Query 024280
Match_columns 269
No_of_seqs 213 out of 2197
Neff 7.0
Searched_HMMs 46136
Date Fri Mar 29 03:24:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024280.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024280hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02723 3-mercaptopyruvate su 100.0 2E-39 4.3E-44 300.2 18.4 215 54-269 1-216 (320)
2 COG2897 SseA Rhodanese-related 100.0 1E-36 2.2E-41 276.1 15.3 176 72-269 7-182 (285)
3 PRK11493 sseA 3-mercaptopyruva 100.0 2.6E-32 5.6E-37 248.2 18.1 175 75-269 4-179 (281)
4 PRK09629 bifunctional thiosulf 100.0 4.4E-32 9.4E-37 269.4 18.8 167 74-269 7-173 (610)
5 KOG1529 Mercaptopyruvate sulfu 100.0 6.2E-31 1.4E-35 234.7 13.1 178 74-269 3-183 (286)
6 cd01445 TST_Repeats Thiosulfat 99.9 7E-27 1.5E-31 191.8 13.0 119 78-197 1-137 (138)
7 cd01448 TST_Repeat_1 Thiosulfa 99.9 3.1E-24 6.8E-29 171.1 13.1 122 77-200 1-122 (122)
8 cd01449 TST_Repeat_2 Thiosulfa 99.9 8.8E-23 1.9E-27 161.5 10.6 107 78-198 1-118 (118)
9 cd01519 RHOD_HSP67B2 Member of 99.9 1.7E-22 3.7E-27 156.8 10.3 104 79-198 2-106 (106)
10 TIGR03865 PQQ_CXXCW PQQ-depend 99.9 4.5E-22 9.8E-27 167.5 12.6 118 75-203 35-162 (162)
11 PLN02723 3-mercaptopyruvate su 99.9 1.8E-21 3.9E-26 180.3 12.0 129 74-207 188-319 (320)
12 cd01520 RHOD_YbbB Member of th 99.9 5.2E-22 1.1E-26 160.5 7.4 109 78-198 1-126 (128)
13 cd01533 4RHOD_Repeat_2 Member 99.9 2.9E-21 6.3E-26 151.4 11.1 98 76-200 10-109 (109)
14 cd01525 RHOD_Kc Member of the 99.8 9E-21 2E-25 147.0 9.9 102 78-197 1-104 (105)
15 cd01518 RHOD_YceA Member of th 99.8 9.9E-21 2.1E-25 146.3 9.5 99 76-197 2-100 (101)
16 smart00450 RHOD Rhodanese Homo 99.8 3.6E-20 7.9E-25 139.7 10.2 99 89-202 2-100 (100)
17 PRK11493 sseA 3-mercaptopyruva 99.8 4.8E-20 1E-24 167.7 12.2 127 74-206 151-280 (281)
18 PRK09629 bifunctional thiosulf 99.8 5.3E-20 1.1E-24 183.3 13.4 129 73-207 144-273 (610)
19 cd01447 Polysulfide_ST Polysul 99.8 6.3E-20 1.4E-24 141.3 9.7 102 78-200 1-103 (103)
20 cd01527 RHOD_YgaP Member of th 99.8 9.3E-20 2E-24 140.1 10.5 97 77-203 3-99 (99)
21 PRK00162 glpE thiosulfate sulf 99.8 1.2E-19 2.5E-24 142.1 10.7 102 76-206 5-106 (108)
22 PF00581 Rhodanese: Rhodanese- 99.8 1E-19 2.2E-24 141.3 10.0 107 79-199 1-113 (113)
23 cd01521 RHOD_PspE2 Member of t 99.8 9.9E-20 2.1E-24 143.1 9.4 100 76-203 8-110 (110)
24 cd01526 RHOD_ThiF Member of th 99.8 1.5E-19 3.2E-24 144.7 9.7 110 74-202 6-117 (122)
25 COG2897 SseA Rhodanese-related 99.8 3.1E-19 6.8E-24 162.1 12.8 124 70-207 150-284 (285)
26 cd01534 4RHOD_Repeat_3 Member 99.8 2.5E-19 5.3E-24 137.1 9.6 93 78-198 1-95 (95)
27 PLN02160 thiosulfate sulfurtra 99.8 8E-19 1.7E-23 143.7 12.7 114 76-207 15-130 (136)
28 cd01528 RHOD_2 Member of the R 99.8 4.5E-19 9.8E-24 137.0 10.3 94 78-198 2-98 (101)
29 cd01529 4RHOD_Repeats Member o 99.8 8.3E-19 1.8E-23 134.3 9.6 94 80-198 3-96 (96)
30 cd01530 Cdc25 Cdc25 phosphatas 99.8 9.2E-19 2E-23 140.5 9.0 98 77-197 3-120 (121)
31 cd01444 GlpE_ST GlpE sulfurtra 99.8 1.8E-18 3.8E-23 131.7 9.9 91 78-197 2-95 (96)
32 cd01524 RHOD_Pyr_redox Member 99.8 2.2E-18 4.7E-23 130.6 10.1 89 78-197 1-89 (90)
33 cd01535 4RHOD_Repeat_4 Member 99.8 3.7E-18 8.1E-23 141.2 11.2 97 83-208 2-99 (145)
34 cd01523 RHOD_Lact_B Member of 99.8 3.4E-18 7.4E-23 131.7 9.8 98 78-197 1-99 (100)
35 cd01522 RHOD_1 Member of the R 99.8 3.1E-18 6.7E-23 136.4 8.9 103 78-199 1-105 (117)
36 PRK11784 tRNA 2-selenouridine 99.8 6.4E-18 1.4E-22 157.9 11.8 157 79-269 4-176 (345)
37 PRK08762 molybdopterin biosynt 99.7 1.1E-17 2.3E-22 158.3 11.2 105 76-208 3-107 (376)
38 cd01532 4RHOD_Repeat_1 Member 99.7 1.1E-17 2.3E-22 127.5 9.0 87 86-198 5-92 (92)
39 TIGR03167 tRNA_sel_U_synt tRNA 99.7 2.2E-17 4.8E-22 152.3 12.8 143 91-268 2-161 (311)
40 cd01531 Acr2p Eukaryotic arsen 99.7 8.5E-18 1.8E-22 132.6 8.7 99 76-198 2-111 (113)
41 KOG1530 Rhodanese-related sulf 99.7 1.7E-17 3.8E-22 132.6 10.0 113 76-204 23-135 (136)
42 cd01446 DSP_MapKP N-terminal r 99.7 6E-18 1.3E-22 137.0 7.0 109 77-198 1-126 (132)
43 cd00158 RHOD Rhodanese Homolog 99.7 1.3E-17 2.8E-22 124.1 7.0 88 83-197 2-89 (89)
44 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 3E-17 6.5E-22 129.5 8.4 97 77-197 3-112 (113)
45 PRK00142 putative rhodanese-re 99.7 2.3E-16 5E-21 145.9 11.1 102 74-199 110-212 (314)
46 TIGR02981 phageshock_pspE phag 99.7 6E-16 1.3E-20 120.6 9.4 81 90-198 17-97 (101)
47 PRK01415 hypothetical protein; 99.7 5.2E-16 1.1E-20 138.6 10.3 103 74-200 110-213 (247)
48 PRK10287 thiosulfate:cyanide s 99.7 8.1E-16 1.8E-20 120.4 10.0 82 89-198 18-99 (104)
49 COG0607 PspE Rhodanese-related 99.6 1.3E-15 2.8E-20 118.2 9.5 99 81-206 10-109 (110)
50 PRK05320 rhodanese superfamily 99.6 3.5E-15 7.5E-20 134.4 10.3 100 75-198 109-215 (257)
51 PRK07878 molybdopterin biosynt 99.6 4.2E-15 9E-20 141.4 10.8 101 74-201 285-386 (392)
52 PRK05597 molybdopterin biosynt 99.5 1.7E-14 3.6E-19 135.7 9.6 95 75-198 260-354 (355)
53 PRK07411 hypothetical protein; 99.5 4.4E-14 9.5E-19 134.4 9.9 103 75-202 281-385 (390)
54 PRK05600 thiamine biosynthesis 99.3 3.8E-12 8.2E-17 120.3 8.1 93 77-194 272-369 (370)
55 KOG1529 Mercaptopyruvate sulfu 99.2 3.7E-11 8E-16 108.1 8.5 118 75-198 155-275 (286)
56 COG1054 Predicted sulfurtransf 99.1 2.6E-10 5.7E-15 103.2 6.4 101 75-198 112-212 (308)
57 KOG3772 M-phase inducer phosph 98.9 1.2E-09 2.6E-14 100.2 5.9 99 76-199 156-276 (325)
58 PRK01269 tRNA s(4)U8 sulfurtra 98.9 5.5E-09 1.2E-13 102.1 9.3 72 90-190 406-481 (482)
59 KOG2017 Molybdopterin synthase 98.6 3E-08 6.5E-13 91.6 4.6 103 74-199 315-419 (427)
60 COG5105 MIH1 Mitotic inducer, 98.1 4.1E-06 8.9E-11 76.7 6.2 98 76-198 242-357 (427)
61 PRK00142 putative rhodanese-re 97.6 1.1E-05 2.3E-10 75.0 -1.0 43 74-126 12-54 (314)
62 KOG1717 Dual specificity phosp 96.5 0.0022 4.8E-08 57.9 3.3 106 77-199 5-124 (343)
63 PF04273 DUF442: Putative phos 91.0 1.1 2.5E-05 35.2 7.1 87 77-179 14-106 (110)
64 TIGR01244 conserved hypothetic 90.6 1.8 3.9E-05 35.0 8.2 111 77-204 14-129 (135)
65 KOG3636 Uncharacterized conser 89.5 1.3 2.7E-05 43.2 7.2 100 78-197 309-427 (669)
66 KOG1530 Rhodanese-related sulf 89.1 0.24 5.2E-06 40.3 1.8 27 243-269 23-49 (136)
67 TIGR03865 PQQ_CXXCW PQQ-depend 84.7 1.4 3.1E-05 36.8 4.2 31 238-268 31-61 (162)
68 KOG1093 Predicted protein kina 83.7 0.22 4.7E-06 49.6 -1.3 96 76-195 622-717 (725)
69 TIGR03167 tRNA_sel_U_synt tRNA 82.0 5.3 0.00011 37.2 7.2 36 74-118 134-172 (311)
70 PF09992 DUF2233: Predicted pe 71.7 2.7 5.9E-05 34.9 2.0 46 152-197 95-144 (170)
71 PLN02918 pyridoxine (pyridoxam 68.5 22 0.00048 35.7 7.9 31 158-189 136-168 (544)
72 PLN02727 NAD kinase 67.0 40 0.00086 36.1 9.6 113 48-170 240-354 (986)
73 COG2603 Predicted ATPase [Gene 61.4 5.7 0.00012 36.8 2.1 36 81-126 6-41 (334)
74 cd00127 DSPc Dual specificity 58.1 24 0.00052 27.6 5.0 29 155-183 79-109 (139)
75 PRK05600 thiamine biosynthesis 52.4 9.4 0.0002 36.3 2.1 26 244-269 272-297 (370)
76 PRK01415 hypothetical protein; 51.3 12 0.00026 33.7 2.5 29 241-269 110-138 (247)
77 COG3453 Uncharacterized protei 48.7 36 0.00079 27.5 4.5 83 77-174 15-103 (130)
78 PRK12550 shikimate 5-dehydroge 47.6 44 0.00095 30.4 5.6 50 142-193 107-156 (272)
79 COG2453 CDC14 Predicted protei 43.6 43 0.00093 28.3 4.6 48 139-186 85-136 (180)
80 smart00195 DSPc Dual specifici 41.1 64 0.0014 25.3 5.1 36 147-183 69-106 (138)
81 cd02071 MM_CoA_mut_B12_BD meth 41.0 1.7E+02 0.0037 22.8 7.8 58 140-201 37-103 (122)
82 PF13242 Hydrolase_like: HAD-h 40.1 67 0.0015 22.6 4.5 46 140-191 5-51 (75)
83 TIGR02190 GlrX-dom Glutaredoxi 40.1 53 0.0012 23.4 4.0 31 154-184 4-34 (79)
84 TIGR00640 acid_CoA_mut_C methy 39.7 1.9E+02 0.004 23.3 7.5 59 139-201 39-106 (132)
85 COG0169 AroE Shikimate 5-dehyd 33.9 92 0.002 28.6 5.4 51 142-194 108-161 (283)
86 PTZ00393 protein tyrosine phos 33.5 1.3E+02 0.0027 27.2 6.0 47 138-184 149-198 (241)
87 PRK07878 molybdopterin biosynt 32.8 30 0.00065 33.1 2.1 29 241-269 285-314 (392)
88 cd03029 GRX_hybridPRX5 Glutare 32.1 71 0.0015 22.1 3.5 26 159-184 2-27 (72)
89 PF05706 CDKN3: Cyclin-depende 31.4 58 0.0013 27.7 3.4 28 155-182 131-159 (168)
90 TIGR02189 GlrX-like_plant Glut 30.1 78 0.0017 23.9 3.7 35 156-190 6-41 (99)
91 PF07879 PHB_acc_N: PHB/PHA ac 29.9 60 0.0013 23.1 2.7 27 242-268 17-44 (64)
92 PRK07411 hypothetical protein; 29.7 31 0.00068 33.0 1.7 27 243-269 282-310 (390)
93 PF00782 DSPc: Dual specificit 29.6 64 0.0014 25.0 3.3 42 142-184 59-102 (133)
94 PF08874 DUF1835: Domain of un 28.8 2E+02 0.0043 22.3 6.0 47 144-190 72-121 (124)
95 PF03610 EIIA-man: PTS system 28.5 2.1E+02 0.0045 22.0 6.0 46 143-191 45-90 (116)
96 PRK05320 rhodanese superfamily 28.4 35 0.00076 30.8 1.7 26 244-269 111-142 (257)
97 COG0162 TyrS Tyrosyl-tRNA synt 26.4 83 0.0018 30.4 3.9 55 138-199 17-80 (401)
98 PRK05852 acyl-CoA synthetase; 25.5 1.6E+02 0.0036 28.4 6.0 51 142-194 53-103 (534)
99 TIGR01796 CM_mono_aroH monofun 25.3 62 0.0013 25.9 2.4 66 117-191 4-74 (117)
100 TIGR02804 ExbD_2 TonB system t 24.9 3.1E+02 0.0067 21.3 6.4 47 141-189 70-118 (121)
101 TIGR01809 Shik-DH-AROM shikima 24.5 2E+02 0.0044 26.0 6.0 50 142-193 107-159 (282)
102 COG4681 Uncharacterized protei 24.4 1.1E+02 0.0023 25.8 3.7 47 138-191 85-136 (181)
103 COG4822 CbiK Cobalamin biosynt 24.3 1.9E+02 0.0042 25.8 5.4 35 155-189 135-173 (265)
104 PF07152 YaeQ: YaeQ protein; 23.7 1.7E+02 0.0036 25.0 4.9 45 138-190 85-132 (174)
105 TIGR01656 Histidinol-ppas hist 23.7 1.3E+02 0.0028 24.0 4.1 48 138-191 100-147 (147)
106 COG1054 Predicted sulfurtransf 23.6 86 0.0019 29.2 3.3 26 242-267 112-137 (308)
107 PF01488 Shikimate_DH: Shikima 23.6 1.9E+02 0.004 23.0 5.0 41 156-198 11-51 (135)
108 KOG1386 Nucleoside phosphatase 23.5 44 0.00094 33.1 1.4 15 109-123 70-84 (501)
109 PTZ00242 protein tyrosine phos 22.8 2E+02 0.0043 23.9 5.2 19 155-173 96-114 (166)
110 PRK12749 quinate/shikimate deh 22.7 2.1E+02 0.0046 26.1 5.7 49 142-192 108-157 (288)
111 COG2185 Sbm Methylmalonyl-CoA 22.5 2.5E+02 0.0055 23.2 5.5 53 137-193 47-102 (143)
112 TIGR00762 DegV EDD domain prot 22.5 2.1E+02 0.0046 25.7 5.7 56 137-193 59-116 (275)
113 COG1011 Predicted hydrolase (H 22.0 1.7E+02 0.0037 24.6 4.8 52 137-193 152-203 (229)
114 KOG3109 Haloacid dehalogenase- 21.7 2.2E+02 0.0047 25.6 5.2 46 139-189 160-205 (244)
115 cd01078 NAD_bind_H4MPT_DH NADP 21.7 3.1E+02 0.0068 22.8 6.3 48 143-192 13-61 (194)
116 cd01065 NAD_bind_Shikimate_DH 21.6 2.9E+02 0.0063 21.7 5.8 48 144-193 5-53 (155)
117 PRK14027 quinate/shikimate deh 21.5 2.2E+02 0.0047 26.0 5.6 49 143-193 112-161 (283)
118 KOG0333 U5 snRNP-like RNA heli 21.3 1.6E+02 0.0035 29.8 4.8 55 137-193 497-551 (673)
119 cd01486 Apg7 Apg7 is an E1-lik 21.0 3.2E+02 0.007 25.5 6.5 66 160-228 2-70 (307)
120 PF00501 AMP-binding: AMP-bind 21.0 2E+02 0.0043 26.5 5.3 41 143-184 32-72 (417)
121 KOG2015 NEDD8-activating compl 20.9 2.2E+02 0.0048 27.1 5.4 51 138-197 28-78 (422)
122 PRK11070 ssDNA exonuclease Rec 20.9 1.3E+02 0.0028 30.5 4.3 50 138-188 51-103 (575)
123 smart00226 LMWPc Low molecular 20.9 1.2E+02 0.0026 24.0 3.4 37 160-196 1-37 (140)
124 cd02976 NrdH NrdH-redoxin (Nrd 20.6 1.5E+02 0.0032 19.6 3.4 26 159-184 1-26 (73)
125 cd03027 GRX_DEP Glutaredoxin ( 20.6 1.4E+02 0.0031 20.6 3.3 26 159-184 2-27 (73)
126 PF01451 LMWPc: Low molecular 20.6 48 0.001 26.2 0.9 37 160-196 1-41 (138)
127 PRK13382 acyl-CoA synthetase; 20.4 2.4E+02 0.0052 27.4 6.0 50 142-193 78-127 (537)
128 PRK13812 orotate phosphoribosy 20.4 3.9E+02 0.0084 22.5 6.5 52 154-206 104-164 (176)
129 COG2518 Pcm Protein-L-isoaspar 20.2 2.1E+02 0.0046 25.1 4.9 56 143-198 59-135 (209)
130 PRK12548 shikimate 5-dehydroge 20.1 2.6E+02 0.0057 25.3 5.8 49 142-192 110-159 (289)
131 cd03041 GST_N_2GST_N GST_N fam 20.1 1.3E+02 0.0027 21.2 3.0 25 160-184 2-26 (77)
132 PRK11024 colicin uptake protei 20.0 4E+02 0.0088 21.3 6.4 48 142-189 87-137 (141)
No 1
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=100.00 E-value=2e-39 Score=300.18 Aligned_cols=215 Identities=86% Similarity=1.368 Sum_probs=186.1
Q ss_pred eeeccccCCCCCcccCCCCCCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccC
Q 024280 54 VMSSLAAGRRADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT 133 (269)
Q Consensus 54 ~~~s~~~~~~~~~~~~~~~~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~ 133 (269)
|.|| .+.+.+.+++.++..+..+|+++||++++++++++|||+|+.++.+.+++..+|..||||||+|+|+..+.+...
T Consensus 1 ~~~~-~~~~~~~~~~~~~~~~~~lvs~~~L~~~l~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~ 79 (320)
T PLN02723 1 MASS-GSETKANYSTQSISTNEPVVSVDWLHANLREPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTT 79 (320)
T ss_pred CCcc-chhhcccCcccccccCCceecHHHHHHHhcCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCC
Confidence 3455 788999999999999899999999999998888999999987766544445789999999999999988877666
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCCcchHH
Q 024280 134 NLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAIL 213 (269)
Q Consensus 134 ~~~~~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~~~~~~ 213 (269)
..++++|+.+.|+++|+++||+++++|||||+.|.++++|+||+|+++||+||++||||+.+|+++|+|+++..+.+.+.
T Consensus 80 ~~~~~lp~~~~~~~~l~~~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~~~~~~~~ 159 (320)
T PLN02723 80 DLPHMLPSEEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESSASGDAIL 159 (320)
T ss_pred CcCCCCCCHHHHHHHHHHcCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccCCCccccc
Confidence 78899999999999999999999999999999888889999999999999999999999999999999999876544444
Q ss_pred HhhhhHHHHHHhhcCC-CCCcccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024280 214 KASAASEAIEKVYQGQ-VGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 269 (269)
Q Consensus 214 ~~~~~~e~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~iiDaRs~~r 269 (269)
++.+++|.+++.|+++ +.+.+|...++++++++.++|++++++++.+|||+|+++|
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~iiD~R~~~e 216 (320)
T PLN02723 160 KASAASEAIEKVYQGQTVSPITFQTKFQPHLVWTLEQVKKNIEDKTYQHIDARSKAR 216 (320)
T ss_pred cccccccccccccccCCCCCCcccccCCccceecHHHHHHhhcCCCeEEEECCCccc
Confidence 4445566666666553 5667888899999999999999999888899999999754
No 2
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-36 Score=276.10 Aligned_cols=176 Identities=43% Similarity=0.763 Sum_probs=159.7
Q ss_pred CCCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHH
Q 024280 72 SPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (269)
Q Consensus 72 ~~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~ 151 (269)
.....+|+++||.+++++++++++|+|+..+... ...+|..+|||||++++++.+.+....+++|+|++++|+++|++
T Consensus 7 ~~~~~lVs~~wl~~~l~~~~~~~~d~~~~~~~~~--~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~ 84 (285)
T COG2897 7 MSSEFLVSPDWLAENLDDPAVVIVDARIILPDPD--DAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGE 84 (285)
T ss_pred cCcceEEcHHHHHhhccccccccCceEEEeCCcc--hHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHH
Confidence 3456899999999999988888888887776653 26899999999999999998766666689999999999999999
Q ss_pred cCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCCcchHHHhhhhHHHHHHhhcCCCC
Q 024280 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVG 231 (269)
Q Consensus 152 lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 231 (269)
+||++|++||+|++.+.++|+|+||+|+++||+||++||||+.+|+++|+|+++.++ +..
T Consensus 85 ~GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~~--------------------~~~ 144 (285)
T COG2897 85 LGIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEPP--------------------EPP 144 (285)
T ss_pred cCCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCCC--------------------CCC
Confidence 999999999999999999999999999999999999999999999999999999765 256
Q ss_pred CcccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024280 232 PTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 269 (269)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~l~~~~~~iiDaRs~~r 269 (269)
+..|..+++...+++.++++..++.+..+|||+|+++|
T Consensus 145 ~~~f~~~~~~~~~~~~~~~~~~~~~~~~~liDaR~~~r 182 (285)
T COG2897 145 PTTFSAKYNVKAVVDATLVADALEVPAVLLIDARSPER 182 (285)
T ss_pred CccccccCCccccCCHHHHHHHhcCCCeEEEecCCHHH
Confidence 78899999999999999999999999999999999875
No 3
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=100.00 E-value=2.6e-32 Score=248.23 Aligned_cols=175 Identities=39% Similarity=0.753 Sum_probs=151.5
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCC-CCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcC
Q 024280 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQR-NPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (269)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~-~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lG 153 (269)
..+|+++||++++++++++|||+|+....... +...+|..||||||+|+|+..+.....+.++++|+.++|+++++++|
T Consensus 4 ~~lvs~~~l~~~l~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 83 (281)
T PRK11493 4 TWFVAADWLAEHIDDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMRELG 83 (281)
T ss_pred CcccCHHHHHHhcCCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHHHcC
Confidence 36899999999998888999999954333211 12578999999999999998876666667789999999999999999
Q ss_pred CCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCCcchHHHhhhhHHHHHHhhcCCCCCc
Q 024280 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPT 233 (269)
Q Consensus 154 I~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 233 (269)
|+++++|||||.++.++++|++|+|+.+||+||++|+||+.+|.++|+|+++..+ ++.+.
T Consensus 84 i~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~--------------------~~~~~ 143 (281)
T PRK11493 84 VNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEGAV--------------------ELPEG 143 (281)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCCCC--------------------CCCCC
Confidence 9999999999998777789999999999999999999999999999999998764 24566
Q ss_pred ccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024280 234 TFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 269 (269)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~~l~~~~~~iiDaRs~~r 269 (269)
+|...++++.++++++++..+++++.+|||+|+++|
T Consensus 144 ~~~~~~~~~~~~~~~~v~~~~~~~~~~llD~R~~~e 179 (281)
T PRK11493 144 EFNAAFNPEAVVRLTDVLLASHEKTAQIVDARPAAR 179 (281)
T ss_pred cccccCCccceecHHHHHHhhcCCCcEEEeCCCccc
Confidence 788888889999999999888877889999999764
No 4
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=100.00 E-value=4.4e-32 Score=269.43 Aligned_cols=167 Identities=25% Similarity=0.379 Sum_probs=147.9
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcC
Q 024280 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lG 153 (269)
...+|+++||++++++++++|||+| ..++|..||||||+|+|++.+.......++++|+.++|++.++++|
T Consensus 7 ~~~lIs~~eL~~~l~~~~vvIIDvR---------~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lG 77 (610)
T PRK09629 7 LSLVIEPNDLLERLDAPELILVDLT---------SSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELG 77 (610)
T ss_pred CCceecHHHHHHHhcCCCEEEEECC---------ChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcC
Confidence 5579999999999988889999999 5789999999999999987654434456789999999999999999
Q ss_pred CCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCCcchHHHhhhhHHHHHHhhcCCCCCc
Q 024280 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPT 233 (269)
Q Consensus 154 I~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 233 (269)
|+++++|||||+.+..+|+|+||+|+++||++|++||||+.+|+.+|+|++++.+. +.+.
T Consensus 78 I~~d~~VVvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~~~~~--------------------~~~~ 137 (610)
T PRK09629 78 HNPDAVYVVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLSTDVPP--------------------VAGG 137 (610)
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCccccCCCC--------------------CCCc
Confidence 99999999999988777999999999999999999999999999999999987541 3345
Q ss_pred ccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024280 234 TFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 269 (269)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~~l~~~~~~iiDaRs~~r 269 (269)
.|...++++.+++.++|++++++++++|||+|+++|
T Consensus 138 ~~~~~~~~~~~v~~e~v~~~l~~~~~~iIDaR~~~e 173 (610)
T PRK09629 138 PVTLTLHDEPTATREYLQSRLGAADLAIWDARAPTE 173 (610)
T ss_pred ceeeccCCcccccHHHHHHhhCCCCcEEEECCCccc
Confidence 677777888899999999999888899999999875
No 5
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.97 E-value=6.2e-31 Score=234.72 Aligned_cols=178 Identities=43% Similarity=0.773 Sum_probs=161.2
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcC
Q 024280 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lG 153 (269)
.+.+|+++|+.+++.+..++|||+.|+++...++...+|..-|||||++|+++.+.++.++.++|+|..+.|++.++.+|
T Consensus 3 ~~~iv~~~~v~~~~~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~lG 82 (286)
T KOG1529|consen 3 VDSIVSVKWVMENLGNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASRLG 82 (286)
T ss_pred cccccChHHHHHhCcCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHhcC
Confidence 45789999999999988899999999999877777889999999999999999999999999999999999999999999
Q ss_pred CCCCCcEEEeCC--CChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCCcchHHHhhhhHHHHHHhhcCCCC
Q 024280 154 LENKDGLVVYDG--KGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVG 231 (269)
Q Consensus 154 I~~d~~VVvY~~--~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 231 (269)
|++++.||||++ .|+.+|+|+||+|+.+||++|.+||||+.+|+++|+|+++..+. .. ..
T Consensus 83 i~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~~~--------------~p----~~ 144 (286)
T KOG1529|consen 83 VDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSKVE--------------TP----YS 144 (286)
T ss_pred CCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccccc--------------CC----CC
Confidence 999999999999 89999999999999999999999999999999999999998751 00 13
Q ss_pred CcccccccCCccccCHHHHHHH-hhCCCcEEEccCCCCC
Q 024280 232 PTTFQTKFQPHLIWTLEQVKRN-IEEGTYQLVDARSKAR 269 (269)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~v~~~-l~~~~~~iiDaRs~~r 269 (269)
+..|...++++++++++++..+ .+.+++++||+|+.+|
T Consensus 145 ~~~~~~~~d~~il~~~edi~~n~~~~~~~~~~DaRs~gr 183 (286)
T KOG1529|consen 145 PIVFVASLDNSILATLEDIPFNNLATKNFQYLDARSKGR 183 (286)
T ss_pred CccchhhcchHHHHHHhhccccccccccceeeecccccc
Confidence 4556678999999999999987 7777899999999875
No 6
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.94 E-value=7e-27 Score=191.83 Aligned_cols=119 Identities=37% Similarity=0.544 Sum_probs=103.5
Q ss_pred ccHHHHHHhhC----CCCcEEEEeccCCCCCCCCCHhhHhh------------CCCCCCeeccccccccccCCCCCCCCC
Q 024280 78 VSVDWLHANLR----EPDLKVLDASWYMPDEQRNPFQEYQV------------AHIPGALFFDVDGVADRTTNLPHMLPS 141 (269)
Q Consensus 78 Is~~eL~~~l~----~~~~vIIDvR~~~~~~~~~~~~ey~~------------gHIPGAi~ip~~~l~~~~~~~~~~lp~ 141 (269)
||++||+++++ +++++|||+|+.+++. ++..++|.. ||||||+|+|+..+.+.+....+++|+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~-~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~ 79 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGT-REARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPS 79 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccC-cchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCC
Confidence 68999999997 4679999999765543 233478887 999999999998776666667789999
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCCC--ChHHHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 142 EEAFAAAVSALGLENKDGLVVYDGK--GIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 142 ~~~f~~~l~~lGI~~d~~VVvY~~~--g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
.++|+++++.+||+++++||+||+. +...|+|+||+|+++||+||++||||+.+|+
T Consensus 80 ~~~~~~~~~~~GI~~~~~vVvY~~~~~~g~~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 80 EAEFAAMFEAKGIDLDKHLIATDGDDLGGFTACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHHcCCCCCCeEEEECCCCCcchHHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 9999999999999999999999975 4557999999999999999999999999996
No 7
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.92 E-value=3.1e-24 Score=171.09 Aligned_cols=122 Identities=54% Similarity=1.039 Sum_probs=102.8
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCC
Q 024280 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (269)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~ 156 (269)
+|++++|.+++.+++.+|||+|....+ ..+..+|..||||||+|+|+..+.....+..+++++.++|++.++.+|+++
T Consensus 1 ~i~~~~l~~~l~~~~~~ivDvR~~~~~--~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (122)
T cd01448 1 LVSPDWLAEHLDDPDVRILDARWYLPD--RDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGISN 78 (122)
T ss_pred CcCHHHHHHHhCCCCeEEEEeecCCCC--CchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCCC
Confidence 589999999998777899999932111 012278999999999999998765433345678999999999999999999
Q ss_pred CCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCC
Q 024280 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (269)
Q Consensus 157 d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G 200 (269)
+++|||||++|...|++++|+|+.+||+||++|+||+.+|.++|
T Consensus 79 ~~~vv~~c~~g~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 79 DDTVVVYDDGGGFFAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CCEEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 99999999986456999999999999999999999999999865
No 8
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.89 E-value=8.8e-23 Score=161.50 Aligned_cols=107 Identities=27% Similarity=0.490 Sum_probs=93.4
Q ss_pred ccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhh-----------CCCCCCeeccccccccccCCCCCCCCCHHHHH
Q 024280 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV-----------AHIPGALFFDVDGVADRTTNLPHMLPSEEAFA 146 (269)
Q Consensus 78 Is~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~-----------gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~ 146 (269)
|++++|.+++++++++|||+| +..+|.. ||||||+|+|+..+.... +.++..++|.
T Consensus 1 ~s~~~l~~~l~~~~~~iiDvR---------~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~~~----~~~~~~~~~~ 67 (118)
T cd01449 1 VTAEEVLANLDSGDVQLVDAR---------SPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLDED----GTFKSPEELR 67 (118)
T ss_pred CCHHHHHHhcCCCCcEEEeCC---------CHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcCCC----CCcCCHHHHH
Confidence 578999999876678999999 4566655 999999999998765422 5788899999
Q ss_pred HHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 147 AAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 147 ~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
+.+..+|++++++||+||++|. .|.+++|.|+.+||++|++|+||+.+|.+
T Consensus 68 ~~~~~~~~~~~~~iv~yc~~g~-~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 68 ALFAALGITPDKPVIVYCGSGV-TACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred HHHHHcCCCCCCCEEEECCcHH-HHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 9999999999999999999876 48999999999999999999999999973
No 9
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.88 E-value=1.7e-22 Score=156.76 Aligned_cols=104 Identities=21% Similarity=0.298 Sum_probs=91.7
Q ss_pred cHHHHHHhhC-CCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024280 79 SVDWLHANLR-EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (269)
Q Consensus 79 s~~eL~~~l~-~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d 157 (269)
|++++.++++ +++.+|||+| +..+|..||||||+|+|+..+.+ ...++.++|+++++.++++++
T Consensus 2 ~~~~~~~~l~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~~~~------~~~~~~~~~~~~~~~~~~~~~ 66 (106)
T cd01519 2 SFEEVKNLPNPHPNKVLIDVR---------EPEELKTGKIPGAINIPLSSLPD------ALALSEEEFEKKYGFPKPSKD 66 (106)
T ss_pred cHHHHHHhcCCCCCEEEEECC---------CHHHHhcCcCCCcEEechHHhhh------hhCCCHHHHHHHhcccCCCCC
Confidence 6789999887 6679999999 67899999999999999887532 234567889999999999999
Q ss_pred CcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 158 ~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
++||+||++|.+ +.+++++|+.+||+||++|+||+.+|.+
T Consensus 67 ~~ivv~c~~g~~-s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 67 KELIFYCKAGVR-SKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred CeEEEECCCcHH-HHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 999999999875 7899999999999999999999999963
No 10
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.88 E-value=4.5e-22 Score=167.53 Aligned_cols=118 Identities=18% Similarity=0.233 Sum_probs=91.7
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhh---------CCCCCCeeccccccccccCCCCCCCCCHHHH
Q 024280 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV---------AHIPGALFFDVDGVADRTTNLPHMLPSEEAF 145 (269)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~---------gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f 145 (269)
...|+++|+.+++++++.+|||||..... ..+|.. +|||||+|+|+..+.. +. -+..+.|
T Consensus 35 ~~~vs~~el~~~l~~~~~~lIDVR~~~~~-----~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~----l~--~~~~~~~ 103 (162)
T TIGR03865 35 ARVLDTEAAQALLARGPVALIDVYPRPPK-----PKNLLEGTVWRDEPRLNIPGSLWLPNTGYGN----LA--PAWQAYF 103 (162)
T ss_pred ccccCHHHHHHHHhCCCcEEEECCCCccc-----cccccccceeccccCCCCCCcEEecccCCCC----CC--CchhHHH
Confidence 46899999999998878999999931100 013433 5999999999643211 00 1233457
Q ss_pred HHHHHHcCC-CCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCce
Q 024280 146 AAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (269)
Q Consensus 146 ~~~l~~lGI-~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv 203 (269)
.+.++++++ +++++||+||++|+..+.+++|+|+.+||+||++|+||+.+|+.+|+|+
T Consensus 104 ~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 104 RRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 888877765 7999999999998866899999999999999999999999999999985
No 11
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.86 E-value=1.8e-21 Score=180.34 Aligned_cols=129 Identities=20% Similarity=0.275 Sum_probs=105.0
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCC--CCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHH
Q 024280 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQ--RNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~--~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~ 151 (269)
+..+++.+|+.+.+++++.+|||+|....... ..+...+..||||||+|+|+..+.+.+ +.+++.++|++.+.+
T Consensus 188 ~~~~~~~~~v~~~~~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~~~----~~~~~~~el~~~~~~ 263 (320)
T PLN02723 188 PHLVWTLEQVKKNIEDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLDSS----QTLLPAEELKKRFEQ 263 (320)
T ss_pred ccceecHHHHHHhhcCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcCCC----CCCCCHHHHHHHHHh
Confidence 45678999999999877889999993211110 011234578999999999998765433 468899999999999
Q ss_pred cCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhC-CCceecCC
Q 024280 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS-GYDVESSA 207 (269)
Q Consensus 152 lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~-G~pv~~~~ 207 (269)
+|++++++||+||++|.+ |++++|+|+.+||+||++|||||.+|... ++|++++.
T Consensus 264 ~gi~~~~~iv~yC~sG~~-A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~~ 319 (320)
T PLN02723 264 EGISLDSPIVASCGTGVT-ACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATST 319 (320)
T ss_pred cCCCCCCCEEEECCcHHH-HHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCCC
Confidence 999999999999999875 89999999999999999999999999985 67887653
No 12
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.86 E-value=5.2e-22 Score=160.45 Aligned_cols=109 Identities=23% Similarity=0.383 Sum_probs=82.4
Q ss_pred ccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccC-------C-------CCCCCCCHH
Q 024280 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT-------N-------LPHMLPSEE 143 (269)
Q Consensus 78 Is~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~-------~-------~~~~lp~~~ 143 (269)
||++||.++++ ++.+||||| ...+|..||||||+|||+..+..... . ++.++++ .
T Consensus 1 ~s~~el~~~l~-~~~~iiDvR---------~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 69 (128)
T cd01520 1 ITAEDLLALRK-ADGPLIDVR---------SPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVS-G 69 (128)
T ss_pred CCHHHHHHHHh-cCCEEEECC---------CHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHh-h
Confidence 68999999997 578999999 68999999999999999865321100 0 0011221 2
Q ss_pred HHHHHHH---HcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 144 AFAAAVS---ALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 144 ~f~~~l~---~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
.++++++ ..|++++++|||||..++.+|.+++|+|+.+|| +|++|+||+.+|+.
T Consensus 70 ~~~~~~~~~~~~~i~~~~~vvvyC~~~G~rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 70 KLKRILNEAWEARLERDPKLLIYCARGGMRSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred hHHHHHHHHHHhccCCCCeEEEEeCCCCccHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 3444444 358999999999997433348899999999999 59999999999985
No 13
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.86 E-value=2.9e-21 Score=151.37 Aligned_cols=98 Identities=27% Similarity=0.271 Sum_probs=85.3
Q ss_pred CcccHHHHHHhhCCC-CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCC
Q 024280 76 PVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (269)
Q Consensus 76 ~lIs~~eL~~~l~~~-~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI 154 (269)
..|++++|.+.++++ +.+|||+| +..+|..||||||+|+|+.. |...++.++.
T Consensus 10 ~~i~~~~l~~~~~~~~~~~liDvR---------~~~e~~~ghIpgainip~~~-----------------l~~~~~~l~~ 63 (109)
T cd01533 10 PSVSADELAALQARGAPLVVLDGR---------RFDEYRKMTIPGSVSCPGAE-----------------LVLRVGELAP 63 (109)
T ss_pred CcCCHHHHHHHHhcCCCcEEEeCC---------CHHHHhcCcCCCceeCCHHH-----------------HHHHHHhcCC
Confidence 479999999988755 57899999 68999999999999999754 4456677777
Q ss_pred CCCCcEEEeCCCChHHHHHHHHHHHHcCCCc-EEEccCcHHHHHhCC
Q 024280 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLPRWRASG 200 (269)
Q Consensus 155 ~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~n-V~vLdGG~~~W~~~G 200 (269)
+++++|||||.+|.+ +..+++.|+.+||+| |++|+||+.+|..+|
T Consensus 64 ~~~~~ivv~C~~G~r-s~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 64 DPRTPIVVNCAGRTR-SIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred CCCCeEEEECCCCch-HHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 888999999999986 678899999999998 999999999999876
No 14
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.84 E-value=9e-21 Score=146.95 Aligned_cols=102 Identities=21% Similarity=0.243 Sum_probs=80.8
Q ss_pred ccHHHHHHhhCCC--CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCC
Q 024280 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (269)
Q Consensus 78 Is~~eL~~~l~~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~ 155 (269)
||++||+++++++ +++|||+| +..+|..||||||+|+|+..+...... ...+|..+.|.. .
T Consensus 1 is~~~l~~~l~~~~~~~~liDvR---------~~~e~~~ghIpgA~~ip~~~~~~~~~~-~~~~~~~~~~~~-------~ 63 (105)
T cd01525 1 ISVYDVIRLLDNSPAKLAAVDIR---------SSPDFRRGHIEGSINIPFSSVFLKEGE-LEQLPTVPRLEN-------Y 63 (105)
T ss_pred CCHHHHHHHHhCCCCCeEEEECC---------CHHHHhCCccCCCEeCCHHHhcccccc-cccccchHHHHh-------h
Confidence 6899999999753 68999999 578999999999999999875432111 133444444433 2
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
.+++||+||..|.+ +.+++++|+.+||+||++|+||+.+|+
T Consensus 64 ~~~~vv~~c~~g~~-s~~~a~~L~~~G~~~v~~l~GG~~a~~ 104 (105)
T cd01525 64 KGKIIVIVSHSHKH-AALFAAFLVKCGVPRVCILDGGINALK 104 (105)
T ss_pred cCCeEEEEeCCCcc-HHHHHHHHHHcCCCCEEEEeCcHHHhc
Confidence 37889999999886 778888999999999999999999996
No 15
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.84 E-value=9.9e-21 Score=146.28 Aligned_cols=99 Identities=22% Similarity=0.319 Sum_probs=79.7
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCC
Q 024280 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (269)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~ 155 (269)
..|++++|.+++++++++||||| +..+|..||||||+|+|+..+... ...+.+.+ ..+
T Consensus 2 ~~is~~~l~~~~~~~~~~iiDvR---------~~~e~~~ghi~gA~~ip~~~~~~~----------~~~~~~~~---~~~ 59 (101)
T cd01518 2 TYLSPAEWNELLEDPEVVLLDVR---------NDYEYDIGHFKGAVNPDVDTFREF----------PFWLDENL---DLL 59 (101)
T ss_pred CcCCHHHHHHHHcCCCEEEEEcC---------ChhhhhcCEeccccCCCcccHhHh----------HHHHHhhh---hhc
Confidence 46899999999987789999999 679999999999999998765321 01122221 237
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
++++|||||.+|.+ +..+++.|+.+||+||++|+||+.+|.
T Consensus 60 ~~~~ivvyC~~G~r-s~~a~~~L~~~G~~~v~~l~GG~~~W~ 100 (101)
T cd01518 60 KGKKVLMYCTGGIR-CEKASAYLKERGFKNVYQLKGGILKYL 100 (101)
T ss_pred CCCEEEEECCCchh-HHHHHHHHHHhCCcceeeechhHHHHh
Confidence 88999999999987 455667789999999999999999997
No 16
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.83 E-value=3.6e-20 Score=139.71 Aligned_cols=99 Identities=32% Similarity=0.603 Sum_probs=83.6
Q ss_pred CCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEeCCCCh
Q 024280 89 EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGI 168 (269)
Q Consensus 89 ~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~ 168 (269)
+++.+|||+| +..+|..||||||+|+|+..+........ ...+.+.+...++.++++||+||.+|.
T Consensus 2 ~~~~~ivDvR---------~~~e~~~~hi~ga~~i~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~iv~~c~~g~ 67 (100)
T smart00450 2 DEKVVLLDVR---------SPEEYEGGHIPGAVNIPLSELLDRRGELD-----ILEFEELLKRLGLDKDKPVVVYCRSGN 67 (100)
T ss_pred CCCEEEEECC---------CHHHhccCCCCCceeCCHHHhccCCCCcC-----HHHHHHHHHHcCCCCCCeEEEEeCCCc
Confidence 3568999999 68999999999999999987654322211 127888888999999999999998777
Q ss_pred HHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCc
Q 024280 169 FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (269)
Q Consensus 169 ~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~p 202 (269)
+ +.++++.|+.+|+++|++|+||+.+|...|.|
T Consensus 68 ~-a~~~~~~l~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 68 R-SAKAAWLLRELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred H-HHHHHHHHHHcCCCceEEecCCHHHHHhcCCC
Confidence 5 78999999999999999999999999998764
No 17
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.82 E-value=4.8e-20 Score=167.74 Aligned_cols=127 Identities=22% Similarity=0.262 Sum_probs=100.9
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCC--CCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHH
Q 024280 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQ--RNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~--~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~ 151 (269)
+..+++.+++...+++++.+|||+|..-.... ..+...+..||||||+|+|+.++.+. +.+.+.+++++.+.+
T Consensus 151 ~~~~~~~~~v~~~~~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~~~-----~~~~~~~~l~~~~~~ 225 (281)
T PRK11493 151 PEAVVRLTDVLLASHEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE-----GELKTTDELDAIFFG 225 (281)
T ss_pred ccceecHHHHHHhhcCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhcCC-----CCcCCHHHHHHHHHh
Confidence 45678888888777766789999993111100 00011234799999999999886531 357778999999999
Q ss_pred cCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh-CCCceecC
Q 024280 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA-SGYDVESS 206 (269)
Q Consensus 152 lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~-~G~pv~~~ 206 (269)
.|++++++||+||++|.+ |+.++++|+.+||+||++|+||+.+|.. .++|++++
T Consensus 226 ~g~~~~~~ii~yC~~G~~-A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 226 RGVSFDRPIIASCGSGVT-AAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred cCCCCCCCEEEECCcHHH-HHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 999999999999999886 8889999999999999999999999998 79999865
No 18
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.82 E-value=5.3e-20 Score=183.26 Aligned_cols=129 Identities=19% Similarity=0.288 Sum_probs=104.8
Q ss_pred CCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHc
Q 024280 73 PKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (269)
Q Consensus 73 ~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~l 152 (269)
....+++.+|+.+++++++++|||+|......... ...+..||||||+|+|+..+.+.. +.+++.+++++++.++
T Consensus 144 ~~~~~v~~e~v~~~l~~~~~~iIDaR~~~ef~G~~-~~~~r~GHIPGAvnip~~~~~~~~----~~lk~~~el~~~~~~~ 218 (610)
T PRK09629 144 HDEPTATREYLQSRLGAADLAIWDARAPTEYSGEK-VVAAKGGHIPGAVNFEWTAGMDKA----RNLRIRQDMPEILRDL 218 (610)
T ss_pred CCcccccHHHHHHhhCCCCcEEEECCCccccCCcc-cccccCCCCCCCeecCHHHhcCCC----CCCCCHHHHHHHHHHc
Confidence 34568999999999988888999999321111100 112357999999999997654432 4578899999999999
Q ss_pred CCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhC-CCceecCC
Q 024280 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS-GYDVESSA 207 (269)
Q Consensus 153 GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~-G~pv~~~~ 207 (269)
||+++++||+||++|.+ |+++||+|+.+||+||++|||||.+|... ++|+++..
T Consensus 219 Gi~~~~~VVvYC~sG~r-Aa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~ 273 (610)
T PRK09629 219 GITPDKEVITHCQTHHR-SGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPT 273 (610)
T ss_pred CCCCCCCEEEECCCChH-HHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence 99999999999999874 89999999999999999999999999984 78999754
No 19
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.82 E-value=6.3e-20 Score=141.27 Aligned_cols=102 Identities=20% Similarity=0.283 Sum_probs=80.5
Q ss_pred ccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhH-hhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCC
Q 024280 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-QVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (269)
Q Consensus 78 Is~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey-~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~ 156 (269)
|++++|.+++++++.+|||+| +..+| ..||||||+|+|+..+....... ..+...++++
T Consensus 1 is~~el~~~~~~~~~~iiDvR---------~~~~~~~~ghIpga~~ip~~~~~~~~~~~-----------~~~~~~~~~~ 60 (103)
T cd01447 1 LSPEDARALLGSPGVLLVDVR---------DPRELERTGMIPGAFHAPRGMLEFWADPD-----------SPYHKPAFAE 60 (103)
T ss_pred CCHHHHHHHHhCCCeEEEECC---------CHHHHHhcCCCCCcEEcccchhhhhcCcc-----------ccccccCCCC
Confidence 688999999877778999999 56777 67999999999976543110000 0111235789
Q ss_pred CCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCC
Q 024280 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (269)
Q Consensus 157 d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G 200 (269)
+++|||||.+|.+ +.+++++|+.+||+||++|+||+.+|..+|
T Consensus 61 ~~~ivv~c~~g~~-s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 61 DKPFVFYCASGWR-SALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCeEEEEcCCCCc-HHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 9999999998876 788999999999999999999999998764
No 20
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.82 E-value=9.3e-20 Score=140.06 Aligned_cols=97 Identities=22% Similarity=0.331 Sum_probs=83.1
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCC
Q 024280 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (269)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~ 156 (269)
.|++++|.++++++ .+|||+| +..+|..||||||+|+|+..+.... ..+++
T Consensus 3 ~i~~~el~~~~~~~-~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~~-------------------~~~~~ 53 (99)
T cd01527 3 TISPNDACELLAQG-AVLVDIR---------EPDEYLRERIPGARLVPLSQLESEG-------------------LPLVG 53 (99)
T ss_pred ccCHHHHHHHHHCC-CEEEECC---------CHHHHHhCcCCCCEECChhHhcccc-------------------cCCCC
Confidence 58999999988765 8999999 6899999999999999987653210 12477
Q ss_pred CCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCce
Q 024280 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (269)
Q Consensus 157 d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv 203 (269)
+++||+||++|.+ +..++..|+.+||++|++|+||+.+|+..|+|+
T Consensus 54 ~~~iv~~c~~g~~-s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 54 ANAIIFHCRSGMR-TQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCcEEEEeCCCch-HHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 8999999999886 777889999999999999999999999999875
No 21
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.81 E-value=1.2e-19 Score=142.06 Aligned_cols=102 Identities=23% Similarity=0.323 Sum_probs=87.6
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCC
Q 024280 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (269)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~ 155 (269)
..|++++|.+.+++.+.+|||+| +..+|..||||||+|+|+. .|.+++..+ +
T Consensus 5 ~~is~~el~~~l~~~~~~ivDvR---------~~~e~~~ghi~gA~~ip~~-----------------~l~~~~~~~--~ 56 (108)
T PRK00162 5 ECINVEQAHQKLQEGGAVLVDIR---------DPQSFAMGHAPGAFHLTND-----------------SLGAFMRQA--D 56 (108)
T ss_pred cccCHHHHHHHHHcCCCEEEEcC---------CHHHHhcCCCCCCeECCHH-----------------HHHHHHHhc--C
Confidence 46899999999876678999999 6899999999999999864 355566554 6
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecC
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~ 206 (269)
++.++||||..|.+ +..+...|+..||+||++|+||+.+|+..++|++..
T Consensus 57 ~~~~ivv~c~~g~~-s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 57 FDTPVMVMCYHGNS-SQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred CCCCEEEEeCCCCC-HHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 78899999998875 677778999999999999999999999999998764
No 22
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.81 E-value=1e-19 Score=141.33 Aligned_cols=107 Identities=30% Similarity=0.559 Sum_probs=83.4
Q ss_pred cHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcC--CCC
Q 024280 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG--LEN 156 (269)
Q Consensus 79 s~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lG--I~~ 156 (269)
||+||++++++++++|||+| +..+|..||||||+|+|+..+ .........+.+...+...+ +++
T Consensus 1 s~~el~~~l~~~~~~liD~R---------~~~~~~~~hI~ga~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (113)
T PF00581_consen 1 SPEELKEMLENESVLLIDVR---------SPEEYERGHIPGAVNIPFPSL-----DPDEPSLSEDKLDEFLKELGKKIDK 66 (113)
T ss_dssp -HHHHHHHHTTTTEEEEEES---------SHHHHHHSBETTEEEEEGGGG-----SSSSSBCHHHHHHHHHHHHTHGSTT
T ss_pred CHHHHHhhhhCCCeEEEEeC---------CHHHHHcCCCCCCcccccccc-----ccccccccccccccccccccccccc
Confidence 68999999977789999999 789999999999999999776 11233445566666555554 488
Q ss_pred CCcEEEeCCCChHH----HHHHHHHHHHcCCCcEEEccCcHHHHHhC
Q 024280 157 KDGLVVYDGKGIFS----AARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (269)
Q Consensus 157 d~~VVvY~~~g~~~----A~ra~~~L~~~G~~nV~vLdGG~~~W~~~ 199 (269)
++.||+||..|..+ +.+.+|+|+.+||++|++|+||+.+|.++
T Consensus 67 ~~~iv~yc~~~~~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 67 DKDIVFYCSSGWRSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp TSEEEEEESSSCHHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred cccceeeeecccccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 89999999665542 33345569999999999999999999863
No 23
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.81 E-value=9.9e-20 Score=143.11 Aligned_cols=100 Identities=23% Similarity=0.359 Sum_probs=83.5
Q ss_pred CcccHHHHHHhhCC--CCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcC
Q 024280 76 PVVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (269)
Q Consensus 76 ~lIs~~eL~~~l~~--~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lG 153 (269)
.-|++++|.+++.+ ++.+|||+| +..+|..||||||+|+|+..+.. +. ..+
T Consensus 8 ~~~s~~el~~~l~~~~~~~~iiDvR---------~~~e~~~ghIpgA~~ip~~~l~~----------------~~--~~~ 60 (110)
T cd01521 8 FETDCWDVAIALKNGKPDFVLVDVR---------SAEAYARGHVPGAINLPHREICE----------------NA--TAK 60 (110)
T ss_pred eecCHHHHHHHHHcCCCCEEEEECC---------CHHHHhcCCCCCCEeCCHHHhhh----------------Hh--hhc
Confidence 46899999999875 358999999 57899999999999999765421 01 135
Q ss_pred CCCCCcEEEeCCCCh-HHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCce
Q 024280 154 LENKDGLVVYDGKGI-FSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDV 203 (269)
Q Consensus 154 I~~d~~VVvY~~~g~-~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv 203 (269)
++++++|||||++|. ..+.++++.|+.+||+ |++|+||+.+|+.+|+|+
T Consensus 61 i~~~~~vvvyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 61 LDKEKLFVVYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred CCCCCeEEEEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 788999999999864 3589999999999995 999999999999999875
No 24
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.80 E-value=1.5e-19 Score=144.72 Aligned_cols=110 Identities=19% Similarity=0.228 Sum_probs=88.5
Q ss_pred CCCcccHHHHHHhhCC-CCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHc
Q 024280 74 KEPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~l 152 (269)
+...|++++|.+++++ .+.+|||+| +..+|..||||||+|+|+..+.+.... ++.. ++...
T Consensus 6 ~~~~is~~el~~~~~~~~~~~ivDvR---------~~~e~~~~hIpgai~ip~~~~~~~~~~----~~~~-----~~~~~ 67 (122)
T cd01526 6 PEERVSVKDYKNILQAGKKHVLLDVR---------PKVHFEICRLPEAINIPLSELLSKAAE----LKSL-----QELPL 67 (122)
T ss_pred cccccCHHHHHHHHhCCCCeEEEEcC---------CHHHhhcccCCCCeEccHHHHhhhhhh----hhhh-----hhccc
Confidence 4457999999998876 568899999 689999999999999998876432111 1111 34456
Q ss_pred CCCCCCcEEEeCCCChHHHHHHHHHHHHcCC-CcEEEccCcHHHHHhCCCc
Q 024280 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGH-DRVWVLDGGLPRWRASGYD 202 (269)
Q Consensus 153 GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~-~nV~vLdGG~~~W~~~G~p 202 (269)
+++++++||+||.+|.+ +..++.+|+.+|| ++|++|+||+.+|..+..+
T Consensus 68 ~~~~~~~ivv~C~~G~r-s~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 68 DNDKDSPIYVVCRRGND-SQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred ccCCCCcEEEECCCCCc-HHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 78999999999999876 7788889999999 7999999999999976543
No 25
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.1e-19 Score=162.08 Aligned_cols=124 Identities=23% Similarity=0.413 Sum_probs=108.9
Q ss_pred CCCCCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhh----------CCCCCCeeccccccccccCCCCCCC
Q 024280 70 SVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV----------AHIPGALFFDVDGVADRTTNLPHML 139 (269)
Q Consensus 70 ~~~~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~----------gHIPGAi~ip~~~l~~~~~~~~~~l 139 (269)
...+...+++.++++..++.+..+|||+| +.++|.. ||||||+|+|+..+.+. .+.+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~liDaR---------~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~~----~~~~ 216 (285)
T COG2897 150 AKYNVKAVVDATLVADALEVPAVLLIDAR---------SPERFRGKEPEPRDGKAGHIPGAINIPWTDLVDD----GGLF 216 (285)
T ss_pred ccCCccccCCHHHHHHHhcCCCeEEEecC---------CHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhcC----CCcc
Confidence 33456778999999999998889999999 5778877 99999999999987762 3578
Q ss_pred CCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhC-CCceecCC
Q 024280 140 PSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS-GYDVESSA 207 (269)
Q Consensus 140 p~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~-G~pv~~~~ 207 (269)
.+.++++.++...||+.+++||+||++|.+ |+-.|+.|+.+|+.++++|||++..|.+. +.|++++.
T Consensus 217 ~~~~~~~~l~~~~gi~~~~~vI~yCgsG~~-As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 217 KSPEEIARLYADAGIDPDKEVIVYCGSGVR-ASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred CcHHHHHHHHHhcCCCCCCCEEEEcCCchH-HHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 889999999999999999999999999986 88899999999999999999999999985 56888764
No 26
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.80 E-value=2.5e-19 Score=137.07 Aligned_cols=93 Identities=22% Similarity=0.272 Sum_probs=73.7
Q ss_pred ccHHHHHHhhCCC--CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCC
Q 024280 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (269)
Q Consensus 78 Is~~eL~~~l~~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~ 155 (269)
|++++|.+++++. +++|||+| +..+|..||||||+|+|+..+.. .+..+--.
T Consensus 1 is~~~l~~~~~~~~~~~~liDvR---------~~~e~~~ghipga~~ip~~~l~~-----------------~~~~~~~~ 54 (95)
T cd01534 1 IGAAELARWAAEGDRTVYRFDVR---------TPEEYEAGHLPGFRHTPGGQLVQ-----------------ETDHFAPV 54 (95)
T ss_pred CCHHHHHHHHHcCCCCeEEEECC---------CHHHHHhCCCCCcEeCCHHHHHH-----------------HHHHhccc
Confidence 6889999988654 57899999 68999999999999999765422 11111112
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
++++||+||.+|.+ +..+++.|+.+||+ |++|+||+.+|.+
T Consensus 55 ~~~~iv~~c~~G~r-s~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 55 RGARIVLADDDGVR-ADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CCCeEEEECCCCCh-HHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 46889999999987 55667778999999 9999999999973
No 27
>PLN02160 thiosulfate sulfurtransferase
Probab=99.80 E-value=8e-19 Score=143.68 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=90.1
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCC--eeccccccccccCCCCCCCCCHHHHHHHHHHcC
Q 024280 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGA--LFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (269)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGA--i~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lG 153 (269)
..|+++++.++++++ .+||||| ...+|..|||||| +|+|+..+. +. ..+.+.+...+ +.. .
T Consensus 15 ~~i~~~e~~~~~~~~-~~lIDVR---------~~~E~~~ghIpgA~~iniP~~~~~-~~----~~l~~~~~~~~-~~~-~ 77 (136)
T PLN02160 15 VSVDVSQAKTLLQSG-HQYLDVR---------TQDEFRRGHCEAAKIVNIPYMLNT-PQ----GRVKNQEFLEQ-VSS-L 77 (136)
T ss_pred eEeCHHHHHHHHhCC-CEEEECC---------CHHHHhcCCCCCcceecccchhcC-cc----cccCCHHHHHH-HHh-c
Confidence 468999999988654 6899999 6899999999999 899975432 11 12333332222 322 2
Q ss_pred CCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCC
Q 024280 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSA 207 (269)
Q Consensus 154 I~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~ 207 (269)
++++++||+||++|.+ |..++..|...||++|++|+||+.+|..+|+|+.+..
T Consensus 78 ~~~~~~IivyC~sG~R-S~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 130 (136)
T PLN02160 78 LNPADDILVGCQSGAR-SLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQEE 130 (136)
T ss_pred cCCCCcEEEECCCcHH-HHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccccc
Confidence 5788999999999986 7888899999999999999999999999999999865
No 28
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.79 E-value=4.5e-19 Score=136.97 Aligned_cols=94 Identities=22% Similarity=0.343 Sum_probs=77.2
Q ss_pred ccHHHHHHhhCCC--CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCC-
Q 024280 78 VSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL- 154 (269)
Q Consensus 78 Is~~eL~~~l~~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI- 154 (269)
|++++|.++++.+ +.+|||+| +..+|..+|||||+|+|+..+. +++..++.
T Consensus 2 i~~~~l~~~~~~~~~~~~iiDvR---------~~~e~~~~hI~ga~~ip~~~~~-----------------~~~~~~~~~ 55 (101)
T cd01528 2 ISVAELAEWLADEREEPVLIDVR---------EPEELEIAFLPGFLHLPMSEIP-----------------ERSKELDSD 55 (101)
T ss_pred CCHHHHHHHHhcCCCCCEEEECC---------CHHHHhcCcCCCCEecCHHHHH-----------------HHHHHhccc
Confidence 7899999998764 58999999 6899999999999999986542 22233322
Q ss_pred CCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 155 ~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
+++++||+||++|.+ |+++++.|..+||++|++|+||+.+|..
T Consensus 56 ~~~~~vv~~c~~g~r-s~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 56 NPDKDIVVLCHHGGR-SMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred CCCCeEEEEeCCCch-HHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 568999999999876 6777788888999999999999999975
No 29
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.78 E-value=8.3e-19 Score=134.28 Aligned_cols=94 Identities=26% Similarity=0.393 Sum_probs=73.3
Q ss_pred HHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCCCc
Q 024280 80 VDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 159 (269)
Q Consensus 80 ~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~ 159 (269)
++||.+. +++.+|||+| +..+|..||||||+|+|+..+. +..+.++. ++. ++++++
T Consensus 3 ~~~l~~~--~~~~~iiDvR---------~~~~~~~~hIpgA~~ip~~~~~----------~~~~~~~~-~~~--~~~~~~ 58 (96)
T cd01529 3 ADWLGEH--EPGTALLDVR---------AEDEYAAGHLPGKRSIPGAALV----------LRSQELQA-LEA--PGRATR 58 (96)
T ss_pred hHHHhcC--CCCeEEEeCC---------CHHHHcCCCCCCcEeCCHHHhc----------CCHHHHHH-hhc--CCCCCC
Confidence 4666653 4568999999 5789999999999999976542 22334443 332 478899
Q ss_pred EEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 160 VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
||+||.+|.+ +.++++.|+.+||+||++|+||+.+|.+
T Consensus 59 ivv~c~~g~~-s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 59 YVLTCDGSLL-ARFAAQELLALGGKPVALLDGGTSAWVA 96 (96)
T ss_pred EEEEeCChHH-HHHHHHHHHHcCCCCEEEeCCCHHHhcC
Confidence 9999998876 5666777899999999999999999963
No 30
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.77 E-value=9.2e-19 Score=140.46 Aligned_cols=98 Identities=17% Similarity=0.220 Sum_probs=78.1
Q ss_pred cccHHHHHHhhCCC------CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeecccc-ccccccCCCCCCCCCHHHHHHHH
Q 024280 77 VVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVD-GVADRTTNLPHMLPSEEAFAAAV 149 (269)
Q Consensus 77 lIs~~eL~~~l~~~------~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~-~l~~~~~~~~~~lp~~~~f~~~l 149 (269)
.|+++++.+++.++ +++||||| ...+|..||||||+|+|+. .+.. .+.+..
T Consensus 3 ~Is~~el~~~l~~~~~~~~~~~~liDvR---------~~~e~~~ghI~gA~~ip~~~~l~~-------------~~~~~~ 60 (121)
T cd01530 3 RISPETLARLLQGKYDNFFDKYIIIDCR---------FPYEYNGGHIKGAVNLSTKDELEE-------------FFLDKP 60 (121)
T ss_pred ccCHHHHHHHHhcccccCCCCEEEEECC---------CHHHHhCCcCCCCEeCCcHHHHHH-------------HHHHhh
Confidence 48999999998653 68999999 6789999999999999975 2221 111111
Q ss_pred HHcCCCCCCcEEEeCC-CChHHHHHHHHHHHHc------------CCCcEEEccCcHHHHH
Q 024280 150 SALGLENKDGLVVYDG-KGIFSAARVWWMFRVF------------GHDRVWVLDGGLPRWR 197 (269)
Q Consensus 150 ~~lGI~~d~~VVvY~~-~g~~~A~ra~~~L~~~------------G~~nV~vLdGG~~~W~ 197 (269)
..++++++++||+||. +|.+ ++++++.|+.+ ||++|++|+||+.+|.
T Consensus 61 ~~~~~~~~~~vv~yC~~sg~r-s~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 61 GVASKKKRRVLIFHCEFSSKR-GPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred cccccCCCCEEEEECCCcccc-HHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 2356889999999997 7765 78888899874 9999999999999984
No 31
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.77 E-value=1.8e-18 Score=131.66 Aligned_cols=91 Identities=32% Similarity=0.449 Sum_probs=78.2
Q ss_pred ccHHHHHHhhCC-CCcEEEEeccCCCCCCCCCHhhHhh--CCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCC
Q 024280 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQV--AHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (269)
Q Consensus 78 Is~~eL~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~~--gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI 154 (269)
|+++++.+++++ .+.+|||+| +..+|.. ||||||+|+|+..+ .+++.. +
T Consensus 2 i~~~~~~~~~~~~~~~~ivDvR---------~~~e~~~~~~hi~ga~~ip~~~~-----------------~~~~~~--~ 53 (96)
T cd01444 2 ISVDELAELLAAGEAPVLLDVR---------DPASYAALPDHIPGAIHLDEDSL-----------------DDWLGD--L 53 (96)
T ss_pred cCHHHHHHHHhcCCCcEEEECC---------CHHHHhcccCCCCCCeeCCHHHH-----------------HHHHhh--c
Confidence 688999998876 468999999 6789999 99999999997643 334433 5
Q ss_pred CCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 155 ~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
+++++|||||..|.+ +.++++.|+.+||+||++|+||+.+|.
T Consensus 54 ~~~~~ivv~c~~g~~-s~~a~~~l~~~G~~~v~~l~gG~~~w~ 95 (96)
T cd01444 54 DRDRPVVVYCYHGNS-SAQLAQALREAGFTDVRSLAGGFEAWR 95 (96)
T ss_pred CCCCCEEEEeCCCCh-HHHHHHHHHHcCCceEEEcCCCHHHhc
Confidence 789999999997775 889999999999999999999999996
No 32
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.77 E-value=2.2e-18 Score=130.55 Aligned_cols=89 Identities=22% Similarity=0.336 Sum_probs=75.1
Q ss_pred ccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCC
Q 024280 78 VSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENK 157 (269)
Q Consensus 78 Is~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d 157 (269)
+++++|.+++ .++.+|||+| +..+|..||||||+|+|+.+ |.+.++. ++++
T Consensus 1 ~~~~e~~~~~-~~~~~iiD~R---------~~~~~~~~hipgA~~ip~~~-----------------~~~~~~~--~~~~ 51 (90)
T cd01524 1 VQWHELDNYR-ADGVTLIDVR---------TPQEFEKGHIKGAINIPLDE-----------------LRDRLNE--LPKD 51 (90)
T ss_pred CCHHHHHHHh-cCCCEEEECC---------CHHHHhcCCCCCCEeCCHHH-----------------HHHHHHh--cCCC
Confidence 4789999988 4567899999 68999999999999999754 3334443 5778
Q ss_pred CcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 158 DGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 158 ~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
++||+||+.|.+ +..++..|+.+|+ +|++|+||+.+|+
T Consensus 52 ~~vvl~c~~g~~-a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 52 KEIIVYCAVGLR-GYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred CcEEEEcCCChh-HHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 999999998765 7888899999999 8999999999996
No 33
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.76 E-value=3.7e-18 Score=141.21 Aligned_cols=97 Identities=30% Similarity=0.390 Sum_probs=80.5
Q ss_pred HHHhhCC-CCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCCCcEE
Q 024280 83 LHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLV 161 (269)
Q Consensus 83 L~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~VV 161 (269)
|.+++.+ .+++|||+| +..+|..||||||+|++.. .|.+.+..+ .++++||
T Consensus 2 l~~~l~~~~~~~ivDvR---------~~~e~~~gHIpgAi~~~~~-----------------~l~~~l~~l--~~~~~vV 53 (145)
T cd01535 2 LAAWLGEGGQTAVVDVT---------ASANYVKRHIPGAWWVLRA-----------------QLAQALEKL--PAAERYV 53 (145)
T ss_pred hHHHHhCCCCeEEEECC---------CHHHHHcCCCCCceeCCHH-----------------HHHHHHHhc--CCCCCEE
Confidence 3444543 358999999 6899999999999999743 466667765 4578999
Q ss_pred EeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCC
Q 024280 162 VYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSAS 208 (269)
Q Consensus 162 vY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~ 208 (269)
|||.+|. .|..+++.|+.+||++|++|+||+.+|+.+|+|++++.+
T Consensus 54 v~c~~g~-~a~~aa~~L~~~G~~~v~~L~GG~~aW~~~g~pl~~~~~ 99 (145)
T cd01535 54 LTCGSSL-LARFAAADLAALTVKPVFVLEGGTAAWIAAGLPVESGET 99 (145)
T ss_pred EEeCCCh-HHHHHHHHHHHcCCcCeEEecCcHHHHHHCCCCcccCCC
Confidence 9999875 488899999999999999999999999999999998643
No 34
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.76 E-value=3.4e-18 Score=131.68 Aligned_cols=98 Identities=22% Similarity=0.141 Sum_probs=77.4
Q ss_pred ccHHHHHHhhCC-CCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCC
Q 024280 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLEN 156 (269)
Q Consensus 78 Is~~eL~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~ 156 (269)
|++++|.+++++ .+.+|||+| +..+|..||||||+|+|+..+.... + ....+.+.. +++
T Consensus 1 is~~el~~~l~~~~~~~liDvR---------~~~e~~~ghi~ga~~ip~~~~~~~~------~---~~~~~~~~~--~~~ 60 (100)
T cd01523 1 LDPEDLYARLLAGQPLFILDVR---------NESDYERWKIDGENNTPYFDPYFDF------L---EIEEDILDQ--LPD 60 (100)
T ss_pred CCHHHHHHHHHcCCCcEEEEeC---------CHHHHhhcccCCCcccccccchHHH------H---HhhHHHHhh--CCC
Confidence 688999998876 458999999 6899999999999999987642210 0 001223333 468
Q ss_pred CCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 157 KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 157 d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
+++|||||..|.+ +..++..|+.+||+ ++.|.||+.+|.
T Consensus 61 ~~~ivv~C~~G~r-s~~aa~~L~~~G~~-~~~l~GG~~~W~ 99 (100)
T cd01523 61 DQEVTVICAKEGS-SQFVAELLAERGYD-VDYLAGGMKAWS 99 (100)
T ss_pred CCeEEEEcCCCCc-HHHHHHHHHHcCce-eEEeCCcHHhhc
Confidence 8999999999886 77888899999999 999999999996
No 35
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.75 E-value=3.1e-18 Score=136.37 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=84.7
Q ss_pred ccHHHHHHhhCC-CCcEEEEeccCCCCCCCCCHhhHh-hCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCC
Q 024280 78 VSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQ-VAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (269)
Q Consensus 78 Is~~eL~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~-~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~ 155 (269)
||++++++++++ ++.+|||+| +..+|. .||||||+|+|+..+.. ..+. ..|...+..+. +
T Consensus 1 is~~el~~~l~~~~~~~vIDvR---------~~~e~~~~ghIpgA~~ip~~~~~~-------~~~~-~~~~~~l~~~~-~ 62 (117)
T cd01522 1 LTPAEAWALLQADPQAVLVDVR---------TEAEWKFVGGVPDAVHVAWQVYPD-------MEIN-PNFLAELEEKV-G 62 (117)
T ss_pred CCHHHHHHHHHhCCCeEEEECC---------CHHHHhcccCCCCceecchhhccc-------cccC-HHHHHHHHhhC-C
Confidence 689999999977 578999999 689999 99999999999887532 1122 24555555553 7
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhC
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~ 199 (269)
++++||+||.+|.+ |..+++.|+.+||+||+.|.||+.+|+..
T Consensus 63 ~~~~ivv~C~~G~r-s~~aa~~L~~~G~~~v~~l~gG~~~~~~~ 105 (117)
T cd01522 63 KDRPVLLLCRSGNR-SIAAAEAAAQAGFTNVYNVLEGFEGDLDA 105 (117)
T ss_pred CCCeEEEEcCCCcc-HHHHHHHHHHCCCCeEEECcCceecCCCC
Confidence 88999999998875 78889999999999999999999999874
No 36
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.75 E-value=6.4e-18 Score=157.93 Aligned_cols=157 Identities=18% Similarity=0.162 Sum_probs=107.2
Q ss_pred cHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccc---------cC-----CCCCCCCCHHH
Q 024280 79 SVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADR---------TT-----NLPHMLPSEEA 144 (269)
Q Consensus 79 s~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~---------~~-----~~~~~lp~~~~ 144 (269)
...++.+.+. ++.+||||| .+.||..||||||+|+|+.+.... .+ ...+.+++.+.
T Consensus 4 ~~~~~~~~~~-~~~~lIDVR---------sp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l 73 (345)
T PRK11784 4 DAQDFRALFL-NDTPLIDVR---------SPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNI 73 (345)
T ss_pred cHHHHHHHHh-CCCEEEECC---------CHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhH
Confidence 4566776653 468999999 689999999999999998643211 01 02234454322
Q ss_pred HHHHHHHcCC--CCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCCcchHHHhhhhHHHH
Q 024280 145 FAAAVSALGL--ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAI 222 (269)
Q Consensus 145 f~~~l~~lGI--~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~e~~ 222 (269)
.....+.++. +++++|||||..|+..|.+++|+|+.+|| +|++|+||+.+|+..+++.....+
T Consensus 74 ~~~~~~~~~~~~~~~~~ivvyC~rgG~RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~~~~~~-------------- 138 (345)
T PRK11784 74 AAHREEAWADFPRANPRGLLYCWRGGLRSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDTLEEAP-------------- 138 (345)
T ss_pred HHHHHHHHHhcccCCCeEEEEECCCChHHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHHHhhhc--------------
Confidence 2222222222 47889999996443458889999999999 599999999999998886554321
Q ss_pred HHhhcCCCCCcccccccCCccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024280 223 EKVYQGQVGPTTFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKAR 269 (269)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~iiDaRs~~r 269 (269)
.+..|. .+......+..+|+.++.+.+.++||.|+..+
T Consensus 139 --------~~~~~i-vl~G~TGsGKT~iL~~L~~~~~~vlDlE~~ae 176 (345)
T PRK11784 139 --------AQFPLV-VLGGNTGSGKTELLQALANAGAQVLDLEGLAN 176 (345)
T ss_pred --------ccCceE-ecCCCCcccHHHHHHHHHhcCCeEEECCchhh
Confidence 111221 12323457789999999888899999998753
No 37
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.74 E-value=1.1e-17 Score=158.30 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=90.7
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCC
Q 024280 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (269)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~ 155 (269)
..|++++|.+++++ +.+|||+| +..+|..||||||+|+|+.. +.+.+..++++
T Consensus 3 ~~is~~el~~~l~~-~~~ivDvR---------~~~e~~~ghIpgAi~ip~~~-----------------l~~~~~~~~~~ 55 (376)
T PRK08762 3 REISPAEARARAAQ-GAVLIDVR---------EAHERASGQAEGALRIPRGF-----------------LELRIETHLPD 55 (376)
T ss_pred ceeCHHHHHHHHhC-CCEEEECC---------CHHHHhCCcCCCCEECCHHH-----------------HHHHHhhhcCC
Confidence 35899999999865 48999999 68999999999999999754 34455555668
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCC
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSAS 208 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~ 208 (269)
++++||+||++|.+ +.++++.|+.+||+||++|+||+.+|+..|+|++....
T Consensus 56 ~~~~IvvyC~~G~r-s~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~~ 107 (376)
T PRK08762 56 RDREIVLICASGTR-SAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPRL 107 (376)
T ss_pred CCCeEEEEcCCCcH-HHHHHHHHHHcCCCceEeecCcHHHHHhcCCccccccC
Confidence 89999999998876 77899999999999999999999999999999997654
No 38
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.74 E-value=1.1e-17 Score=127.50 Aligned_cols=87 Identities=23% Similarity=0.290 Sum_probs=69.2
Q ss_pred hhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEeCC
Q 024280 86 NLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (269)
Q Consensus 86 ~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~VVvY~~ 165 (269)
++++++++|||+| +..+|..||||||+|+|+..+... ....+ .+++++|||||.
T Consensus 5 ~~~~~~~~liDvR---------~~~e~~~~hi~ga~~ip~~~~~~~----------------~~~~~-~~~~~~ivl~c~ 58 (92)
T cd01532 5 LLAREEIALIDVR---------EEDPFAQSHPLWAANLPLSRLELD----------------AWVRI-PRRDTPIVVYGE 58 (92)
T ss_pred hhcCCCeEEEECC---------CHHHHhhCCcccCeeCCHHHHHhh----------------hHhhC-CCCCCeEEEEeC
Confidence 4455678999999 689999999999999997754211 00111 135889999999
Q ss_pred CChHH-HHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 166 KGIFS-AARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 166 ~g~~~-A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
+|.++ +.+++++|+..||++|++|+||+.+|.+
T Consensus 59 ~G~~~~s~~aa~~L~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 59 GGGEDLAPRAARRLSELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred CCCchHHHHHHHHHHHcCccCEEEccCCHHHHcC
Confidence 98653 7899999999999999999999999973
No 39
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.74 E-value=2.2e-17 Score=152.34 Aligned_cols=143 Identities=16% Similarity=0.184 Sum_probs=97.6
Q ss_pred CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeecccccccccc---------CCC-----CCCCC---CHHHHHHHHHHcC
Q 024280 91 DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRT---------TNL-----PHMLP---SEEAFAAAVSALG 153 (269)
Q Consensus 91 ~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~---------~~~-----~~~lp---~~~~f~~~l~~lG 153 (269)
+..||||| .+.||..||||||+|+|+.+..... +.. ...+. -.+.+.+++...
T Consensus 2 ~~~liDVR---------sp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~- 71 (311)
T TIGR03167 2 FDPLIDVR---------SPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFA- 71 (311)
T ss_pred CCEEEECC---------CHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhc-
Confidence 35899999 6899999999999999985422110 000 00000 011233333332
Q ss_pred CCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCCcchHHHhhhhHHHHHHhhcCCCCCc
Q 024280 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGDAILKASAASEAIEKVYQGQVGPT 233 (269)
Q Consensus 154 I~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ 233 (269)
+++..|||||..++..|.+++|.|+.+|| +|++|+||+.+|+..+.+.....+. +.
T Consensus 72 -~~~~~vvvyC~~gG~RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~~~~~~----------------------~~ 127 (311)
T TIGR03167 72 -DGPPQPLLYCWRGGMRSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQLEELPQ----------------------PF 127 (311)
T ss_pred -CCCCcEEEEECCCChHHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhhhccCC----------------------CC
Confidence 34456999996443458899999999999 6999999999999999876664321 11
Q ss_pred ccccccCCccccCHHHHHHHhhCCCcEEEccCCCC
Q 024280 234 TFQTKFQPHLIWTLEQVKRNIEEGTYQLVDARSKA 268 (269)
Q Consensus 234 ~~~~~~~~~~~~~~~~v~~~l~~~~~~iiDaRs~~ 268 (269)
.+.. +.....++..+|++.+++.+.++||.|+..
T Consensus 128 ~~~v-l~g~tg~gKt~Ll~~L~~~~~~VvDlr~~a 161 (311)
T TIGR03167 128 PLIV-LGGMTGSGKTELLHALANAGAQVLDLEGLA 161 (311)
T ss_pred ceec-cCCCCCcCHHHHHHHHhcCCCeEEECCchH
Confidence 1211 333456889999999988889999999864
No 40
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.74 E-value=8.5e-18 Score=132.61 Aligned_cols=99 Identities=22% Similarity=0.341 Sum_probs=75.4
Q ss_pred CcccHHHHHHhhCC--CCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcC
Q 024280 76 PVVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALG 153 (269)
Q Consensus 76 ~lIs~~eL~~~l~~--~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lG 153 (269)
..|++++|++++.. ++++|||+| +. +|..||||||+|+|+..+.. .+.++.+.+|
T Consensus 2 ~~is~~~l~~~~~~~~~~~~iiDvR---------~~-e~~~~hi~gA~~ip~~~l~~-------------~~~~~~~~~~ 58 (113)
T cd01531 2 SYISPAQLKGWIRNGRPPFQVVDVR---------DE-DYAGGHIKGSWHYPSTRFKA-------------QLNQLVQLLS 58 (113)
T ss_pred CcCCHHHHHHHHHcCCCCEEEEEcC---------Cc-ccCCCcCCCCEecCHHHHhh-------------CHHHHHHHHh
Confidence 36899999998865 457899999 56 99999999999999886532 2445555566
Q ss_pred CCCCCcEEEeCC-CChHHHHHHH-HHHHH-------cCCCcEEEccCcHHHHHh
Q 024280 154 LENKDGLVVYDG-KGIFSAARVW-WMFRV-------FGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 154 I~~d~~VVvY~~-~g~~~A~ra~-~~L~~-------~G~~nV~vLdGG~~~W~~ 198 (269)
++++++||+||. ++.+ +..+. ++++. .||.||++|+||+.+|.+
T Consensus 59 ~~~~~~iv~yC~~~~~r-~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~ 111 (113)
T cd01531 59 GSKKDTVVFHCALSQVR-GPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWES 111 (113)
T ss_pred cCCCCeEEEEeecCCcc-hHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHh
Confidence 788899999998 4443 33332 22232 499999999999999986
No 41
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.73 E-value=1.7e-17 Score=132.62 Aligned_cols=113 Identities=19% Similarity=0.235 Sum_probs=96.2
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCC
Q 024280 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (269)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~ 155 (269)
..++.++++++++.++.++|||| .++||..||||.+||||+.... ..+++. .++|.+.++...-.
T Consensus 23 ~sv~~~qvk~L~~~~~~~llDVR---------epeEfk~gh~~~siNiPy~~~~-----~~~~l~-~~eF~kqvg~~kp~ 87 (136)
T KOG1530|consen 23 QSVSVEQVKNLLQHPDVVLLDVR---------EPEEFKQGHIPASINIPYMSRP-----GAGALK-NPEFLKQVGSSKPP 87 (136)
T ss_pred EEEEHHHHHHHhcCCCEEEEeec---------CHHHhhccCCcceEeccccccc-----cccccC-CHHHHHHhcccCCC
Confidence 46899999999998889999999 6899999999999999986422 123343 55788888887777
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCcee
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVE 204 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~ 204 (269)
.|+.|||||.+|.+ +-.|.-.|..+||+||.++.|||.+|.+.++|..
T Consensus 88 ~d~eiIf~C~SG~R-s~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 88 HDKEIIFGCASGVR-SLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CCCcEEEEeccCcc-hhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 88899999999997 6777788999999999999999999999988753
No 42
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.73 E-value=6e-18 Score=136.99 Aligned_cols=109 Identities=27% Similarity=0.388 Sum_probs=82.7
Q ss_pred cccHHHHHHhhCC--CCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccC---C--CCCCCCCHHHHHHHH
Q 024280 77 VVSVDWLHANLRE--PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTT---N--LPHMLPSEEAFAAAV 149 (269)
Q Consensus 77 lIs~~eL~~~l~~--~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~---~--~~~~lp~~~~f~~~l 149 (269)
+|+++||.++++. ++++|||+| +..+|..||||||+|+|+..+..... . ...+++..+.++.+.
T Consensus 1 ~is~~~l~~~l~~~~~~~~iiDvR---------~~~~~~~~hI~~ai~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 71 (132)
T cd01446 1 TIDCAWLAALLREGGERLLLLDCR---------PFLEYSSSHIRGAVNVCCPTILRRRLQGGKILLQQLLSCPEDRDRLR 71 (132)
T ss_pred CcCHHHHHHHHhcCCCCEEEEECC---------CHHHHhhCcccCcEecChHHHHHHhhcccchhhhhhcCCHHHHHHHh
Confidence 5899999999975 468999999 68899999999999999886432111 0 112455555554433
Q ss_pred HHcCCCCCCcEEEeCCCCh-----HHHHHHHHHHHHcCC-----CcEEEccCcHHHHHh
Q 024280 150 SALGLENKDGLVVYDGKGI-----FSAARVWWMFRVFGH-----DRVWVLDGGLPRWRA 198 (269)
Q Consensus 150 ~~lGI~~d~~VVvY~~~g~-----~~A~ra~~~L~~~G~-----~nV~vLdGG~~~W~~ 198 (269)
. . ++++|||||+.+. ..+++++|+++.+|+ .+|++|+||+.+|.+
T Consensus 72 ~-~---~~~~VVvYd~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~ 126 (132)
T cd01446 72 R-G---ESLAVVVYDESSSDRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSS 126 (132)
T ss_pred c-C---CCCeEEEEeCCCcchhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHh
Confidence 3 2 6789999998765 346778888888777 789999999999976
No 43
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.72 E-value=1.3e-17 Score=124.05 Aligned_cols=88 Identities=32% Similarity=0.548 Sum_probs=73.1
Q ss_pred HHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCCCcEEE
Q 024280 83 LHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVV 162 (269)
Q Consensus 83 L~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~VVv 162 (269)
+.+++..++..|||+| +..+|..||||||+|+|+..+... ....+++++++|||
T Consensus 2 ~~~~~~~~~~~iiD~R---------~~~~~~~~~i~ga~~~~~~~~~~~-----------------~~~~~~~~~~~vv~ 55 (89)
T cd00158 2 LKELLDDEDAVLLDVR---------EPEEYAAGHIPGAINIPLSELEER-----------------AALLELDKDKPIVV 55 (89)
T ss_pred hHHHhcCCCeEEEECC---------CHHHHhccccCCCEecchHHHhhH-----------------HHhhccCCCCeEEE
Confidence 4455556679999999 678999999999999998764221 03456789999999
Q ss_pred eCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 163 YDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 163 Y~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
||..+.+ +.++++.|+.+||++|++|+||+.+|+
T Consensus 56 ~c~~~~~-a~~~~~~l~~~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 56 YCRSGNR-SARAAKLLRKAGGTNVYNLEGGMLAWK 89 (89)
T ss_pred EeCCCch-HHHHHHHHHHhCcccEEEecCChhhcC
Confidence 9998764 889999999999999999999999994
No 44
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.71 E-value=3e-17 Score=129.55 Aligned_cols=97 Identities=22% Similarity=0.388 Sum_probs=71.8
Q ss_pred cccHHHHHHhhCCC------CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHH
Q 024280 77 VVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS 150 (269)
Q Consensus 77 lIs~~eL~~~l~~~------~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~ 150 (269)
.|++++|+++++++ +++||||| +. +|..||||||+|+|+..+.. .+.+.+.
T Consensus 3 ~is~~el~~~l~~~~~~~~~~~~iiDvR---------~~-ef~~ghipgAi~ip~~~~~~-------------~~~~~~~ 59 (113)
T cd01443 3 YISPEELVALLENSDSNAGKDFVVVDLR---------RD-DYEGGHIKGSINLPAQSCYQ-------------TLPQVYA 59 (113)
T ss_pred ccCHHHHHHHHhCCccccCCcEEEEECC---------ch-hcCCCcccCceecchhHHHH-------------HHHHHHH
Confidence 58999999999764 58999999 56 99999999999999876532 2233344
Q ss_pred HcCCCCCCcEEEeCCCC-hHHHHHHH-HHHH---HcCC--CcEEEccCcHHHHH
Q 024280 151 ALGLENKDGLVVYDGKG-IFSAARVW-WMFR---VFGH--DRVWVLDGGLPRWR 197 (269)
Q Consensus 151 ~lGI~~d~~VVvY~~~g-~~~A~ra~-~~L~---~~G~--~nV~vLdGG~~~W~ 197 (269)
.+...+.++||+||.++ .+ +.+++ |+++ ..|+ .++++|+||+.+|.
T Consensus 60 ~~~~~~~~~iv~~C~~~g~r-s~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 60 LFSLAGVKLAIFYCGSSQGR-GPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred HhhhcCCCEEEEECCCCCcc-cHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 33335567899999974 44 55544 4433 3464 78999999999996
No 45
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.68 E-value=2.3e-16 Score=145.87 Aligned_cols=102 Identities=21% Similarity=0.322 Sum_probs=84.2
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHH-HHc
Q 024280 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV-SAL 152 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l-~~l 152 (269)
....|+++++.+++++++++|||+| ...||..||||||+|+|+..+.+ |..++ +.+
T Consensus 110 ~~~~is~~el~~~l~~~~~vlIDVR---------~~~E~~~GhI~GAi~ip~~~~~~--------------~~~~l~~~~ 166 (314)
T PRK00142 110 VGTYLKPKEVNELLDDPDVVFIDMR---------NDYEYEIGHFENAIEPDIETFRE--------------FPPWVEENL 166 (314)
T ss_pred CCcccCHHHHHHHhcCCCeEEEECC---------CHHHHhcCcCCCCEeCCHHHhhh--------------hHHHHHHhc
Confidence 3467999999999988889999999 57999999999999999876532 12222 345
Q ss_pred CCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhC
Q 024280 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (269)
Q Consensus 153 GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~ 199 (269)
++.++++||+||.+|.+ +..+...|+..||++|+.|+||+.+|...
T Consensus 167 ~~~kdk~IvvyC~~G~R-s~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 167 DPLKDKKVVMYCTGGIR-CEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred CCCCcCeEEEECCCCcH-HHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 67789999999999997 45566777889999999999999999873
No 46
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.65 E-value=6e-16 Score=120.56 Aligned_cols=81 Identities=16% Similarity=0.185 Sum_probs=68.9
Q ss_pred CCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEeCCCChH
Q 024280 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIF 169 (269)
Q Consensus 90 ~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~ 169 (269)
....+||+| +.++|..||||||+|+|+.+ +.+.+..++.+++++|||||.+|.+
T Consensus 17 ~~~~lIDvR---------~~~ef~~ghIpgAinip~~~-----------------l~~~l~~~~~~~~~~vvlyC~~G~r 70 (101)
T TIGR02981 17 AAEHWIDVR---------IPEQYQQEHIQGAINIPLKE-----------------IKEHIATAVPDKNDTVKLYCNAGRQ 70 (101)
T ss_pred cCCEEEECC---------CHHHHhcCCCCCCEECCHHH-----------------HHHHHHHhCCCCCCeEEEEeCCCHH
Confidence 356899999 68999999999999999754 4445666666788899999999886
Q ss_pred HHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 170 SAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 170 ~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
|..++..|+.+||++|+++ ||+.+|..
T Consensus 71 -S~~aa~~L~~~G~~~v~~~-GG~~~~~~ 97 (101)
T TIGR02981 71 -SGMAKDILLDMGYTHAENA-GGIKDIAM 97 (101)
T ss_pred -HHHHHHHHHHcCCCeEEec-CCHHHhhh
Confidence 7888899999999999986 99999985
No 47
>PRK01415 hypothetical protein; Validated
Probab=99.65 E-value=5.2e-16 Score=138.61 Aligned_cols=103 Identities=18% Similarity=0.219 Sum_probs=84.8
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHH-Hc
Q 024280 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVS-AL 152 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~-~l 152 (269)
....|+++++.+++++++++||||| ...||..||||||+|+|+..+.. |.+++. ..
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVR---------n~~E~~~Ghi~gAinip~~~f~e--------------~~~~~~~~~ 166 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTR---------NDYEVEVGTFKSAINPNTKTFKQ--------------FPAWVQQNQ 166 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECC---------CHHHHhcCCcCCCCCCChHHHhh--------------hHHHHhhhh
Confidence 3467999999999988889999999 58999999999999999876532 222221 12
Q ss_pred CCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCC
Q 024280 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASG 200 (269)
Q Consensus 153 GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G 200 (269)
.++++++||+||.+|.+ +..+...|+..||++|+.|.||+.+|....
T Consensus 167 ~~~k~k~Iv~yCtgGiR-s~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 167 ELLKGKKIAMVCTGGIR-CEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred hhcCCCeEEEECCCChH-HHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 35788999999999987 677788899999999999999999999743
No 48
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.65 E-value=8.1e-16 Score=120.44 Aligned_cols=82 Identities=16% Similarity=0.201 Sum_probs=70.8
Q ss_pred CCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEeCCCCh
Q 024280 89 EPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGI 168 (269)
Q Consensus 89 ~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~ 168 (269)
..+-+|||+| +..+|..||||||+|+|+.+ +.+.++.++.+++++||+||.+|.
T Consensus 18 ~~~~~lIDvR---------~~~ef~~ghIpGAiniP~~~-----------------l~~~l~~l~~~~~~~IVlyC~~G~ 71 (104)
T PRK10287 18 FAAEHWIDVR---------VPEQYQQEHVQGAINIPLKE-----------------VKERIATAVPDKNDTVKLYCNAGR 71 (104)
T ss_pred cCCCEEEECC---------CHHHHhcCCCCccEECCHHH-----------------HHHHHHhcCCCCCCeEEEEeCCCh
Confidence 3456899999 68999999999999999753 556777788888899999999887
Q ss_pred HHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 169 FSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 169 ~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
+ |..+++.|..+||++|++ .||+.+|..
T Consensus 72 r-S~~aa~~L~~~G~~~v~~-~GG~~~~~~ 99 (104)
T PRK10287 72 Q-SGQAKEILSEMGYTHAEN-AGGLKDIAM 99 (104)
T ss_pred H-HHHHHHHHHHcCCCeEEe-cCCHHHHhh
Confidence 5 788899999999999987 699999975
No 49
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.63 E-value=1.3e-15 Score=118.15 Aligned_cols=99 Identities=28% Similarity=0.462 Sum_probs=79.6
Q ss_pred HHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCC-CeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCCCc
Q 024280 81 DWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPG-ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDG 159 (269)
Q Consensus 81 ~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPG-Ai~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~ 159 (269)
.........++.+|||+| ...+|..+|||| ++|+|+.++........ .+++++
T Consensus 10 ~~~~~~~~~~~~~liDvR---------~~~e~~~~~i~~~~~~ip~~~~~~~~~~~~-----------------~~~~~~ 63 (110)
T COG0607 10 DEAALLLAGEDAVLLDVR---------EPEEYERGHIPGAAINIPLSELKAAENLLE-----------------LPDDDP 63 (110)
T ss_pred HHHHHhhccCCCEEEecc---------ChhHhhhcCCCcceeeeecccchhhhcccc-----------------cCCCCe
Confidence 333344445679999999 569999999999 99999987644211100 468999
Q ss_pred EEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecC
Q 024280 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESS 206 (269)
Q Consensus 160 VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~ 206 (269)
+||||..|.+ +..+...|+..||++++.|+||+.+|...++|++..
T Consensus 64 ivv~C~~G~r-S~~aa~~L~~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 64 IVVYCASGVR-SAAAAAALKLAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred EEEEeCCCCC-hHHHHHHHHHcCCccccccCCcHHHHHhcCCCcccC
Confidence 9999999997 677889999999999999999999999999987653
No 50
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.60 E-value=3.5e-15 Score=134.43 Aligned_cols=100 Identities=24% Similarity=0.335 Sum_probs=79.8
Q ss_pred CCcccHHHHHHhhCC------CCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHH
Q 024280 75 EPVVSVDWLHANLRE------PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAA 148 (269)
Q Consensus 75 ~~lIs~~eL~~~l~~------~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~ 148 (269)
...|+++++.+++++ ++.+||||| ...||+.||||||+|+|+..+.. +..+
T Consensus 109 ~~~is~~el~~~l~~~~~~~~~~~vlIDVR---------~~~E~~~Ghi~GAiniPl~~f~~--------------~~~~ 165 (257)
T PRK05320 109 APSVDAATLKRWLDQGHDDAGRPVVMLDTR---------NAFEVDVGTFDGALDYRIDKFTE--------------FPEA 165 (257)
T ss_pred CceeCHHHHHHHHhccccccCCCeEEEECC---------CHHHHccCccCCCEeCChhHhhh--------------hHHH
Confidence 356999999988765 247999999 68999999999999999876532 2222
Q ss_pred HHHc-CCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 149 VSAL-GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 149 l~~l-GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
+... ...++++||+||.+|.+ +..+...|+..||+||+.|.||+.+|..
T Consensus 166 l~~~~~~~kdk~IvvyC~~G~R-s~~Aa~~L~~~Gf~~V~~L~GGi~~w~~ 215 (257)
T PRK05320 166 LAAHRADLAGKTVVSFCTGGIR-CEKAAIHMQEVGIDNVYQLEGGILKYFE 215 (257)
T ss_pred HHhhhhhcCCCeEEEECCCCHH-HHHHHHHHHHcCCcceEEeccCHHHHHH
Confidence 2221 11268899999999987 7778888999999999999999999986
No 51
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.60 E-value=4.2e-15 Score=141.43 Aligned_cols=101 Identities=20% Similarity=0.324 Sum_probs=83.9
Q ss_pred CCCcccHHHHHHhhCCC-CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHc
Q 024280 74 KEPVVSVDWLHANLREP-DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~~-~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~l 152 (269)
....|++++|+++++++ +++|||+| +..+|..||||||+|+|+..+... ..+.
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR---------~~~ef~~ghIpGAinip~~~l~~~---------------~~~~-- 338 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVR---------EPVEWDIVHIPGAQLIPKSEILSG---------------EALA-- 338 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECC---------CHHHHhcCCCCCCEEcChHHhcch---------------hHHh--
Confidence 34679999999998754 57899999 689999999999999998765321 0111
Q ss_pred CCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCC
Q 024280 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGY 201 (269)
Q Consensus 153 GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~ 201 (269)
.++++++||+||++|.+ |.++++.|+..||++|++|+||+.+|....-
T Consensus 339 ~l~~d~~iVvyC~~G~r-S~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~ 386 (392)
T PRK07878 339 KLPQDRTIVLYCKTGVR-SAEALAALKKAGFSDAVHLQGGVVAWAKQVD 386 (392)
T ss_pred hCCCCCcEEEEcCCChH-HHHHHHHHHHcCCCcEEEecCcHHHHHHhcC
Confidence 25789999999999886 7889999999999999999999999997653
No 52
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.55 E-value=1.7e-14 Score=135.66 Aligned_cols=95 Identities=22% Similarity=0.346 Sum_probs=78.1
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCC
Q 024280 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (269)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI 154 (269)
...++++++.+.. .+.+|||+| +.++|..||||||+|+|+.++.... ...++
T Consensus 260 ~~~i~~~~~~~~~--~~~~IIDVR---------~~~ef~~ghIpgAinip~~~l~~~~-----------------~~~~~ 311 (355)
T PRK05597 260 GEVLDVPRVSALP--DGVTLIDVR---------EPSEFAAYSIPGAHNVPLSAIREGA-----------------NPPSV 311 (355)
T ss_pred ccccCHHHHHhcc--CCCEEEECC---------CHHHHccCcCCCCEEeCHHHhhhcc-----------------ccccC
Confidence 3478899998654 357899999 6899999999999999987653211 11235
Q ss_pred CCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 155 ~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
+++++||+||..|.+ +.++++.|+.+||+||++|+||+.+|.+
T Consensus 312 ~~~~~IvvyC~~G~r-S~~Aa~~L~~~G~~nV~~L~GGi~~W~~ 354 (355)
T PRK05597 312 SAGDEVVVYCAAGVR-SAQAVAILERAGYTGMSSLDGGIEGWLD 354 (355)
T ss_pred CCCCeEEEEcCCCHH-HHHHHHHHHHcCCCCEEEecCcHHHHhh
Confidence 788999999999875 8899999999999999999999999975
No 53
>PRK07411 hypothetical protein; Validated
Probab=99.52 E-value=4.4e-14 Score=134.37 Aligned_cols=103 Identities=22% Similarity=0.330 Sum_probs=81.6
Q ss_pred CCcccHHHHHHhhCCC--CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHc
Q 024280 75 EPVVSVDWLHANLREP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (269)
Q Consensus 75 ~~lIs~~eL~~~l~~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~l 152 (269)
...|++++|.++++.+ +.+|||+| +..+|..||||||+|+|+.++.... ..+.+.+
T Consensus 281 ~~~Is~~el~~~l~~~~~~~vlIDVR---------~~~E~~~ghIpGAiniP~~~l~~~~--------~~~~l~~----- 338 (390)
T PRK07411 281 IPEMTVTELKALLDSGADDFVLIDVR---------NPNEYEIARIPGSVLVPLPDIENGP--------GVEKVKE----- 338 (390)
T ss_pred cCccCHHHHHHHHhCCCCCeEEEECC---------CHHHhccCcCCCCEEccHHHhhccc--------chHHHhh-----
Confidence 3569999999988654 47899999 6899999999999999988764311 0122222
Q ss_pred CCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCc
Q 024280 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYD 202 (269)
Q Consensus 153 GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~p 202 (269)
+.++++||+||.+|.+ |.++++.|+.+||++ +.|+||+.+|.++..|
T Consensus 339 -l~~d~~IVvyC~~G~R-S~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p 385 (390)
T PRK07411 339 -LLNGHRLIAHCKMGGR-SAKALGILKEAGIEG-TNVKGGITAWSREVDP 385 (390)
T ss_pred -cCCCCeEEEECCCCHH-HHHHHHHHHHcCCCe-EEecchHHHHHHhcCC
Confidence 3578899999999886 788999999999985 5799999999986544
No 54
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.31 E-value=3.8e-12 Score=120.34 Aligned_cols=93 Identities=22% Similarity=0.332 Sum_probs=73.6
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCC---CCeeccccccccccCCCCCCCCCHHHHHHHHHHc-
Q 024280 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIP---GALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL- 152 (269)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIP---GAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~l- 152 (269)
.++++++.+++++++.+||||| ++.||+.|||| ||+|||+..+.... .+ ++.+
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR---------~~~E~~~ghI~~~~gAinIPl~~l~~~~-----------~~---~~~l~ 328 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVR---------EPHEVLLKDLPEGGASLKLPLSAITDDA-----------DI---LHALS 328 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECC---------CHHHhhhccCCCCCccEeCcHHHhhcch-----------hh---hhhcc
Confidence 5899999999887778999999 68999999998 59999988764211 01 1122
Q ss_pred CCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCc-EEEccCcHH
Q 024280 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR-VWVLDGGLP 194 (269)
Q Consensus 153 GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~n-V~vLdGG~~ 194 (269)
.++++ +|||||.+|.+ +..+...|+..||++ |+.|.||+.
T Consensus 329 ~~~~~-~Ivv~C~sG~R-S~~Aa~~L~~~G~~~~v~~l~GG~~ 369 (370)
T PRK05600 329 PIDGD-NVVVYCASGIR-SADFIEKYSHLGHELTLHNLPGGVN 369 (370)
T ss_pred ccCCC-cEEEECCCChh-HHHHHHHHHHcCCCCceEEeccccC
Confidence 23444 89999999987 677888899999996 999999974
No 55
>KOG1529 consensus Mercaptopyruvate sulfurtransferase/thiosulfate sulfurtransferase [Defense mechanisms]
Probab=99.22 E-value=3.7e-11 Score=108.12 Aligned_cols=118 Identities=23% Similarity=0.327 Sum_probs=93.1
Q ss_pred CCcccHHHHHHh-hCCCCcEEEEeccC--CCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHH
Q 024280 75 EPVVSVDWLHAN-LREPDLKVLDASWY--MPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSA 151 (269)
Q Consensus 75 ~~lIs~~eL~~~-l~~~~~vIIDvR~~--~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~ 151 (269)
..+++-+++... ++..+..+||+|.. .....+++...+..||||||+|||+..+.+++. .+.+++++..++..
T Consensus 155 ~il~~~edi~~n~~~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~~~~g----~~k~~edl~~~f~~ 230 (286)
T KOG1529|consen 155 SILATLEDIPFNNLATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVLDPDG----FIKPAEDLKHLFAQ 230 (286)
T ss_pred HHHHHHhhccccccccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhccccc----ccCCHHHHHHHHHh
Confidence 344455554443 45567999999954 223333346778889999999999999777653 34448999999999
Q ss_pred cCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 152 LGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 152 lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
.|+..++++|+-|+.|.. |+-.+..|...| .+|+++||++..|..
T Consensus 231 ~~l~~~~p~~~sC~~Gis-a~~i~~al~r~g-~~~~lYdGS~~Ew~~ 275 (286)
T KOG1529|consen 231 KGLKLSKPVIVSCGTGIS-ASIIALALERSG-PDAKLYDGSWTEWAL 275 (286)
T ss_pred cCcccCCCEEEeeccchh-HHHHHHHHHhcC-CCcceecccHHHHhh
Confidence 999999999999999985 888888999999 889999999999985
No 56
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.05 E-value=2.6e-10 Score=103.19 Aligned_cols=101 Identities=21% Similarity=0.340 Sum_probs=78.5
Q ss_pred CCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCC
Q 024280 75 EPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGL 154 (269)
Q Consensus 75 ~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI 154 (269)
...|+|++..+++.+++++|||+| ...||+.||-.||++.+...|.. + ++.+++.+..
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtR---------N~YE~~iG~F~gAv~p~~~tFre--------f--P~~v~~~~~~--- 169 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTR---------NDYEVAIGHFEGAVEPDIETFRE--------F--PAWVEENLDL--- 169 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcC---------cceeEeeeeecCccCCChhhhhh--------h--HHHHHHHHHh---
Confidence 467999999999999999999999 46899999999999998776542 1 1233333333
Q ss_pred CCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 155 ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 155 ~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
-++++||.||.+|++---...| |+..||++|+-|+||+-.+..
T Consensus 170 ~~~KkVvmyCTGGIRCEKas~~-m~~~GF~eVyhL~GGIl~Y~e 212 (308)
T COG1054 170 LKDKKVVMYCTGGIRCEKASAW-MKENGFKEVYHLEGGILKYLE 212 (308)
T ss_pred ccCCcEEEEcCCceeehhhHHH-HHHhcchhhhcccchHHHHhh
Confidence 3567999999999984444445 455799999999999987765
No 57
>KOG3772 consensus M-phase inducer phosphatase [Cell cycle control, cell division, chromosome partitioning]
Probab=98.93 E-value=1.2e-09 Score=100.19 Aligned_cols=99 Identities=17% Similarity=0.210 Sum_probs=68.4
Q ss_pred CcccHHHHHHhhCCC------CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHH
Q 024280 76 PVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 149 (269)
Q Consensus 76 ~lIs~~eL~~~l~~~------~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l 149 (269)
..||++.|+.+++.. ..+||||| -+.||..|||+||+||.-.+... ..+
T Consensus 156 k~Is~etl~~ll~~~~~~~~~~~~iiDcR---------~pyEY~GGHIkgavnl~~~~~~~----------------~~f 210 (325)
T KOG3772|consen 156 KYISPETLKGLLQGKFSDFFDKFIIIDCR---------YPYEYEGGHIKGAVNLYSKELLQ----------------DFF 210 (325)
T ss_pred cccCHHHHHHHHHhccccceeeEEEEEeC---------CcccccCcccccceecccHhhhh----------------hhh
Confidence 479999999988742 25699999 46899999999999998654211 111
Q ss_pred HHc-CC---CCCCcEEEeCCCChHHHHHHHHHHHH------------cCCCcEEEccCcHHHHHhC
Q 024280 150 SAL-GL---ENKDGLVVYDGKGIFSAARVWWMFRV------------FGHDRVWVLDGGLPRWRAS 199 (269)
Q Consensus 150 ~~l-GI---~~d~~VVvY~~~g~~~A~ra~~~L~~------------~G~~nV~vLdGG~~~W~~~ 199 (269)
... +. .+...+|+||.-..-.+.+++..|+. +-|..+++|+||+.+|-..
T Consensus 211 ~~~~~~~~~~~~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~~ 276 (325)
T KOG3772|consen 211 LLKDGVPSGSKRVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFSN 276 (325)
T ss_pred ccccccccccCceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHHh
Confidence 111 11 12346799998544345666666762 4455799999999999864
No 58
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=98.89 E-value=5.5e-09 Score=102.11 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=59.8
Q ss_pred CCcEEEEeccCCCCCCCCCHhhHhhCCCCC----CeeccccccccccCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEeCC
Q 024280 90 PDLKVLDASWYMPDEQRNPFQEYQVAHIPG----ALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDG 165 (269)
Q Consensus 90 ~~~vIIDvR~~~~~~~~~~~~ey~~gHIPG----Ai~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~VVvY~~ 165 (269)
++.+|||+| ++++|..+|||| |+|+|+..+. ..+.. ++++++||+||.
T Consensus 406 ~~~~lIDVR---------~~~E~~~~hI~g~~~~a~niP~~~l~-----------------~~~~~--l~~~~~iivyC~ 457 (482)
T PRK01269 406 PDDVIIDIR---------SPDEQEDKPLKLEGVEVKSLPFYKLS-----------------TQFGD--LDQSKTYLLYCD 457 (482)
T ss_pred CCCEEEECC---------CHHHHhcCCCCCCCceEEECCHHHHH-----------------HHHhh--cCCCCeEEEECC
Confidence 457999999 689999999999 9999987642 22222 467889999999
Q ss_pred CChHHHHHHHHHHHHcCCCcEEEcc
Q 024280 166 KGIFSAARVWWMFRVFGHDRVWVLD 190 (269)
Q Consensus 166 ~g~~~A~ra~~~L~~~G~~nV~vLd 190 (269)
+|.+ |..++..|+.+||+||+++.
T Consensus 458 ~G~r-S~~aa~~L~~~G~~nv~~y~ 481 (482)
T PRK01269 458 RGVM-SRLQALYLREQGFSNVKVYR 481 (482)
T ss_pred CCHH-HHHHHHHHHHcCCccEEecC
Confidence 9986 78888999999999999875
No 59
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=98.63 E-value=3e-08 Score=91.58 Aligned_cols=103 Identities=23% Similarity=0.291 Sum_probs=79.3
Q ss_pred CCCcccHHHHHHhhCC-CCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHc
Q 024280 74 KEPVVSVDWLHANLRE-PDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL 152 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~-~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~l 152 (269)
++--||..++++++++ ...++||+| +..+|+..|+|+|+|||+.++..... ++..+.+
T Consensus 315 ~~~Rvsv~d~k~il~~~~~h~llDvR---------p~~~~eI~~lP~avNIPL~~l~~~~~------------~~~~~~~ 373 (427)
T KOG2017|consen 315 PDERVSVTDYKRILDSGAKHLLLDVR---------PSHEYEICRLPEAVNIPLKELRSRSG------------KKLQGDL 373 (427)
T ss_pred hhhcccHHHHHHHHhcCCCeEEEecc---------CcceEEEEecccccccchhhhhhhhh------------hhhcccc
Confidence 3556899999999987 468999999 78999999999999999988654332 1111111
Q ss_pred CCCCCCcEEEeCCCChHHHHHHHHHHHHcCCC-cEEEccCcHHHHHhC
Q 024280 153 GLENKDGLVVYDGKGIFSAARVWWMFRVFGHD-RVWVLDGGLPRWRAS 199 (269)
Q Consensus 153 GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~-nV~vLdGG~~~W~~~ 199 (269)
-+...+|+|.|+.|+. +.++.|.|+..+++ +|+.+-||+.+|.+.
T Consensus 374 -~~~~~~I~ViCrrGNd-SQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 374 -NTESKDIFVICRRGND-SQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred -cccCCCEEEEeCCCCc-hHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 1345669999999985 78888999866654 678889999999874
No 60
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.14 E-value=4.1e-06 Score=76.74 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=71.1
Q ss_pred CcccHHHHHHhhCCC------CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHH
Q 024280 76 PVVSVDWLHANLREP------DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAV 149 (269)
Q Consensus 76 ~lIs~~eL~~~l~~~------~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l 149 (269)
.-|+++-|+.+++.. +.+||||| -+.||..|||-+||||.-.+ ++.-.+
T Consensus 242 ~RIs~etlk~vl~g~~~~~f~kCiIIDCR---------FeYEY~GGHIinaVNi~s~~----------------~l~~~F 296 (427)
T COG5105 242 QRISVETLKQVLEGMYNIDFLKCIIIDCR---------FEYEYRGGHIINAVNISSTK----------------KLGLLF 296 (427)
T ss_pred hhcCHHHHHHHHhchhhhhhhceeEEeec---------ceeeecCceeeeeeecchHH----------------HHHHHH
Confidence 569999999988742 37899999 46899999999999997432 333333
Q ss_pred HHcCCCCCCcEEEeCCCChHHHHHHHHHHHHc------------CCCcEEEccCcHHHHHh
Q 024280 150 SALGLENKDGLVVYDGKGIFSAARVWWMFRVF------------GHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 150 ~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~------------G~~nV~vLdGG~~~W~~ 198 (269)
...-++.-.-+|+.|+-....|.+++.-|+.. =|..|+||+||+.+.-.
T Consensus 297 ~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 297 RHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred HhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 32223445667899986555688888777543 24579999999987654
No 61
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=97.58 E-value=1.1e-05 Score=74.97 Aligned_cols=43 Identities=12% Similarity=-0.005 Sum_probs=34.8
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeecccc
Q 024280 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVD 126 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~ 126 (269)
+.++-++++|.+.+.. ...++|+| +...|..+||||++++|..
T Consensus 12 f~~i~~~~~~~~~l~~-~~~~~d~r---------g~i~~a~egIngtis~~~~ 54 (314)
T PRK00142 12 YTPIEDPEAFRDEHLA-LCKSLGLK---------GRILVAEEGINGTVSGTIE 54 (314)
T ss_pred cccCCCHHHHHHHHHH-HHHHcCCe---------eEEEEcCCCceEEEEecHH
Confidence 3456778888887754 36789999 6889999999999999864
No 62
>KOG1717 consensus Dual specificity phosphatase [Defense mechanisms]
Probab=96.50 E-value=0.0022 Score=57.87 Aligned_cols=106 Identities=20% Similarity=0.280 Sum_probs=66.2
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeecccccccc-----ccCCCCCCCCCHHHHHHHHHH
Q 024280 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVAD-----RTTNLPHMLPSEEAFAAAVSA 151 (269)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~-----~~~~~~~~lp~~~~f~~~l~~ 151 (269)
-++++||...+..++++++||| + ...||.+|+++-+..+.. ..-++...+|........-.+
T Consensus 5 ~~s~~wlnr~l~~~nllllDCR---------s----es~~i~~A~~valPalmlrrl~~g~l~~ra~~p~~~d~~~~~~~ 71 (343)
T KOG1717|consen 5 SKSVAWLNRQLELGNLLLLDCR---------S----ESSHIESAINVALPALMLRRLTGGNLPVRALFPRSCDDKRFPAR 71 (343)
T ss_pred HHHHHHHHhhcccCceEEEecC---------C----ccchhhhhhhhcchHHHHHHHhCCCCcceeccCCcccccccccc
Confidence 4789999999998899999999 3 567999999987765321 122233344433221111000
Q ss_pred cCCCCCCcEEEeCCCCh-----HHHHHHH----HHHHHcCCCcEEEccCcHHHHHhC
Q 024280 152 LGLENKDGLVVYDGKGI-----FSAARVW----WMFRVFGHDRVWVLDGGLPRWRAS 199 (269)
Q Consensus 152 lGI~~d~~VVvY~~~g~-----~~A~ra~----~~L~~~G~~nV~vLdGG~~~W~~~ 199 (269)
-+..+||+||.+.. ..++++. .-++..|.. ++.|.||+....++
T Consensus 72 ---c~~v~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 72 ---CGTVTVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred ---CCcceeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 23467999987511 1133332 344566764 89999999887764
No 63
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=91.01 E-value=1.1 Score=35.17 Aligned_cols=87 Identities=18% Similarity=0.074 Sum_probs=39.0
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHh---hHhhCCCCCCeeccccccccccCCCCCCCCC---HHHHHHHHH
Q 024280 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQ---EYQVAHIPGALFFDVDGVADRTTNLPHMLPS---EEAFAAAVS 150 (269)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~---ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~---~~~f~~~l~ 150 (269)
-++++++.++.+.+=-.||+.|..-..+...... +-...+==.-+++|+.. .-++ .+.|.+.|.
T Consensus 14 Q~~~~d~~~la~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~----------~~~~~~~v~~f~~~l~ 83 (110)
T PF04273_consen 14 QPSPEDLAQLAAQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDG----------GAITEEDVEAFADALE 83 (110)
T ss_dssp S--HHHHHHHHHCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----T----------TT--HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCC----------CCCCHHHHHHHHHHHH
Confidence 4789999988776556899999432111000000 01111100134555542 1122 345666666
Q ss_pred HcCCCCCCcEEEeCCCChHHHHHHHHHHH
Q 024280 151 ALGLENKDGLVVYDGKGIFSAARVWWMFR 179 (269)
Q Consensus 151 ~lGI~~d~~VVvY~~~g~~~A~ra~~~L~ 179 (269)
.+ ..+|++||.+|.+ +..+ |.|.
T Consensus 84 ~~----~~Pvl~hC~sG~R-a~~l-~~l~ 106 (110)
T PF04273_consen 84 SL----PKPVLAHCRSGTR-ASAL-WALA 106 (110)
T ss_dssp TT----TTSEEEE-SCSHH-HHHH-HHHH
T ss_pred hC----CCCEEEECCCChh-HHHH-HHHH
Confidence 53 4699999999997 5544 5554
No 64
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=90.63 E-value=1.8 Score=34.98 Aligned_cols=111 Identities=18% Similarity=0.181 Sum_probs=53.8
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhH-hhCCCCCC--eeccccccccccCCCCCC-CCCHHHHHHHHHHc
Q 024280 77 VVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEY-QVAHIPGA--LFFDVDGVADRTTNLPHM-LPSEEAFAAAVSAL 152 (269)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey-~~gHIPGA--i~ip~~~l~~~~~~~~~~-lp~~~~f~~~l~~l 152 (269)
-++++++..+.+.+=-.|||-|+............. ....-+|- +++|+.. ..+ -...+.|.+.+..
T Consensus 14 qlt~~d~~~L~~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~--------~~~~~~~v~~f~~~~~~- 84 (135)
T TIGR01244 14 QLTKADAAQAAQLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTA--------GDITPDDVETFRAAIGA- 84 (135)
T ss_pred CCCHHHHHHHHHCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCC--------CCCCHHHHHHHHHHHHh-
Confidence 377888877654443589999943211110001110 00011232 3444331 000 0123456666653
Q ss_pred CCCCCCcEEEeCCCChHHHHHHHH-HHHHcCCCcEEEccCcHHHHHhCCCcee
Q 024280 153 GLENKDGLVVYDGKGIFSAARVWW-MFRVFGHDRVWVLDGGLPRWRASGYDVE 204 (269)
Q Consensus 153 GI~~d~~VVvY~~~g~~~A~ra~~-~L~~~G~~nV~vLdGG~~~W~~~G~pv~ 204 (269)
.+.+|++||.+|.+ ++.+|. .+...|...-.++. .=+..|+.++
T Consensus 85 ---~~~pvL~HC~sG~R-t~~l~al~~~~~g~~~~~i~~----~~~~~G~~~~ 129 (135)
T TIGR01244 85 ---AEGPVLAYCRSGTR-SSLLWGFRQAAEGVPVEEIVR----RAQAAGYDLS 129 (135)
T ss_pred ---CCCCEEEEcCCChH-HHHHHHHHHHHcCCCHHHHHH----HHHHcCCCcc
Confidence 36899999999996 454443 33445654222222 2255666655
No 65
>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]
Probab=89.52 E-value=1.3 Score=43.22 Aligned_cols=100 Identities=27% Similarity=0.333 Sum_probs=60.8
Q ss_pred ccHHHHHHhhC--CC--CcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHc-
Q 024280 78 VSVDWLHANLR--EP--DLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSAL- 152 (269)
Q Consensus 78 Is~~eL~~~l~--~~--~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~l- 152 (269)
|++-+|.++-+ .+ +..|+|+| +.+.|..||+-.|.|++-.- |+-.+++|+..+..+
T Consensus 309 isv~el~~~~~~~~~~VrFFiVDcR---------paeqynaGHlstaFhlDc~l----------mlqeP~~Fa~av~sLl 369 (669)
T KOG3636|consen 309 ISVIELTSHDEISSGSVRFFIVDCR---------PAEQYNAGHLSTAFHLDCVL----------MLQEPEKFAIAVNSLL 369 (669)
T ss_pred hhHHHhhcccccccCceEEEEEecc---------chhhcccccchhhhcccHHH----------HhcCHHHHHHHHHHHH
Confidence 66666655432 22 46799999 78999999999999987543 445567777655433
Q ss_pred -----CCCCC-----CcEEEeCCCChH----HHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 153 -----GLENK-----DGLVVYDGKGIF----SAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 153 -----GI~~d-----~~VVvY~~~g~~----~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
-|..+ ..+.+. ++|.- .-.-+..++-.-+-.-|.++.||+.+..
T Consensus 370 ~aqrqtie~~s~aggeHlcfm-GsGr~EED~YmnMviA~FlQKnk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 370 CAQRQTIERDSNAGGEHLCFM-GSGRDEEDNYMNMVIAMFLQKNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHhhhccccCCcceEEEe-ccCcchHHHHHHHHHHHHHhcCceEEEEecchHHHHH
Confidence 23322 344444 33221 1122223333345456889999998776
No 66
>KOG1530 consensus Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=89.06 E-value=0.24 Score=40.26 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=24.1
Q ss_pred cccCHHHHHHHhhCCCcEEEccCCCCC
Q 024280 243 LIWTLEQVKRNIEEGTYQLVDARSKAR 269 (269)
Q Consensus 243 ~~~~~~~v~~~l~~~~~~iiDaRs~~r 269 (269)
..++.+++++.++.+++++||+|.++|
T Consensus 23 ~sv~~~qvk~L~~~~~~~llDVRepeE 49 (136)
T KOG1530|consen 23 QSVSVEQVKNLLQHPDVVLLDVREPEE 49 (136)
T ss_pred EEEEHHHHHHHhcCCCEEEEeecCHHH
Confidence 458899999999988899999999976
No 67
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=84.75 E-value=1.4 Score=36.83 Aligned_cols=31 Identities=13% Similarity=0.255 Sum_probs=25.6
Q ss_pred ccCCccccCHHHHHHHhhCCCcEEEccCCCC
Q 024280 238 KFQPHLIWTLEQVKRNIEEGTYQLVDARSKA 268 (269)
Q Consensus 238 ~~~~~~~~~~~~v~~~l~~~~~~iiDaRs~~ 268 (269)
.......++.+++++.+++++.+|||+|+++
T Consensus 31 ~~~~~~~vs~~el~~~l~~~~~~lIDVR~~~ 61 (162)
T TIGR03865 31 TLKGARVLDTEAAQALLARGPVALIDVYPRP 61 (162)
T ss_pred ccCCccccCHHHHHHHHhCCCcEEEECCCCc
Confidence 3455667999999999988889999999754
No 68
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=83.73 E-value=0.22 Score=49.61 Aligned_cols=96 Identities=20% Similarity=0.178 Sum_probs=57.9
Q ss_pred CcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeeccccccccccCCCCCCCCCHHHHHHHHHHcCCC
Q 024280 76 PVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVDGVADRTTNLPHMLPSEEAFAAAVSALGLE 155 (269)
Q Consensus 76 ~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~ 155 (269)
+-|+++++..+ +.+.++|.| ...+|..+|+++++|+|+.. .+.+- . .++-.+..+. .
T Consensus 622 prmsAedl~~~---~~l~v~d~r---------~~~ef~r~~~s~s~nip~~~-~ea~l--~-~~~~l~~~~~-------~ 678 (725)
T KOG1093|consen 622 PRISAEDLIWL---KMLYVLDTR---------QESEFQREHFSDSINIPFNN-HEADL--D-WLRFLPGIVC-------S 678 (725)
T ss_pred ccccHHHHHHH---HHHHHHhHH---------HHHHHHHhhccccccCCccc-hHHHH--H-HhhcchHhHH-------h
Confidence 45778777766 457899999 57999999999999999872 11100 0 0100011111 2
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHH
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPR 195 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~ 195 (269)
....+|+|....- .+++....+..+-+.++-+|.+|+++
T Consensus 679 ~~~~~v~~~~~~K-~~~e~~~~~~~mk~p~~cil~~~~~~ 717 (725)
T KOG1093|consen 679 EGKKCVVVGKNDK-HAAERLTELYVMKVPRICILHDGFNN 717 (725)
T ss_pred hCCeEEEeccchH-HHHHHhhHHHHhcccHHHHHHHHHhh
Confidence 3445666654433 34554444444457777889998873
No 69
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=81.96 E-value=5.3 Score=37.18 Aligned_cols=36 Identities=14% Similarity=0.023 Sum_probs=30.7
Q ss_pred CCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhh---CCCC
Q 024280 74 KEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPFQEYQV---AHIP 118 (269)
Q Consensus 74 ~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~---gHIP 118 (269)
..+.+...+|.+.+.+.+..|||+| +...|.. ||||
T Consensus 134 g~tg~gKt~Ll~~L~~~~~~VvDlr---------~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 134 GMTGSGKTELLHALANAGAQVLDLE---------GLANHRGSSFGALG 172 (311)
T ss_pred CCCCcCHHHHHHHHhcCCCeEEECC---------chHHhcCcccCCCC
Confidence 3577899999999988788999999 6788887 8888
No 70
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=71.69 E-value=2.7 Score=34.90 Aligned_cols=46 Identities=15% Similarity=0.187 Sum_probs=24.7
Q ss_pred cCCCCCCcEEEeC-CC---ChHHHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 152 LGLENKDGLVVYD-GK---GIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 152 lGI~~d~~VVvY~-~~---g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
+|++++..+++++ +. .......++.+|+.+|..+...||||-..-.
T Consensus 95 iG~~~~g~l~l~~vdg~~~~g~tl~ela~~l~~lG~~~AinLDGGgSs~l 144 (170)
T PF09992_consen 95 IGVTADGKLLLIVVDGRQSAGMTLDELAQLLKSLGCVDAINLDGGGSSTL 144 (170)
T ss_dssp EEE-TTSEEEEEEE----S--B-HHHHHHHHHHHT-SEEEE---GGG--E
T ss_pred EEEeCCCcEEEEEEcCCcCCCCCHHHHHHHHHHcCcCeEEEecCCcceEE
Confidence 4666666665554 32 1234667777898899999999999965433
No 71
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=68.48 E-value=22 Score=35.71 Aligned_cols=31 Identities=16% Similarity=0.148 Sum_probs=20.3
Q ss_pred CcEEEeCCCChH--HHHHHHHHHHHcCCCcEEEc
Q 024280 158 DGLVVYDGKGIF--SAARVWWMFRVFGHDRVWVL 189 (269)
Q Consensus 158 ~~VVvY~~~g~~--~A~ra~~~L~~~G~~nV~vL 189 (269)
..|+|+|+.|+- .+-.++..|...|++ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 579999986542 233355678888996 5543
No 72
>PLN02727 NAD kinase
Probab=66.98 E-value=40 Score=36.08 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=54.9
Q ss_pred CCcccceeeccccCCCCCcccCCCCCCCCcccHHHHHHhhCCCCcEEEEeccCCCCCCCCCH--hhHhhCCCCCCeeccc
Q 024280 48 SSQSPCVMSSLAAGRRADYSTLSVSPKEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPF--QEYQVAHIPGALFFDV 125 (269)
Q Consensus 48 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~lIs~~eL~~~l~~~~~vIIDvR~~~~~~~~~~~--~ey~~gHIPGAi~ip~ 125 (269)
+.|+..-+|. ......+......---..-+++++++.+.+.+=-.||+.|......+.... ++-...+==.-+++|+
T Consensus 240 ~n~~~v~~~~-~~~~~~~~~~~~~~~rsgQpspe~la~LA~~GfKTIINLRpd~E~~q~~~~ee~eAae~~GL~yVhIPV 318 (986)
T PLN02727 240 ANWNPVYLST-SKEDIDSKESEAAFWRGGQVTEEGLKWLLEKGFKTIVDLRAEIVKDNFYQAAVDDAISSGKIEVVKIPV 318 (986)
T ss_pred cccceeeecc-cccccccccceeeEEEeCCCCHHHHHHHHHCCCeEEEECCCCCcCCCchhHHHHHHHHHcCCeEEEeec
Confidence 5677665555 222222221111111123589999988776543579999943221110000 0000001001345554
Q ss_pred cccccccCCCCCCCCCHHHHHHHHHHcCCCCCCcEEEeCCCChHH
Q 024280 126 DGVADRTTNLPHMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFS 170 (269)
Q Consensus 126 ~~l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~ 170 (269)
.. ...|+.++++++...+--....||++||.+|.++
T Consensus 319 s~---------~~apt~EqVe~fa~~l~~slpkPVLvHCKSGarR 354 (986)
T PLN02727 319 EV---------RTAPSAEQVEKFASLVSDSSKKPIYLHSKEGVWR 354 (986)
T ss_pred CC---------CCCCCHHHHHHHHHHHHhhcCCCEEEECCCCCch
Confidence 32 1344555555554443113478999999998743
No 73
>COG2603 Predicted ATPase [General function prediction only]
Probab=61.41 E-value=5.7 Score=36.77 Aligned_cols=36 Identities=19% Similarity=0.188 Sum_probs=27.7
Q ss_pred HHHHHhhCCCCcEEEEeccCCCCCCCCCHhhHhhCCCCCCeecccc
Q 024280 81 DWLHANLREPDLKVLDASWYMPDEQRNPFQEYQVAHIPGALFFDVD 126 (269)
Q Consensus 81 ~eL~~~l~~~~~vIIDvR~~~~~~~~~~~~ey~~gHIPGAi~ip~~ 126 (269)
+....++. .+..+|||| .+-+|..||-|+++|+|.-
T Consensus 6 q~~~~~~~-~~~~lid~r---------ap~ef~~g~~~ia~nl~~~ 41 (334)
T COG2603 6 QDYRALLL-ADTPLIDVR---------APIEFENGAMPIAINLPLM 41 (334)
T ss_pred HHHHHHHh-cCCceeecc---------chHHHhcccchhhhccccc
Confidence 34444443 357899999 5789999999999999954
No 74
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=58.13 E-value=24 Score=27.60 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=17.9
Q ss_pred CCCCcEEEeCCCChHHHH-H-HHHHHHHcCC
Q 024280 155 ENKDGLVVYDGKGIFSAA-R-VWWMFRVFGH 183 (269)
Q Consensus 155 ~~d~~VVvY~~~g~~~A~-r-a~~~L~~~G~ 183 (269)
..+.+|+|+|..|...+. - +.+++...|+
T Consensus 79 ~~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 79 EKGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred hcCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 356799999998864343 2 3345555443
No 75
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=52.41 E-value=9.4 Score=36.32 Aligned_cols=26 Identities=15% Similarity=0.129 Sum_probs=22.1
Q ss_pred ccCHHHHHHHhhCCCcEEEccCCCCC
Q 024280 244 IWTLEQVKRNIEEGTYQLVDARSKAR 269 (269)
Q Consensus 244 ~~~~~~v~~~l~~~~~~iiDaRs~~r 269 (269)
.++.+++.+.+++++.+|||+|+++|
T Consensus 272 ~~~~~el~~~l~~~~~~lIDVR~~~E 297 (370)
T PRK05600 272 RTDTTSLIDATLNGSATLLDVREPHE 297 (370)
T ss_pred ccCHHHHHHHHhcCCeEEEECCCHHH
Confidence 57889999988877788999999864
No 76
>PRK01415 hypothetical protein; Validated
Probab=51.32 E-value=12 Score=33.67 Aligned_cols=29 Identities=10% Similarity=0.039 Sum_probs=23.5
Q ss_pred CccccCHHHHHHHhhCCCcEEEccCCCCC
Q 024280 241 PHLIWTLEQVKRNIEEGTYQLVDARSKAR 269 (269)
Q Consensus 241 ~~~~~~~~~v~~~l~~~~~~iiDaRs~~r 269 (269)
....++.+++.+.+++++.+|||+|.+.|
T Consensus 110 ~g~~i~p~e~~~ll~~~~~vvIDVRn~~E 138 (247)
T PRK01415 110 KGEYIEPKDWDEFITKQDVIVIDTRNDYE 138 (247)
T ss_pred CccccCHHHHHHHHhCCCcEEEECCCHHH
Confidence 34458888999999888999999998753
No 77
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=48.66 E-value=36 Score=27.47 Aligned_cols=83 Identities=13% Similarity=0.055 Sum_probs=46.1
Q ss_pred cccHHHHHHhhCCCCcEEEEeccCCCCC-CCCCHhh---HhhCCCCCCeeccccc--cccccCCCCCCCCCHHHHHHHHH
Q 024280 77 VVSVDWLHANLREPDLKVLDASWYMPDE-QRNPFQE---YQVAHIPGALFFDVDG--VADRTTNLPHMLPSEEAFAAAVS 150 (269)
Q Consensus 77 lIs~~eL~~~l~~~~~vIIDvR~~~~~~-~~~~~~e---y~~gHIPGAi~ip~~~--l~~~~~~~~~~lp~~~~f~~~l~ 150 (269)
-++++++.++...+=..||.-|++-..+ +++...+ -...-+. -.+||+.. +.. -+.+.|++.|.
T Consensus 15 Qi~~~D~~~iaa~GFksiI~nRPDgEe~~QP~~~~i~~aa~~aGl~-y~~iPV~~~~iT~---------~dV~~f~~Al~ 84 (130)
T COG3453 15 QISPADIASIAALGFKSIICNRPDGEEPGQPGFAAIAAAAEAAGLT-YTHIPVTGGGITE---------ADVEAFQRALD 84 (130)
T ss_pred CCCHHHHHHHHHhccceecccCCCCCCCCCCChHHHHHHHHhcCCc-eEEeecCCCCCCH---------HHHHHHHHHHH
Confidence 4788898887765546789999543221 1110111 1111122 33455432 111 12456888887
Q ss_pred HcCCCCCCcEEEeCCCChHHHHHH
Q 024280 151 ALGLENKDGLVVYDGKGIFSAARV 174 (269)
Q Consensus 151 ~lGI~~d~~VVvY~~~g~~~A~ra 174 (269)
++ +-+|+.||.+|.+ +..+
T Consensus 85 ea----egPVlayCrsGtR-s~~l 103 (130)
T COG3453 85 EA----EGPVLAYCRSGTR-SLNL 103 (130)
T ss_pred Hh----CCCEEeeecCCch-HHHH
Confidence 65 6789999999987 4444
No 78
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=47.58 E-value=44 Score=30.37 Aligned_cols=50 Identities=14% Similarity=0.034 Sum_probs=34.9
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcH
Q 024280 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (269)
Q Consensus 142 ~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~ 193 (269)
..-|.+.+++.|+..+..++|...+|. |..+.+.|...|.++|.+++=-.
T Consensus 107 ~~Gf~~~L~~~~~~~~~~vlilGaGGa--arAi~~aL~~~g~~~i~i~nR~~ 156 (272)
T PRK12550 107 YIAIAKLLASYQVPPDLVVALRGSGGM--AKAVAAALRDAGFTDGTIVARNE 156 (272)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEeCCH
Confidence 345777777777776667777754332 44456778899999999987643
No 79
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=43.60 E-value=43 Score=28.25 Aligned_cols=48 Identities=19% Similarity=0.173 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHHc--CCCCCCcEEEeCCCChHHH-HH-HHHHHHHcCCCcE
Q 024280 139 LPSEEAFAAAVSAL--GLENKDGLVVYDGKGIFSA-AR-VWWMFRVFGHDRV 186 (269)
Q Consensus 139 lp~~~~f~~~l~~l--GI~~d~~VVvY~~~g~~~A-~r-a~~~L~~~G~~nV 186 (269)
.|+.+++.+++..+ -..+...|||.|..|...+ +- ++|+|.+.|..++
T Consensus 85 ~p~~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~~~~~~~ 136 (180)
T COG2453 85 VPDLEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLYGGLSLA 136 (180)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHHcCCCCH
Confidence 34444544444322 1345569999999876443 33 3477777666544
No 80
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=41.09 E-value=64 Score=25.28 Aligned_cols=36 Identities=11% Similarity=0.106 Sum_probs=22.6
Q ss_pred HHHHHcCCCCCCcEEEeCCCCh-HHHHH-HHHHHHHcCC
Q 024280 147 AAVSALGLENKDGLVVYDGKGI-FSAAR-VWWMFRVFGH 183 (269)
Q Consensus 147 ~~l~~lGI~~d~~VVvY~~~g~-~~A~r-a~~~L~~~G~ 183 (269)
+++... +..+.+|+|+|..|. ++++- ++|++...|+
T Consensus 69 ~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~ 106 (138)
T smart00195 69 EFIEDA-EKKGGKVLVHCQAGVSRSATLIIAYLMKYRNL 106 (138)
T ss_pred HHHHHH-hcCCCeEEEECCCCCchHHHHHHHHHHHHhCC
Confidence 344433 467789999999885 44332 4456666665
No 81
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=41.03 E-value=1.7e+02 Score=22.76 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=34.8
Q ss_pred CCHHHHHHHHHHcCCCCCCcEEEeCCCCh---HHHHHHHHHHHHcCCCcEEEccCc------HHHHHhCCC
Q 024280 140 PSEEAFAAAVSALGLENKDGLVVYDGKGI---FSAARVWWMFRVFGHDRVWVLDGG------LPRWRASGY 201 (269)
Q Consensus 140 p~~~~f~~~l~~lGI~~d~~VVvY~~~g~---~~A~ra~~~L~~~G~~nV~vLdGG------~~~W~~~G~ 201 (269)
.+.+++.+...+. +-.+|+.|.... ..+......|+..|++++.++-|| +..|++.|.
T Consensus 37 vp~e~~~~~a~~~----~~d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~ 103 (122)
T cd02071 37 QTPEEIVEAAIQE----DVDVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGV 103 (122)
T ss_pred CCHHHHHHHHHHc----CCCEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCC
Confidence 3445566655543 344777775422 224455667888888888888886 234555553
No 82
>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B ....
Probab=40.07 E-value=67 Score=22.60 Aligned_cols=46 Identities=30% Similarity=0.445 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHcCCCCCCcEEEeCC-CChHHHHHHHHHHHHcCCCcEEEccC
Q 024280 140 PSEEAFAAAVSALGLENKDGLVVYDG-KGIFSAARVWWMFRVFGHDRVWVLDG 191 (269)
Q Consensus 140 p~~~~f~~~l~~lGI~~d~~VVvY~~-~g~~~A~ra~~~L~~~G~~nV~vLdG 191 (269)
|.+.-|...++.++++..+.++|=|. .....++ +.+|+.-|.++.|
T Consensus 5 P~p~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a------~~~G~~~ilV~tG 51 (75)
T PF13242_consen 5 PSPGMLEQALKRLGVDPSRCVMVGDSLETDIEAA------KAAGIDTILVLTG 51 (75)
T ss_dssp TSHHHHHHHHHHHTSGGGGEEEEESSTTTHHHHH------HHTTSEEEEESSS
T ss_pred CcHHHHHHHHHHcCCCHHHEEEEcCCcHhHHHHH------HHcCCcEEEECCC
Confidence 66788999999999998887777766 3332233 3579988888876
No 83
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=40.07 E-value=53 Score=23.43 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=26.6
Q ss_pred CCCCCcEEEeCCCChHHHHHHHHHHHHcCCC
Q 024280 154 LENKDGLVVYDGKGIFSAARVWWMFRVFGHD 184 (269)
Q Consensus 154 I~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~ 184 (269)
+..+..|+||...++....++...|+..|.+
T Consensus 4 ~~~~~~V~ly~~~~Cp~C~~ak~~L~~~gi~ 34 (79)
T TIGR02190 4 ARKPESVVVFTKPGCPFCAKAKATLKEKGYD 34 (79)
T ss_pred cCCCCCEEEEECCCCHhHHHHHHHHHHcCCC
Confidence 3566789999999998888899999999986
No 84
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=39.68 E-value=1.9e+02 Score=23.26 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEeCCCCh---HHHHHHHHHHHHcCCCcEEEccCc------HHHHHhCCC
Q 024280 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGI---FSAARVWWMFRVFGHDRVWVLDGG------LPRWRASGY 201 (269)
Q Consensus 139 lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~---~~A~ra~~~L~~~G~~nV~vLdGG------~~~W~~~G~ 201 (269)
..++++|.+...+ .+-.+|+.|.... .....+...|+..|..++.++-|| +..|++.|.
T Consensus 39 ~~s~e~~v~aa~e----~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 39 FQTPEEIARQAVE----ADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred CCCHHHHHHHHHH----cCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 3445566555543 3555888886421 224556667888888788888887 245555554
No 85
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=33.90 E-value=92 Score=28.61 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=35.9
Q ss_pred HHHHHHHHHHcCCCC---CCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHH
Q 024280 142 EEAFAAAVSALGLEN---KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194 (269)
Q Consensus 142 ~~~f~~~l~~lGI~~---d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~ 194 (269)
..-|.+.|.+.++.. ++.+++... |+ .|..+.+.|...|..++.++|--..
T Consensus 108 ~~G~~~~L~~~~~~~~~~~~~vlilGA-GG-AarAv~~aL~~~g~~~i~V~NRt~~ 161 (283)
T COG0169 108 GIGFLRALKEFGLPVDVTGKRVLILGA-GG-AARAVAFALAEAGAKRITVVNRTRE 161 (283)
T ss_pred HHHHHHHHHhcCCCcccCCCEEEEECC-cH-HHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 456788888876543 356777654 44 2555778999999999999987553
No 86
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=33.54 E-value=1.3e+02 Score=27.17 Aligned_cols=47 Identities=17% Similarity=0.200 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHcC--CCCCCcEEEeCCCChHHHHH-HHHHHHHcCCC
Q 024280 138 MLPSEEAFAAAVSALG--LENKDGLVVYDGKGIFSAAR-VWWMFRVFGHD 184 (269)
Q Consensus 138 ~lp~~~~f~~~l~~lG--I~~d~~VVvY~~~g~~~A~r-a~~~L~~~G~~ 184 (269)
..|+.+.+.+++..+. +..+..|+|.|..|...++- ++..|-..|++
T Consensus 149 ~aPs~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~~Gms 198 (241)
T PTZ00393 149 DAPTVDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIEFGMD 198 (241)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4566665555555431 34677899999987654433 33333335653
No 87
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=32.75 E-value=30 Score=33.08 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=22.5
Q ss_pred CccccCHHHHHHHhhCC-CcEEEccCCCCC
Q 024280 241 PHLIWTLEQVKRNIEEG-TYQLVDARSKAR 269 (269)
Q Consensus 241 ~~~~~~~~~v~~~l~~~-~~~iiDaRs~~r 269 (269)
....++.+++++.++++ +.+|||+|++++
T Consensus 285 ~~~~Is~~el~~~l~~~~~~~lIDvR~~~e 314 (392)
T PRK07878 285 AGSTITPRELKEWLDSGKKIALIDVREPVE 314 (392)
T ss_pred CCCccCHHHHHHHHhCCCCeEEEECCCHHH
Confidence 44568999999988754 578999998753
No 88
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=32.10 E-value=71 Score=22.08 Aligned_cols=26 Identities=15% Similarity=0.113 Sum_probs=23.1
Q ss_pred cEEEeCCCChHHHHHHHHHHHHcCCC
Q 024280 159 GLVVYDGKGIFSAARVWWMFRVFGHD 184 (269)
Q Consensus 159 ~VVvY~~~g~~~A~ra~~~L~~~G~~ 184 (269)
.|++|...++....++..+|+..|.+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~i~ 27 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENGIS 27 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 58999999998899999999998876
No 89
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=31.40 E-value=58 Score=27.67 Aligned_cols=28 Identities=18% Similarity=0.146 Sum_probs=15.4
Q ss_pred CCCCcEEEeCCCChHHHHH-HHHHHHHcC
Q 024280 155 ENKDGLVVYDGKGIFSAAR-VWWMFRVFG 182 (269)
Q Consensus 155 ~~d~~VVvY~~~g~~~A~r-a~~~L~~~G 182 (269)
..+.+|++.|.+|...+.- ++-+|-.+|
T Consensus 131 ~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 131 ENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 5678999999987655544 334454555
No 90
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=30.12 E-value=78 Score=23.93 Aligned_cols=35 Identities=14% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCC-cEEEcc
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHD-RVWVLD 190 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~-nV~vLd 190 (269)
++.+|++|...++....++..+|..+|.+ .+..+|
T Consensus 6 ~~~~Vvvysk~~Cp~C~~ak~~L~~~~i~~~~vdid 41 (99)
T TIGR02189 6 SEKAVVIFSRSSCCMCHVVKRLLLTLGVNPAVHEID 41 (99)
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEEcC
Confidence 35679999999998899999999999986 344554
No 91
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=29.90 E-value=60 Score=23.13 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=21.5
Q ss_pred ccccCHHHHHHHhhC-CCcEEEccCCCC
Q 024280 242 HLIWTLEQVKRNIEE-GTYQLVDARSKA 268 (269)
Q Consensus 242 ~~~~~~~~v~~~l~~-~~~~iiDaRs~~ 268 (269)
+..+|+++|++.+.+ .+++++|+.+-+
T Consensus 17 s~YiTL~di~~lV~~g~~~~V~D~ktge 44 (64)
T PF07879_consen 17 SSYITLEDIAQLVREGEDFKVVDAKTGE 44 (64)
T ss_pred ceeEeHHHHHHHHHCCCeEEEEECCCCc
Confidence 445999999998855 579999998743
No 92
>PRK07411 hypothetical protein; Validated
Probab=29.67 E-value=31 Score=32.95 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=20.8
Q ss_pred cccCHHHHHHHhhCC--CcEEEccCCCCC
Q 024280 243 LIWTLEQVKRNIEEG--TYQLVDARSKAR 269 (269)
Q Consensus 243 ~~~~~~~v~~~l~~~--~~~iiDaRs~~r 269 (269)
..++.+++.+.++++ +.+|||+|+++|
T Consensus 282 ~~Is~~el~~~l~~~~~~~vlIDVR~~~E 310 (390)
T PRK07411 282 PEMTVTELKALLDSGADDFVLIDVRNPNE 310 (390)
T ss_pred CccCHHHHHHHHhCCCCCeEEEECCCHHH
Confidence 348889999888653 478999998753
No 93
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=29.55 E-value=64 Score=25.00 Aligned_cols=42 Identities=7% Similarity=0.121 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCCCChHHHHH--HHHHHHHcCCC
Q 024280 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAAR--VWWMFRVFGHD 184 (269)
Q Consensus 142 ~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~r--a~~~L~~~G~~ 184 (269)
...+.+++... +.++..|+|+|..|...++- +++++...|.+
T Consensus 59 ~~~~~~~i~~~-~~~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 59 LDQAVEFIENA-ISEGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp HHHHHHHHHHH-HHTTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred HHHHHHhhhhh-hcccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 34455566554 45678899999987643333 44566666663
No 94
>PF08874 DUF1835: Domain of unknown function (DUF1835); InterPro: IPR014973 This group of proteins are functionally uncharacterised.
Probab=28.77 E-value=2e+02 Score=22.29 Aligned_cols=47 Identities=15% Similarity=0.465 Sum_probs=30.9
Q ss_pred HHHHHHHHc-CCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCc--EEEcc
Q 024280 144 AFAAAVSAL-GLENKDGLVVYDGKGIFSAARVWWMFRVFGHDR--VWVLD 190 (269)
Q Consensus 144 ~f~~~l~~l-GI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~n--V~vLd 190 (269)
.+.+.+..+ .+..+.+|++-++.....-.-++|+|..+...+ |++++
T Consensus 72 ~~~~~~~~l~~l~~~~~I~iW~~~~~~dq~gl~~~l~~L~~~~~~I~~v~ 121 (124)
T PF08874_consen 72 RFEQELKRLEELPEDDPIVIWYGDNAYDQLGLRYLLSLLKDKPNRIYVVN 121 (124)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 344444432 456677999988876655667778888877764 66654
No 95
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=28.54 E-value=2.1e+02 Score=21.96 Aligned_cols=46 Identities=20% Similarity=0.278 Sum_probs=26.9
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccC
Q 024280 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (269)
Q Consensus 143 ~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdG 191 (269)
+++.+.+.+. +.++.|++.|+-++.+-... .......+++++++.|
T Consensus 45 ~~l~~~i~~~--~~~~~vlil~Dl~ggsp~n~-a~~~~~~~~~~~vi~G 90 (116)
T PF03610_consen 45 EKLEEAIEEL--DEGDGVLILTDLGGGSPFNE-AARLLLDKPNIRVISG 90 (116)
T ss_dssp HHHHHHHHHC--CTTSEEEEEESSTTSHHHHH-HHHHHCTSTTEEEEES
T ss_pred HHHHHHHHhc--cCCCcEEEEeeCCCCccchH-HHHHhccCCCEEEEec
Confidence 3556666553 66778887777544333333 3334456667887776
No 96
>PRK05320 rhodanese superfamily protein; Provisional
Probab=28.39 E-value=35 Score=30.77 Aligned_cols=26 Identities=15% Similarity=0.225 Sum_probs=19.0
Q ss_pred ccCHHHHHHHhhC------CCcEEEccCCCCC
Q 024280 244 IWTLEQVKRNIEE------GTYQLVDARSKAR 269 (269)
Q Consensus 244 ~~~~~~v~~~l~~------~~~~iiDaRs~~r 269 (269)
.++.+++.+.+++ ++.+|||+|++.|
T Consensus 111 ~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E 142 (257)
T PRK05320 111 SVDAATLKRWLDQGHDDAGRPVVMLDTRNAFE 142 (257)
T ss_pred eeCHHHHHHHHhccccccCCCeEEEECCCHHH
Confidence 4777888877654 2478999998753
No 97
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=26.43 E-value=83 Score=30.45 Aligned_cols=55 Identities=22% Similarity=0.200 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEeCCC---C------hHHHHHHHHHHHHcCCCcEEEccCcHHHHHhC
Q 024280 138 MLPSEEAFAAAVSALGLENKDGLVVYDGK---G------IFSAARVWWMFRVFGHDRVWVLDGGLPRWRAS 199 (269)
Q Consensus 138 ~lp~~~~f~~~l~~lGI~~d~~VVvY~~~---g------~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~ 199 (269)
.+.+.+.+.+.+.. .++.+||+- + +.-..+....|+.+||+ +.+|-||+.+|...
T Consensus 17 ~i~~ee~l~~ll~~------~~~~~Y~GfDPTa~slHlGhlv~l~kL~~fQ~aGh~-~ivLigd~ta~IgD 80 (401)
T COG0162 17 QITDEEELRKLLEE------GPLRVYIGFDPTAPSLHLGHLVPLMKLRRFQDAGHK-PIVLIGDATAMIGD 80 (401)
T ss_pred ccCcHHHHHHHHhc------CCceEEEeeCCCCCccchhhHHHHHHHHHHHHCCCe-EEEEecccceecCC
Confidence 34556677776653 178899873 2 11123334457889997 88999999999864
No 98
>PRK05852 acyl-CoA synthetase; Validated
Probab=25.51 E-value=1.6e+02 Score=28.36 Aligned_cols=51 Identities=20% Similarity=0.114 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHH
Q 024280 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLP 194 (269)
Q Consensus 142 ~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~ 194 (269)
...++..|.++|+.+++.|.+|+..+.. ...+++.+...|.. +..++-++.
T Consensus 53 ~~~~a~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~-~v~l~~~~~ 103 (534)
T PRK05852 53 VDDLAGQLTRSGLLPGDRVALRMGSNAE-FVVALLAASRADLV-VVPLDPALP 103 (534)
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCcHH-HHHHHHHHHHcCcE-EeecCCCCC
Confidence 3568889999999999999999988765 45566777778864 333454443
No 99
>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1. This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).
Probab=25.25 E-value=62 Score=25.85 Aligned_cols=66 Identities=17% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCCCeeccccc---cccccCCCCCCCCCHHHHHHHHHHcCCCCCCcE-EEeCCCChHHHHHHHHHHHHc-CCCcEEEccC
Q 024280 117 IPGALFFDVDG---VADRTTNLPHMLPSEEAFAAAVSALGLENKDGL-VVYDGKGIFSAARVWWMFRVF-GHDRVWVLDG 191 (269)
Q Consensus 117 IPGAi~ip~~~---l~~~~~~~~~~lp~~~~f~~~l~~lGI~~d~~V-VvY~~~g~~~A~ra~~~L~~~-G~~nV~vLdG 191 (269)
|.||+.+.-+. +.. ...+-+.+.+.+.+++.++-+ |++.-+....|+.=+..++.+ |+++|-+++-
T Consensus 4 IRGAtTv~~nt~e~I~~---------at~eLl~~ii~~N~l~~edivSv~FT~T~DL~a~FPA~aaR~~~Gw~~Vplmc~ 74 (117)
T TIGR01796 4 VRGATTVERNEAEEIGE---------AVAELLTELMERNELTPEDLISVIFTVTEDLHADFPAAAARGLPGWTDVPVMCA 74 (117)
T ss_pred ccCceecCCCCHHHHHH---------HHHHHHHHHHHHcCCCHHHEEEEEEEecCcccccChHHHHHhccCCCCcceecc
Confidence 66777776443 111 124567889999999987766 555443322344445567777 9999987763
No 100
>TIGR02804 ExbD_2 TonB system transport protein ExbD, group 2. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=24.95 E-value=3.1e+02 Score=21.33 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHcCCCCCCcEEEeCCCCh--HHHHHHHHHHHHcCCCcEEEc
Q 024280 141 SEEAFAAAVSALGLENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (269)
Q Consensus 141 ~~~~f~~~l~~lGI~~d~~VVvY~~~g~--~~A~ra~~~L~~~G~~nV~vL 189 (269)
+.+++...+.+. +++..|++.++... ..-..+.-.++..|+++|.+.
T Consensus 70 ~~~~L~~~l~~~--~~~~~v~i~aD~~~~~~~vv~v~d~~~~~G~~~v~l~ 118 (121)
T TIGR02804 70 SLEELEAEIAQL--NKDQKVTLKSDKEAKFQDFVTITDMLKAKEHENVQIV 118 (121)
T ss_pred CHHHHHHHHHhh--CCCCeEEEEeCCCCCHhHHHHHHHHHHHcCCCeEEEE
Confidence 345667777765 56777888877643 234567778999999998764
No 101
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=24.49 E-value=2e+02 Score=25.96 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=33.4
Q ss_pred HHHHHHHHHHcCC---CCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcH
Q 024280 142 EEAFAAAVSALGL---ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (269)
Q Consensus 142 ~~~f~~~l~~lGI---~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~ 193 (269)
..-|...+++.|+ -++..++|... |.. +..+.+.|..+|.++|.+++=..
T Consensus 107 ~~G~~~~l~~~~~~~~~~~k~vlvlGa-GGa-arai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 107 WDGIAGALANIGKFEPLAGFRGLVIGA-GGT-SRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred HHHHHHHHHhhCCccccCCceEEEEcC-cHH-HHHHHHHHHHcCCCeEEEEeCCH
Confidence 4457777777663 24567777754 432 44456778899999999987543
No 102
>COG4681 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.35 E-value=1.1e+02 Score=25.78 Aligned_cols=47 Identities=32% Similarity=0.597 Sum_probs=33.1
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHH---HHcCCCc--EEEccC
Q 024280 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMF---RVFGHDR--VWVLDG 191 (269)
Q Consensus 138 ~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L---~~~G~~n--V~vLdG 191 (269)
.+|+...+.+.+. ....|.+|.-++. |+|+||.- +..+|.| |+.|+-
T Consensus 85 G~Pde~Ri~kac~-----q~~~val~ay~~r--a~rvWw~q~~~k~a~~~NlsV~~l~~ 136 (181)
T COG4681 85 GLPDERRIKKACT-----QAAQVALFAYNSR--AARVWWQQVQSKVAQFANLSVWYLDD 136 (181)
T ss_pred CCccHHHHHHHHh-----hhhheeeeeecch--HHHHHHHHHHHHHHhhccceEEecCh
Confidence 4677888887774 4567888876554 89999964 5677876 455554
No 103
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=24.26 E-value=1.9e+02 Score=25.84 Aligned_cols=35 Identities=17% Similarity=0.312 Sum_probs=23.4
Q ss_pred CCCCcEEEeCCCChHHHHHHH----HHHHHcCCCcEEEc
Q 024280 155 ENKDGLVVYDGKGIFSAARVW----WMFRVFGHDRVWVL 189 (269)
Q Consensus 155 ~~d~~VVvY~~~g~~~A~ra~----~~L~~~G~~nV~vL 189 (269)
+++..+|+.|.+....+..++ .+|+..||++|++-
T Consensus 135 ~k~e~~vlmgHGt~h~s~~~YacLd~~~~~~~f~~v~v~ 173 (265)
T COG4822 135 NKDEILVLMGHGTDHHSNAAYACLDHVLDEYGFDNVFVA 173 (265)
T ss_pred CcCeEEEEEecCCCccHHHHHHHHHHHHHhcCCCceEEE
Confidence 367778899986444333332 36788899998764
No 104
>PF07152 YaeQ: YaeQ protein; InterPro: IPR009822 This family consists of several hypothetical bacterial proteins of around 180 residues in length, which are often known as YaeQ. YaeQ is homologous to RfaH, a specialised transcription elongation protein. YaeQ is known to compensate for loss of RfaH function [].; PDB: 3C0U_B 2OT9_A 2G3W_B.
Probab=23.74 E-value=1.7e+02 Score=25.04 Aligned_cols=45 Identities=31% Similarity=0.481 Sum_probs=28.5
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHH---HHcCCCcEEEcc
Q 024280 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMF---RVFGHDRVWVLD 190 (269)
Q Consensus 138 ~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L---~~~G~~nV~vLd 190 (269)
..|+.+.+.+..++. +.|+||+- +. ++..||.- +...++|+.++.
T Consensus 85 G~Pd~kRi~kA~~~A-----~~V~vy~y-~~--~~~~Ww~~~~~~l~r~~Nl~V~~ 132 (174)
T PF07152_consen 85 GQPDEKRIKKASGRA-----DQVVVYTY-GR--AADVWWQQNKGKLSRLKNLSVFQ 132 (174)
T ss_dssp S---HHHHHHHHHHE-----EEEEEEE--CH--HHHHHHHHHHHHHTT-TTEEEEE
T ss_pred CCCCHHHHHHHhccC-----CeEEEEEc-Cc--HHHHHHHHhHHHHhCCCCcEEEE
Confidence 367888999988764 56999987 43 67788865 345678877654
No 105
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=23.72 E-value=1.3e+02 Score=24.05 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=31.3
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccC
Q 024280 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDG 191 (269)
Q Consensus 138 ~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdG 191 (269)
.-|.++-|...+..+|++.+..++ ..++ .. -....+..|.+.|++-+|
T Consensus 100 ~KP~~~~~~~~~~~~~~~~~e~i~-IGDs-~~----Di~~A~~~Gi~~v~i~~~ 147 (147)
T TIGR01656 100 RKPKPGLILEALKRLGVDASRSLV-VGDR-LR----DLQAARNAGLAAVLLVDG 147 (147)
T ss_pred CCCCHHHHHHHHHHcCCChHHEEE-EcCC-HH----HHHHHHHCCCCEEEecCC
Confidence 367889999999999997766333 3333 21 123356789987766544
No 106
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=23.59 E-value=86 Score=29.16 Aligned_cols=26 Identities=8% Similarity=0.138 Sum_probs=22.1
Q ss_pred ccccCHHHHHHHhhCCCcEEEccCCC
Q 024280 242 HLIWTLEQVKRNIEEGTYQLVDARSK 267 (269)
Q Consensus 242 ~~~~~~~~v~~~l~~~~~~iiDaRs~ 267 (269)
...+...++.+.+.+++.++||+|..
T Consensus 112 G~yl~p~~wn~~l~D~~~vviDtRN~ 137 (308)
T COG1054 112 GTYLSPKDWNELLSDPDVVVIDTRND 137 (308)
T ss_pred cCccCHHHHHHHhcCCCeEEEEcCcc
Confidence 34477799999999999999999964
No 107
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=23.56 E-value=1.9e+02 Score=22.96 Aligned_cols=41 Identities=17% Similarity=0.192 Sum_probs=29.7
Q ss_pred CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHh
Q 024280 156 NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRA 198 (269)
Q Consensus 156 ~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~ 198 (269)
++.+++|...+|. +..+...|...|.++|.+++--.....+
T Consensus 11 ~~~~vlviGaGg~--ar~v~~~L~~~g~~~i~i~nRt~~ra~~ 51 (135)
T PF01488_consen 11 KGKRVLVIGAGGA--ARAVAAALAALGAKEITIVNRTPERAEA 51 (135)
T ss_dssp TTSEEEEESSSHH--HHHHHHHHHHTTSSEEEEEESSHHHHHH
T ss_pred CCCEEEEECCHHH--HHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 4677888865433 5556778888899999999987765443
No 108
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=23.49 E-value=44 Score=33.11 Aligned_cols=15 Identities=27% Similarity=0.406 Sum_probs=10.9
Q ss_pred HhhHhhCCCCCCeec
Q 024280 109 FQEYQVAHIPGALFF 123 (269)
Q Consensus 109 ~~ey~~gHIPGAi~i 123 (269)
--+|+++|||-..+-
T Consensus 70 LlefA~~~IPk~~h~ 84 (501)
T KOG1386|consen 70 LLEFAKEHIPKEKHK 84 (501)
T ss_pred HHHHHHhhCCHhhcC
Confidence 457788888876654
No 109
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=22.80 E-value=2e+02 Score=23.94 Aligned_cols=19 Identities=16% Similarity=0.029 Sum_probs=14.3
Q ss_pred CCCCcEEEeCCCChHHHHH
Q 024280 155 ENKDGLVVYDGKGIFSAAR 173 (269)
Q Consensus 155 ~~d~~VVvY~~~g~~~A~r 173 (269)
.++.+|+|.|..|...++-
T Consensus 96 ~~g~~V~VHC~aGigRSgt 114 (166)
T PTZ00242 96 TPPETIAVHCVAGLGRAPI 114 (166)
T ss_pred cCCCeEEEECCCCCCHHHH
Confidence 5688999999987655443
No 110
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=22.70 E-value=2.1e+02 Score=26.10 Aligned_cols=49 Identities=10% Similarity=0.129 Sum_probs=32.5
Q ss_pred HHHHHHHHHHcCCC-CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCc
Q 024280 142 EEAFAAAVSALGLE-NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 192 (269)
Q Consensus 142 ~~~f~~~l~~lGI~-~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG 192 (269)
..-|.+.+++.|++ ++++++|... |+. +..+++.|...|.+++.+++=-
T Consensus 108 ~~Gf~~~l~~~~~~~~~k~vlvlGa-GGa-arAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 108 GTGHIRAIKESGFDIKGKTMVLLGA-GGA-STAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECC-cHH-HHHHHHHHHHCCCCEEEEEeCC
Confidence 34577777777775 3456766654 442 3335677888999999988753
No 111
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.55 E-value=2.5e+02 Score=23.18 Aligned_cols=53 Identities=15% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEeCCCC---hHHHHHHHHHHHHcCCCcEEEccCcH
Q 024280 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKG---IFSAARVWWMFRVFGHDRVWVLDGGL 193 (269)
Q Consensus 137 ~~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g---~~~A~ra~~~L~~~G~~nV~vLdGG~ 193 (269)
+.+.+++++.... +..+-.+|+.|.-. ......+...|+..|.+++.++-||.
T Consensus 47 g~~~tp~e~v~aA----~~~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 47 GLFQTPEEAVRAA----VEEDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred CCcCCHHHHHHHH----HhcCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 4455555554433 45677788887632 22356677889999999999888885
No 112
>TIGR00762 DegV EDD domain protein, DegV family. This family of proteins is related to DegV of Bacillus subtilis and includes paralogous sets in several species (B. subtilis, Deinococcus radiodurans, Mycoplasma pneumoniae) that are closer in percent identity to each than to most homologs from other species. This suggests both recent paralogy and diversity of function. DegV itself is encoded immediately downstream of DegU, a transcriptional regulator of degradation, but is itself uncharacterized. Crystallography suggested a lipid-binding site, while comparison of the crystal structure to dihydroxyacetone kinase and to a mannose transporter EIIA domain suggests a conserved domain, EDD, with phosphotransferase activity.
Probab=22.48 E-value=2.1e+02 Score=25.66 Aligned_cols=56 Identities=18% Similarity=0.058 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHH--HHcCCCcEEEccCcH
Q 024280 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMF--RVFGHDRVWVLDGGL 193 (269)
Q Consensus 137 ~~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L--~~~G~~nV~vLdGG~ 193 (269)
.-.|+..+|.+.+.++--. .+.||+.+=+...+...-...+ +.+.-.+|+++|-..
T Consensus 59 TS~ps~~~~~~~~~~l~~~-~~~vi~i~iSs~lSgty~~a~~aa~~~~~~~i~ViDS~~ 116 (275)
T TIGR00762 59 TSQPSPGEFLELYEKLLEE-GDEVLSIHLSSGLSGTYQSARQAAEMVDEAKVTVIDSKS 116 (275)
T ss_pred cCCCCHHHHHHHHHHHHhC-CCeEEEEEcCCchhHHHHHHHHHHhhCCCCCEEEECChH
Confidence 4578899999999877333 3467766654433333222222 233323799999764
No 113
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=22.05 E-value=1.7e+02 Score=24.61 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=33.8
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcH
Q 024280 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (269)
Q Consensus 137 ~~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~ 193 (269)
..=|.++-|+..+..+|+++++ +++.+++-.. ...-.+.+|.+.|++-.++.
T Consensus 152 ~~KP~~~~f~~~~~~~g~~p~~-~l~VgD~~~~----di~gA~~~G~~~vwi~~~~~ 203 (229)
T COG1011 152 VAKPDPEIFEYALEKLGVPPEE-ALFVGDSLEN----DILGARALGMKTVWINRGGK 203 (229)
T ss_pred cCCCCcHHHHHHHHHcCCCcce-EEEECCChhh----hhHHHHhcCcEEEEECCCCC
Confidence 3457789999999999999654 4555543211 11224568998887766653
No 114
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=21.69 E-value=2.2e+02 Score=25.59 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEc
Q 024280 139 LPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVL 189 (269)
Q Consensus 139 lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vL 189 (269)
=|+.+.|++.++.+||+.-...+++|++..- ...-+.+|..-|.++
T Consensus 160 KP~~~afE~a~k~agi~~p~~t~FfDDS~~N-----I~~ak~vGl~tvlv~ 205 (244)
T KOG3109|consen 160 KPSEEAFEKAMKVAGIDSPRNTYFFDDSERN-----IQTAKEVGLKTVLVG 205 (244)
T ss_pred cCCHHHHHHHHHHhCCCCcCceEEEcCchhh-----HHHHHhccceeEEEE
Confidence 3778899999999999977778888876331 122345788766544
No 115
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=21.68 E-value=3.1e+02 Score=22.82 Aligned_cols=48 Identities=23% Similarity=0.282 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCC-CCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCc
Q 024280 143 EAFAAAVSALGLE-NKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 192 (269)
Q Consensus 143 ~~f~~~l~~lGI~-~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG 192 (269)
+...+.+++.|++ ++.+++++...|.. +..+...|...|+ +|.+++-.
T Consensus 13 ~~~~~~l~~~~~~l~~~~vlVlGgtG~i-G~~~a~~l~~~g~-~V~l~~R~ 61 (194)
T cd01078 13 AAAGKALELMGKDLKGKTAVVLGGTGPV-GQRAAVLLAREGA-RVVLVGRD 61 (194)
T ss_pred HHHHHHHHHhCcCCCCCEEEEECCCCHH-HHHHHHHHHHCCC-EEEEEcCC
Confidence 3455666666766 45678888765553 3445566777786 68777544
No 116
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=21.63 E-value=2.9e+02 Score=21.72 Aligned_cols=48 Identities=19% Similarity=0.337 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCC-CCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcH
Q 024280 144 AFAAAVSALGLEN-KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (269)
Q Consensus 144 ~f~~~l~~lGI~~-d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~ 193 (269)
-|...++..|++. +..+++.. .|.. +......|...|..+|.+++-..
T Consensus 5 g~~~a~~~~~~~~~~~~i~iiG-~G~~-g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 5 GFVRALEEAGIELKGKKVLILG-AGGA-ARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred HHHHHHHhhCCCCCCCEEEEEC-CcHH-HHHHHHHHHHCCCCEEEEEcCCH
Confidence 3566677777643 45565554 3543 45556667777766788876543
No 117
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=21.49 E-value=2.2e+02 Score=25.96 Aligned_cols=49 Identities=16% Similarity=0.177 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCC-CCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcH
Q 024280 143 EAFAAAVSALGL-ENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (269)
Q Consensus 143 ~~f~~~l~~lGI-~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~ 193 (269)
.-|...|++.+. .++++++|...+|. +..+.+.|...|..++.++|=..
T Consensus 112 ~Gf~~~L~~~~~~~~~k~vlilGaGGa--arAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 112 SGFGRGMEEGLPNAKLDSVVQVGAGGV--GNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred HHHHHHHHhcCcCcCCCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEcCCH
Confidence 456666665433 23566777754332 44455778889999999998644
No 118
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=21.34 E-value=1.6e+02 Score=29.83 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcH
Q 024280 137 HMLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (269)
Q Consensus 137 ~~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~ 193 (269)
.|+...+++.+++.-+.-..+.++|||-+.-- .+-.++-.|..+||. ++.|-||-
T Consensus 497 ~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk-~~d~lAk~LeK~g~~-~~tlHg~k 551 (673)
T KOG0333|consen 497 EMVSEDEKRKKLIEILESNFDPPIIIFVNTKK-GADALAKILEKAGYK-VTTLHGGK 551 (673)
T ss_pred EEecchHHHHHHHHHHHhCCCCCEEEEEechh-hHHHHHHHHhhccce-EEEeeCCc
Confidence 35566666666665553346778888876532 255677889999985 99999985
No 119
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=21.01 E-value=3.2e+02 Score=25.49 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=40.7
Q ss_pred EEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHHhCCCceecCCCcc---hHHHhhhhHHHHHHhhcC
Q 024280 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGYDVESSASGD---AILKASAASEAIEKVYQG 228 (269)
Q Consensus 160 VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~~~G~pv~~~~~~~---~~~~~~~~~e~~~~~~~~ 228 (269)
|+|..-+|. .+.++..|..+|+.++.++|.+.-.+.+.++..--.. .+ .-.|+.++.+.+.+.++.
T Consensus 2 VLIvGaGGL--Gs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~-~D~~iGk~Ka~aaa~~L~~iNP~ 70 (307)
T cd01486 2 CLLLGAGTL--GCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTF-EDCKGGKPKAEAAAERLKEIFPS 70 (307)
T ss_pred EEEECCCHH--HHHHHHHHHHcCCCeEEEECCCEeccccCCccccccc-chhhcCccHHHHHHHHHHHHCCC
Confidence 444433333 4667788899999999999999877776554321000 11 124566667777766543
No 120
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]. This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
Probab=20.95 E-value=2e+02 Score=26.48 Aligned_cols=41 Identities=20% Similarity=0.172 Sum_probs=31.3
Q ss_pred HHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCC
Q 024280 143 EAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHD 184 (269)
Q Consensus 143 ~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~ 184 (269)
..++..|.++|+.+++.|++++..... ..-+.+.+..+|..
T Consensus 32 ~~la~~L~~~g~~~~~~V~i~~~n~~~-~~~~~~A~~~~G~~ 72 (417)
T PF00501_consen 32 RKLAAALRKLGVKKGDRVAILLPNSIE-FVVAFLACLRAGAI 72 (417)
T ss_dssp HHHHHHHHHTTSSTTSEEEEEESSSHH-HHHHHHHHHHTT-E
T ss_pred HHHhhHHHHhCCCccccccccCCccce-eeeeeccccccccc
Confidence 568888999999999999999887664 45555667777874
No 121
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=20.93 E-value=2.2e+02 Score=27.10 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHHH
Q 024280 138 MLPSEEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWR 197 (269)
Q Consensus 138 ~lp~~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W~ 197 (269)
.-|+.+.|+-++ +.+|+|...+|. .+.+..-|...||.++.++|--.-.-.
T Consensus 28 f~~~~e~l~~l~-------~~kiLviGAGGL--GCElLKnLal~gF~~~~viDmDTId~s 78 (422)
T KOG2015|consen 28 FEPSEENLEFLQ-------DCKILVIGAGGL--GCELLKNLALSGFRQLHVIDMDTIDLS 78 (422)
T ss_pred CCCCHHHHHHHh-------hCcEEEEccCcc--cHHHHHhHHhhccceeEEEeecceecc
Confidence 345566666554 356877766554 567778889999999999886543333
No 122
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=20.93 E-value=1.3e+02 Score=30.49 Aligned_cols=50 Identities=20% Similarity=0.161 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHcCCCCCCcEEEeCC---CChHHHHHHHHHHHHcCCCcEEE
Q 024280 138 MLPSEEAFAAAVSALGLENKDGLVVYDG---KGIFSAARVWWMFRVFGHDRVWV 188 (269)
Q Consensus 138 ~lp~~~~f~~~l~~lGI~~d~~VVvY~~---~g~~~A~ra~~~L~~~G~~nV~v 188 (269)
.|+.-++..+.+.+. |.+..+|+||.+ .|..+++-++..|+.+|.+++.+
T Consensus 51 ~l~~m~~a~~ri~~a-i~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~ 103 (575)
T PRK11070 51 QLSGIEKAVELLYNA-LREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDY 103 (575)
T ss_pred HhhCHHHHHHHHHHH-HHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEE
Confidence 345544544544443 677889999855 36666666778899999866643
No 123
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=20.92 E-value=1.2e+02 Score=23.98 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=20.4
Q ss_pred EEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcHHHH
Q 024280 160 LVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRW 196 (269)
Q Consensus 160 VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~~~W 196 (269)
|++.|.+....|.-+-.+|+.+.-.++.+.-.|+.+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 3555654443455555556555444566666666554
No 124
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=20.62 E-value=1.5e+02 Score=19.61 Aligned_cols=26 Identities=12% Similarity=0.004 Sum_probs=20.1
Q ss_pred cEEEeCCCChHHHHHHHHHHHHcCCC
Q 024280 159 GLVVYDGKGIFSAARVWWMFRVFGHD 184 (269)
Q Consensus 159 ~VVvY~~~g~~~A~ra~~~L~~~G~~ 184 (269)
.|++|...++....++.++|+..|++
T Consensus 1 ~v~l~~~~~c~~c~~~~~~l~~~~i~ 26 (73)
T cd02976 1 EVTVYTKPDCPYCKATKRFLDERGIP 26 (73)
T ss_pred CEEEEeCCCChhHHHHHHHHHHCCCC
Confidence 36788777776677888889888875
No 125
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=20.60 E-value=1.4e+02 Score=20.60 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=21.9
Q ss_pred cEEEeCCCChHHHHHHHHHHHHcCCC
Q 024280 159 GLVVYDGKGIFSAARVWWMFRVFGHD 184 (269)
Q Consensus 159 ~VVvY~~~g~~~A~ra~~~L~~~G~~ 184 (269)
.|++|...++....++..+|+..|.+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi~ 27 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGLP 27 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCCc
Confidence 58899888887788888889999986
No 126
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=20.57 E-value=48 Score=26.20 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=25.6
Q ss_pred EEEeCCCChHHHHHHHHHHHHc----CCCcEEEccCcHHHH
Q 024280 160 LVVYDGKGIFSAARVWWMFRVF----GHDRVWVLDGGLPRW 196 (269)
Q Consensus 160 VVvY~~~g~~~A~ra~~~L~~~----G~~nV~vLdGG~~~W 196 (269)
|++.|.++...+.-+-.+|+.+ +..++.+.-.|+.+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 5667776544466666667666 667788888888765
No 127
>PRK13382 acyl-CoA synthetase; Provisional
Probab=20.45 E-value=2.4e+02 Score=27.39 Aligned_cols=50 Identities=18% Similarity=0.165 Sum_probs=36.8
Q ss_pred HHHHHHHHHHcCCCCCCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCcH
Q 024280 142 EEAFAAAVSALGLENKDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGL 193 (269)
Q Consensus 142 ~~~f~~~l~~lGI~~d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG~ 193 (269)
...++.+|..+|+.+++.|.++|..+.. ...++|.+..+|.. +-.++-++
T Consensus 78 ~~~~A~~L~~~g~~~g~~V~i~~~n~~~-~~~~~lA~~~~G~~-~vpl~~~~ 127 (537)
T PRK13382 78 SDALAAALQALPIGEPRVVGIMCRNHRG-FVEALLAANRIGAD-ILLLNTSF 127 (537)
T ss_pred HHHHHHHHHHcCCCCCCEEEEEecCcHH-HHHHHHHHHHcCcE-EEecCccc
Confidence 3568888999999999999999987665 45566777788874 33445443
No 128
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=20.40 E-value=3.9e+02 Score=22.48 Aligned_cols=52 Identities=23% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCCCCcEEEeCC---CChHHHHHHHHHHHHcCCCcEE---Ecc---CcHHHHHhCCCceecC
Q 024280 154 LENKDGLVVYDG---KGIFSAARVWWMFRVFGHDRVW---VLD---GGLPRWRASGYDVESS 206 (269)
Q Consensus 154 I~~d~~VVvY~~---~g~~~A~ra~~~L~~~G~~nV~---vLd---GG~~~W~~~G~pv~~~ 206 (269)
+.++++|++.|+ +|. +...+...|+..|.+-+. ++| ||-..-.+.|+|+.+-
T Consensus 104 ~~~g~~VlIVDDvitTG~-Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~sL 164 (176)
T PRK13812 104 LDEGEEVVVLEDIATTGQ-SAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEAL 164 (176)
T ss_pred CCCcCEEEEEEEeeCCCH-HHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEEEE
Confidence 457889999987 344 577788899999986322 333 3333334467776653
No 129
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.23 E-value=2.1e+02 Score=25.14 Aligned_cols=56 Identities=23% Similarity=0.350 Sum_probs=36.6
Q ss_pred HHHHHHHHHcCCCCCCcEEEe-CCCChHHH-------------------HHHHHHHHHcCCCcEEEccC-cHHHHHh
Q 024280 143 EAFAAAVSALGLENKDGLVVY-DGKGIFSA-------------------ARVWWMFRVFGHDRVWVLDG-GLPRWRA 198 (269)
Q Consensus 143 ~~f~~~l~~lGI~~d~~VVvY-~~~g~~~A-------------------~ra~~~L~~~G~~nV~vLdG-G~~~W~~ 198 (269)
.-.+.+++.+.+.+.+.|+=. |++|...| ..+...|+.+|++||.+..| |..+|..
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~ 135 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPE 135 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCC
Confidence 346677777888888877644 44444322 22444589999999886655 5666765
No 130
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=20.15 E-value=2.6e+02 Score=25.30 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=31.5
Q ss_pred HHHHHHHHHHcCCCC-CCcEEEeCCCChHHHHHHHHHHHHcCCCcEEEccCc
Q 024280 142 EEAFAAAVSALGLEN-KDGLVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGG 192 (269)
Q Consensus 142 ~~~f~~~l~~lGI~~-d~~VVvY~~~g~~~A~ra~~~L~~~G~~nV~vLdGG 192 (269)
..-|...+++.+++. ++.++|... |+ .+..+.+.|...|.++|.+++-.
T Consensus 110 ~~G~~~~l~~~~~~~~~k~vlI~GA-GG-agrAia~~La~~G~~~V~I~~R~ 159 (289)
T PRK12548 110 GLGFVRNLREHGVDVKGKKLTVIGA-GG-AATAIQVQCALDGAKEITIFNIK 159 (289)
T ss_pred HHHHHHHHHhcCCCcCCCEEEEECC-cH-HHHHHHHHHHHCCCCEEEEEeCC
Confidence 345777777665543 455666654 43 24445677888999989988653
No 131
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=20.11 E-value=1.3e+02 Score=21.17 Aligned_cols=25 Identities=20% Similarity=0.126 Sum_probs=20.4
Q ss_pred EEEeCCCChHHHHHHHHHHHHcCCC
Q 024280 160 LVVYDGKGIFSAARVWWMFRVFGHD 184 (269)
Q Consensus 160 VVvY~~~g~~~A~ra~~~L~~~G~~ 184 (269)
+.+|....+..+.++.|.|...|.+
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi~ 26 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELELD 26 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCCc
Confidence 5688876666688999999999985
No 132
>PRK11024 colicin uptake protein TolR; Provisional
Probab=20.03 E-value=4e+02 Score=21.31 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=31.3
Q ss_pred HHHHHHHHHHc-CCCCCCcEEEeCCCCh--HHHHHHHHHHHHcCCCcEEEc
Q 024280 142 EEAFAAAVSAL-GLENKDGLVVYDGKGI--FSAARVWWMFRVFGHDRVWVL 189 (269)
Q Consensus 142 ~~~f~~~l~~l-GI~~d~~VVvY~~~g~--~~A~ra~~~L~~~G~~nV~vL 189 (269)
.+++.+.+..+ .-+++..|++..+... .....+.-.++..|+.+|.+.
T Consensus 87 ~~~L~~~l~~~~~~~~~~~V~i~aD~~~~~~~vv~vmd~~k~aG~~~v~l~ 137 (141)
T PRK11024 87 EEQVVAEAKSRFKANPKTVFLIGGAKDVPYDEIIKALNLLHSAGVKSVGLM 137 (141)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 44555544443 3356777888877533 335567778999999998764
Done!