLKKSELKELINN 39 (92)
T ss_dssp HHHHHHHHHHHHHH-TSSSSTTSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-cCCCCcCeECHHHHHHHHHH
Confidence 34466777777777 4333 6667777666554
No 97
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=20.86 E-value=35 Score=23.04 Aligned_cols=43 Identities=16% Similarity=0.152 Sum_probs=24.1
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAII 256 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI 256 (270)
.+.++++|..||.+.=-.++-+++..++..-+ -.+...|..++
T Consensus 10 ~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g-~~~~~~~~~~~ 52 (86)
T 2opo_A 10 IADRERIFKRFDTNGDGKISSSELGDALKTLG-SVTPDEVRRMM 52 (86)
T ss_dssp HHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC-CCCHHHHHHHH
Confidence 35577777777776655566666665554433 23333444443
No 98
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=20.69 E-value=24 Score=26.73 Aligned_cols=8 Identities=13% Similarity=-0.093 Sum_probs=3.3
Q ss_pred CHHHHHHh
Q 024277 232 NEKKLLAA 239 (270)
Q Consensus 232 ~E~~Ie~L 239 (270)
++++++.+
T Consensus 54 ~~~el~~i 61 (110)
T 1iq3_A 54 SIPELSYI 61 (110)
T ss_dssp SSCCHHHH
T ss_pred CHHHHHHH
Confidence 34444443
No 99
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=20.23 E-value=31 Score=26.97 Aligned_cols=44 Identities=16% Similarity=0.172 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHH
Q 024277 214 HIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIE 257 (270)
Q Consensus 214 e~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~ 257 (270)
+.+++||.-||.+.=-.++-+++..++..-+.-.+..-|..++.
T Consensus 85 ~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~ 128 (159)
T 3i5g_C 85 DEFMEAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 55788999999887777777777777666555556666666654
No 100
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=20.15 E-value=72 Score=23.51 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=32.0
Q ss_pred HHHHHHHhcCCCHHHHhcCCHHHHHHhcccchhhcchhHHHHHHHH
Q 024277 213 RHIFREVFVGFDPIAVSKLNEKKLLAAGSAASSLLSELKLRAIIEN 258 (270)
Q Consensus 213 Re~FReAF~gFDp~kVA~~~E~~Ie~Ll~d~~IIRNr~KI~AVI~N 258 (270)
.+.++++|.-||.+.=-.++-+++..++..-+.-.....|..++..
T Consensus 78 ~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~ 123 (143)
T 2obh_A 78 KEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDE 123 (143)
T ss_dssp HHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4578899999999877778888888776544333445556666543
Done!