Your job contains 1 sequence.
>024281
MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGS
GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRPRSYSRSPSPRRG
RSRSRSYSRGRSDSRSRSPVKRDRSVERFERRTRSPRDSRSPKRRRNSPPSSKGRKRSPT
PDERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENGRSRS
RSLSPVPRDDRSPIDDDDNHGDPRGSESN
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 024281
(269 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2049766 - symbol:RS2Z33 "arginine/serine-rich ... 457 1.4e-48 2
TAIR|locus:2083936 - symbol:RS2Z32 "arginine/serine-rich ... 443 3.7e-48 2
UNIPROTKB|C9JAB2 - symbol:SRSF7 "Serine/arginine-rich-spl... 150 1.5e-14 2
UNIPROTKB|D4A720 - symbol:Sfrs7 "Protein Sfrs7" species:1... 150 1.5e-14 2
UNIPROTKB|Q3T106 - symbol:SRSF7 "Serine/arginine-rich spl... 150 2.4e-14 2
UNIPROTKB|Q16629 - symbol:SRSF7 "Serine/arginine-rich spl... 150 2.5e-14 2
UNIPROTKB|J9P2I8 - symbol:SRSF7 "Uncharacterized protein"... 150 2.5e-14 2
UNIPROTKB|Q5ZMI0 - symbol:SRSF7 "Uncharacterized protein"... 149 3.9e-14 2
MGI|MGI:1926232 - symbol:Srsf7 "serine/arginine-rich spli... 150 5.2e-14 2
ZFIN|ZDB-GENE-040426-1798 - symbol:zgc:77155 "zgc:77155" ... 130 6.7e-14 2
UNIPROTKB|F1S4R5 - symbol:SRSF7 "Uncharacterized protein"... 149 1.2e-13 2
ZFIN|ZDB-GENE-050913-95 - symbol:srsf7 "serine/arginine-r... 142 8.6e-13 2
UNIPROTKB|F1LZA3 - symbol:F1LZA3 "Uncharacterized protein... 135 2.3e-12 2
FB|FBgn0028554 - symbol:x16 species:7227 "Drosophila mela... 129 6.5e-12 2
UNIPROTKB|E1BVX5 - symbol:LOC100859609 "Uncharacterized p... 128 7.3e-12 2
DICTYBASE|DDB_G0284245 - symbol:DDB_G0284245 "CCHC-type z... 133 6.3e-11 2
DICTYBASE|DDB_G0291966 - symbol:DDB_G0291966 "CCHC-type z... 128 7.3e-11 2
RGD|1307425 - symbol:Srsf7 "serine/arginine-rich splicing... 149 1.2e-10 1
ZFIN|ZDB-GENE-030131-591 - symbol:srsf4 "serine/arginine-... 128 2.2e-10 2
WB|WBGene00004699 - symbol:rsp-2 species:6239 "Caenorhabd... 116 3.5e-09 2
UNIPROTKB|Q23120 - symbol:rsp-2 "Probable splicing factor... 116 3.5e-09 2
UNIPROTKB|B4E241 - symbol:SFRS3 "Splicing factor, arginin... 111 3.6e-09 2
UNIPROTKB|Q6K9C3 - symbol:RSZ23 "Serine/arginine-rich spl... 105 4.8e-09 2
ZFIN|ZDB-GENE-041219-1 - symbol:srsf6b "serine/arginine-r... 118 6.5e-09 2
WB|WBGene00004698 - symbol:rsp-1 species:6239 "Caenorhabd... 109 8.1e-09 2
UNIPROTKB|Q23121 - symbol:rsp-1 "Probable splicing factor... 109 8.1e-09 2
UNIPROTKB|F1M8R2 - symbol:F1M8R2 "Uncharacterized protein... 118 1.1e-08 2
UNIPROTKB|B4DP17 - symbol:CNBP "cDNA FLJ61146, highly sim... 129 1.6e-08 1
UNIPROTKB|E2RPD7 - symbol:CNBP "Uncharacterized protein" ... 129 1.6e-08 1
UNIPROTKB|F8WFK2 - symbol:Cnbp "Cellular nucleic acid-bin... 129 1.6e-08 1
UNIPROTKB|F1N8C2 - symbol:CNBP "Cellular nucleic acid-bin... 129 1.6e-08 1
UNIPROTKB|Q3T0Q6 - symbol:CNBP "Cellular nucleic acid-bin... 129 1.6e-08 1
UNIPROTKB|P62633 - symbol:CNBP "Cellular nucleic acid-bin... 129 1.6e-08 1
UNIPROTKB|Q4R501 - symbol:Q4R501 "Brain cDNA, clone: QnpA... 129 1.6e-08 1
UNIPROTKB|Q5R5R5 - symbol:CNBP "Cellular nucleic acid-bin... 129 1.6e-08 1
MGI|MGI:88431 - symbol:Cnbp "cellular nucleic acid bindin... 129 1.6e-08 1
RGD|621807 - symbol:Cnbp "CCHC-type zinc finger, nucleic ... 129 1.6e-08 1
UNIPROTKB|P62634 - symbol:Cnbp "Cellular nucleic acid-bin... 129 1.6e-08 1
UNIPROTKB|F1NI84 - symbol:CNBP "Cellular nucleic acid-bin... 129 1.6e-08 1
UNIPROTKB|O42395 - symbol:CNBP "Cellular nucleic acid-bin... 129 1.6e-08 1
UNIPROTKB|E1C8Y9 - symbol:SRSF3 "Uncharacterized protein"... 111 1.7e-08 2
UNIPROTKB|Q3SZR8 - symbol:SRSF3 "Serine/arginine-rich spl... 111 1.7e-08 2
UNIPROTKB|F2Z4N6 - symbol:SRSF3 "Uncharacterized protein"... 111 1.7e-08 2
UNIPROTKB|P84103 - symbol:SRSF3 "Serine/arginine-rich spl... 111 1.7e-08 2
MGI|MGI:98285 - symbol:Srsf3 "serine/arginine-rich splici... 111 1.7e-08 2
RGD|1309233 - symbol:Srsf3 "serine/arginine-rich splicing... 111 1.7e-08 2
ZFIN|ZDB-GENE-030131-7336 - symbol:srsf5a "serine/arginin... 118 1.9e-08 2
ZFIN|ZDB-GENE-030131-7782 - symbol:cnbpb "CCHC-type zinc ... 130 2.4e-08 1
ASPGD|ASPL0000028407 - symbol:AN5111 species:162425 "Emer... 126 3.3e-08 1
ZFIN|ZDB-GENE-040426-2824 - symbol:srsf6a "serine/arginin... 115 5.9e-08 2
ZFIN|ZDB-GENE-030131-5045 - symbol:cnbpa "CCHC-type zinc ... 123 6.8e-08 1
WB|WBGene00019537 - symbol:K08D12.3 species:6239 "Caenorh... 123 6.8e-08 1
UNIPROTKB|A7MB38 - symbol:SFRS4 "SFRS4 protein" species:9... 120 9.1e-08 2
UNIPROTKB|F1PTE0 - symbol:SRSF6 "Uncharacterized protein"... 118 9.9e-08 2
TAIR|locus:2133249 - symbol:SR34b "Serine/Arginine-Rich P... 111 1.3e-07 2
UNIPROTKB|F6T1J1 - symbol:SRSF4 "Serine/arginine-rich-spl... 120 1.4e-07 1
UNIPROTKB|I3LAE9 - symbol:LOC100523801 "Uncharacterized p... 111 1.4e-07 2
UNIPROTKB|F1S4B2 - symbol:SRSF5 "Uncharacterized protein"... 117 1.6e-07 2
UNIPROTKB|E1BRL9 - symbol:LOC100859609 "Uncharacterized p... 112 1.8e-07 2
UNIPROTKB|J9NRQ2 - symbol:ZCCHC13 "Uncharacterized protei... 119 1.8e-07 1
DICTYBASE|DDB_G0293328 - symbol:DDB_G0293328 "Cellular nu... 119 1.8e-07 1
TAIR|locus:2046638 - symbol:RSZ22a "RS-containing zinc fi... 95 1.9e-07 2
UNIPROTKB|J9PA38 - symbol:SRSF6 "Uncharacterized protein"... 118 2.3e-07 1
UNIPROTKB|F1MXY9 - symbol:SRSF6 "Serine/arginine-rich-spl... 118 2.6e-07 2
UNIPROTKB|Q3B7L6 - symbol:SRSF6 "Serine/arginine-rich spl... 118 2.6e-07 2
POMBASE|SPBC11C11.08 - symbol:srp1 "SR family protein, hu... 88 2.6e-07 2
ZFIN|ZDB-GENE-040426-1467 - symbol:srsf1b "serine/arginin... 112 2.8e-07 2
UNIPROTKB|Q06A99 - symbol:SRSF4 "SFRS4" species:9823 "Sus... 120 2.9e-07 2
UNIPROTKB|Q5ZLF9 - symbol:SRSF5 "Uncharacterized protein"... 117 2.9e-07 1
UNIPROTKB|B4DJK0 - symbol:SRSF5 "Serine/arginine-rich-spl... 117 2.9e-07 1
UNIPROTKB|B4DUA4 - symbol:SRSF5 "cDNA FLJ57437, highly si... 117 2.9e-07 1
UNIPROTKB|G3V5K8 - symbol:SRSF5 "Serine/arginine-rich-spl... 117 2.9e-07 1
UNIPROTKB|Q13247 - symbol:SRSF6 "Serine/arginine-rich spl... 118 3.2e-07 2
TAIR|locus:2124799 - symbol:RSZ22 "RS-containing zinc fin... 104 3.3e-07 2
MGI|MGI:98287 - symbol:Srsf5 "serine/arginine-rich splici... 117 3.5e-07 2
RGD|3664 - symbol:Srsf5 "serine/arginine-rich splicing fa... 117 3.5e-07 2
UNIPROTKB|Q09167 - symbol:Srsf5 "Serine/arginine-rich spl... 117 3.5e-07 2
RGD|1561347 - symbol:Srsf4 "serine/arginine-rich splicing... 120 3.7e-07 2
MGI|MGI:1890577 - symbol:Srsf4 "serine/arginine-rich spli... 120 3.7e-07 2
UNIPROTKB|Q08170 - symbol:SRSF4 "Serine/arginine-rich spl... 120 3.8e-07 2
UNIPROTKB|Q13243 - symbol:SRSF5 "Serine/arginine-rich spl... 117 4.7e-07 2
UNIPROTKB|A6H7B7 - symbol:SFRS5 "SFRS5 protein" species:9... 117 4.7e-07 2
UNIPROTKB|E2R8E5 - symbol:SRSF5 "Uncharacterized protein"... 117 4.7e-07 2
UNIPROTKB|Q06AA0 - symbol:SRSF6 "Uncharacterized protein"... 118 5.2e-07 2
TAIR|locus:2195346 - symbol:SR30 "Serine/Arginine-Rich Pr... 112 5.4e-07 2
UNIPROTKB|F1RY92 - symbol:SRSF3 "Uncharacterized protein"... 104 5.6e-07 2
WB|WBGene00004702 - symbol:rsp-5 species:6239 "Caenorhabd... 103 5.8e-07 2
UNIPROTKB|Q10021 - symbol:rsp-5 "Probable splicing factor... 103 5.8e-07 2
UNIPROTKB|Q5R7H2 - symbol:SRSF1 "Serine/arginine-rich spl... 113 6.0e-07 2
UNIPROTKB|G4N4A8 - symbol:MGG_05948 "Zinc knuckle domain-... 122 6.0e-07 1
SGD|S000005199 - symbol:GIS2 "Translational activator for... 114 6.1e-07 1
ZFIN|ZDB-GENE-040718-354 - symbol:srsf5b "serine/arginine... 113 7.1e-07 2
UNIPROTKB|Q0VCY7 - symbol:SRSF1 "Serine/arginine-rich spl... 113 7.6e-07 2
UNIPROTKB|Q07955 - symbol:SRSF1 "Serine/arginine-rich spl... 113 7.6e-07 2
UNIPROTKB|Q3YLA6 - symbol:SRSF1 "Serine/arginine-rich spl... 113 7.6e-07 2
MGI|MGI:98283 - symbol:Srsf1 "serine/arginine-rich splici... 113 7.6e-07 2
RGD|1587490 - symbol:Srsf1 "serine/arginine-rich splicing... 113 7.6e-07 2
UNIPROTKB|E2RJL3 - symbol:SRSF1 "Uncharacterized protein"... 113 8.4e-07 2
UNIPROTKB|J3KTL2 - symbol:SRSF1 "Serine/arginine-rich-spl... 113 8.4e-07 2
TAIR|locus:2199837 - symbol:RSZ21 "RS-containing zinc fin... 93 8.7e-07 2
WARNING: Descriptions of 120 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2049766 [details] [associations]
symbol:RS2Z33 "arginine/serine-rich zinc
knuckle-containing protein 33" species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0000245 "spliceosomal
complex assembly" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0008380
"RNA splicing" evidence=NAS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002685 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
EMBL:AC005896 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
UniGene:At.48558 UniGene:At.71153 GO:GO:0000245 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 PIR:F84791 EMBL:AJ293801
EMBL:AY072315 EMBL:AY114563 EMBL:AK176551 EMBL:BX842463
EMBL:BX842467 EMBL:AK176666 IPI:IPI00543174 RefSeq:NP_850280.1
RefSeq:NP_973619.1 RefSeq:NP_973620.1 ProteinModelPortal:Q8VYA5
SMR:Q8VYA5 IntAct:Q8VYA5 STRING:Q8VYA5 PRIDE:Q8VYA5 ProMEX:Q8VYA5
EnsemblPlants:AT2G37340.1 GeneID:818311 KEGG:ath:AT2G37340
TAIR:At2g37340 InParanoid:Q8VYA5 OMA:NNGDDPS PhylomeDB:Q8VYA5
ProtClustDB:CLSN2680093 Genevestigator:Q8VYA5 Uniprot:Q8VYA5
Length = 290
Score = 457 (165.9 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 80/105 (76%), Positives = 89/105 (84%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 60
MKRD+AFVEF DPRDADDAR+ L+GRD DGSRI VEF+ SR++ RGPPPG+
Sbjct: 42 MKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRG---SRDFDSRGPPPGA 98
Query: 61 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
GRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIERNC+NSPKKL
Sbjct: 99 GRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKL 143
Score = 67 (28.6 bits), Expect = 1.4e-48, Sum P(2) = 1.4e-48
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 184 RSPQDQRSPSPRDR-RQANGSEYSGSPRGKSRSPV-DDADGPEDRNYRSPP 232
RSP +R S +R R + S SPR + RSPV DD P+ + PP
Sbjct: 179 RSPVRRRERSVEERSRSPKRMDDSLSPRARDRSPVLDDEGSPKIIDGSPPP 229
Score = 66 (28.3 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 20/61 (32%), Positives = 30/61 (49%)
Query: 182 DERSPQ--D-QRSPSPRDRRQANGSEYSGSPRGKSR----SPVDDADGPEDRNYRSPPEE 234
DE SP+ D PSP+ +++ GSP+ R SPV A G + RSP ++
Sbjct: 216 DEGSPKIIDGSPPPSPKLQKEVGSDRDGGSPQDNGRNSVVSPVVGAGGDSSKEDRSPVDD 275
Query: 235 N 235
+
Sbjct: 276 D 276
Score = 60 (26.2 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 231
RSP RS SPR RR + S +SRSPV + + RSP
Sbjct: 151 RSPV--RSRSPRRRRSPSRSLSRSRSYSRSRSPVRRRERSVEERSRSP 196
Score = 54 (24.1 bits), Expect = 3.3e-47, Sum P(2) = 3.3e-47
Identities = 22/58 (37%), Positives = 30/58 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSP--------RGKSRSP--VDDADGPEDRNYRSP 231
RSP+ +RSPS R ++ S SP +SRSP +DD+ P R+ RSP
Sbjct: 157 RSPRRRRSPS-RSLSRSRSYSRSRSPVRRRERSVEERSRSPKRMDDSLSPRARD-RSP 212
Score = 43 (20.2 bits), Expect = 4.7e-46, Sum P(2) = 4.7e-46
Identities = 28/99 (28%), Positives = 34/99 (34%)
Query: 184 RSPQ---DQRSPSPRDRRQANGSEYSGSPR----GKSRSPVDDADGPEDRNYRSPPEENG 236
RSP+ D SP RDR E GSP+ SP + DR+ SP ++NG
Sbjct: 194 RSPKRMDDSLSPRARDRSPVLDDE--GSPKIIDGSPPPSPKLQKEVGSDRDGGSP-QDNG 250
Query: 237 XXXXXXXXXXXXXXXXXXXXXX-------NHGDPRGSES 268
N PRGSES
Sbjct: 251 RNSVVSPVVGAGGDSSKEDRSPVDDDYEPNRTSPRGSES 289
>TAIR|locus:2083936 [details] [associations]
symbol:RS2Z32 "arginine/serine-rich zinc
knuckle-containing protein 32" species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA;TAS] [GO:0008380 "RNA
splicing" evidence=NAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA] [GO:0035196 "production
of miRNAs involved in gene silencing by miRNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0046872
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL132966
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0000398 HSSP:P52298
HOGENOM:HOG000276234 KO:K12896 EMBL:AY095996 EMBL:BT001034
EMBL:AK316697 IPI:IPI00525747 PIR:F84791 PIR:T45890
RefSeq:NP_190918.3 RefSeq:NP_851015.1 UniGene:At.26777
ProteinModelPortal:Q9FYB7 SMR:Q9FYB7 STRING:Q9FYB7 PRIDE:Q9FYB7
EnsemblPlants:AT3G53500.2 GeneID:824518 KEGG:ath:AT3G53500
TAIR:At3g53500 InParanoid:Q9FYB7 OMA:GSPKENG PhylomeDB:Q9FYB7
ProtClustDB:CLSN2680397 Genevestigator:Q9FYB7 Uniprot:Q9FYB7
Length = 284
Score = 443 (161.0 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 79/102 (77%), Positives = 84/102 (82%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 60
MKRD+AFVEFSDPRDADDARY L+GRD DGSRI VE SR+ RGPPPGS
Sbjct: 42 MKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVE---ASRGAPRGSRDNGSRGPPPGS 98
Query: 61 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 102
GRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIERNC+NSP
Sbjct: 99 GRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 77 (32.2 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 231
RSP+ +RSPS R R + G YS +SRSPV EDR+ RSP
Sbjct: 159 RSPRRRRSPS-RSRSYSRGRSYS-----RSRSPVRREKSVEDRS-RSP 199
Score = 67 (28.6 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 184 RSPQDQRSPSPRDR-RQANGSEYSGSPRGK--SRSP---VDDADGPEDRNYRSPPEENG 236
RSP +R S DR R E S SP+G+ S SP V DA +Y P+ENG
Sbjct: 183 RSPV-RREKSVEDRSRSPKAMERSVSPKGRDQSLSPDRKVIDASPKRGSDYDGSPKENG 240
Score = 63 (27.2 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 228
+ SPSP+ RQ G YS SP KSRSP R+Y
Sbjct: 137 KNSPSPKKARQ--GGSYSRSPV-KSRSPRRRRSPSRSRSY 173
Score = 46 (21.3 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
Identities = 21/59 (35%), Positives = 28/59 (47%)
Query: 187 QDQR-SPSPR--DRRQANGSEYSGSPR--GKSR---SP-VDDADGPEDRNY--RSPPEE 234
+DQ SP + D GS+Y GSP+ G R SP V + P N RSP ++
Sbjct: 211 RDQSLSPDRKVIDASPKRGSDYDGSPKENGNGRNSASPIVGGGESPVGLNGQDRSPIDD 269
Score = 41 (19.5 bits), Expect = 2.3e-44, Sum P(2) = 2.3e-44
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 202 GSEYSGSPRGKSRSPVDDA---DGPEDRNYRSP 231
G E G+ RSP+DD P + SP
Sbjct: 252 GGESPVGLNGQDRSPIDDEAELSRPSPKGSESP 284
>UNIPROTKB|C9JAB2 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich-splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AC074366
HOGENOM:HOG000276234 HGNC:HGNC:10789 IPI:IPI00916448
ProteinModelPortal:C9JAB2 SMR:C9JAB2 STRING:C9JAB2 PRIDE:C9JAB2
Ensembl:ENST00000409276 ArrayExpress:C9JAB2 Bgee:C9JAB2
Uniprot:C9JAB2
Length = 235
Score = 150 (57.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 35/89 (39%), Positives = 46/89 (51%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+DA L+G+ + GSR+ VE + R R P + RC+
Sbjct: 49 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCY 107
Query: 65 NCGIDGHWARDCKAGDWKNKCYRCGERGH 93
CG GH+A DC + + R R H
Sbjct: 108 ECGEKGHYAYDCHRYSRRRRS-RSRSRSH 135
Score = 49 (22.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
S + RSPS R R ++ S R KSRSP
Sbjct: 183 SIKGSRSPS-RSRSRSRSISRPRSSRSKSRSP 213
Score = 47 (21.6 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
S RSPSP+ R SGSPR +S SP
Sbjct: 206 SRSKSRSPSPKRSRSP-----SGSPR-RSASP 231
Score = 45 (20.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 185 SPQDQRSPSPRDRRQAN-GSEYSGSPRGKSRSP 216
SP+ RS S R R A+ SGS +G SRSP
Sbjct: 159 SPRRSRSISLRRSRSASLRRSRSGSIKG-SRSP 190
Score = 45 (20.9 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 15/34 (44%), Positives = 16/34 (47%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGK-SRSP 216
RSP RS S R + S SP K SRSP
Sbjct: 188 RSPSRSRSRSRSISRPRSSRSKSRSPSPKRSRSP 221
Score = 41 (19.5 bits), Expect = 1.0e-13, Sum P(2) = 1.0e-13
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 184 RSPQDQRSPSPRDRRQANGS-EYSGSP-RGKSRS 215
RS +RS S RR +GS + S SP R +SRS
Sbjct: 164 RSISLRRSRSASLRRSRSGSIKGSRSPSRSRSRS 197
>UNIPROTKB|D4A720 [details] [associations]
symbol:Sfrs7 "Protein Sfrs7" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:CH473947
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
OrthoDB:EOG4Z62PZ IPI:IPI00392794 RefSeq:NP_001034124.2
UniGene:Rn.218757 SMR:D4A720 Ensembl:ENSRNOT00000038448
GeneID:362687 KEGG:rno:362687 NextBio:680884 Uniprot:D4A720
Length = 238
Score = 150 (57.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 35/89 (39%), Positives = 46/89 (51%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+DA L+G+ + GSR+ VE + R R P + RC+
Sbjct: 49 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCY 107
Query: 65 NCGIDGHWARDCKAGDWKNKCYRCGERGH 93
CG GH+A DC + + R R H
Sbjct: 108 ECGEKGHYAYDCHRYSRRRRS-RSRSRSH 135
Score = 49 (22.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 185 SPQDQRSPSPRDRRQANGSEY-SGSP 209
S RSPSP+ R +GS + S SP
Sbjct: 209 SRSKSRSPSPKRSRSPSGSPHRSASP 234
Score = 39 (18.8 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 195 RDRRQANGSEYSGSPRGKSRSPVDDAD-GPEDRNYRSP-PE 233
R R ++ S R KSRSP P +RS PE
Sbjct: 195 RSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASPE 235
Score = 34 (17.0 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 184 RSPQDQRSPSP 194
RSP +RS SP
Sbjct: 214 RSPSPKRSRSP 224
>UNIPROTKB|Q3T106 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10
GO:GO:0048025 HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
eggNOG:NOG315521 KO:K12896 HSSP:Q07955 EMBL:BC102184
IPI:IPI00713479 RefSeq:NP_001029449.1 UniGene:Bt.8206
ProteinModelPortal:Q3T106 SMR:Q3T106 STRING:Q3T106 PRIDE:Q3T106
Ensembl:ENSBTAT00000033124 GeneID:507066 KEGG:bta:507066 CTD:6432
InParanoid:Q3T106 OMA:LKRSRYF OrthoDB:EOG4Z62PZ NextBio:20867886
ArrayExpress:Q3T106 Uniprot:Q3T106
Length = 235
Score = 150 (57.9 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 35/89 (39%), Positives = 46/89 (51%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+DA L+G+ + GSR+ VE + R R P + RC+
Sbjct: 49 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCY 107
Query: 65 NCGIDGHWARDCKAGDWKNKCYRCGERGH 93
CG GH+A DC + + R R H
Sbjct: 108 ECGEKGHYAYDCHRYSRRRRS-RSRSRSH 135
Score = 47 (21.6 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
S RSPSP+ R SGSPR +S SP
Sbjct: 206 SRSKSRSPSPKRSRSP-----SGSPR-RSASP 231
Score = 43 (20.2 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS +RS S RR +GS R +SRS P +S
Sbjct: 164 RSVSLRRSRSASLRRSRSGSIKGSRSRSRSRSRSRSLSRPRSSRSKS 210
Score = 40 (19.1 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
S + RS S R R ++ S R KSRSP
Sbjct: 183 SIKGSRSRS-RSRSRSRSLSRPRSSRSKSRSP 213
>UNIPROTKB|Q16629 [details] [associations]
symbol:SRSF7 "Serine/arginine-rich splicing factor 7"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:CH471053 GO:GO:0005654 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 Gene3D:4.10.60.10 GO:GO:0000398
Reactome:REACT_1788 GO:GO:0048025 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 EMBL:AC074366
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:L22253 EMBL:L41887 EMBL:AB445102
EMBL:AY166860 EMBL:BT006745 EMBL:AY513287 EMBL:AK297161
EMBL:BC000997 EMBL:BC017369 EMBL:BC017908 EMBL:BC022328
IPI:IPI00003377 IPI:IPI00744364 IPI:IPI00917346 PIR:A57198
RefSeq:NP_001026854.1 RefSeq:NP_001182375.1 UniGene:Hs.309090
PDB:2HVZ PDBsum:2HVZ ProteinModelPortal:Q16629 SMR:Q16629
DIP:DIP-31790N IntAct:Q16629 MINT:MINT-3032898 STRING:Q16629
PhosphoSite:Q16629 DMDM:3929380 SWISS-2DPAGE:P99058 PaxDb:Q16629
PRIDE:Q16629 DNASU:6432 Ensembl:ENST00000313117
Ensembl:ENST00000431066 Ensembl:ENST00000443213
Ensembl:ENST00000446327 GeneID:6432 KEGG:hsa:6432 UCSC:uc002rqz.3
GeneCards:GC02M038971 HGNC:HGNC:10789 HPA:HPA043850 MIM:600572
neXtProt:NX_Q16629 PharmGKB:PA35705 InParanoid:Q16629
PhylomeDB:Q16629 EvolutionaryTrace:Q16629 GenomeRNAi:6432
NextBio:24983 ArrayExpress:Q16629 Bgee:Q16629 CleanEx:HS_SFRS7
Genevestigator:Q16629 GermOnline:ENSG00000115875 Uniprot:Q16629
Length = 238
Score = 150 (57.9 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 35/89 (39%), Positives = 46/89 (51%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+DA L+G+ + GSR+ VE + R R P + RC+
Sbjct: 49 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCY 107
Query: 65 NCGIDGHWARDCKAGDWKNKCYRCGERGH 93
CG GH+A DC + + R R H
Sbjct: 108 ECGEKGHYAYDCHRYSRRRRS-RSRSRSH 135
Score = 47 (21.6 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
S RSPSP+ R SGSPR +S SP
Sbjct: 209 SRSKSRSPSPKRSRSP-----SGSPR-RSASP 234
Score = 44 (20.5 bits), Expect = 5.1e-14, Sum P(2) = 5.1e-14
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSP 216
+SPS R R ++ S R KSRSP
Sbjct: 191 QSPS-RSRSRSRSISRPRSSRSKSRSP 216
>UNIPROTKB|J9P2I8 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 KO:K12896 CTD:6432 OMA:LKRSRYF
EMBL:AAEX03010868 RefSeq:XP_532939.2 ProteinModelPortal:J9P2I8
Ensembl:ENSCAFT00000043999 GeneID:475730 KEGG:cfa:475730
Uniprot:J9P2I8
Length = 238
Score = 150 (57.9 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 35/89 (39%), Positives = 46/89 (51%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+DA L+G+ + GSR+ VE + R R P + RC+
Sbjct: 49 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCY 107
Query: 65 NCGIDGHWARDCKAGDWKNKCYRCGERGH 93
CG GH+A DC + + R R H
Sbjct: 108 ECGEKGHYAYDCHRYSRRRRS-RSRSRSH 135
Score = 47 (21.6 bits), Expect = 2.5e-14, Sum P(2) = 2.5e-14
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
S RSPSP+ R SGSPR +S SP
Sbjct: 209 SRSKSRSPSPKRSRSP-----SGSPR-RSASP 234
Score = 37 (18.1 bits), Expect = 2.7e-13, Sum P(2) = 2.7e-13
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 195 RDRRQANGSEYSGSPRGKSRSP 216
R R ++ S R KSRSP
Sbjct: 195 RSRSRSRSLSRPRSSRSKSRSP 216
>UNIPROTKB|Q5ZMI0 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896 CTD:6432
OrthoDB:EOG4Z62PZ EMBL:AADN02041256 EMBL:AADN02041257 EMBL:AJ719404
IPI:IPI00581520 RefSeq:NP_001026539.1 UniGene:Gga.16686 SMR:Q5ZMI0
STRING:Q5ZMI0 Ensembl:ENSGALT00000022426 GeneID:426265
KEGG:gga:426265 InParanoid:Q5ZMI0 OMA:YRSFSPR NextBio:20827924
Uniprot:Q5ZMI0
Length = 223
Score = 149 (57.5 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 32/72 (44%), Positives = 41/72 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+DA L+G+ + GSR+ VE + R R P + RC+
Sbjct: 47 FAFVEFEDPRDAEDAVLGLDGKIICGSRVRVEVSTGMPRRSRYDRPP-ARRPFDPNDRCY 105
Query: 65 NCGIDGHWARDC 76
CG GH+A DC
Sbjct: 106 ECGEKGHYAYDC 117
Score = 46 (21.3 bits), Expect = 3.9e-14, Sum P(2) = 3.9e-14
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
SP+ RS SPR R +GS R +SRS
Sbjct: 165 SPRRYRSFSPR--RSRSGSLRRSRSRSRSRS 193
Score = 44 (20.5 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 184 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 216
RS +RS S R R ++ + S R KSRSP
Sbjct: 178 RSGSLRRSRSRSRSRSRSRSVVWPRSSRSKSRSP 211
Score = 37 (18.1 bits), Expect = 3.3e-13, Sum P(2) = 3.3e-13
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 185 SPQDQRSPSPRDRRQANGS 203
S RSPSP+ +GS
Sbjct: 204 SRSKSRSPSPKRSHSPSGS 222
Score = 34 (17.0 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 184 RSPQDQRSPSP 194
RSP +RS SP
Sbjct: 209 RSPSPKRSHSP 219
>MGI|MGI:1926232 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 MGI:MGI:1926232 GO:GO:0005634 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:4.10.60.10 GO:GO:0048025
HOVERGEN:HBG107480 GeneTree:ENSGT00700000104452 eggNOG:NOG315521
KO:K12896 CTD:6432 OMA:LKRSRYF OrthoDB:EOG4Z62PZ EMBL:AK032861
EMBL:AK045884 EMBL:AK082848 EMBL:BC014857 EMBL:BC025529
EMBL:BC027391 IPI:IPI00153743 IPI:IPI00222763 IPI:IPI00474158
IPI:IPI00474169 RefSeq:NP_001182414.1 RefSeq:NP_001182415.1
RefSeq:NP_001182416.1 RefSeq:NP_666195.1 UniGene:Mm.292016
ProteinModelPortal:Q8BL97 SMR:Q8BL97 DIP:DIP-36580N IntAct:Q8BL97
STRING:Q8BL97 PhosphoSite:Q8BL97 PaxDb:Q8BL97 PRIDE:Q8BL97
Ensembl:ENSMUST00000063417 GeneID:225027 KEGG:mmu:225027
UCSC:uc008dqt.2 InParanoid:Q8BL97 ChiTaRS:SRSF7 NextBio:377508
Bgee:Q8BL97 CleanEx:MM_SFRS7 Genevestigator:Q8BL97
GermOnline:ENSMUSG00000024097 Uniprot:Q8BL97
Length = 267
Score = 150 (57.9 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 35/89 (39%), Positives = 46/89 (51%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+DA L+G+ + GSR+ VE + R R P + RC+
Sbjct: 78 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCY 136
Query: 65 NCGIDGHWARDCKAGDWKNKCYRCGERGH 93
CG GH+A DC + + R R H
Sbjct: 137 ECGEKGHYAYDCHRYSRRRRS-RSRSRSH 164
Score = 49 (22.3 bits), Expect = 5.2e-14, Sum P(2) = 5.2e-14
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 185 SPQDQRSPSPRDRRQANGSEY-SGSP 209
S RSPSP+ R +GS + S SP
Sbjct: 238 SRSKSRSPSPKRSRSPSGSPHRSASP 263
Score = 39 (18.8 bits), Expect = 5.6e-13, Sum P(2) = 5.6e-13
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 195 RDRRQANGSEYSGSPRGKSRSPVDDAD-GPEDRNYRSP-PE 233
R R ++ S R KSRSP P +RS PE
Sbjct: 224 RSRSRSRSISRPRSSRSKSRSPSPKRSRSPSGSPHRSASPE 264
Score = 34 (17.0 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 184 RSPQDQRSPSP 194
RSP +RS SP
Sbjct: 243 RSPSPKRSRSP 253
>ZFIN|ZDB-GENE-040426-1798 [details] [associations]
symbol:zgc:77155 "zgc:77155" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
ZFIN:ZDB-GENE-040426-1798 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:BX547938 GeneTree:ENSGT00700000104452
HOGENOM:HOG000276234 KO:K12896 EMBL:BC065586 IPI:IPI00493121
RefSeq:NP_991236.1 UniGene:Dr.701 SMR:Q6P0K2 STRING:Q6P0K2
Ensembl:ENSDART00000051185 Ensembl:ENSDART00000135776 GeneID:402972
KEGG:dre:402972 InParanoid:Q6P0K2 NextBio:20816781 Uniprot:Q6P0K2
Length = 258
Score = 130 (50.8 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 30/88 (34%), Positives = 47/88 (53%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVE+ D RDA+DA ++G+ + G+R+ VE + R + P + RC+
Sbjct: 52 FAFVEYEDARDAEDAVKGMDGKVLCGARVRVELSNGMSRKSRYGRPSRRQFDP--NDRCY 109
Query: 65 NCGIDGHWARDC-KAGDWKNKCYRCGER 91
CG GH+A DC + +++ R G R
Sbjct: 110 QCGETGHYAYDCYRFSKRRSRRSRSGSR 137
Score = 70 (29.7 bits), Expect = 6.7e-14, Sum P(2) = 6.7e-14
Identities = 21/46 (45%), Positives = 26/46 (56%)
Query: 190 RSPSPRDRRQANGS---EYSGSPRGKSRSPVDDADGPEDRNY-RSP 231
RSPS RR +GS S SP G+SRSPV + P R+ R+P
Sbjct: 159 RSPSYSKRRSRSGSPGRSRSRSPGGRSRSPVRRSKSPVRRSRSRTP 204
Score = 43 (20.2 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 195 RDRRQANGSEYSGSPRGKS-RSPVDDADGPEDRNYRSP 231
R RR +GS RG+ RS +R YRSP
Sbjct: 128 RSRRSRSGSRSRSRSRGRRYRS----RSRSNERRYRSP 161
Score = 36 (17.7 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRS 215
R+P RD R + S SGS R + RS
Sbjct: 202 RTPLHRDSRSRSRSR-SGS-RQRDRS 225
>UNIPROTKB|F1S4R5 [details] [associations]
symbol:SRSF7 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0048025 GeneTree:ENSGT00700000104452
OMA:LKRSRYF EMBL:FP102731 Ensembl:ENSSSCT00000009286 Uniprot:F1S4R5
Length = 268
Score = 149 (57.5 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 32/72 (44%), Positives = 41/72 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+DA L+G+ + GSR+ VE + R R P + RC+
Sbjct: 76 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCY 134
Query: 65 NCGIDGHWARDC 76
CG GH+A DC
Sbjct: 135 ECGEKGHYAYDC 146
Score = 47 (21.6 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
S RSPSP+ R SGSPR +S SP
Sbjct: 239 SRSKSRSPSPKRSRSP-----SGSPR-RSASP 264
Score = 37 (18.1 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 195 RDRRQANGSEYSGSPRGKSRSP 216
R R ++ S R KSRSP
Sbjct: 225 RSRSRSRSLSRPRSSRSKSRSP 246
>ZFIN|ZDB-GENE-050913-95 [details] [associations]
symbol:srsf7 "serine/arginine-rich splicing factor
7" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 ZFIN:ZDB-GENE-050913-95
GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HOVERGEN:HBG107480 OrthoDB:EOG4Z62PZ
EMBL:BC133851 IPI:IPI00845046 UniGene:Dr.89486
ProteinModelPortal:A3KNI1 SMR:A3KNI1 PRIDE:A3KNI1 eggNOG:NOG299298
Uniprot:A3KNI1
Length = 210
Score = 142 (55.0 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 33/89 (37%), Positives = 45/89 (50%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+D+ L+G+ + GSR+ VE + R P + RC+
Sbjct: 49 FAFVEFEDPRDAEDSVRGLDGKVICGSRVRVELSTGMPRRSRYDHPP-SRRPFDPNDRCY 107
Query: 65 NCGIDGHWARDCKAGDWKNKCYRCGERGH 93
CG GH+A DC + + R R H
Sbjct: 108 ECGEKGHYAYDCHRYSRRRRT-RSRSRSH 135
Score = 40 (19.1 bits), Expect = 8.6e-13, Sum P(2) = 8.6e-13
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 227
RS SPR R +GS SG+ R SRS G R+
Sbjct: 154 RSLSPRSR---SGSARSGT-RTHSRSRSRSHSGSAHRS 187
>UNIPROTKB|F1LZA3 [details] [associations]
symbol:F1LZA3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 IPI:IPI00776911
Ensembl:ENSRNOT00000038472 Uniprot:F1LZA3
Length = 262
Score = 135 (52.6 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 30/72 (41%), Positives = 38/72 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+D L+G+ + GS + VE + R R P RC+
Sbjct: 52 FAFVEFEDPRDAEDLVRGLDGKVICGSGVRVELSTVMPRRSRFDRPPAHRPFNPND-RCY 110
Query: 65 NCGIDGHWARDC 76
CG GH+A DC
Sbjct: 111 ECGEKGHYAYDC 122
Score = 50 (22.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 185 SPQDQRSPSPRDRRQANGSEY-SGSP--RGKSR 214
S RSPSP+ R GS + S SP RG+ R
Sbjct: 167 SRSKSRSPSPKRSRSPAGSPHRSTSPARRGRRR 199
Score = 43 (20.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 15/45 (33%), Positives = 17/45 (37%)
Query: 194 PRDRRQANGSEYSGSPRGKSRSPVDDAD-GPEDRNYRSP-PEENG 236
PR R + S R KSRSP P +RS P G
Sbjct: 152 PRSRSKYRSISLPRSSRSKSRSPSPKRSRSPAGSPHRSTSPARRG 196
>FB|FBgn0028554 [details] [associations]
symbol:x16 species:7227 "Drosophila melanogaster" [GO:0005634
"nucleus" evidence=IDA;NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS;NAS] [GO:0005681 "spliceosomal
complex" evidence=NAS] [GO:0003723 "RNA binding" evidence=ISM]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376 "mRNA splice
site selection" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007399 "nervous system development"
evidence=NAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IPI] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343
SMART:SM00360 EMBL:AE014134 GO:GO:0000166 GO:GO:0008270
GO:GO:0003729 Gene3D:3.30.70.330 Gene3D:4.10.60.10 SUPFAM:SSF57756
HSSP:P19339 GO:GO:0071011 GO:GO:0071013 GO:GO:0006376
GeneTree:ENSGT00700000104452 eggNOG:NOG315521 KO:K12896 OMA:FARECRN
EMBL:AF232774 EMBL:AY095057 EMBL:AJ249466 RefSeq:NP_723226.1
UniGene:Dm.33422 SMR:Q9V3V0 STRING:Q9V3V0
EnsemblMetazoa:FBtr0079368 GeneID:33967 KEGG:dme:Dmel_CG10203
UCSC:CG10203-RA CTD:33967 FlyBase:FBgn0028554 InParanoid:Q9V3V0
OrthoDB:EOG40P2QD GenomeRNAi:33967 NextBio:786184 Uniprot:Q9V3V0
Length = 258
Score = 129 (50.5 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 37/95 (38%), Positives = 43/95 (45%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF RDA DA L+GR V G R VE + G G G G
Sbjct: 46 FAFVEFESARDAADAVRGLDGRTVCGRRARVELSTGKYARS-------GGGGGGGGGGGG 98
Query: 65 NCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQ 99
G+ G GD +KCY CG RGH R+C+
Sbjct: 99 GGGLGGRDRGGGGRGD--DKCYECGGRGHFARHCR 131
Score = 52 (23.4 bits), Expect = 6.5e-12, Sum P(2) = 6.5e-12
Identities = 18/48 (37%), Positives = 22/48 (45%)
Query: 191 SPSPRDRRQANGSE--YSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 236
SP P RR + + GSPR +SRS + P R SPP G
Sbjct: 204 SPPPPKRRYEDEDDDRVRGSPRSRSRSR---SASPAVRR-GSPPRRRG 247
Score = 37 (18.1 bits), Expect = 2.3e-10, Sum P(2) = 2.3e-10
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 198 RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 234
R NGS S ++ S D+ P R Y ++
Sbjct: 182 RDENGSASRYSDHERNGSGAVDSPPPPKRRYEDEDDD 218
>UNIPROTKB|E1BVX5 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 OMA:LKRSRYF EMBL:AADN02041253
EMBL:AADN02041254 EMBL:AADN02041255 EMBL:AADN02041256
IPI:IPI00821462 ProteinModelPortal:E1BVX5
Ensembl:ENSGALT00000038945 ArrayExpress:E1BVX5 Uniprot:E1BVX5
Length = 235
Score = 128 (50.1 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 30/72 (41%), Positives = 36/72 (50%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA S R + GSR+ VE + R R P + RC+
Sbjct: 49 FAFVEFEDPRDAKPLLKSSKSRVICGSRVRVEVSTGMPRRSRYDRPP-ARRPFDPNDRCY 107
Query: 65 NCGIDGHWARDC 76
CG GH+A DC
Sbjct: 108 ECGEKGHYAYDC 119
Score = 50 (22.7 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
SP+ RS SPR R +GS R +SRS P +S
Sbjct: 167 SPRRSRSVSPR--RSRSGSLKRSRSRSRSRSRSRSVTWPRSSRSKS 210
Score = 48 (22.0 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 185 SPQDQRSPSPRDRRQANGS-EYSGSP 209
S RSPSP+ R +GS + S SP
Sbjct: 206 SRSKSRSPSPKRSRSPSGSPQRSASP 231
Score = 45 (20.9 bits), Expect = 2.4e-11, Sum P(2) = 2.4e-11
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 184 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 216
RS +RS S R R ++ + S R KSRSP
Sbjct: 180 RSGSLKRSRSRSRSRSRSRSVTWPRSSRSKSRSP 213
Score = 38 (18.4 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 184 RSPQDQRSPSPRDRRQANGS 203
RSP +RS SP Q + S
Sbjct: 211 RSPSPKRSRSPSGSPQRSAS 230
>DICTYBASE|DDB_G0284245 [details] [associations]
symbol:DDB_G0284245 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0284245 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 EMBL:AAFI02000064 ProtClustDB:CLSZ2846728
RefSeq:XP_638672.1 ProteinModelPortal:Q54PX3 PRIDE:Q54PX3
EnsemblProtists:DDB0233309 GeneID:8624501 KEGG:ddi:DDB_G0284245
eggNOG:KOG0106 InParanoid:Q54PX3 OMA:DDAINSE Uniprot:Q54PX3
Length = 365
Score = 133 (51.9 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 32/86 (37%), Positives = 45/86 (52%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 60
+++ F F+E+ D ADDA S + ++ G IIVE + S + + R P S
Sbjct: 33 LRKGFCFIEYFDKASADDAINSEHKQNFLGRNIIVELSN--------SSKGIKR-PDSSS 83
Query: 61 GRCFNCGIDGHWARDCKAGDWKNKCY 86
G+CF C +GHWAR C G KN Y
Sbjct: 84 GKCFMCNEEGHWARSCPNGGKKNSRY 109
Score = 45 (20.9 bits), Expect = 6.3e-11, Sum P(2) = 6.3e-11
Identities = 14/47 (29%), Positives = 19/47 (40%)
Query: 182 DERSPQDQRSPSPRDR-RQANGSEYSGSPRGKSRSPVDDADGPEDRN 227
D+R D+R R R R + R +SR D D DR+
Sbjct: 133 DDRRRSDKRRERDRSRSRSRSRDNRRRDDRDRSRDRSRDRDRSRDRS 179
Score = 43 (20.2 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 227
+RS RS R R + S R +SR D D DR+
Sbjct: 145 DRSRSRSRSRDNRRRDDRDRSRDRSRDRDRSRDRSRDRDRSRDRD 189
Score = 42 (19.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 184 RSP-QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDA-DGPEDRNYRSPPEEN 235
RSP ++ R RDR ++G+ +G+ R +SRS + + P + N + N
Sbjct: 268 RSPSKENRYRRERDR-SSSGTR-NGNGRDRSRSTSRNGLNKPNNNNNNNNNNNN 319
Score = 35 (17.4 bits), Expect = 6.8e-10, Sum P(2) = 6.8e-10
Identities = 6/31 (19%), Positives = 15/31 (48%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
P + + + + ++NG+ R ++ SP
Sbjct: 307 PNNNNNNNNNNNNKSNGNRSRSGSRNRNPSP 337
>DICTYBASE|DDB_G0291966 [details] [associations]
symbol:DDB_G0291966 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0291966
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000186 Gene3D:4.10.60.10 OMA:SKISVEW
eggNOG:NOG77895 RefSeq:XP_001134500.1 ProteinModelPortal:Q1ZXB1
EnsemblProtists:DDB0233327 GeneID:8628419 KEGG:ddi:DDB_G0291966
InParanoid:Q1ZXB1 ProtClustDB:CLSZ2846728 Uniprot:Q1ZXB1
Length = 312
Score = 128 (50.1 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 33/91 (36%), Positives = 44/91 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R +AFVE+ + RDADDA +LNG + S+I VE+A G + +
Sbjct: 38 RCYAFVEYKERRDADDALKALNGTTLLNSKISVEWAKG--------------GKNADNNK 83
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGH 93
CF CG +GHW + C G K R R H
Sbjct: 84 CFACGQEGHWIKSCPNGGKKRSRDRSLSRSH 114
Score = 47 (21.6 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 17/49 (34%), Positives = 24/49 (48%)
Query: 183 ERSPQDQRSPSPRDRRQANG--SEYSGSPRGKSRSPVDDADGPEDRNYR 229
+R + R S RDR ++NG S YS S R +SR D R+ +
Sbjct: 219 DRRRNNSRDRS-RDRSRSNGGGSRYS-SRRDRSRDRSRDRSRDRSRSLK 265
Score = 34 (17.0 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 14/45 (31%), Positives = 19/45 (42%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 227
+RS +D+R RDRR + R +SR D RN
Sbjct: 148 DRS-RDRRDRR-RDRRDRSRDRSRDGRRERSRDRSRDRSRDARRN 190
>RGD|1307425 [details] [associations]
symbol:Srsf7 "serine/arginine-rich splicing factor 7"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 RGD:1307425 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
HOVERGEN:HBG107480 EMBL:CH473947 eggNOG:NOG315521 UniGene:Rn.218757
NextBio:680884 EMBL:BC099175 IPI:IPI00969773 SMR:Q4KLJ1
UCSC:RGD:1307425 Genevestigator:Q4KLJ1 Uniprot:Q4KLJ1
Length = 157
Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 32/72 (44%), Positives = 41/72 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFVEF DPRDA+DA L+G+ + GSR+ VE + R R P + RC+
Sbjct: 49 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRRSRFDRPP-ARRPFDPNDRCY 107
Query: 65 NCGIDGHWARDC 76
CG GH+A DC
Sbjct: 108 ECGEKGHYAYDC 119
>ZFIN|ZDB-GENE-030131-591 [details] [associations]
symbol:srsf4 "serine/arginine-rich splicing factor
4" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-591 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 HSSP:Q14103
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6429 EMBL:BC046895 EMBL:CR450687 IPI:IPI00503693
RefSeq:NP_955868.1 RefSeq:XP_003200617.1 UniGene:Dr.4165
Ensembl:ENSDART00000125200 GeneID:321872 KEGG:dre:321872
InParanoid:Q802Y1 NextBio:20807565 Uniprot:Q802Y1
Length = 366
Score = 128 (50.1 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 30/65 (46%), Positives = 35/65 (53%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXX----XXXSREYLGRGP 56
+K + FVEF DPRDADDA Y LNG+D+ G R+IVE S Y GRG
Sbjct: 33 LKNGYGFVEFDDPRDADDAVYDLNGKDLCGKRVIVEHTIGQRRDGGNRSGRSNRY-GRGG 91
Query: 57 PPGSG 61
G G
Sbjct: 92 GGGGG 96
Score = 45 (20.9 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 184 RSPQDQRSPSPRDRRQ---ANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 236
RS RS S R RR + S SG+ +SRS + + R+ R NG
Sbjct: 190 RSASRSRSRSRRSRRSRSHSRTSSRSGASGSRSRSR-STSKKAKSRSSRMEESSNG 244
Score = 44 (20.5 bits), Expect = 2.8e-10, Sum P(2) = 2.8e-10
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 218
RSPQ+++S R+ ++ S S R KSR+ D
Sbjct: 259 RSPQNKKSK--RENKRGRSDSRSRS-RSKSRNDRD 290
Score = 41 (19.5 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 182 DERSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRS 215
D+R RS S + R + YS S R +SRS
Sbjct: 331 DQRRESRSRSRSRSKSRSHSRSQSYSRS-RSRSRS 364
Score = 41 (19.5 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 190 RSPSPRDRRQANGSEY---SGSPRGKSRSPVDDADGPEDRNYRS 230
+S S R +NG+ SG SRSP + E++ RS
Sbjct: 232 KSRSSRMEESSNGARKGGDSGRDNSLSRSPQNKKSKRENKRGRS 275
Score = 38 (18.4 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
R+ RS +P + Q S R KSRS
Sbjct: 317 RAHSRSRSQTPPNADQRRESRSRSRSRSKSRS 348
Score = 35 (17.4 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 182 DERSPQDQRSPSPRDRRQANGSE 204
D RS +S + RD + +GS+
Sbjct: 276 DSRSRSRSKSRNDRDLSRESGSK 298
>WB|WBGene00004699 [details] [associations]
symbol:rsp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0010171 "body
morphogenesis" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 116 (45.9 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
MK F FV+F D RDADDA + LNG+++ G R+I+EF
Sbjct: 33 MKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEF 69
Score = 64 (27.6 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 183 ERSPQDQRSPSPR---DRRQANGSEY---SGSPRGKSRSPVDDADGPEDRNYRSPP 232
+RS + RS SP+ D+R + S+ SG R +S SP + + P+ R S P
Sbjct: 219 DRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSP 274
Score = 59 (25.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
RS SPR R ++ S SP + RSP D + R+ SP + +
Sbjct: 190 RSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRS-ASPKKRS 234
Score = 52 (23.4 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 221
RS RS SP RR++ GS+ S + +S SP +D
Sbjct: 199 RSRSPTRSRSPPARRRSPGSDRSDR-KSRSASPKKRSD 235
Score = 49 (22.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 232
+RS + RS S R S SP +S SP D R+ + P
Sbjct: 232 KRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSASP 281
Score = 36 (17.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 210 RGKSRSPVDDADGPEDRNYRSPP 232
R +SRSP + RSPP
Sbjct: 188 RSRSRSPRRRSRSRSPTRSRSPP 210
>UNIPROTKB|Q23120 [details] [associations]
symbol:rsp-2 "Probable splicing factor,
arginine/serine-rich 2" species:6239 "Caenorhabditis elegans"
[GO:0002119 "nematode larval development" evidence=IGI] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] [GO:0008406 "gonad development"
evidence=IGI] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0040010 GO:GO:0030154 GO:GO:0008406
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0007283 GO:GO:0003723 GO:GO:0007506 GO:GO:0040035
GO:GO:0000398 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
PIR:T26084 RefSeq:NP_496441.1 ProteinModelPortal:Q23120 SMR:Q23120
DIP:DIP-26059N MINT:MINT-1081489 STRING:Q23120 PaxDb:Q23120
EnsemblMetazoa:W02B12.2 GeneID:174747 KEGG:cel:CELE_W02B12.2
UCSC:W02B12.2 CTD:174747 WormBase:W02B12.2 InParanoid:Q23120
OMA:GYNEERS NextBio:885320 Uniprot:Q23120
Length = 281
Score = 116 (45.9 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 21/37 (56%), Positives = 28/37 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
MK F FV+F D RDADDA + LNG+++ G R+I+EF
Sbjct: 33 MKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEF 69
Score = 64 (27.6 bits), Expect = 3.5e-09, Sum P(2) = 3.5e-09
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 183 ERSPQDQRSPSPR---DRRQANGSEY---SGSPRGKSRSPVDDADGPEDRNYRSPP 232
+RS + RS SP+ D+R + S+ SG R +S SP + + P+ R S P
Sbjct: 219 DRSDRKSRSASPKKRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSP 274
Score = 59 (25.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
RS SPR R ++ S SP + RSP D + R+ SP + +
Sbjct: 190 RSRSPRRRSRSRSPTRSRSPPARRRSPGSDRSDRKSRS-ASPKKRS 234
Score = 52 (23.4 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 221
RS RS SP RR++ GS+ S + +S SP +D
Sbjct: 199 RSRSPTRSRSPPARRRSPGSDRSDR-KSRSASPKKRSD 235
Score = 49 (22.3 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 15/50 (30%), Positives = 20/50 (40%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 232
+RS + RS S R S SP +S SP D R+ + P
Sbjct: 232 KRSDKRARSESKSRSRSGGRRSRSNSPPNRSPSPKKRRDNSSPRSGSASP 281
Score = 36 (17.7 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 210 RGKSRSPVDDADGPEDRNYRSPP 232
R +SRSP + RSPP
Sbjct: 188 RSRSRSPRRRSRSRSPTRSRSPP 210
>UNIPROTKB|B4E241 [details] [associations]
symbol:SFRS3 "Splicing factor, arginine/serine-rich 3,
isoform CRA_a" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471081 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z85986 OrthoDB:EOG4VDQ12
UniGene:Hs.405144 HGNC:HGNC:10785 ChiTaRS:SRSF3 EMBL:AK304097
IPI:IPI00843996 SMR:B4E241 STRING:B4E241 Ensembl:ENST00000339436
Ensembl:ENST00000477442 UCSC:uc011dtp.1 HOGENOM:HOG000208722
HOVERGEN:HBG104956 Uniprot:B4E241
Length = 124
Score = 111 (44.1 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 29/58 (50%), Positives = 33/58 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + SR RGPPP GR
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 36 (17.7 bits), Expect = 3.6e-09, Sum P(2) = 3.6e-09
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 184 RSPQD---QRSPSPRDR 197
R P+D +RSP PR R
Sbjct: 98 RRPRDDYRRRSPPPRRR 114
>UNIPROTKB|Q6K9C3 [details] [associations]
symbol:RSZ23 "Serine/arginine-rich splicing factor RSZ23"
species:39947 "Oryza sativa Japonica Group" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA] InterPro:IPR000504
InterPro:IPR001878 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098
PROSITE:PS50102 PROSITE:PS50158 SMART:SM00343 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0046872 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP008208
GO:GO:0000398 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AP004063 EMBL:AK060088 EMBL:AK099572
EMBL:AK104726 RefSeq:NP_001047400.1 UniGene:Os.12017
ProteinModelPortal:Q6K9C3 STRING:Q6K9C3
EnsemblPlants:LOC_Os02g39720.3 EnsemblPlants:LOC_Os02g39720.4
EnsemblPlants:LOC_Os02g39720.6 GeneID:4329951 KEGG:osa:4329951
Gramene:Q6K9C3 Uniprot:Q6K9C3
Length = 200
Score = 105 (42.0 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 28/74 (37%), Positives = 40/74 (54%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG-RC 63
FAF++F D RDA+DA L+G++ G R VE + GR GS +C
Sbjct: 40 FAFIDFDDRRDAEDAIRDLDGKN--GWR--VELSTKAGSGR-------GRDRSGGSDMKC 88
Query: 64 FNCGIDGHWARDCK 77
+ CG GH+AR+C+
Sbjct: 89 YECGEPGHFARECR 102
Score = 73 (30.8 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 24/56 (42%), Positives = 31/56 (55%)
Query: 184 RSPQDQRSPS----PRDRRQANGSEYSGSPR-GKSRSPVDDADGPEDRNY-RSPPE 233
RSP+ +RSPS PRDR S YS SP ++RS P +R+Y RSP +
Sbjct: 133 RSPRYRRSPSYGRSPRDRSPKRRS-YSRSPPPARARSYSRSPPPPRERSYSRSPAQ 187
Score = 71 (30.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 74 RDCKAGDWKNKCYRCGERGHIERNCQ 99
RD ++G KCY CGE GH R C+
Sbjct: 78 RD-RSGGSDMKCYECGEPGHFARECR 102
Score = 70 (29.7 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY-RSPP 232
RS RSP R R ++ Y SP RSP D + P+ R+Y RSPP
Sbjct: 116 RSRSRSRSPRYRGRSRSRSPRYRRSP-SYGRSPRDRS--PKRRSYSRSPP 162
Score = 55 (24.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 23/56 (41%), Positives = 29/56 (51%)
Query: 184 RSPQDQ---RSPSPRDRRQANGSEYSGSPRGKS--RSPVDDADGP-EDRNY-RSPP 232
RSP+ + RS SPR RR + Y SPR +S R + P R+Y RSPP
Sbjct: 122 RSPRYRGRSRSRSPRYRRSPS---YGRSPRDRSPKRRSYSRSPPPARARSYSRSPP 174
Score = 51 (23.0 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 20/50 (40%), Positives = 23/50 (46%)
Query: 184 RSPQDQRSPSPRDRRQ----ANGSEYSGSP-----RGKSRSPVDDADGPE 224
RSP+D RSP R + A YS SP R SRSP A+ E
Sbjct: 145 RSPRD-RSPKRRSYSRSPPPARARSYSRSPPPPRERSYSRSPAQPANREE 193
Score = 35 (17.4 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 12/37 (32%), Positives = 15/37 (40%)
Query: 184 RSPQDQR----SPSPRDRRQANGSEYSGSPRGKSRSP 216
RSP R S SP R+ + S P + SP
Sbjct: 159 RSPPPARARSYSRSPPPPRERSYSRSPAQPANREESP 195
>ZFIN|ZDB-GENE-041219-1 [details] [associations]
symbol:srsf6b "serine/arginine-rich splicing factor
6b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-041219-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 KO:K12893
EMBL:BC086820 IPI:IPI00502132 RefSeq:NP_001008732.1
UniGene:Dr.76948 ProteinModelPortal:Q5M9N3 STRING:Q5M9N3
PRIDE:Q5M9N3 GeneID:494133 KEGG:dre:494133 CTD:494133
InParanoid:Q5M9N3 NextBio:20865634 ArrayExpress:Q5M9N3 Bgee:Q5M9N3
Uniprot:Q5M9N3
Length = 355
Score = 118 (46.6 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+++ G R+IVE A
Sbjct: 33 LKNGYGFVEFEDTRDADDAVYELNGKELCGERVIVEHA 70
Score = 62 (26.9 bits), Expect = 6.5e-09, Sum P(2) = 6.5e-09
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS--PVDDADGPEDRNY-RSP-PEEN 235
RS ++ S RD R + E S S + +SRS P ++ DG ++ RSP P+EN
Sbjct: 272 RSRSRSKAKSERDSR-SRSREKSTSRKSRSRSASPRENGDGERVKSTSRSPSPKEN 326
Score = 50 (22.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 183 ERSPQDQRSPSPRDRR-QANGSEYSGSPRGKSRS 215
ER RSPSP++ R Q + R +S+S
Sbjct: 312 ERVKSTSRSPSPKENRHQLESPRKRSASRSRSKS 345
Score = 44 (20.5 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 17/47 (36%), Positives = 21/47 (44%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS +RS S R RR + S R +SRS + R YRS
Sbjct: 199 RSRSRRRSRS-RSRRSSRSQSRS---RSRSRSRSKHSRSRSGRKYRS 241
Score = 44 (20.5 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 14/55 (25%), Positives = 27/55 (49%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRSPVDDADGPEDRNYRSPPEENG 236
++S RS + + R ++ + S R +SRS + + + R+ + P ENG
Sbjct: 256 KKSRSRSRSRTEKSRSRSRSRSKAKSERDSRSRSR-EKSTSRKSRSRSASPRENG 309
Score = 43 (20.2 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS + RS S R R+++ +S R +SRS
Sbjct: 234 RSGRKYRSRS-RSSRKSHSKSHSKKSRSRSRS 264
Score = 38 (18.4 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S RR + S S + +SRS
Sbjct: 191 RSYSASRSRSRSRRRSRSRSRRSSRSQSRSRS 222
Score = 36 (17.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 194 PRDRRQANGSEYSGSPRGKSRS 215
PR RR + S R +SRS
Sbjct: 187 PRRRRSYSASRSRSRSRRRSRS 208
>WB|WBGene00004698 [details] [associations]
symbol:rsp-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040011
"locomotion" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040026 "positive
regulation of vulval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0009792 "embryo development ending
in birth or egg hatching" evidence=IMP] [GO:0002119 "nematode
larval development" evidence=IMP] [GO:0007283 "spermatogenesis"
evidence=IMP] [GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0030154 GO:GO:0008406 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0007283
GO:GO:0003723 GO:GO:0000398 GO:GO:0040026 eggNOG:COG0724
GO:GO:0001703 EMBL:Z66521 PIR:T26085 RefSeq:NP_496442.1
RefSeq:NP_871913.1 RefSeq:NP_871914.1 ProteinModelPortal:Q23121
SMR:Q23121 STRING:Q23121 PaxDb:Q23121 PRIDE:Q23121
EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2 GeneID:174748
KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748 WormBase:W02B12.3a
WormBase:W02B12.3b WormBase:W02B12.3c GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 InParanoid:Q23121 KO:K12893 OMA:GYGQIRD
NextBio:885324 Uniprot:Q23121
Length = 312
Score = 109 (43.4 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K F FVEF D RDA+DA + LNG+++ G R+I++++
Sbjct: 34 LKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 74 (31.1 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 184 RSPQD-QRSPSPRDRRQANGSEYSGSPR-GKSRSPVDDADG 222
RSP+ RSPSP R + SE GSPR +S SP+D+ DG
Sbjct: 272 RSPKKVDRSPSP-PRGSRSPSE-KGSPRRSRSASPMDNGDG 310
Score = 58 (25.5 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 23/62 (37%), Positives = 27/62 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGS---------PRGKSRSP--VDDADGPEDRNYRSPP 232
RS RSP R RR++ S S R SRSP VD + P R RSP
Sbjct: 233 RSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPP-RGSRSPS 291
Query: 233 EE 234
E+
Sbjct: 292 EK 293
Score = 48 (22.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 184 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 216
RS RS S RDRR++ S S + +SRSP
Sbjct: 209 RSNSRSRSRSRSRDRRRSR-SRSSSRSKSRSRSP 241
Score = 41 (19.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 191 SPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEEN 235
S + R R ++N S S R + RS + + R+ RSPP+ +
Sbjct: 201 SQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRS-RSPPKRS 245
Score = 35 (17.4 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 182 DERSPQDQRSPSPRD 196
++ SP+ RS SP D
Sbjct: 292 EKGSPRRSRSASPMD 306
>UNIPROTKB|Q23121 [details] [associations]
symbol:rsp-1 "Probable splicing factor,
arginine/serine-rich 1" species:6239 "Caenorhabditis elegans"
[GO:0007275 "multicellular organismal development" evidence=IGI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0003723 "RNA binding" evidence=NAS] [GO:0040009
"regulation of growth rate" evidence=IGI] [GO:0007283
"spermatogenesis" evidence=IGI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0030154
GO:GO:0008406 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0007283 GO:GO:0003723 GO:GO:0000398
GO:GO:0040026 eggNOG:COG0724 GO:GO:0001703 EMBL:Z66521 PIR:T26085
RefSeq:NP_496442.1 RefSeq:NP_871913.1 RefSeq:NP_871914.1
ProteinModelPortal:Q23121 SMR:Q23121 STRING:Q23121 PaxDb:Q23121
PRIDE:Q23121 EnsemblMetazoa:W02B12.3a.1 EnsemblMetazoa:W02B12.3a.2
GeneID:174748 KEGG:cel:CELE_W02B12.3 UCSC:W02B12.3a CTD:174748
WormBase:W02B12.3a WormBase:W02B12.3b WormBase:W02B12.3c
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 InParanoid:Q23121
KO:K12893 OMA:GYGQIRD NextBio:885324 Uniprot:Q23121
Length = 312
Score = 109 (43.4 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K F FVEF D RDA+DA + LNG+++ G R+I++++
Sbjct: 34 LKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYS 71
Score = 74 (31.1 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 21/41 (51%), Positives = 26/41 (63%)
Query: 184 RSPQD-QRSPSPRDRRQANGSEYSGSPR-GKSRSPVDDADG 222
RSP+ RSPSP R + SE GSPR +S SP+D+ DG
Sbjct: 272 RSPKKVDRSPSP-PRGSRSPSE-KGSPRRSRSASPMDNGDG 310
Score = 58 (25.5 bits), Expect = 3.6e-07, Sum P(2) = 3.6e-07
Identities = 23/62 (37%), Positives = 27/62 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGS---------PRGKSRSP--VDDADGPEDRNYRSPP 232
RS RSP R RR++ S S R SRSP VD + P R RSP
Sbjct: 233 RSKSRSRSPPKRSRRESKSKSRSRSRSRSADNRKSRSPSRSPKKVDRSPSPP-RGSRSPS 291
Query: 233 EE 234
E+
Sbjct: 292 EK 293
Score = 48 (22.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 15/34 (44%), Positives = 19/34 (55%)
Query: 184 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 216
RS RS S RDRR++ S S + +SRSP
Sbjct: 209 RSNSRSRSRSRSRDRRRSR-SRSSSRSKSRSRSP 241
Score = 41 (19.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 191 SPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEEN 235
S + R R ++N S S R + RS + + R+ RSPP+ +
Sbjct: 201 SQAGRSRSRSNSRSRSRSRSRDRRRSRSRSSSRSKSRS-RSPPKRS 245
Score = 35 (17.4 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 182 DERSPQDQRSPSPRD 196
++ SP+ RS SP D
Sbjct: 292 EKGSPRRSRSASPMD 306
>UNIPROTKB|F1M8R2 [details] [associations]
symbol:F1M8R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00343
SMART:SM00360 GO:GO:0000166 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00564263 Ensembl:ENSRNOT00000047994
Uniprot:F1M8R2
Length = 212
Score = 118 (46.6 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 29/71 (40%), Positives = 36/71 (50%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFV F DPRDA+DA L G+ + GSR+ VE + R P RC+
Sbjct: 44 FAFV-FEDPRDAEDAVGGLGGKVICGSRVRVELSTGMPRRSRFDRPPACHPFDPND-RCY 101
Query: 65 NCGIDGHWARD 75
CG GH+A D
Sbjct: 102 ECGEQGHYAYD 112
Score = 49 (22.3 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 184 RSPQDQ-RSPSPRDRRQANGSEY-SGSP 209
RS Q + RSPSPR +GS + S SP
Sbjct: 181 RSCQSKSRSPSPRRSHSPSGSPHRSASP 208
>UNIPROTKB|B4DP17 [details] [associations]
symbol:CNBP "cDNA FLJ61146, highly similar to Cellular
nucleic acid-binding protein" species:9606 "Homo sapiens"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 EMBL:AC108673 EMBL:AC135587
UniGene:Hs.518249 HGNC:HGNC:13164 ChiTaRS:CNBP EMBL:AK298154
IPI:IPI00977873 SMR:B4DP17 STRING:B4DP17 Ensembl:ENST00000500450
UCSC:uc011bku.2 Uniprot:B4DP17
Length = 160
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 81 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 115
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 21/48 (43%), Positives = 27/48 (56%)
Query: 60 SGRCFNCGIDGHWARDCKAGDWKNK---------CYRCGERGHIERNC 98
S CF CG GHWAR+C G + + CYRCGE GH+ ++C
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRDICYRCGESGHLAKDC 50
Score = 113 (44.8 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 57 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 100
Score = 112 (44.5 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 53 GRGPPP-GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
GRG G C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 26 GRGMRSRGRDICYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 75
Score = 111 (44.1 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 101 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 136
Score = 105 (42.0 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 119 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 154
>UNIPROTKB|E2RPD7 [details] [associations]
symbol:CNBP "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047065 OMA:CPNGQGG EMBL:AAEX03012021
UniGene:Cfa.4499 ProteinModelPortal:E2RPD7 PRIDE:E2RPD7
Ensembl:ENSCAFT00000006937 NextBio:20852160 Uniprot:E2RPD7
Length = 179
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 100 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 134
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 76 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 119
Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKE-PKR 94
Score = 111 (44.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 120 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 155
Score = 105 (42.0 bits), Expect = 0.00018, P = 0.00018
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 138 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 173
>UNIPROTKB|F8WFK2 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
RGD:621807 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00510000047065
IPI:IPI00201505 ProteinModelPortal:F8WFK2 SMR:F8WFK2
Ensembl:ENSRNOT00000013884 Uniprot:F8WFK2
Length = 179
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 100 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 134
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 76 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 119
Score = 112 (44.5 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKE-PKR 94
Score = 111 (44.1 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 120 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 155
Score = 105 (42.0 bits), Expect = 0.00018, P = 0.00018
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 138 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 173
>UNIPROTKB|F1N8C2 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS GeneTree:ENSGT00510000047065
IPI:IPI00582111 EMBL:AADN02013931 Ensembl:ENSGALT00000036274
ArrayExpress:F1N8C2 Uniprot:F1N8C2
Length = 171
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 92 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 126
Score = 113 (44.8 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 68 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 111
Score = 111 (44.1 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 112 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 147
Score = 108 (43.1 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 48 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 86
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 130 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 165
>UNIPROTKB|Q3T0Q6 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9913 "Bos taurus" [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0006351 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
OMA:FQFMSSS EMBL:BC102298 IPI:IPI00697831 RefSeq:NP_001029396.1
UniGene:Bt.9541 ProteinModelPortal:Q3T0Q6 STRING:Q3T0Q6
PRIDE:Q3T0Q6 Ensembl:ENSBTAT00000016130 GeneID:504831
KEGG:bta:504831 CTD:7555 GeneTree:ENSGT00510000047065
HOVERGEN:HBG000397 InParanoid:Q3T0Q6 OrthoDB:EOG45HRZN
NextBio:20866851 Uniprot:Q3T0Q6
Length = 170
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 91 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 125
Score = 113 (44.8 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 67 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 110
Score = 111 (44.1 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 111 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 146
Score = 108 (43.1 bits), Expect = 4.8e-05, P = 4.8e-05
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 47 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 85
Score = 105 (42.0 bits), Expect = 0.00013, P = 0.00013
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 129 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 164
>UNIPROTKB|P62633 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=ISS] [GO:0005829 "cytosol" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=TAS]
[GO:0006695 "cholesterol biosynthetic process" evidence=TAS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=TAS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0005783 GO:GO:0005829
GO:GO:0005634 GO:GO:0046872 GO:GO:0003677 GO:GO:0008284
EMBL:CH471052 GO:GO:0008270 GO:GO:0045944 GO:GO:0003700
GO:GO:0006351 GO:GO:0006695 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250 CTD:7555
HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:M28372 EMBL:U19765
EMBL:AY329622 EMBL:AK054592 EMBL:DQ092367 EMBL:DQ091187
EMBL:AK314380 EMBL:BT019613 EMBL:AC108673 EMBL:AC135587
EMBL:BC000288 EMBL:BC014911 EMBL:BC093058 IPI:IPI00430812
IPI:IPI00430813 IPI:IPI00430814 IPI:IPI00895911 IPI:IPI00967344
PIR:A32760 RefSeq:NP_001120665.1 RefSeq:NP_001120666.1
RefSeq:NP_001120668.1 RefSeq:NP_003409.1 UniGene:Hs.518249
ProteinModelPortal:P62633 SMR:P62633 IntAct:P62633 STRING:P62633
PhosphoSite:P62633 DMDM:50401852 PaxDb:P62633 PRIDE:P62633
DNASU:7555 Ensembl:ENST00000422453 Ensembl:ENST00000446936
Ensembl:ENST00000451728 Ensembl:ENST00000502976
Ensembl:ENST00000504813 GeneID:7555 KEGG:hsa:7555 UCSC:uc003elq.4
UCSC:uc003elr.4 GeneCards:GC03M128886 HGNC:HGNC:13164 MIM:116955
MIM:602668 neXtProt:NX_P62633 Orphanet:606 PharmGKB:PA37737
InParanoid:P62633 PhylomeDB:P62633 ChiTaRS:CNBP GenomeRNAi:7555
NextBio:29559 ArrayExpress:P62633 Bgee:P62633 CleanEx:HS_CNBP
Genevestigator:P62633 GermOnline:ENSG00000169714 Uniprot:P62633
Length = 177
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00017, P = 0.00017
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>UNIPROTKB|Q4R501 [details] [associations]
symbol:Q4R501 "Brain cDNA, clone: QnpA-14556, similar to
human zinc finger protein 9 (a cellular retroviral nucleicacid
binding protein) (ZNF9)," species:9541 "Macaca fascicularis"
[GO:0005634 "nucleus" evidence=ISS] [GO:0005783 "endoplasmic
reticulum" evidence=ISS] [GO:0005829 "cytosol" evidence=ISS]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISS] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=ISS]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0005783 GO:GO:0005829 GO:GO:0005634 GO:GO:0046872
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOVERGEN:HBG000397 EMBL:AB169743
EMBL:AB174174 ProteinModelPortal:Q4R501 SMR:Q4R501 PRIDE:Q4R501
Uniprot:Q4R501
Length = 177
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00017, P = 0.00017
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>UNIPROTKB|Q5R5R5 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9601 "Pongo abelii" [GO:0005634 "nucleus" evidence=ISS]
[GO:0005783 "endoplasmic reticulum" evidence=ISS] [GO:0005829
"cytosol" evidence=ISS] [GO:0008284 "positive regulation of cell
proliferation" evidence=ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0003677 GO:GO:0008284 GO:GO:0008270
GO:GO:0045944 GO:GO:0006351 Gene3D:4.10.60.10 SUPFAM:SSF57756
KO:K09250 CTD:7555 GeneTree:ENSGT00510000047065 HOVERGEN:HBG000397
OMA:CPNGQGG EMBL:CR860791 RefSeq:NP_001126703.1 UniGene:Pab.18652
ProteinModelPortal:Q5R5R5 SMR:Q5R5R5 PRIDE:Q5R5R5
Ensembl:ENSPPYT00000015613 GeneID:100173703 KEGG:pon:100173703
InParanoid:Q5R5R5 Uniprot:Q5R5R5
Length = 177
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00017, P = 0.00017
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>MGI|MGI:88431 [details] [associations]
symbol:Cnbp "cellular nucleic acid binding protein"
species:10090 "Mus musculus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IDA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
MGI:MGI:88431 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 ChiTaRS:CNBP EMBL:L12693 EMBL:Z11870
EMBL:X63866 EMBL:Z11871 EMBL:U20326 EMBL:AY176064 EMBL:AK075760
EMBL:AK078427 EMBL:BC058723 IPI:IPI00137229 IPI:IPI00330767
IPI:IPI00454151 PIR:I48297 PIR:I48298 PIR:I49259
RefSeq:NP_001103215.1 RefSeq:NP_038521.1 UniGene:Mm.290251
ProteinModelPortal:P53996 SMR:P53996 IntAct:P53996 STRING:P53996
PhosphoSite:P53996 PaxDb:P53996 PRIDE:P53996
Ensembl:ENSMUST00000032138 Ensembl:ENSMUST00000113619 GeneID:12785
KEGG:mmu:12785 InParanoid:P53996 OMA:CPNGQGG NextBio:282182
Bgee:P53996 CleanEx:MM_CNBP Genevestigator:P53996
GermOnline:ENSMUSG00000030057 Uniprot:P53996
Length = 178
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 99 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 133
Score = 113 (44.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 75 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 118
Score = 111 (44.1 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 119 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 154
Score = 108 (43.1 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE-DEACYNCGRGGHIAKDCKE-PKR 93
Score = 105 (42.0 bits), Expect = 0.00017, P = 0.00017
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 137 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 172
>RGD|621807 [details] [associations]
symbol:Cnbp "CCHC-type zinc finger, nucleic acid binding protein"
species:10116 "Rattus norvegicus" [GO:0003697 "single-stranded DNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=ISO;ISS] [GO:0005783
"endoplasmic reticulum" evidence=ISO;ISS] [GO:0005829 "cytosol"
evidence=ISO;ISS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=ISO;ISS] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=ISO;ISS] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO;ISS] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 RGD:621807 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0006351
GO:GO:0003697 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:D45254 EMBL:AF242550 EMBL:AY329624
EMBL:AB158421 EMBL:AB158422 EMBL:BC062225 IPI:IPI00201505
PIR:JC2512 RefSeq:NP_072120.1 UniGene:Rn.6187
ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00017, P = 0.00017
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>UNIPROTKB|P62634 [details] [associations]
symbol:Cnbp "Cellular nucleic acid-binding protein"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISS] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 RGD:621807 GO:GO:0005783 GO:GO:0005829 GO:GO:0005634
GO:GO:0046872 GO:GO:0008284 GO:GO:0008270 GO:GO:0003727
GO:GO:0045944 GO:GO:0006351 GO:GO:0003697 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262 KO:K09250
CTD:7555 HOVERGEN:HBG000397 OrthoDB:EOG45HRZN EMBL:D45254
EMBL:AF242550 EMBL:AY329624 EMBL:AB158421 EMBL:AB158422
EMBL:BC062225 IPI:IPI00201505 PIR:JC2512 RefSeq:NP_072120.1
UniGene:Rn.6187 ProteinModelPortal:P62634 SMR:P62634 STRING:P62634
PhosphoSite:P62634 PRIDE:P62634 GeneID:64530 KEGG:rno:64530
InParanoid:P62634 NextBio:613366 ArrayExpress:P62634
Genevestigator:P62634 GermOnline:ENSRNOG00000010239 Uniprot:P62634
Length = 177
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 98 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 132
Score = 113 (44.8 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 74 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 117
Score = 111 (44.1 bits), Expect = 2.2e-05, P = 2.2e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 118 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 153
Score = 108 (43.1 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 54 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 92
Score = 105 (42.0 bits), Expect = 0.00017, P = 0.00017
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 136 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 171
>UNIPROTKB|F1NI84 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0008284
GO:GO:0008270 GO:GO:0045944 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AADN02013931
IPI:IPI00819060 Ensembl:ENSGALT00000008010 ArrayExpress:F1NI84
Uniprot:F1NI84
Length = 105
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 53 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 87
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 29 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 72
Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 19/37 (51%), Positives = 24/37 (64%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C++CG GH +DC K KCYRCGE GH+ NC
Sbjct: 73 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINC 105
Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH A+DC + + CY CG GHI ++C+ PK+
Sbjct: 9 CYRCGESGHLAKDCDLQE--DACYNCGRGGHIAKDCKE-PKR 47
>UNIPROTKB|O42395 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9031 "Gallus gallus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0008284
"positive regulation of cell proliferation" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0005783
GO:GO:0005829 GO:GO:0005634 GO:GO:0046872 GO:GO:0003677
GO:GO:0008284 GO:GO:0008270 GO:GO:0045944 GO:GO:0006351
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 CTD:7555 HOVERGEN:HBG000397
OrthoDB:EOG45HRZN EMBL:AF004942 IPI:IPI00582111 RefSeq:NP_990238.1
UniGene:Gga.3333 ProteinModelPortal:O42395 STRING:O42395
GeneID:395731 KEGG:gga:395731 InParanoid:O42395 NextBio:20815799
ArrayExpress:O42395 Uniprot:O42395
Length = 172
Score = 129 (50.5 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC D + KCY CGE GHI+++C
Sbjct: 93 CYNCGKPGHLARDCDHAD-EQKCYSCGEFGHIQKDC 127
Score = 113 (44.8 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG+ GH+ R+C ++ ++
Sbjct: 69 CYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHADEQ 112
Score = 111 (44.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
+C++CG GH +DC K KCYRCGE GH+ NC +
Sbjct: 113 KCYSCGEFGHIQKDCT----KVKCYRCGETGHVAINCSKT 148
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C N CYRCGE GH+ R C
Sbjct: 131 KCYRCGETGHVAINCSKTSEVN-CYRCGESGHLAREC 166
>UNIPROTKB|E1C8Y9 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0043274 "phospholipase binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892 OMA:SPPPRRX
EMBL:AADN02044872 IPI:IPI00580212 RefSeq:NP_001182483.1
UniGene:Gga.13500 ProteinModelPortal:E1C8Y9 SMR:E1C8Y9 PRIDE:E1C8Y9
Ensembl:ENSGALT00000000735 GeneID:419815 KEGG:gga:419815
NextBio:20822814 Uniprot:E1C8Y9
Length = 164
Score = 111 (44.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/58 (50%), Positives = 33/58 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + SR RGPPP GR
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 184 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 229
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>UNIPROTKB|Q3SZR8 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9913 "Bos taurus" [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 HSSP:Q07955
EMBL:BC102735 IPI:IPI00689088 RefSeq:NP_001029872.1 UniGene:Bt.4741
ProteinModelPortal:Q3SZR8 SMR:Q3SZR8 STRING:Q3SZR8 PRIDE:Q3SZR8
Ensembl:ENSBTAT00000051953 GeneID:540276 KEGG:bta:540276 CTD:6428
InParanoid:Q3SZR8 KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12
NextBio:20878535 Uniprot:Q3SZR8
Length = 164
Score = 111 (44.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/58 (50%), Positives = 33/58 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + SR RGPPP GR
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 184 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 229
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>UNIPROTKB|F2Z4N6 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:AAEX03008285 RefSeq:XP_532124.3 UniGene:Cfa.246
ProteinModelPortal:F2Z4N6 SMR:F2Z4N6 PRIDE:F2Z4N6
Ensembl:ENSCAFT00000002186 GeneID:403687 KEGG:cfa:403687
NextBio:20817191 Uniprot:F2Z4N6
Length = 164
Score = 111 (44.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/58 (50%), Positives = 33/58 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + SR RGPPP GR
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 184 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 229
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>UNIPROTKB|P84103 [details] [associations]
symbol:SRSF3 "Serine/arginine-rich splicing factor 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0043274 "phospholipase binding"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0006406 GO:GO:0000398 Reactome:REACT_1788
GO:GO:0006369 GO:GO:0031124 HOVERGEN:HBG107480 Reactome:REACT_78
EMBL:Z85986 eggNOG:NOG302928 CTD:6428 KO:K12892 OMA:SPPPRRX
OrthoDB:EOG4VDQ12 EMBL:L10838 EMBL:AF107405 EMBL:BT007017
EMBL:BC000914 EMBL:BC069018 IPI:IPI00010204 PIR:I54089
RefSeq:NP_003008.1 UniGene:Hs.405144 PDB:2I2Y PDB:2I38 PDBsum:2I2Y
PDBsum:2I38 ProteinModelPortal:P84103 SMR:P84103 IntAct:P84103
MINT:MINT-5002707 STRING:P84103 PhosphoSite:P84103 DMDM:51338672
PaxDb:P84103 PRIDE:P84103 DNASU:6428 Ensembl:ENST00000373715
GeneID:6428 KEGG:hsa:6428 UCSC:uc003omj.3 GeneCards:GC06P036562
HGNC:HGNC:10785 HPA:CAB012986 MIM:603364 neXtProt:NX_P84103
PharmGKB:PA35701 InParanoid:P84103 PhylomeDB:P84103 ChiTaRS:SRSF3
EvolutionaryTrace:P84103 GenomeRNAi:6428 NextBio:24965
ArrayExpress:P84103 Bgee:P84103 CleanEx:HS_SFRS3
Genevestigator:P84103 GermOnline:ENSG00000112081 Uniprot:P84103
Length = 164
Score = 111 (44.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/58 (50%), Positives = 33/58 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + SR RGPPP GR
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 184 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 229
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>MGI|MGI:98285 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008286 "insulin receptor signaling pathway" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0043274 "phospholipase binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98285 GO:GO:0008286
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG302928 GeneTree:ENSGT00700000104452 CTD:6428 KO:K12892
OMA:SPPPRRX EMBL:X53824 EMBL:X91656 EMBL:AK011657 EMBL:AK078891
EMBL:AK134177 EMBL:AK135298 EMBL:AK145089 EMBL:AK145715
EMBL:AK146010 EMBL:AK146253 EMBL:AK150912 EMBL:AK153209
EMBL:BC068111 EMBL:BC071196 EMBL:BC083316 IPI:IPI00129323
IPI:IPI00221826 PIR:S14016 RefSeq:NP_038691.1 UniGene:Mm.473125
UniGene:Mm.6787 ProteinModelPortal:P84104 SMR:P84104 IntAct:P84104
STRING:P84104 PhosphoSite:P84104 PaxDb:P84104 PRIDE:P84104
Ensembl:ENSMUST00000037776 Ensembl:ENSMUST00000130216 GeneID:20383
KEGG:mmu:20383 InParanoid:P84104 NextBio:298302 Bgee:P84104
CleanEx:MM_SFRS3 Genevestigator:P84104
GermOnline:ENSMUSG00000071172 Uniprot:P84104
Length = 164
Score = 111 (44.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/58 (50%), Positives = 33/58 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + SR RGPPP GR
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 184 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 229
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>RGD|1309233 [details] [associations]
symbol:Srsf3 "serine/arginine-rich splicing factor 3"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA;ISO] [GO:0043274
"phospholipase binding" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309233 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG107480 EMBL:CH473988 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 HOGENOM:HOG000276234 CTD:6428
KO:K12892 OMA:SPPPRRX OrthoDB:EOG4VDQ12 EMBL:DQ480748
IPI:IPI00372826 RefSeq:NP_001041372.1 UniGene:Rn.9002 SMR:Q0ZFS8
STRING:Q0ZFS8 Ensembl:ENSRNOT00000000627 GeneID:361814
KEGG:rno:361814 UCSC:RGD:1309233 InParanoid:Q0ZFS8 NextBio:677698
Genevestigator:Q0ZFS8 Uniprot:Q0ZFS8
Length = 164
Score = 111 (44.1 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 29/58 (50%), Positives = 33/58 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + SR RGPPP GR
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 184 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 229
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>ZFIN|ZDB-GENE-030131-7336 [details] [associations]
symbol:srsf5a "serine/arginine-rich splicing
factor 5a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-7336 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:FEDSRNH EMBL:FP103009
EMBL:AY398417 IPI:IPI00503585 RefSeq:NP_957161.1 UniGene:Dr.76029
STRING:Q6TGT9 Ensembl:ENSDART00000043312 GeneID:335396
KEGG:dre:335396 CTD:335396 InParanoid:Q6TGT9 OrthoDB:EOG461459
NextBio:20810825 Uniprot:Q6TGT9
Length = 259
Score = 118 (46.6 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 32/79 (40%), Positives = 42/79 (53%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 60
+K F FVEF D RDADDA Y LNG+++ R+ +E A SR GRG PG
Sbjct: 35 LKNGFGFVEFDDYRDADDAVYELNGKELCSERVTIEHAR--------SRR--GRGGGPGM 84
Query: 61 GRCFNCGIDGHWARDCKAG 79
G F+ G+ R ++G
Sbjct: 85 GGRFSPRFGGY--RQSRSG 101
Score = 52 (23.4 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 14/48 (29%), Positives = 23/48 (47%)
Query: 187 QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 234
+D++ R R ++ S S SP +SRSP + R+ PE+
Sbjct: 183 EDRKRNRSRSRSRSRSSSRSRSP-SRSRSPERGSKRSRSRSLSRTPEK 229
Score = 50 (22.7 bits), Expect = 3.0e-08, Sum P(2) = 3.0e-08
Identities = 16/33 (48%), Positives = 18/33 (54%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RSPS R R GS+ S S R SR+P
Sbjct: 197 RSSSRSRSPS-RSRSPERGSKRSRS-RSLSRTP 227
>ZFIN|ZDB-GENE-030131-7782 [details] [associations]
symbol:cnbpb "CCHC-type zinc finger, nucleic acid
binding protein b" species:7955 "Danio rerio" [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-7782 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 GeneTree:ENSGT00510000047065
InterPro:IPR025836 Pfam:PF14392 EMBL:CR855375 IPI:IPI00862287
Ensembl:ENSDART00000104520 Bgee:E7FCQ0 Uniprot:E7FCQ0
Length = 243
Score = 130 (50.8 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 26/55 (47%), Positives = 33/55 (60%)
Query: 53 GRGPPPGSGR---CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
GRG G G+ C+ CG GH ARDC+ + + CY CG GHI R+C+ PKK
Sbjct: 107 GRGKGRGRGKDLFCYRCGEPGHVARDCERTE--DACYNCGRGGHISRDCKE-PKK 158
Score = 118 (46.6 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQ 99
C+NCG GH ARDC + + KCY CG GHI++ C+
Sbjct: 164 CYNCGKAGHMARDCDHAN-EQKCYSCGGFGHIQKGCE 199
Score = 118 (46.6 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 60 SGRCFNCGIDGHWARDC-KAGDWKNK---------CYRCGERGHIERNCQNS 101
S CF CG GHW ++C AG + K CYRCGE GH+ R+C+ +
Sbjct: 85 SNECFGCGRTGHWIKNCPNAGRGRGKGRGRGKDLFCYRCGEPGHVARDCERT 136
Score = 112 (44.5 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNS 101
C+NCG GH +RDCK + + CY CG+ GH+ R+C ++
Sbjct: 140 CYNCGRGGHISRDCKEPKKEREQVCYNCGKAGHMARDCDHA 180
>ASPGD|ASPL0000028407 [details] [associations]
symbol:AN5111 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0000747 "conjugation with
cellular fusion" evidence=IEA] [GO:0031137 "regulation of
conjugation with cellular fusion" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 EMBL:BN001305 Gene3D:4.10.60.10
SUPFAM:SSF57756 OMA:FQFMSSS EnsemblFungi:CADANIAT00003095
Uniprot:C8VEX3
Length = 171
Score = 126 (49.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 20/43 (46%), Positives = 25/43 (58%)
Query: 56 PPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
P G+ C+NCG GH +R+C + CYRCG GHI R C
Sbjct: 22 PKKGTPTCYNCGGQGHVSRECTVAPKEKSCYRCGAVGHISREC 64
Score = 124 (48.7 bits), Expect = 5.3e-08, P = 5.3e-08
Identities = 21/41 (51%), Positives = 25/41 (60%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK 103
C++CG GH ARDC G KCY CGE GH+ R+C K
Sbjct: 113 CYSCGGFGHMARDCTQGQ---KCYNCGETGHVSRDCPTEAK 150
Score = 118 (46.6 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 24/46 (52%), Positives = 28/46 (60%)
Query: 61 GR-CFNCGIDGHWARDC-KAGDWKNKCYRCGERGHIERNCQNSPKK 104
GR CFNCG H ARDC K G CY CG +GH+ R C +PK+
Sbjct: 5 GRVCFNCGEATHQARDCPKKGT--PTCYNCGGQGHVSRECTVAPKE 48
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 62 RCFNCGIDGHWARDCKA-GDWKNKCYRCGERGHIERNCQNS 101
+C+NCG GH +RDC + CY+C + GHI+ C N+
Sbjct: 131 KCYNCGETGHVSRDCPTEAKGERVCYQCKQPGHIQSACPNN 171
Score = 105 (42.0 bits), Expect = 0.00014, P = 0.00014
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 58 PGSGRCFNCGIDGHWARDC-KAGDWKN-----KCYRCGERGHIERNC 98
P C+ CG GH +R+C +AG+ + +CY+CG GHI RNC
Sbjct: 46 PKEKSCYRCGAVGHISRECPQAGENERPAGGQECYKCGRVGHIARNC 92
>ZFIN|ZDB-GENE-040426-2824 [details] [associations]
symbol:srsf6a "serine/arginine-rich splicing
factor 6a" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-2824 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL954866 IPI:IPI00931275 Ensembl:ENSDART00000020251
ArrayExpress:E7FFF7 Bgee:E7FFF7 Uniprot:E7FFF7
Length = 379
Score = 115 (45.5 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+++ G R++VE A
Sbjct: 33 LKNGYGFVEFEDTRDADDAVYELNGKELCGERVMVEHA 70
Score = 59 (25.8 bits), Expect = 5.9e-08, Sum P(2) = 5.9e-08
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 182 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY-RSP 231
D +S S DR ++ S R +S SP+++ DG ++ RSP
Sbjct: 291 DRKSRSKSTSKVKSDRGRSKEKSVSKKSRSRSASPMENGDGERPKSASRSP 341
Score = 50 (22.7 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 18/45 (40%), Positives = 21/45 (46%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 227
ER RSPSP QA S+Y SP SRS A + R+
Sbjct: 332 ERPKSASRSPSP----QAEQSKYK-SPDRHSRSRSKSASRSKSRS 371
Score = 42 (19.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 194 PRDRRQANGSEYSGSPRGKSRS 215
PR RR +GS R +SRS
Sbjct: 187 PRRRRSYSGSRSRSRSRRRSRS 208
Score = 41 (19.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 190 RSPSPRDRRQANGSEY-SGSPRGKSRS 215
RS S R R +G + S SP KSRS
Sbjct: 234 RSRSGRRSRSKSGHKSRSKSPSSKSRS 260
Score = 41 (19.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S RR + S S R SRS
Sbjct: 191 RSYSGSRSRSRSRRRSRSRSRRSSRSRSNSRS 222
Score = 38 (18.4 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS +RS S R RR + S S R +SRS
Sbjct: 199 RSRSRRRSRS-RSRRSSRSRSNSRS-RSRSRS 228
Score = 35 (17.4 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 14/35 (40%), Positives = 17/35 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEY---SGSPRGKSRS 215
RS + RS S R R + S S S R +SRS
Sbjct: 201 RSRRRSRSRSRRSSRSRSNSRSRSRSRSRRHRSRS 235
>ZFIN|ZDB-GENE-030131-5045 [details] [associations]
symbol:cnbpa "CCHC-type zinc finger, nucleic acid
binding protein a" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0060322 "head development" evidence=IMP]
[GO:0014029 "neural crest formation" evidence=IMP] [GO:0014036
"neural crest cell fate specification" evidence=IMP] [GO:0051216
"cartilage development" evidence=IMP] [GO:0003697 "single-stranded
DNA binding" evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
ZFIN:ZDB-GENE-030131-5045 GO:GO:0046872 GO:GO:0008270 GO:GO:0003723
GO:GO:0003697 GO:GO:0051216 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 HOVERGEN:HBG000397 GO:GO:0060322 GO:GO:0014036
InterPro:IPR025836 Pfam:PF14392 EMBL:AY228240 IPI:IPI00481422
UniGene:Dr.31379 STRING:Q801Z9 InParanoid:Q801Z9
ArrayExpress:Q801Z9 Uniprot:Q801Z9
Length = 163
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 53 GRGPPPGSGR---CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
GRG G G+ C+ CG GH ARDC+ + + CY C GHI R+C+ PKK
Sbjct: 27 GRGRGRGRGKDLFCYRCGEQGHIARDCEQTE--DACYNCHRSGHISRDCKE-PKK 78
Score = 117 (46.2 bits), Expect = 5.0e-07, P = 5.0e-07
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 60 SGRCFNCGIDGHWARDC-KAGDWKNK---------CYRCGERGHIERNCQNS 101
+ CF CG GHW ++C AG + + CYRCGE+GHI R+C+ +
Sbjct: 5 TSECFGCGRSGHWIKNCPNAGRGRGRGRGRGKDLFCYRCGEQGHIARDCEQT 56
Score = 107 (42.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+NCG GH ARDC + + KCY CG GH ++ C
Sbjct: 84 CYNCGKAGHVARDCDHAN-EQKCYSCGGFGHFQKLC 118
Score = 107 (42.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNS 101
C+NC GH +RDCK + + CY CG+ GH+ R+C ++
Sbjct: 60 CYNCHRSGHISRDCKEPKKEREQCCYNCGKAGHVARDCDHA 100
>WB|WBGene00019537 [details] [associations]
symbol:K08D12.3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0000003 "reproduction" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 GO:GO:0009792 GO:GO:0040007
GO:GO:0002119 GO:GO:0046872 GO:GO:0008270 GO:GO:0040011
GO:GO:0000003 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS
GeneTree:ENSGT00510000047065 EMBL:FO081610 GeneID:176979
KEGG:cel:CELE_K08D12.3 UCSC:K08D12.3a.1 CTD:176979 NextBio:894830
RefSeq:NP_741323.1 ProteinModelPortal:Q966I7 SMR:Q966I7
STRING:Q966I7 PRIDE:Q966I7 EnsemblMetazoa:K08D12.3a.1
EnsemblMetazoa:K08D12.3a.2 WormBase:K08D12.3a InParanoid:Q966I7
ArrayExpress:Q966I7 Uniprot:Q966I7
Length = 151
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 53 GRGPPPGSGRCFNCGIDGHWARDC-KAGDWKNK-CYRCGERGHIERNC 98
G G G +C+NCG GH +R+C ++G + K CY+C E GHI R+C
Sbjct: 99 GEGRSFGGQKCYNCGRSGHISRECTESGSAEEKRCYQCQETGHISRDC 146
Score = 102 (41.0 bits), Expect = 0.00014, P = 0.00014
Identities = 22/59 (37%), Positives = 29/59 (49%)
Query: 53 GRGPPPGSGRCFNCGIDGHWARDC-KAGDWKNK---------CYRCGERGHIERNCQNS 101
GR G C+NC GH++RDC K G + CY CG RGH R+C ++
Sbjct: 27 GRRGGGGGSTCYNCQETGHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSA 85
>UNIPROTKB|A7MB38 [details] [associations]
symbol:SFRS4 "SFRS4 protein" species:9913 "Bos taurus"
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:DAAA02006322 EMBL:BC151318 IPI:IPI00692721
RefSeq:NP_001094701.1 UniGene:Bt.28464 STRING:A7MB38
Ensembl:ENSBTAT00000037984 GeneID:614310 KEGG:bta:614310
InParanoid:A7MB38 NextBio:20899050 Uniprot:A7MB38
Length = 493
Score = 120 (47.3 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 33 LKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 51 (23.0 bits), Expect = 9.1e-08, Sum P(2) = 9.1e-08
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 182 DERSPQDQRSPSPRDRRQA---NGSEYSGSPRGKSRSPV-DDADGPEDRNY-RSPPEE 234
+ RS RS S R R++ + SG G S+ DDAD + R+ RS +E
Sbjct: 356 ESRSRSRSRSKSERSRKRGGKRDSKSGSGGGSGSSKKKKKDDADRSQSRSRSRSGSKE 413
Score = 49 (22.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP +S S R R Q G+E + +SRS
Sbjct: 289 RSPSRHKSKS-RSRSQERGAEEARGSASRSRS 319
Score = 49 (22.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 15/48 (31%), Positives = 27/48 (56%)
Query: 184 RSPQDQ-RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS +++ RSPS +D+ ++ S + R KS+ P ++ DR +S
Sbjct: 241 RSKKEKSRSPS-KDKSRSR-SRSADKRRSKSKDPAEEKVQNSDRTGKS 286
Score = 44 (20.5 bits), Expect = 4.8e-07, Sum P(2) = 4.8e-07
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 184 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 227
+S RS S R + ++ S S + KSRSP D R+
Sbjct: 217 KSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKDKSRSRSRS 261
Score = 42 (19.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 42 (19.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 17/53 (32%), Positives = 24/53 (45%)
Query: 184 RSPQDQRSPS--PRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 234
RS +RS S P + + N S+ +G + KSRSP R+ EE
Sbjct: 260 RSADKRRSKSKDPAEEKVQN-SDRTG--KSKSRSPSRHKSKSRSRSQERGAEE 309
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRS 215
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 39 (18.8 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 13/52 (25%), Positives = 20/52 (38%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEE 234
R + + S ++ SGS R KSRS + RSP ++
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKD 253
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 183 ERSPQDQRSPSPRDRRQANG-----SEYSGSPRGKSRSPVDD 219
ER ++ R + R R + S G R +SRS D
Sbjct: 304 ERGAEEARGSASRSRSKEKSLRKSRSRSQGGSRSRSRSKSKD 345
Score = 37 (18.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 236
E+S + RS S R + S+ +G+ RS + R+ + G
Sbjct: 321 EKSLRKSRSRSQGGSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRG 374
Score = 34 (17.0 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 184 RSPQDQRS-PS-PRDRRQANGSEYSGSPRGKSRS 215
RS + +S P+ P + R + S R KSRS
Sbjct: 442 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRS 475
>UNIPROTKB|F1PTE0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431
OMA:KPRSSHR EMBL:AAEX03013949 RefSeq:XP_003639908.1
Ensembl:ENSCAFT00000014759 GeneID:403667 KEGG:cfa:403667
Uniprot:F1PTE0
Length = 344
Score = 118 (46.6 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+++ G R+IVE A
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
Score = 50 (22.7 bits), Expect = 9.9e-08, Sum P(2) = 9.9e-08
Identities = 15/46 (32%), Positives = 21/46 (45%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRS 230
P+ R R R ++ E S S R +SRSP ++ G RS
Sbjct: 251 PKSDRGSRSRSRSRSKEYEKSRSRSRSRSRSPKENGKGDIKSKSRS 296
Score = 44 (20.5 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 14/54 (25%), Positives = 22/54 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEENG 236
RS + R + ++ GS R +SRS + R+ P+ENG
Sbjct: 233 RSRSRSKGRKSRSKSKSKPKSDRGSRSRSRSRSKEYEKSRSRSRSRSRSPKENG 286
Score = 41 (19.5 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 37 (18.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS SP + S P+ SRS
Sbjct: 295 RSRSQSRSNSPLPAPPSKARSVSPPPKRASRS 326
Score = 35 (17.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 192 PSPRDRRQANGSEYSGSPRGKSRS 215
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 215
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>TAIR|locus:2133249 [details] [associations]
symbol:SR34b "Serine/Arginine-Rich Protein Splicing
Factor 34b" species:3702 "Arabidopsis thaliana" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0016926 "protein desumoylation" evidence=RCA] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K12890 IPI:IPI00522961 RefSeq:NP_567235.3
UniGene:At.3885 ProteinModelPortal:F4JHI7 SMR:F4JHI7
EnsemblPlants:AT4G02430.2 GeneID:828027 KEGG:ath:AT4G02430
OMA:VQFEDPR PhylomeDB:F4JHI7 Uniprot:F4JHI7
Length = 278
Score = 111 (44.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 25/52 (48%), Positives = 29/52 (55%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSR-EYLGRG 55
+AFVEF D RDADDA Y +G D DG + VE A +R Y GRG
Sbjct: 47 YAFVEFEDARDADDAIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRG 98
Score = 57 (25.1 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RSP + R++ S SPR +SRS
Sbjct: 226 RSRSKSRSPKAKSLRRSPAKSTSRSPRSRSRS 257
Score = 52 (23.4 bits), Expect = 4.4e-07, Sum P(2) = 4.4e-07
Identities = 21/54 (38%), Positives = 23/54 (42%)
Query: 182 DERSPQDQRSPSP-RDR-RQANGSEYSGSPRGKSRSPVDDA--DGPEDRNYRSP 231
D RSP RS S R R R + S R KSRSP + P RSP
Sbjct: 198 DSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKSTSRSP 251
Score = 49 (22.3 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 17/53 (32%), Positives = 26/53 (49%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSP-RGKSRSPV-DDADGPEDRNYRSPPEEN 235
S +D RSPS R R + SP R +SRS + P+ ++ R P ++
Sbjct: 195 SRRDSRSPS-RGRSYSKSRSRGRSPSRSRSRSRSRSKSRSPKAKSLRRSPAKS 246
Score = 47 (21.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 13/28 (46%), Positives = 15/28 (53%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRG 211
RSP S SPR R ++ S SPRG
Sbjct: 241 RSPAKSTSRSPRSRSRSKSR--SLSPRG 266
>UNIPROTKB|F6T1J1 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich-splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AL357500 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AL590729 HGNC:HGNC:10786 ChiTaRS:SRSF4
IPI:IPI00908618 ProteinModelPortal:F6T1J1 SMR:F6T1J1
Ensembl:ENST00000546138 UCSC:uc010ofy.2 ArrayExpress:F6T1J1
Bgee:F6T1J1 Uniprot:F6T1J1
Length = 158
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 33 LKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
>UNIPROTKB|I3LAE9 [details] [associations]
symbol:LOC100523801 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0043274 "phospholipase binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104452
Ensembl:ENSSSCT00000030748 OMA:RSRSMYR Uniprot:I3LAE9
Length = 164
Score = 111 (44.1 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 29/58 (50%), Positives = 33/58 (56%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + SR RGPPP GR
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 38 (18.4 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 184 RSPQD---QRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
R P+D +RSP PR R R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPRRRYLERACLEPSDFRSLSRDRRRERSLSRERNHK 146
>UNIPROTKB|F1S4B2 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
OMA:RKSYTRS Ensembl:ENSSSCT00000002574 Uniprot:F1S4B2
Length = 263
Score = 117 (46.2 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
Score = 45 (20.9 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
+S RSP P ++ Q GS R +SRS
Sbjct: 224 KSRSVSRSPVP-EKSQKRGSSSRSRSRSRSRS 254
Score = 36 (17.7 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 190 RSPSPRDR---RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS S R + R + S R SRSPV + + RS
Sbjct: 203 RSRSRRSKSYSRSRSRSRSRSKSRSVSRSPVPEKSQKRGSSSRS 246
>UNIPROTKB|E1BRL9 [details] [associations]
symbol:LOC100859609 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0000166 GO:GO:0008270
Gene3D:3.30.70.330 GO:GO:0003676 Gene3D:4.10.60.10
GeneTree:ENSGT00700000104452 EMBL:AADN02041253 EMBL:AADN02041254
EMBL:AADN02041255 EMBL:AADN02041256 IPI:IPI00593697
ProteinModelPortal:E1BRL9 Ensembl:ENSGALT00000022437
ArrayExpress:E1BRL9 Uniprot:E1BRL9
Length = 226
Score = 112 (44.5 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 29/73 (39%), Positives = 36/73 (49%)
Query: 5 FAFVEFSDPRDADDARYSLNG-RDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRC 63
FAFVEF DPRDA S + + GSR+ VE + R R P + RC
Sbjct: 49 FAFVEFEDPRDAXXXXASKPLLKVICGSRVRVEVSTGMPRRSRYDRPP-ARRPFDPNDRC 107
Query: 64 FNCGIDGHWARDC 76
+ CG GH+A DC
Sbjct: 108 YECGEKGHYAYDC 120
Score = 50 (22.7 bits), Expect = 1.8e-07, Sum P(2) = 1.8e-07
Identities = 16/46 (34%), Positives = 20/46 (43%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
SP+ RS SPR R +GS R +SRS P +S
Sbjct: 168 SPRRSRSVSPR--RSRSGSLKRSRSRSRSRSRSRSVTWPRSSRSKS 211
Score = 45 (20.9 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 184 RSPQDQRSPS-PRDRRQANGSEYSGSPRGKSRSP 216
RS +RS S R R ++ + S R KSRSP
Sbjct: 181 RSGSLKRSRSRSRSRSRSRSVTWPRSSRSKSRSP 214
Score = 42 (19.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 185 SPQDQRSPSPRDRRQANGS 203
S RSPSP+ R +GS
Sbjct: 207 SRSKSRSPSPKRSRSPSGS 225
Score = 34 (17.0 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 184 RSPQDQRSPSP 194
RSP +RS SP
Sbjct: 212 RSPSPKRSRSP 222
>UNIPROTKB|J9NRQ2 [details] [associations]
symbol:ZCCHC13 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GeneTree:ENSGT00510000047065 EMBL:AAEX03026520
Ensembl:ENSCAFT00000049751 OMA:EEQKCYS Uniprot:J9NRQ2
Length = 146
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+ CG GH ARDC + + KCY CGE GHI+++C
Sbjct: 92 CYTCGRPGHLARDCDRQE-EQKCYSCGEYGHIQKDC 126
Score = 106 (42.4 bits), Expect = 7.5e-06, P = 7.5e-06
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C++CG GH +DC + KCYRCGE GH+ NC
Sbjct: 112 KCYSCGEYGHIQKDCT----QVKCYRCGETGHVAINC 144
Score = 104 (41.7 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 53 GRGPPPGSGR----CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
GRG P S C+ CG GH A++C ++ CY CG GHI ++C PK+
Sbjct: 34 GRGSPCSSTNLPDICYRCGKSGHHAKNCDL--LEDICYNCGRSGHIAKDCIE-PKR 86
Score = 103 (41.3 bits), Expect = 5.3e-05, P = 5.3e-05
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 63 CFNCGIDGHWARDC--KAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DC + + CY CG GH+ R+C ++
Sbjct: 68 CYNCGRSGHIAKDCIEPKREREQCCYTCGRPGHLARDCDRQEEQ 111
>DICTYBASE|DDB_G0293328 [details] [associations]
symbol:DDB_G0293328 "Cellular nucleic acid-binding
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 dictyBase:DDB_G0293328
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AAFI02000201
RefSeq:XP_629203.1 ProteinModelPortal:Q54BY8 STRING:Q54BY8
EnsemblProtists:DDB0191881 GeneID:8629162 KEGG:ddi:DDB_G0293328
InParanoid:Q54BY8 OMA:CKEVGHI ProtClustDB:PTZ00368 Uniprot:Q54BY8
Length = 131
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 102
+C+ C GH+ARDC+ G NKCY CG GHI ++C SP
Sbjct: 61 KCYQCNGFGHFARDCRRGR-DNKCYNCGGLGHISKDCP-SP 99
Score = 95 (38.5 bits), Expect = 0.00017, P = 0.00017
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 62 RCFNCGIDGHWARDCKA----GDWKN--KCYRCGERGHIERNC 98
+C+NCG GH ++DC + G ++ KCY+C + GHI + C
Sbjct: 82 KCYNCGGLGHISKDCPSPSTRGQGRDAAKCYKCNQPGHIAKAC 124
>TAIR|locus:2046638 [details] [associations]
symbol:RSZ22a "RS-containing zinc finger protein 22a"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829 "cytosol"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0046872 GO:GO:0008270 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006954 Gene3D:4.10.60.10
HSSP:P19339 HOGENOM:HOG000276234 eggNOG:NOG315521 KO:K12896
EMBL:AK117883 EMBL:BT005216 IPI:IPI00534944 PIR:E84638
RefSeq:NP_180035.1 UniGene:At.39134 ProteinModelPortal:Q9SJA6
SMR:Q9SJA6 IntAct:Q9SJA6 STRING:Q9SJA6 PaxDb:Q9SJA6 PRIDE:Q9SJA6
EnsemblPlants:AT2G24590.1 GeneID:816995 KEGG:ath:AT2G24590
TAIR:At2g24590 InParanoid:Q9SJA6 OMA:EELPYAN PhylomeDB:Q9SJA6
ProtClustDB:CLSN2683045 Genevestigator:Q9SJA6 Uniprot:Q9SJA6
Length = 196
Score = 95 (38.5 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYL--GRGPPPGSGR 62
+AF++F D RDA DA ++G++ G R+ R GRG +
Sbjct: 40 YAFLDFEDSRDARDAIREVDGKN--GWRVEQSHNRGGGGGRGGGRGGGDGGRGRGGSDLK 97
Query: 63 CFNCGIDGHWARDCKA 78
C+ CG GH+AR+C++
Sbjct: 98 CYECGESGHFARECRS 113
Score = 72 (30.4 bits), Expect = 1.9e-07, Sum P(2) = 1.9e-07
Identities = 23/52 (44%), Positives = 26/52 (50%)
Query: 184 RSPQDQRSPSPRDRRQAN-GSEYSGSPRGKSRSPVDD-ADGPEDRNY-RSPP 232
RS RSP PR R+ G S SPR +S P + P RNY RSPP
Sbjct: 122 RSRSRSRSP-PRYRKSPTYGGRRSYSPRARSPPPPRRRSPSPRGRNYSRSPP 172
Score = 71 (30.1 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 20/48 (41%), Positives = 22/48 (45%)
Query: 53 GRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 100
G G G GR G DG R G KCY CGE GH R C++
Sbjct: 73 GGGGGRGGGRG---GGDGGRGR----GGSDLKCYECGESGHFARECRS 113
Score = 38 (18.4 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 16/45 (35%), Positives = 19/45 (42%)
Query: 195 RDRRQANGSEYSGSPRGKSRSPVDDADGPE---DRNY----RSPP 232
R+ R GS R +SRSP P R+Y RSPP
Sbjct: 109 RECRSRGGSGGRRRSRSRSRSPPRYRKSPTYGGRRSYSPRARSPP 153
>UNIPROTKB|J9PA38 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6431 EMBL:AAEX03013949
GeneID:403667 KEGG:cfa:403667 RefSeq:XP_003639909.1
Ensembl:ENSCAFT00000044157 Uniprot:J9PA38
Length = 135
Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+++ G R+IVE A
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
>UNIPROTKB|F1MXY9 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich-splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 IPI:IPI00687852
UniGene:Bt.38355 OMA:KPRSSHR EMBL:DAAA02036693
ProteinModelPortal:F1MXY9 Ensembl:ENSBTAT00000011240 Uniprot:F1MXY9
Length = 345
Score = 118 (46.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+++ G R+IVE A
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
Score = 46 (21.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGS---PRGKSRSPVDDADGPEDRNYRS 230
P+ R R R ++ EY S R +SRSP ++ G RS
Sbjct: 251 PKSDRGSRSRSRSRSK-DEYEKSRSRSRSRSRSPKENGKGDIKSKSRS 297
Score = 41 (19.5 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 38 (18.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS SP + S P+ SRS
Sbjct: 296 RSRSQSRSDSPLPAPPSKARSVSPPPKRASRS 327
Score = 35 (17.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 192 PSPRDRRQANGSEYSGSPRGKSRS 215
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 215
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>UNIPROTKB|Q3B7L6 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9913 "Bos taurus" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 HSSP:Q01085
OrthoDB:EOG41C6X9 EMBL:BC107553 IPI:IPI00687852
RefSeq:NP_001030349.1 UniGene:Bt.38355 ProteinModelPortal:Q3B7L6
STRING:Q3B7L6 PRIDE:Q3B7L6 GeneID:507828 KEGG:bta:507828 CTD:6431
InParanoid:Q3B7L6 NextBio:20868237 Uniprot:Q3B7L6
Length = 345
Score = 118 (46.6 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+++ G R+IVE A
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
Score = 46 (21.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 15/48 (31%), Positives = 21/48 (43%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGS---PRGKSRSPVDDADGPEDRNYRS 230
P+ R R R ++ EY S R +SRSP ++ G RS
Sbjct: 251 PKSDRGSRSRSRSRSK-DEYEKSRSRSRSRSRSPKENGKGDIKSKSRS 297
Score = 41 (19.5 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 38 (18.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS SP + S P+ SRS
Sbjct: 296 RSRSQSRSDSPLPAPPSKARSVSPPPKRASRS 327
Score = 35 (17.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 192 PSPRDRRQANGSEYSGSPRGKSRS 215
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 215
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>POMBASE|SPBC11C11.08 [details] [associations]
symbol:srp1 "SR family protein, human SRFS2 ortholog
Srp1" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=TAS] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC11C11.08 GO:GO:0005634 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0003723
GO:GO:0045292 EMBL:U66833 PIR:T48696 RefSeq:NP_596398.1
ProteinModelPortal:Q10193 STRING:Q10193 PRIDE:Q10193
EnsemblFungi:SPBC11C11.08.1 GeneID:2539818 KEGG:spo:SPBC11C11.08
eggNOG:NOG77895 OMA:DCYRYSK OrthoDB:EOG473T21 NextBio:20800967
Uniprot:Q10193
Length = 275
Score = 88 (36.0 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 19/38 (50%), Positives = 28/38 (73%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVD-GSRII-VEFA 38
R FAFVE+ D RDA+DA Y ++GR ++ G ++ VE+A
Sbjct: 47 RPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWA 84
Score = 86 (35.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 26/50 (52%), Positives = 31/50 (62%)
Query: 182 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 231
DERS D+RS SPR R + S SP G+SRSP D P+ RN+RSP
Sbjct: 131 DERS--DRRSMSPRYRSR------SRSPDGRSRSPDYDRRSPK-RNHRSP 171
>ZFIN|ZDB-GENE-040426-1467 [details] [associations]
symbol:srsf1b "serine/arginine-rich splicing
factor 1b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040426-1467 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
EMBL:AL929224 EMBL:CU928208 IPI:IPI00506820
Ensembl:ENSDART00000110646 ArrayExpress:F1QXQ1 Bgee:F1QXQ1
Uniprot:F1QXQ1
Length = 258
Score = 112 (44.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF DPRDA+DA Y +G D DG R+ VEF
Sbjct: 55 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 87
Score = 51 (23.0 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 16/35 (45%), Positives = 18/35 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRSPV 217
RS + RS S RR YS PR +SRSPV
Sbjct: 213 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRSPV 245
Score = 47 (21.6 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 19/51 (37%), Positives = 21/51 (41%)
Query: 184 RSPQDQRSPS---PRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 231
RSP RS S R R ++N S SPR SP P RSP
Sbjct: 197 RSPSYGRSRSRSRSRSRSRSNSRSRSYSPRRSRGSP---RYSPRHSRSRSP 244
>UNIPROTKB|Q06A99 [details] [associations]
symbol:SRSF4 "SFRS4" species:9823 "Sus scrofa" [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 CTD:6429 OMA:REHAKSE
OrthoDB:EOG41C6X9 EMBL:FP236541 EMBL:DQ972965 RefSeq:NP_001070684.1
UniGene:Ssc.11128 Ensembl:ENSSSCT00000003983 GeneID:768101
KEGG:ssc:768101 Uniprot:Q06A99
Length = 491
Score = 120 (47.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 33 LKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 46 (21.3 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY-RSPPEE 234
E S RS S +R + GS+ + +D D + R+ RS +E
Sbjct: 359 EESRSRSRSRSKSERSRKRGSKRDSKSSSSKKKKKEDTDRSQSRSRSRSGSKE 411
Score = 42 (19.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 41 (19.5 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS +RS S +D+ + + + KSRSP
Sbjct: 254 RSADKRRSKS-KDQAEEKVQNSDNTGKSKSRSP 285
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRS 215
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS + RS RR + S R +SRS D
Sbjct: 314 RSKEKSRSQEKSLRRSRSRSRGGSRSRSRSRSKSKD 349
Score = 35 (17.4 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S R+ S R +SRS
Sbjct: 338 RSRSRSRSKSKDKRKGRKRSREESRSRSRSRS 369
Score = 35 (17.4 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS + S S R +GS R +S+S
Sbjct: 207 RSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQS 238
Score = 35 (17.4 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 10/48 (20%), Positives = 18/48 (37%)
Query: 187 QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 234
+D+R R R ++ S S +SR D + + E+
Sbjct: 348 KDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKSSSSKKKKKED 395
Score = 34 (17.0 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 184 RSPQDQRS-PS-PRDRRQANGSEYSGSPRGKSRS 215
RS + +S P+ P + R + S R KSRS
Sbjct: 440 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRS 473
>UNIPROTKB|Q5ZLF9 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 OrthoDB:EOG4RJG2V EMBL:AADN02003156
EMBL:AJ719775 IPI:IPI00651527 UniGene:Gga.4502 STRING:Q5ZLF9
Ensembl:ENSGALT00000032618 Uniprot:Q5ZLF9
Length = 123
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
>UNIPROTKB|B4DJK0 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AL157789
UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5 EMBL:AL355837
EMBL:AK296113 IPI:IPI01025047 ProteinModelPortal:B4DJK0 SMR:B4DJK0
STRING:B4DJK0 Ensembl:ENST00000555349 ArrayExpress:B4DJK0
Bgee:B4DJK0 Uniprot:B4DJK0
Length = 124
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
>UNIPROTKB|B4DUA4 [details] [associations]
symbol:SRSF5 "cDNA FLJ57437, highly similar to Splicing
factor, arginine/serine-rich 5" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
EMBL:AL157789 UniGene:Hs.632326 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 EMBL:AK300560 IPI:IPI01009006
ProteinModelPortal:B4DUA4 SMR:B4DUA4 STRING:B4DUA4
Ensembl:ENST00000451983 Ensembl:ENST00000553369
Ensembl:ENST00000554021 UCSC:uc021rvj.1 ArrayExpress:B4DUA4
Bgee:B4DUA4 Uniprot:B4DUA4
Length = 138
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
>UNIPROTKB|G3V5K8 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich-splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0051726 "regulation
of cell cycle" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0051726 EMBL:AL157789 HGNC:HGNC:10787 ChiTaRS:SRSF5
EMBL:AL355837 ProteinModelPortal:G3V5K8 SMR:G3V5K8
Ensembl:ENST00000553548 ArrayExpress:G3V5K8 Bgee:G3V5K8
Uniprot:G3V5K8
Length = 99
Score = 117 (46.2 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
>UNIPROTKB|Q13247 [details] [associations]
symbol:SRSF6 "Serine/arginine-rich splicing factor 6"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CH471077 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295 EMBL:AL031681
KO:K12893 ChiTaRS:SRSF6 OrthoDB:EOG41C6X9 CTD:6431 EMBL:U30883
EMBL:U30828 EMBL:U30829 EMBL:AK300411 EMBL:BC006832 IPI:IPI00012345
IPI:IPI00018203 IPI:IPI00215879 PIR:S59043 RefSeq:NP_006266.2
UniGene:Hs.6891 ProteinModelPortal:Q13247 SMR:Q13247 IntAct:Q13247
MINT:MINT-1474667 STRING:Q13247 PhosphoSite:Q13247 DMDM:20981728
PaxDb:Q13247 PRIDE:Q13247 DNASU:6431 Ensembl:ENST00000244020
Ensembl:ENST00000483871 GeneID:6431 KEGG:hsa:6431 UCSC:uc002xki.3
GeneCards:GC20P042087 HGNC:HGNC:10788 HPA:CAB034889 HPA:HPA029005
MIM:601944 neXtProt:NX_Q13247 PharmGKB:PA35704 InParanoid:Q13247
OMA:KPRSSHR PhylomeDB:Q13247 GenomeRNAi:6431 NextBio:24979
Bgee:Q13247 CleanEx:HS_SFRS6 Genevestigator:Q13247
GermOnline:ENSG00000124193 Uniprot:Q13247
Length = 344
Score = 118 (46.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+++ G R+IVE A
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
Score = 45 (20.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 14/46 (30%), Positives = 20/46 (43%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRS 230
P+ R R ++ EY S R +SRSP ++ G RS
Sbjct: 251 PKSDRGSHSHSRSRSK-DEYEKSRSRSRSRSPKENGKGDIKSKSRS 295
Score = 42 (19.8 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 221
P RS SP +R + S + +SRS D
Sbjct: 309 PSKARSVSPPPKRATSRSRSRSRSKSRSRSRSSSRD 344
Score = 42 (19.8 bits), Expect = 6.6e-07, Sum P(2) = 6.6e-07
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEENG 236
RS + R + ++ GS +SRS D+ + R+ P+ENG
Sbjct: 233 RSRSRSKGRKSRSKSKSKPKSDRGSHSHSRSRSK-DEYEKSRSRSRSRSPKENG 285
Score = 41 (19.5 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 36 (17.7 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
E+S RS SP++ NG G + KSRS
Sbjct: 270 EKSRSRSRSRSPKE----NGK---GDIKSKSRS 295
Score = 35 (17.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 192 PSPRDRRQANGSEYSGSPRGKSRS 215
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 215
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>TAIR|locus:2124799 [details] [associations]
symbol:RSZ22 "RS-containing zinc finger protein 22"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0005829
"cytosol" evidence=RCA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005737
EMBL:CP002687 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
Gene3D:4.10.60.10 HSSP:P19339 GO:GO:0000398 EMBL:AL161579
EMBL:AL031004 HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033586 EMBL:AJ002378 EMBL:AY065387
EMBL:AY117206 EMBL:AY086525 IPI:IPI00542071 PIR:T05112 PIR:T52627
RefSeq:NP_001078474.1 RefSeq:NP_194886.1 UniGene:At.23104
ProteinModelPortal:O81126 SMR:O81126 IntAct:O81126 STRING:O81126
PRIDE:O81126 EnsemblPlants:AT4G31580.1 EnsemblPlants:AT4G31580.2
GeneID:829285 KEGG:ath:AT4G31580 TAIR:At4g31580 InParanoid:O81126
OMA:FARECRN PhylomeDB:O81126 Genevestigator:O81126 Uniprot:O81126
Length = 200
Score = 104 (41.7 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 5 FAFVEFSDPRDADDARYSLNGRD---VDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 61
+AF++F DPRDA DA +L+G++ V+ S E GRG GS
Sbjct: 40 YAFLDFEDPRDARDAIRALDGKNGWRVEQSHNRGERGGGGRGGDRGGGGG-GRGGRGGSD 98
Query: 62 -RCFNCGIDGHWARDCK 77
+C+ CG GH+AR+C+
Sbjct: 99 LKCYECGETGHFARECR 115
Score = 83 (34.3 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 54 RGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 100
RG G GR + G G R + G KCY CGE GH R C+N
Sbjct: 72 RGERGGGGRGGDRG-GGGGGRGGRGGS-DLKCYECGETGHFARECRN 116
Score = 57 (25.1 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 21/54 (38%), Positives = 26/54 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPV---DDADGP-EDRNY-RSPP 232
RS R+P PR RR + S SPR +S P + P R+Y RSPP
Sbjct: 124 RSKSRSRTP-PRYRRSPSYGRRSYSPRARSPPPPRRRSPSPPPARGRSYSRSPP 176
Score = 54 (24.1 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSP---RGKSRSPVDDADGPEDR 226
P +RSPSP R G YS SP R + P + +G ++R
Sbjct: 155 PPRRRSPSPPPAR---GRSYSRSPPPYRAREEVPYANGNGLKER 195
>MGI|MGI:98287 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611 "response to
wounding" evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0050733 "RS domain binding" evidence=IPI] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98287 GO:GO:0009611 GO:GO:0006355 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003723 EMBL:CH466590 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12893 CTD:6430
EMBL:AF020308 EMBL:AK146624 EMBL:AC125092 EMBL:BC082593
IPI:IPI00314709 IPI:IPI00830743 RefSeq:NP_001073162.1
RefSeq:NP_001073163.1 RefSeq:NP_033185.2 UniGene:Mm.43331
ProteinModelPortal:O35326 DIP:DIP-48724N STRING:O35326
PhosphoSite:O35326 PaxDb:O35326 PRIDE:O35326
Ensembl:ENSMUST00000094693 Ensembl:ENSMUST00000110352
Ensembl:ENSMUST00000110356 GeneID:20384 KEGG:mmu:20384
UCSC:uc007obn.1 NextBio:298306 Genevestigator:O35326
GermOnline:ENSMUSG00000021134 Uniprot:O35326
Length = 269
Score = 117 (46.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
Score = 42 (19.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 218
+S RSP P ++ Q GS S R KS + VD
Sbjct: 223 KSRSGSRSPVP-EKSQKRGS----SSRSKSPASVD 252
Score = 36 (17.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 190 RSPSPRDR---RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS S R + R + S R SRSPV + + RS
Sbjct: 202 RSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGSSSRS 245
>RGD|3664 [details] [associations]
symbol:Srsf5 "serine/arginine-rich splicing factor 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005730 "nucleolus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0009611
"response to wounding" evidence=ISO] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0050733 "RS domain binding" evidence=ISO]
[GO:0051726 "regulation of cell cycle" evidence=IEP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611 GO:GO:0005730
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0051726
eggNOG:COG0724 HOVERGEN:HBG002295 KO:K12893 CTD:6430
OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683 EMBL:BC058479 EMBL:L33267
IPI:IPI00201490 IPI:IPI00231768 PIR:B47112 RefSeq:NP_001182434.1
RefSeq:NP_001182435.1 RefSeq:NP_062130.2 UniGene:Rn.54448
ProteinModelPortal:Q09167 SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167
PRIDE:Q09167 Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 117 (46.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
Score = 42 (19.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 218
+S RSP P ++ Q GS S R KS + VD
Sbjct: 223 KSRSGSRSPVP-EKSQKRGS----SSRSKSPASVD 252
Score = 36 (17.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 190 RSPSPRDR---RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS S R + R + S R SRSPV + + RS
Sbjct: 202 RSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGSSSRS 245
>UNIPROTKB|Q09167 [details] [associations]
symbol:Srsf5 "Serine/arginine-rich splicing factor 5"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:3664 GO:GO:0005737 GO:GO:0009611
GO:GO:0005730 GO:GO:0006355 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0051726 eggNOG:COG0724 HOVERGEN:HBG002295
KO:K12893 CTD:6430 OrthoDB:EOG4RJG2V EMBL:L13635 EMBL:AF020683
EMBL:BC058479 EMBL:L33267 IPI:IPI00201490 IPI:IPI00231768
PIR:B47112 RefSeq:NP_001182434.1 RefSeq:NP_001182435.1
RefSeq:NP_062130.2 UniGene:Rn.54448 ProteinModelPortal:Q09167
SMR:Q09167 STRING:Q09167 PhosphoSite:Q09167 PRIDE:Q09167
Ensembl:ENSRNOT00000058290 GeneID:29667 KEGG:rno:29667
UCSC:RGD:3664 NextBio:609979 ArrayExpress:Q09167
Genevestigator:Q09167 GermOnline:ENSRNOG00000005513 Uniprot:Q09167
Length = 269
Score = 117 (46.2 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
Score = 42 (19.8 bits), Expect = 3.5e-07, Sum P(2) = 3.5e-07
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 218
+S RSP P ++ Q GS S R KS + VD
Sbjct: 223 KSRSGSRSPVP-EKSQKRGS----SSRSKSPASVD 252
Score = 36 (17.7 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 190 RSPSPRDR---RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS S R + R + S R SRSPV + + RS
Sbjct: 202 RSRSRRSKSYSRSRSRSRSRSKSRSGSRSPVPEKSQKRGSSSRS 245
>RGD|1561347 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561347
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH473968
GeneTree:ENSGT00700000104103 KO:K12893 CTD:6429
RefSeq:NP_001102155.1 UniGene:Rn.63428 Ensembl:ENSRNOT00000013301
GeneID:362612 KEGG:rno:362612 OMA:KDRGETR NextBio:680578
Uniprot:G3V798
Length = 488
Score = 120 (47.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 33 LKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 45 (20.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEEN 235
R + + S ++ SGS R KSRS + RSP ++N
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDN 254
Score = 44 (20.5 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 231
RS RS S R R Q+ S S + KSRSP D + R+ RSP
Sbjct: 223 RSGSHSRSKS-RSRSQSR----SRSKKEKSRSPSKD-NKSRSRS-RSP 263
Score = 43 (20.2 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 184 RSPQDQ-RSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS +++ RSPS +D + + S R KS+ +D
Sbjct: 241 RSKKEKSRSPS-KDNKSRSRSRSPDKSRSKSKDHAED 276
Score = 42 (19.8 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRS 215
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 37 (18.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 187 QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDA 220
+D+R R R ++ S S R + S D+
Sbjct: 348 KDKRKGRKRSREESRSRSRSKSERSRKHSSKRDS 381
Score = 34 (17.0 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 227
RS + P + R + S + R +S+SP A R+
Sbjct: 439 RSTSKSKPSLPAESRSRSKS--ASKTRSRSKSPSRSASRSPSRS 480
>MGI|MGI:1890577 [details] [associations]
symbol:Srsf4 "serine/arginine-rich splicing factor 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1890577 GO:GO:0008380 GO:GO:0000166
GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0048025 eggNOG:COG0724 HOVERGEN:HBG002295 OrthoDB:EOG41C6X9
ChiTaRS:SRSF4 EMBL:BC019437 EMBL:AB041587 IPI:IPI00139364
UniGene:Mm.2478 ProteinModelPortal:Q8VE97 SMR:Q8VE97 STRING:Q8VE97
PhosphoSite:Q8VE97 PaxDb:Q8VE97 PRIDE:Q8VE97 CleanEx:MM_SFRS4
Genevestigator:Q8VE97 GermOnline:ENSMUSG00000028911 Uniprot:Q8VE97
Length = 489
Score = 120 (47.3 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 33 LKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 45 (20.9 bits), Expect = 3.7e-07, Sum P(2) = 3.7e-07
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEEN 235
R + + S ++ SGS R KSRS + RSP ++N
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDN 254
Score = 44 (20.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 231
RS RS S R R Q+ S S + KSRSP D + R+ RSP
Sbjct: 223 RSGSHSRSKS-RSRSQSR----SRSKKEKSRSPSKD-NKSRSRS-RSP 263
Score = 43 (20.2 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 184 RSPQDQ-RSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS +++ RSPS +D + + S R KS+ +D
Sbjct: 241 RSKKEKSRSPS-KDNKSRSRSRSPDKSRSKSKDHAED 276
Score = 42 (19.8 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRS 215
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/44 (22%), Positives = 17/44 (38%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDR 226
++ RSPS ++ ++ RG +A PE R
Sbjct: 393 KKDTDHSRSPSRSVSKEREHAKAESGQRGSRAEGESEAPNPEPR 436
Score = 35 (17.4 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 187 QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDA 220
+D+R R R ++ S S R + S D+
Sbjct: 348 KDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDS 381
Score = 34 (17.0 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 221
+ S RS S R R+ ++ + S S D D
Sbjct: 359 DESRSRSRSKSERSRKHSSKRDSKVSSSSSSSKKKKDTD 397
>UNIPROTKB|Q08170 [details] [associations]
symbol:SRSF4 "Serine/arginine-rich splicing factor 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000375 "RNA splicing, via transesterification reactions"
evidence=TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=TAS]
[GO:0006369 "termination of RNA polymerase II transcription"
evidence=TAS] [GO:0006406 "mRNA export from nucleus" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0031124 "mRNA 3'-end processing"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 EMBL:AL357500 GO:GO:0016607
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0048025 eggNOG:COG0724
GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78 HOVERGEN:HBG002295
EMBL:AL590729 KO:K12893 EMBL:L14076 EMBL:BT007415 EMBL:BC002781
EMBL:AC004236 IPI:IPI00000015 PIR:A48133 RefSeq:NP_005617.2
UniGene:Hs.469970 ProteinModelPortal:Q08170 SMR:Q08170
IntAct:Q08170 MINT:MINT-1410521 STRING:Q08170 PhosphoSite:Q08170
DMDM:20981726 PaxDb:Q08170 PeptideAtlas:Q08170 PRIDE:Q08170
DNASU:6429 Ensembl:ENST00000373795 GeneID:6429 KEGG:hsa:6429
UCSC:uc001bro.3 CTD:6429 GeneCards:GC01M029474 H-InvDB:HIX0160019
HGNC:HGNC:10786 HPA:HPA050975 MIM:601940 neXtProt:NX_Q08170
PharmGKB:PA35702 InParanoid:Q08170 OMA:REHAKSE OrthoDB:EOG41C6X9
PhylomeDB:Q08170 ChiTaRS:SRSF4 GenomeRNAi:6429 NextBio:24969
ArrayExpress:Q08170 Bgee:Q08170 CleanEx:HS_SFRS4
Genevestigator:Q08170 GermOnline:ENSG00000116350 Uniprot:Q08170
Length = 494
Score = 120 (47.3 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 23/38 (60%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 33 LKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 70
Score = 45 (20.9 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 14/53 (26%), Positives = 22/53 (41%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN-YRSPPEE 234
E S RS S +R + GS+ + +D D + R+ RS +E
Sbjct: 362 EESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKE 414
Score = 42 (19.8 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
++S SP + + S +G R KS+ ++
Sbjct: 245 EKSRSPSKEKSRSRSHSAGKSRSKSKDQAEE 275
Score = 42 (19.8 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S R+ + S S S KSRS
Sbjct: 189 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 220
Score = 42 (19.8 bits), Expect = 7.7e-07, Sum P(2) = 7.7e-07
Identities = 14/52 (26%), Positives = 20/52 (38%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEE 234
R + + S ++ SGS R KSRS + RSP +E
Sbjct: 202 RKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKE 253
Score = 40 (19.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRS 215
RS R R +GS S + +SRS
Sbjct: 197 RSRHSRKSRSRSGSSKSSHSKSRSRS 222
Score = 36 (17.7 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 14/44 (31%), Positives = 18/44 (40%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPE 233
RS R+ + S G R +SRS D + R RS E
Sbjct: 321 RSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRK-RSREE 363
Score = 35 (17.4 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S R+ S R +SRS
Sbjct: 341 RSRSRSRSKSKDKRKGRKRSREESRSRSRSRS 372
Score = 34 (17.0 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 184 RSPQDQRS-PS-PRDRRQANGSEYSGSPRGKSRS 215
RS + +S P+ P + R + S R KSRS
Sbjct: 443 RSRSNSKSKPNLPSESRSRSKSASKTRSRSKSRS 476
Score = 34 (17.0 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 13/83 (15%), Positives = 23/83 (27%)
Query: 187 QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENGXXXXXXXXXX 246
+D+R R R ++ S S +SR D + + E+
Sbjct: 351 KDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRS 410
Query: 247 XXXXXXXXXXXXNHGDPRGSESN 269
+ + RG N
Sbjct: 411 VSKEREHAKSESSQREGRGESEN 433
>UNIPROTKB|Q13243 [details] [associations]
symbol:SRSF5 "Serine/arginine-rich splicing factor 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0016607 "nuclear
speck" evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=TAS] [GO:0006369 "termination of RNA polymerase
II transcription" evidence=TAS] [GO:0006406 "mRNA export from
nucleus" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0031124 "mRNA
3'-end processing" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0051726 GO:GO:0006406 Reactome:REACT_1788 eggNOG:COG0724
GO:GO:0006376 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 KO:K12893 EMBL:U30826 EMBL:U30884 EMBL:U30827
EMBL:BT007089 EMBL:AK311805 EMBL:CR542167 EMBL:CR542182
EMBL:BX640605 EMBL:AB451250 EMBL:BC018823 EMBL:BC040209
EMBL:AF020307 IPI:IPI00012341 IPI:IPI00221286 IPI:IPI00413654
PIR:S59042 RefSeq:NP_001034554.1 RefSeq:NP_008856.2
UniGene:Hs.632326 ProteinModelPortal:Q13243 SMR:Q13243
IntAct:Q13243 MINT:MINT-1400587 STRING:Q13243 PhosphoSite:Q13243
DMDM:3929378 PaxDb:Q13243 PRIDE:Q13243 DNASU:6430
Ensembl:ENST00000394366 Ensembl:ENST00000553521
Ensembl:ENST00000553635 Ensembl:ENST00000557154 GeneID:6430
KEGG:hsa:6430 UCSC:uc001xll.3 CTD:6430 GeneCards:GC14P070234
HGNC:HGNC:10787 HPA:HPA043484 MIM:600914 neXtProt:NX_Q13243
PharmGKB:PA35703 InParanoid:Q13243 OMA:RKSYTRS OrthoDB:EOG4RJG2V
PhylomeDB:Q13243 ChiTaRS:SRSF5 GenomeRNAi:6430 NextBio:24973
ArrayExpress:Q13243 Bgee:Q13243 CleanEx:HS_SFRS5
Genevestigator:Q13243 GermOnline:ENSG00000100650 Uniprot:Q13243
Length = 272
Score = 117 (46.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
Score = 41 (19.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS R R R ++ S S R SRSPV + + RS
Sbjct: 203 RSRSRSRKSYSRSRSRSRSRSRSKS-RSVSRSPVPEKSQKRGSSSRS 248
Score = 40 (19.1 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 218
+S RSP P ++ Q GS S R KS + VD
Sbjct: 226 KSRSVSRSPVP-EKSQKRGS----SSRSKSPASVD 255
>UNIPROTKB|A6H7B7 [details] [associations]
symbol:SFRS5 "SFRS5 protein" species:9913 "Bos taurus"
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 KO:K12893
CTD:6430 OMA:RKSYTRS OrthoDB:EOG4RJG2V EMBL:DAAA02029514
EMBL:BC146185 IPI:IPI00687732 RefSeq:NP_001092399.1
UniGene:Bt.46079 STRING:A6H7B7 Ensembl:ENSBTAT00000015408
GeneID:510474 KEGG:bta:510474 InParanoid:A6H7B7 NextBio:20869461
Uniprot:A6H7B7
Length = 272
Score = 117 (46.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
Score = 41 (19.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 236
+S RSP P ++ Q GS S R KS + VD RS ++G
Sbjct: 224 KSRSVSRSPVP-EKSQKRGS----SSRSKSPASVDRQRSRSRSRSRSRSVDSG 271
Score = 39 (18.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS RS R ++ S S R SRSPV + + RS
Sbjct: 201 RSRSRSRSRKSYSRSRSRSRSRSKS-RSVSRSPVPEKSQKRGSSSRS 246
>UNIPROTKB|E2R8E5 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0009611 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6430 OMA:RKSYTRS EMBL:AAEX03005813 RefSeq:XP_867135.1
RefSeq:XP_867196.2 ProteinModelPortal:E2R8E5
Ensembl:ENSCAFT00000026276 GeneID:490754 KEGG:cfa:490754
NextBio:20863714 Uniprot:E2R8E5
Length = 272
Score = 117 (46.2 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 21/38 (55%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIEHA 72
Score = 41 (19.5 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 17/53 (32%), Positives = 23/53 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 236
+S RSP P ++ Q GS S R KS + VD RS ++G
Sbjct: 224 KSRSVSRSPVP-EKSQKRGS----SSRSKSPASVDRQRSRSRSRSRSRSVDSG 271
Score = 39 (18.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS RS R ++ S S R SRSPV + + RS
Sbjct: 201 RSRSRSRSRKSYSRSRSRSRSRSKS-RSVSRSPVPEKSQKRGSSSRS 246
>UNIPROTKB|Q06AA0 [details] [associations]
symbol:SRSF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
KO:K12893 CTD:6431 OMA:KPRSSHR EMBL:CU407126 EMBL:DQ972964
RefSeq:NP_001070685.1 UniGene:Ssc.9241 Ensembl:ENSSSCT00000008057
GeneID:768102 KEGG:ssc:768102 Uniprot:Q06AA0
Length = 345
Score = 118 (46.6 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 22/38 (57%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LNG+++ G R+IVE A
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHA 70
Score = 43 (20.2 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 14/47 (29%), Positives = 21/47 (44%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
+S + RS S R R + + R +SRSP ++ G RS
Sbjct: 252 KSDRGSRSRS-RSRSKDEYEKSRSRSRSRSRSPKENGKGDVKSKSRS 297
Score = 41 (19.5 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 37 (18.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS SP + S P+ SRS
Sbjct: 296 RSRSQSRSHSPLPAPPSKARSVSPPPKRASRS 327
Score = 35 (17.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 192 PSPRDRRQANGSEYSGSPRGKSRS 215
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 215
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>TAIR|locus:2195346 [details] [associations]
symbol:SR30 "Serine/Arginine-Rich Protein Splicing Factor
30" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0006376
"mRNA splice site selection" evidence=IMP] [GO:0048024 "regulation
of mRNA splicing, via spliceosome" evidence=TAS] [GO:0035061
"interchromatin granule" evidence=IDA] [GO:0016607 "nuclear speck"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
GO:GO:0016607 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
GO:GO:0048024 GO:GO:0006376 HOGENOM:HOG000276234 KO:K12890
GO:GO:0035061 EMBL:AY150486 EMBL:AJ131214 IPI:IPI00520604
RefSeq:NP_172386.3 UniGene:At.419 SMR:Q9XFR5 IntAct:Q9XFR5
STRING:Q9XFR5 EnsemblPlants:AT1G09140.1 GeneID:837433
KEGG:ath:AT1G09140 TAIR:At1g09140 InParanoid:Q9XFR5 OMA:YKLRVEH
ProtClustDB:CLSN2918467 Genevestigator:Q9XFR5 Uniprot:Q9XFR5
Length = 268
Score = 112 (44.5 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 22/34 (64%), Positives = 25/34 (73%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+AFVEF DPRDADDA Y +G D DG R+ VE A
Sbjct: 47 YAFVEFEDPRDADDAIYGRDGYDFDGCRLRVEIA 80
Score = 49 (22.3 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RSP D S S R R ++ G S S + +S SP
Sbjct: 192 RSPDD--SKSYRSRSRSRGPSCSYSSKSRSVSP 222
Score = 48 (22.0 bits), Expect = 6.8e-07, Sum P(2) = 6.8e-07
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANG-SEYSGSPRGKSRS 215
RS RS SPR R + S YS R +SRS
Sbjct: 218 RSVSPARSISPRSRPLSRSRSLYSSVSRSQSRS 250
>UNIPROTKB|F1RY92 [details] [associations]
symbol:SRSF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104452 OMA:SPPPRRX EMBL:CU633682
Ensembl:ENSSSCT00000001743 Uniprot:F1RY92
Length = 164
Score = 104 (41.7 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 28/58 (48%), Positives = 32/58 (55%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+G + G R+ VE + SR RGPPP GR
Sbjct: 48 FAFVEFEDPRDAADAVRELDGGTLCGCRVRVELSNGEKR----SRN---RGPPPSWGR 98
Score = 47 (21.6 bits), Expect = 5.6e-07, Sum P(2) = 5.6e-07
Identities = 17/50 (34%), Positives = 24/50 (48%)
Query: 184 RSPQD---QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 229
R P+D +RSP PR RR +S S R SR + +RN++
Sbjct: 98 RRPRDDYRRRSPPPR-RRSPRRRSFSRSRSRSLSRDRRRERSLSRERNHK 146
>WB|WBGene00004702 [details] [associations]
symbol:rsp-5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0048477 "oogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0005634 "nucleus" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 103 (41.3 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGS--RIIVEFA 38
MK FAFV+F D RDA+DA + L+G+ ++GS R++VE A
Sbjct: 33 MKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
Score = 57 (25.1 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 234
R+P +RS S RDR+++ S S R SRSPV ++ + SP +
Sbjct: 99 RTPPRRRSRS-RDRKRSRRSRSRSSSR--SRSPVRESRRRSESRSPSPKRD 146
Score = 56 (24.8 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 184 RSPQDQRSPSP-RDRRQANGSEYSGSPR-------GKSRSPVDDADGPEDRNYRSPPEEN 235
RS RS SP R+ R+ + S S SP+ +SRSP+ D R+ SPP+
Sbjct: 118 RSRSSSRSRSPVRESRRRSESR-SPSPKRDLKREASRSRSPLPAKDRSRTRS-GSPPKNG 175
Query: 236 G 236
G
Sbjct: 176 G 176
Score = 50 (22.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 195 RDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
R + + N S SPR +SRSP + P R RS
Sbjct: 73 RGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRS 108
Score = 45 (20.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +RS +P RR++ + S R +SRS
Sbjct: 92 RSPR-RRSRTP-PRRRSRSRDRKRSRRSRSRS 121
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYS--GSPRGKSRSPVDDADGPED 225
RS ++ R R + G +S GS R SRSP P+D
Sbjct: 167 RSGSPPKNGGDRKRSVSRGRSHSRDGSNRSVSRSP--SPGSPKD 208
Score = 43 (20.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 207 GSPRGK----SRSPVDDADGPEDRNYRSPP 232
G PRG SRSP + P R+ R+PP
Sbjct: 74 GKPRGNDRHGSRSPRRRSRSPRRRS-RTPP 102
Score = 38 (18.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +RS SPR R + PR +SRS
Sbjct: 85 RSPR-RRSRSPRRRSRT-------PPRRRSRS 108
Score = 38 (18.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 192 PSPRDRRQANGSEY-SGSPRGKSRSPVDDADGPEDR 226
P DR + S SPR +SR+P DR
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDR 111
>UNIPROTKB|Q10021 [details] [associations]
symbol:rsp-5 "Probable splicing factor,
arginine/serine-rich 5" species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=NAS] [GO:0008380 "RNA splicing"
evidence=NAS] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0048477
GO:GO:0003723 GO:GO:0040035 GO:GO:0000398 eggNOG:COG0724
EMBL:FO081595 GO:GO:0001703 GeneTree:ENSGT00700000104103 PIR:T16953
RefSeq:NP_495307.3 RefSeq:NP_495308.3 RefSeq:NP_495309.3
RefSeq:NP_495310.1 ProteinModelPortal:Q10021 SMR:Q10021
STRING:Q10021 PaxDb:Q10021 PRIDE:Q10021 EnsemblMetazoa:T28D9.2a
GeneID:174073 KEGG:cel:CELE_T28D9.2 UCSC:T28D9.2d CTD:174073
WormBase:T28D9.2a WormBase:T28D9.2b WormBase:T28D9.2c
WormBase:T28D9.2d InParanoid:Q10021 OMA:SKISVEW NextBio:882389
Uniprot:Q10021
Length = 208
Score = 103 (41.3 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 21/40 (52%), Positives = 30/40 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGS--RIIVEFA 38
MK FAFV+F D RDA+DA + L+G+ ++GS R++VE A
Sbjct: 33 MKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMA 72
Score = 57 (25.1 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEE 234
R+P +RS S RDR+++ S S R SRSPV ++ + SP +
Sbjct: 99 RTPPRRRSRS-RDRKRSRRSRSRSSSR--SRSPVRESRRRSESRSPSPKRD 146
Score = 56 (24.8 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 22/61 (36%), Positives = 30/61 (49%)
Query: 184 RSPQDQRSPSP-RDRRQANGSEYSGSPR-------GKSRSPVDDADGPEDRNYRSPPEEN 235
RS RS SP R+ R+ + S S SP+ +SRSP+ D R+ SPP+
Sbjct: 118 RSRSSSRSRSPVRESRRRSESR-SPSPKRDLKREASRSRSPLPAKDRSRTRS-GSPPKNG 175
Query: 236 G 236
G
Sbjct: 176 G 176
Score = 50 (22.7 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 195 RDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
R + + N S SPR +SRSP + P R RS
Sbjct: 73 RGKPRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRS 108
Score = 45 (20.9 bits), Expect = 9.8e-06, Sum P(2) = 9.8e-06
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +RS +P RR++ + S R +SRS
Sbjct: 92 RSPR-RRSRTP-PRRRSRSRDRKRSRRSRSRS 121
Score = 44 (20.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYS--GSPRGKSRSPVDDADGPED 225
RS ++ R R + G +S GS R SRSP P+D
Sbjct: 167 RSGSPPKNGGDRKRSVSRGRSHSRDGSNRSVSRSP--SPGSPKD 208
Score = 43 (20.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 207 GSPRGK----SRSPVDDADGPEDRNYRSPP 232
G PRG SRSP + P R+ R+PP
Sbjct: 74 GKPRGNDRHGSRSPRRRSRSPRRRS-RTPP 102
Score = 38 (18.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +RS SPR R + PR +SRS
Sbjct: 85 RSPR-RRSRSPRRRSRT-------PPRRRSRS 108
Score = 38 (18.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 192 PSPRDRRQANGSEY-SGSPRGKSRSPVDDADGPEDR 226
P DR + S SPR +SR+P DR
Sbjct: 76 PRGNDRHGSRSPRRRSRSPRRRSRTPPRRRSRSRDR 111
>UNIPROTKB|Q5R7H2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9601 "Pongo abelii" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG002295
GO:GO:0000395 KO:K12890 CTD:6426 EMBL:CR860145
RefSeq:NP_001126337.1 UniGene:Pab.7173 ProteinModelPortal:Q5R7H2
SMR:Q5R7H2 PRIDE:Q5R7H2 GeneID:100173318 KEGG:pon:100173318
InParanoid:Q5R7H2 Uniprot:Q5R7H2
Length = 248
Score = 113 (44.8 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 26/55 (47%), Positives = 29/55 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 59
FAFVEF DPRDA+DA Y +G D DG R+ VEF G G P G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 45 (20.9 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R+R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RNRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 215
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>UNIPROTKB|G4N4A8 [details] [associations]
symbol:MGG_05948 "Zinc knuckle domain-containing protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 EMBL:CM001233 GO:GO:0046872 GO:GO:0008270
GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
RefSeq:XP_003711783.1 ProteinModelPortal:G4N4A8
EnsemblFungi:MGG_05948T0 GeneID:2684027 KEGG:mgr:MGG_05948
Uniprot:G4N4A8
Length = 199
Score = 122 (48.0 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 53 GRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
G G G C++CG GH +RDC G +KCY CGE GH R+C
Sbjct: 130 GYGGGAGGKTCYSCGGVGHMSRDCVNG---SKCYNCGETGHFSRDC 172
Score = 117 (46.2 bits), Expect = 5.0e-06, P = 5.0e-06
Identities = 20/44 (45%), Positives = 27/44 (61%)
Query: 56 PPPGSGRCFNCGIDGHWARDCKAGDWKNK-CYRCGERGHIERNC 98
P G+ +C+NCG +GH +R C K CYRC + GHI R+C
Sbjct: 30 PNRGAAKCYNCGGEGHISRACPEEPKDQKICYRCSQPGHISRDC 73
Score = 114 (45.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 21/45 (46%), Positives = 22/45 (48%)
Query: 59 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPK 103
G C+ CG H ARDC KCY CG GHI R C PK
Sbjct: 12 GGRTCYTCGQPNHQARDCP-NRGAAKCYNCGGEGHISRACPEEPK 55
Score = 114 (45.2 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 51 YLGRGPPPGSGRCFNCGIDGHWARDC--KAGDWKNKCYRCGERGHIERNCQNS 101
++ R GS +C+NCG GH++RDC ++ + CY+C + GH++ C N+
Sbjct: 148 HMSRDCVNGS-KCYNCGETGHFSRDCSKRSTTGEKMCYKCQQPGHVQAECPNN 199
>SGD|S000005199 [details] [associations]
symbol:GIS2 "Translational activator for mRNAs with internal
ribosome entry sites" species:4932 "Saccharomyces cerevisiae"
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0042788 "polysomal ribosome" evidence=IPI] [GO:0045182
"translation regulator activity" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 SGD:S000005199 GO:GO:0046872
GO:GO:0008270 GO:GO:0003729 EMBL:BK006947 GO:GO:0045182
GO:GO:0042788 GO:GO:0003697 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0045727 EMBL:X96722 HOGENOM:HOG000186262
KO:K09250 GeneTree:ENSGT00510000047065 EMBL:Z71531 EMBL:AY558002
PIR:S63228 RefSeq:NP_014144.1 ProteinModelPortal:P53849 SMR:P53849
DIP:DIP-2669N IntAct:P53849 MINT:MINT-2732013 STRING:P53849
PaxDb:P53849 PeptideAtlas:P53849 EnsemblFungi:YNL255C GeneID:855466
KEGG:sce:YNL255C CYGD:YNL255c OMA:QCYNCGE OrthoDB:EOG4SJ8Q6
NextBio:979403 Genevestigator:P53849 GermOnline:YNL255C
Uniprot:P53849
Length = 153
Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 63 CFNCGIDGHWARDCKAGDWKN--KCYRCGERGHIERNCQN 100
C+ CG H A+DC D + KCY CG+ GH+ R+CQN
Sbjct: 94 CYKCGGPNHMAKDCMKEDGISGLKCYTCGQAGHMSRDCQN 133
Score = 103 (41.3 bits), Expect = 0.00012, P = 0.00012
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 60 SG-RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
SG +C+ CG GH +RDC+ D CY C E GHI ++C
Sbjct: 114 SGLKCYTCGQAGHMSRDCQ-ND--RLCYNCNETGHISKDC 150
>ZFIN|ZDB-GENE-040718-354 [details] [associations]
symbol:srsf5b "serine/arginine-rich splicing factor
5b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-354 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12893 OMA:RKSYTRS EMBL:AL928866
EMBL:BC075982 IPI:IPI00512023 RefSeq:NP_001002610.1
UniGene:Dr.80489 STRING:Q6DHJ0 Ensembl:ENSDART00000023580
GeneID:436883 KEGG:dre:436883 CTD:436883 InParanoid:Q6DHJ0
NextBio:20831311 Uniprot:Q6DHJ0
Length = 285
Score = 113 (44.8 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 20/38 (52%), Positives = 28/38 (73%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FVEF DPRDA+DA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFVEFDDPRDAEDAVYELDGKELCNERVTIEHA 72
Score = 47 (21.6 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 182 DERSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDA 220
+ SP PR R ++ S S R +SRSP D+
Sbjct: 244 ESASPPASAQHPPRSRSRSRSRSRSRSRSRSRSRSPSTDS 283
Score = 44 (20.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 15/49 (30%), Positives = 20/49 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 232
RS RS SP+ ++ R S SPV + P + SPP
Sbjct: 207 RSRSRSRSHSPKSHNRSRSRS-----RSASASPVRPKEAPRPES-ASPP 249
Score = 42 (19.8 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 232
RS SP +R ++ S SP +P ++ P + + PP
Sbjct: 209 RSRSRSHSPKSHNRSRSRSRSASASPVRPKEAPRPESASPP-ASAQHPP 256
>UNIPROTKB|Q0VCY7 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9913 "Bos taurus" [GO:0001701 "in utero embryonic
development" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0003723
"RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice site
recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0005654
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0000395 GeneTree:ENSGT00700000104103
KO:K12890 OrthoDB:EOG4WH8N5 EMBL:BC119930 IPI:IPI00692211
RefSeq:NP_001069862.1 UniGene:Bt.864 ProteinModelPortal:Q0VCY7
SMR:Q0VCY7 STRING:Q0VCY7 PRIDE:Q0VCY7 Ensembl:ENSBTAT00000049486
GeneID:615796 KEGG:bta:615796 CTD:6426 InParanoid:Q0VCY7
OMA:QVMEDLD NextBio:20899791 Uniprot:Q0VCY7
Length = 248
Score = 113 (44.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 26/55 (47%), Positives = 29/55 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 59
FAFVEF DPRDA+DA Y +G D DG R+ VEF G G P G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 215
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>UNIPROTKB|Q07955 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0050733 "RS domain binding" evidence=IEA]
[GO:0060048 "cardiac muscle contraction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA;TAS]
[GO:0000395 "mRNA 5'-splice site recognition" evidence=IDA]
[GO:0003723 "RNA binding" evidence=IDA;IPI] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006406 "mRNA export from nucleus"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0031124 "mRNA 3'-end
processing" evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 GO:GO:0016607 GO:GO:0001701
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471109
GO:GO:0060048 GO:GO:0006406 GO:GO:0071013 Reactome:REACT_1788
eggNOG:COG0724 GO:GO:0006369 GO:GO:0031124 Reactome:REACT_78
HOVERGEN:HBG002295 GO:GO:0000395 KO:K12890 PDB:3BEG PDBsum:3BEG
CTD:6426 OMA:QVMEDLD EMBL:M72709 EMBL:M69040 EMBL:AB062124
EMBL:AK312781 EMBL:BC010264 EMBL:BC033785 IPI:IPI00215884
IPI:IPI00218591 IPI:IPI00218592 PIR:A40040 PIR:B40040 PIR:C40040
RefSeq:NP_001071634.1 RefSeq:NP_008855.1 UniGene:Hs.68714 PDB:1X4A
PDB:2O3D PDBsum:1X4A PDBsum:2O3D ProteinModelPortal:Q07955
SMR:Q07955 DIP:DIP-2155N IntAct:Q07955 MINT:MINT-5000565
STRING:Q07955 PhosphoSite:Q07955 DMDM:730773 PaxDb:Q07955
PeptideAtlas:Q07955 PRIDE:Q07955 DNASU:6426 Ensembl:ENST00000258962
Ensembl:ENST00000581979 Ensembl:ENST00000582730 GeneID:6426
KEGG:hsa:6426 UCSC:uc002ivi.3 UCSC:uc002ivj.3 GeneCards:GC17M056079
H-InvDB:HIX0173551 HGNC:HGNC:10780 HPA:CAB013073 MIM:600812
neXtProt:NX_Q07955 PharmGKB:PA35696 InParanoid:Q07955
PhylomeDB:Q07955 ChiTaRS:SRSF1 EvolutionaryTrace:Q07955
GenomeRNAi:6426 NextBio:24955 PMAP-CutDB:Q07955 Bgee:Q07955
CleanEx:HS_SFRS1 Genevestigator:Q07955 GermOnline:ENSG00000136450
Uniprot:Q07955
Length = 248
Score = 113 (44.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 26/55 (47%), Positives = 29/55 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 59
FAFVEF DPRDA+DA Y +G D DG R+ VEF G G P G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 215
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>UNIPROTKB|Q3YLA6 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9823 "Sus scrofa" [GO:0005654 "nucleoplasm" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0000395 "mRNA 5'-splice
site recognition" evidence=ISS] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0060048 "cardiac
muscle contraction" evidence=IEA] [GO:0050733 "RS domain binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0000166
GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724 HOVERGEN:HBG002295
GO:GO:0000395 GeneTree:ENSGT00700000104103 KO:K12890
OrthoDB:EOG4WH8N5 CTD:6426 OMA:QVMEDLD EMBL:DQ098951 EMBL:DQ098950
RefSeq:NP_001033096.1 UniGene:Ssc.7576 HSSP:Q07955
ProteinModelPortal:Q3YLA6 SMR:Q3YLA6 STRING:Q3YLA6 PRIDE:Q3YLA6
Ensembl:ENSSSCT00000019188 GeneID:654327 KEGG:ssc:654327
Uniprot:Q3YLA6
Length = 248
Score = 113 (44.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 26/55 (47%), Positives = 29/55 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 59
FAFVEF DPRDA+DA Y +G D DG R+ VEF G G P G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 215
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>MGI|MGI:98283 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=ISO] [GO:0001701 "in utero embryonic development"
evidence=IMP] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IGI;IDA] [GO:0016607 "nuclear
speck" evidence=ISO;IDA] [GO:0050733 "RS domain binding"
evidence=IPI] [GO:0060048 "cardiac muscle contraction"
evidence=IGI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:98283 GO:GO:0005737
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 GO:GO:0071013 eggNOG:COG0724
EMBL:AL593853 HOVERGEN:HBG002295 GO:GO:0000395
GeneTree:ENSGT00700000104103 KO:K12890 CTD:6426 EMBL:AK018176
EMBL:AK078715 EMBL:AK150535 EMBL:CU406964 EMBL:BC046773
EMBL:BC058627 IPI:IPI00420807 IPI:IPI00457656 IPI:IPI00515505
PIR:S26404 RefSeq:NP_001071635.1 RefSeq:NP_775550.2
UniGene:Mm.391719 UniGene:Mm.478968 PDB:1X4C PDBsum:1X4C
ProteinModelPortal:Q6PDM2 SMR:Q6PDM2 DIP:DIP-48723N IntAct:Q6PDM2
STRING:Q6PDM2 PhosphoSite:Q6PDM2 PaxDb:Q6PDM2 PRIDE:Q6PDM2
Ensembl:ENSMUST00000079866 Ensembl:ENSMUST00000139129 GeneID:110809
KEGG:mmu:110809 UCSC:uc007kvc.1 UCSC:uc007kvd.1 InParanoid:B2KGJ5
EvolutionaryTrace:Q6PDM2 NextBio:364697 Bgee:Q6PDM2
CleanEx:MM_SFRS1 Genevestigator:Q6PDM2
GermOnline:ENSMUSG00000018379 Uniprot:Q6PDM2
Length = 248
Score = 113 (44.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 26/55 (47%), Positives = 29/55 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 59
FAFVEF DPRDA+DA Y +G D DG R+ VEF G G P G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 215
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>RGD|1587490 [details] [associations]
symbol:Srsf1 "serine/arginine-rich splicing factor 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000395 "mRNA 5'-splice site recognition"
evidence=IEA;ISO] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0016607
"nuclear speck" evidence=IEA;ISO] [GO:0050733 "RS domain binding"
evidence=IEA;ISO] [GO:0060048 "cardiac muscle contraction"
evidence=IEA;ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1587490
GO:GO:0000166 GO:GO:0016607 GO:GO:0001701 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0060048 EMBL:CH473948 GO:GO:0071013
GO:GO:0000395 KO:K12890 OrthoDB:EOG4WH8N5 CTD:6426 IPI:IPI00780927
RefSeq:NP_001103022.1 UniGene:Rn.84878 SMR:D4A9L2
Ensembl:ENSRNOT00000055706 GeneID:689890 KEGG:rno:689890
NextBio:739704 Uniprot:D4A9L2
Length = 248
Score = 113 (44.8 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 26/55 (47%), Positives = 29/55 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 59
FAFVEF DPRDA+DA Y +G D DG R+ VEF G G P G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 40 (19.1 bits), Expect = 1.9e-06, Sum P(2) = 1.9e-06
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 215
RS + RS S RR YS PR +SRS
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRS 246
>UNIPROTKB|E2RJL3 [details] [associations]
symbol:SRSF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 OMA:QVMEDLD EMBL:AAEX03006566
ProteinModelPortal:E2RJL3 PRIDE:E2RJL3 Ensembl:ENSCAFT00000027630
NextBio:20895281 Uniprot:E2RJL3
Length = 253
Score = 113 (44.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 26/55 (47%), Positives = 29/55 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 59
FAFVEF DPRDA+DA Y +G D DG R+ VEF G G P G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 43 (20.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRSPVDD 219
RS + RS S RR YS PR +SRS + +
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRSHISE 250
>UNIPROTKB|J3KTL2 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich-splicing factor 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471109 UniGene:Hs.68714 HGNC:HGNC:10780 ChiTaRS:SRSF1
EMBL:AC015813 ProteinModelPortal:J3KTL2 Ensembl:ENST00000584773
Uniprot:J3KTL2
Length = 253
Score = 113 (44.8 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 26/55 (47%), Positives = 29/55 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 59
FAFVEF DPRDA+DA Y +G D DG R+ VEF G G P G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
Score = 44 (20.5 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R R ++N S SPR SP
Sbjct: 204 RSRSRSRSRS-RSRSRSNSRSRSYSPRRSRGSP 235
Score = 43 (20.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRSPVDD 219
RS + RS S RR YS PR +SRS + +
Sbjct: 216 RSRSNSRSRSYSPRRSRGSPRYS--PRHSRSRSHISE 250
>TAIR|locus:2199837 [details] [associations]
symbol:RSZ21 "RS-containing zinc finger protein 21"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016607 "nuclear speck" evidence=IDA] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0006396 "RNA processing"
evidence=RCA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=RCA] [GO:0035196 "production of miRNAs
involved in gene silencing by miRNA" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0048573 "photoperiodism, flowering" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 EMBL:CP002684 GO:GO:0000166
GO:GO:0046872 GO:GO:0016607 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 Gene3D:4.10.60.10 HSSP:P19339 EMBL:AC002423
GO:GO:0000398 OMA:ARECRRG HOGENOM:HOG000276234 KO:K12896
ProtClustDB:CLSN2683045 EMBL:AF033587 EMBL:AJ002377 EMBL:AK317576
IPI:IPI00539601 PIR:A86373 PIR:T51584 PIR:T52628 RefSeq:NP_564208.1
RefSeq:NP_973901.1 UniGene:At.22803 ProteinModelPortal:O81127
SMR:O81127 IntAct:O81127 STRING:O81127 PRIDE:O81127
EnsemblPlants:AT1G23860.1 EnsemblPlants:AT1G23860.2 GeneID:838997
KEGG:ath:AT1G23860 TAIR:At1g23860 InParanoid:O81127
PhylomeDB:O81127 Genevestigator:O81127 Uniprot:O81127
Length = 187
Score = 93 (37.8 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 26/75 (34%), Positives = 39/75 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
+AF+EF D RDA DA +L+ ++ G R+ + R RG S +C+
Sbjct: 40 YAFLEFDDERDALDAISALDRKN--GWRVELSHKDKGGRGGGGGR----RGGIEDS-KCY 92
Query: 65 NCGIDGHWARDCKAG 79
CG GH+AR+C+ G
Sbjct: 93 ECGELGHFARECRRG 107
Score = 67 (28.6 bits), Expect = 8.7e-07, Sum P(2) = 8.7e-07
Identities = 22/49 (44%), Positives = 28/49 (57%)
Query: 189 QRSPSPRDRRQAN-G-SEYSGSPRGKSRSPVDDADGP--EDRNY-RSPP 232
+RSPSPR RR + G + S SPRG+ P + P R+Y RSPP
Sbjct: 113 RRSPSPRRRRSPDYGYARRSISPRGRRSPPRRRSVTPPRRGRSYSRSPP 161
Score = 59 (25.8 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 22/52 (42%), Positives = 24/52 (46%)
Query: 185 SPQDQRSPSPRDRRQA---NGSEYSGSP--RGKSRSPVDDADGPEDRNYRSP 231
SP+ +RSP PR R G YS SP RG R D P R RSP
Sbjct: 134 SPRGRRSP-PRRRSVTPPRRGRSYSRSPPYRGSRRDSPRRRDSPYGR--RSP 182
>ZFIN|ZDB-GENE-040426-1950 [details] [associations]
symbol:srsf1a "serine/arginine-rich splicing
factor 1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1950 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103 KO:K12890
EMBL:BX511308 EMBL:BC055511 EMBL:BC153596 EMBL:BC153597
IPI:IPI00487017 RefSeq:NP_998180.1 UniGene:Dr.75732
ProteinModelPortal:Q7SXP4 SMR:Q7SXP4 STRING:Q7SXP4
Ensembl:ENSDART00000080413 GeneID:406288 KEGG:dre:406288 CTD:406288
InParanoid:Q7SXP4 OrthoDB:EOG4WH8N5 NextBio:20817919
ArrayExpress:Q7SXP4 Bgee:Q7SXP4 Uniprot:Q7SXP4
Length = 257
Score = 113 (44.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 22/33 (66%), Positives = 26/33 (78%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF DPRDA+DA Y+ +G D DG R+ VEF
Sbjct: 55 FAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEF 87
Score = 44 (20.5 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R R ++N S SPR SP
Sbjct: 213 RSRSRSRSRS-RSRSRSNNRSRSYSPRRSRGSP 244
Score = 42 (19.8 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPR-GKSRS 215
RS + RS S RR +YS PR +SRS
Sbjct: 225 RSRSNNRSRSYSPRRSRGSPQYS--PRHSRSRS 255
>UNIPROTKB|F1NJ04 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02043941 IPI:IPI00574862
Ensembl:ENSGALT00000002148 Uniprot:F1NJ04
Length = 222
Score = 114 (45.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+ FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 38 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 71
Score = 38 (18.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S + S + S R KSRS
Sbjct: 188 RSRSHSRSRSRSRHSHKSRSRSASSSRSKSRS 219
>UNIPROTKB|G4MRA3 [details] [associations]
symbol:MGG_13778 "Zinc finger protein GIS2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:CM001231 KO:K09250 RefSeq:XP_003710840.1
ProteinModelPortal:G4MRA3 EnsemblFungi:MGG_13778T0 GeneID:5048998
KEGG:mgr:MGG_13778 Uniprot:G4MRA3
Length = 230
Score = 122 (48.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 25/51 (49%), Positives = 30/51 (58%)
Query: 51 YLGRGPPPGSGR---CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
Y GRG G R C+ CG H+ARDC+A K CY CG+ GHI R+C
Sbjct: 116 YGGRGGFAGGARPATCYKCGGPNHFARDCQAQAMK--CYACGKLGHISRDC 164
>TAIR|locus:2024770 [details] [associations]
symbol:SR34 "Serine/Arginine-Rich Protein Splicing Factor
34" species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0035061 "interchromatin granule"
evidence=IDA] [GO:0016607 "nuclear speck" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] [GO:0000956 "nuclear-transcribed mRNA
catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC009525
eggNOG:COG0724 KO:K12890 EMBL:M98340 EMBL:AF001035 EMBL:AY085920
IPI:IPI00521934 IPI:IPI00538714 PIR:F86158 PIR:S71185
RefSeq:NP_563665.3 RefSeq:NP_850933.1 UniGene:At.24497
ProteinModelPortal:O22315 SMR:O22315 IntAct:O22315 STRING:O22315
PaxDb:O22315 PRIDE:O22315 EnsemblPlants:AT1G02840.1
EnsemblPlants:AT1G02840.3 GeneID:839262 KEGG:ath:AT1G02840
GeneFarm:4677 TAIR:At1g02840 InParanoid:O22315 OMA:PGPRSKS
PhylomeDB:O22315 ProtClustDB:CLSN2690659 Genevestigator:O22315
GO:GO:0035061 Uniprot:O22315
Length = 303
Score = 105 (42.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 25/59 (42%), Positives = 32/59 (54%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSR-EYLGRGPPPGSGR 62
+AFVEF D RDA+DA + +G D DG R+ VE A +R + G G G GR
Sbjct: 47 YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGR 105
Score = 58 (25.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 184 RSPQDQRSPSPRDRRQ--ANGSEYSGSPRGKSRSP 216
RS RSP + R+ A + S PR KSRSP
Sbjct: 228 RSRSRSRSPKAKSSRRSPAKSTSRSPGPRSKSRSP 262
Score = 53 (23.7 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 184 RSP---QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 231
RSP RSPSPR R + S + S+SP + + RSP
Sbjct: 251 RSPGPRSKSRSPSPRRSRSRSRSPLPSVQKEGSKSPSKPSPAKSPIHTRSP 301
Score = 53 (23.7 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 182 DERSPQDQRSPSPRDRRQANGSEYSGS---PRGKSRSPVDDAD--GPEDRNYRSP 231
D RSP RS S + R ++ G S S R +SRSP + P RSP
Sbjct: 200 DSRSPSRGRSYS-KSRSRSRGRSVSRSRSRSRSRSRSPKAKSSRRSPAKSTSRSP 253
>ASPGD|ASPL0000040986 [details] [associations]
symbol:AN9093 species:162425 "Emericella nidulans"
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0045182 "translation regulator
activity" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0000932 "cytoplasmic mRNA processing body" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 EMBL:BN001306 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 HOGENOM:HOG000186262 EnsemblFungi:CADANIAT00009521
OMA:QAGHISR Uniprot:C8VH53
Length = 233
Score = 121 (47.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 22/46 (47%), Positives = 28/46 (60%)
Query: 53 GRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
G G P + C+ CG H+ARDC+A K CY CG+ GHI R+C
Sbjct: 115 GYGGYPRAATCYKCGGPNHFARDCQAQAMK--CYACGKLGHISRDC 158
>FB|FBgn0004587 [details] [associations]
symbol:B52 "B52" species:7227 "Drosophila melanogaster"
[GO:0035327 "transcriptionally active chromatin" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;IDA;NAS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0035062 "omega speckle" evidence=IDA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IMP] [GO:0007067 "mitosis" evidence=IMP]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0005700 "polytene
chromosome" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0007067 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0005700 GO:GO:0071011 GO:GO:0071013
GO:GO:0035327 eggNOG:COG0724 GO:GO:0006376 GO:GO:0000381 KO:K12893
EMBL:X58720 EMBL:X62599 EMBL:AY069302 EMBL:AY113327 EMBL:BT001417
EMBL:BT001482 EMBL:BT001495 EMBL:BT001750 EMBL:BT003286
EMBL:BT004500 EMBL:BT125783 EMBL:S51722 PIR:A37282 PIR:A40459
PIR:H48110 RefSeq:NP_001014619.2 RefSeq:NP_001163603.1
RefSeq:NP_001163604.1 RefSeq:NP_001163605.1 RefSeq:NP_788665.1
RefSeq:NP_788666.1 RefSeq:NP_788667.2 RefSeq:NP_788668.1
RefSeq:NP_788669.1 RefSeq:NP_788670.1 RefSeq:NP_788671.2
UniGene:Dm.2188 ProteinModelPortal:P26686 SMR:P26686 IntAct:P26686
MINT:MINT-934286 STRING:P26686 PaxDb:P26686 PRIDE:P26686
GeneID:41670 KEGG:dme:Dmel_CG10851 CTD:41670 FlyBase:FBgn0004587
InParanoid:P26686 OMA:VIEFRSH OrthoDB:EOG4NK9C3 ChiTaRS:SRSF6
GenomeRNAi:41670 NextBio:824942 Bgee:P26686 GermOnline:CG10851
Uniprot:P26686
Length = 376
Score = 112 (44.5 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 28/65 (43%), Positives = 35/65 (53%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSR---EYLGRGPP 57
+K + FVEF D RDADDA Y LNG+++ G R++VE A R Y GR
Sbjct: 35 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARGSNRDRYDDRYGGRRGG 94
Query: 58 PGSGR 62
G GR
Sbjct: 95 -GGGR 98
Score = 48 (22.0 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
R + +RS R + ++ G R KS+SPV R+ +S
Sbjct: 221 RRSRSRRSSHSRSKSRSRSKSRGG--RSKSKSPVKSRSRSRSRSNKS 265
Score = 46 (21.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 15/49 (30%), Positives = 19/49 (38%)
Query: 182 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
D+ +R DRR GS RG+SRS + R RS
Sbjct: 177 DDTELNGRRIHLVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRS 225
Score = 41 (19.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 221
RS RS RD ++ +S R +SRSP + D
Sbjct: 255 RSRSRSRSNKSRDVSKSKSKSHS---RTRSRSPKRERD 289
Score = 40 (19.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPED 225
RS S ++ ++ S SP+ + SP + + +D
Sbjct: 341 RSASAENKSRSRSRSRSASPKNGNASPDRNNESMDD 376
Score = 39 (18.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 17/52 (32%), Positives = 21/52 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
RS +RS R RR ++ S S R KSR + P RS N
Sbjct: 216 RSRSRRRS---RSRRSSHSRSKSRS-RSKSRGGRSKSKSPVKSRSRSRSRSN 263
>TAIR|locus:2036520 [details] [associations]
symbol:AtRZ-1b "AtRZ-1b" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA;IDA] [GO:0003723
"RNA binding" evidence=ISS] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI;IEP] [GO:0009414 "response to water
deprivation" evidence=IEP] [GO:0009651 "response to salt stress"
evidence=IEP] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0009409 GO:GO:0009414 GO:GO:0008270 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC002292 Gene3D:4.10.60.10 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 KO:K12885 EMBL:AY088195
EMBL:BT002328 EMBL:AK221863 IPI:IPI00521762 PIR:G96631
RefSeq:NP_564759.1 RefSeq:NP_849832.1 UniGene:At.19208
UniGene:At.26558 ProteinModelPortal:O22703 SMR:O22703 IntAct:O22703
PaxDb:O22703 PRIDE:O22703 EnsemblPlants:AT1G60650.1
EnsemblPlants:AT1G60650.2 GeneID:842359 KEGG:ath:AT1G60650
TAIR:At1g60650 InParanoid:O22703 OMA:HHLENEY PhylomeDB:O22703
ProtClustDB:CLSN2718554 Genevestigator:O22703 Uniprot:O22703
Length = 292
Score = 117 (46.2 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 31/83 (37%), Positives = 39/83 (46%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRG-PPPGSG 61
R F F+ F+D R ADDA ++GR++ I V A + G G G G
Sbjct: 53 RGFGFITFTDRRGADDAIKHMHGRELGNKVISVNKAEPKVGGEDVDQLKKGGGYSSRGKG 112
Query: 62 ---RCFNCGIDGHWARDCKA-GD 80
CF C GHWARDC + GD
Sbjct: 113 TEDECFKCRRPGHWARDCPSTGD 135
Score = 35 (17.4 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 214 RSPVDDADGPEDR 226
RS + D DG DR
Sbjct: 147 RSRIGDIDGHRDR 159
>DICTYBASE|DDB_G0280393 [details] [associations]
symbol:DDB_G0280393 "CCHC-type zinc finger-containing
protein" species:44689 "Dictyostelium discoideum" [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 dictyBase:DDB_G0280393 GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AAFI02000035 Gene3D:4.10.60.10 SUPFAM:SSF57756
ProtClustDB:CLSZ2846809 RefSeq:XP_641373.1
ProteinModelPortal:Q54VI2 PRIDE:Q54VI2 EnsemblProtists:DDB0233308
GeneID:8622507 KEGG:ddi:DDB_G0280393 eggNOG:NOG242322
InParanoid:Q54VI2 OMA:PRERHTE Uniprot:Q54VI2
Length = 412
Score = 104 (41.7 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 30/91 (32%), Positives = 44/91 (48%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 60
+K +AFVEF + + A DA ++ VDG +I+VE + + G+ P
Sbjct: 206 VKNGYAFVEFDNEKSARDAIEEMHDSIVDGEKILVE------------KSHSGKKHPD-- 251
Query: 61 GRCFNCGIDGHWARDCKAG----DWKNKCYR 87
CF C GHWAR C G D +++ YR
Sbjct: 252 -ECFICRGRGHWARSCPKGGRGRDGRDRDYR 281
Score = 59 (25.8 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDR 226
+RS RS SPR R G+ Y R +SR D G DR
Sbjct: 339 DRSYSRSRSRSPRYRSNG-GNRYRDRSRDRSRDRSGDRRGGSDR 381
Score = 37 (18.1 bits), Expect = 0.00068, Sum P(2) = 0.00068
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 182 DERSPQDQRSPSPRDRRQANGS----EYSGSPR 210
D RS +D+ + R+R ++N E + SPR
Sbjct: 380 DRRSGRDRSTERRRERSKSNERRREREGNNSPR 412
>ZFIN|ZDB-GENE-071005-2 [details] [associations]
symbol:srsf3b "serine/arginine-rich splicing factor
3b" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-071005-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:NOG302928
GeneTree:ENSGT00700000104452 OMA:SPPPRRX OrthoDB:EOG4VDQ12
HOVERGEN:HBG104956 EMBL:CU062631 IPI:IPI00785666 UniGene:Dr.75959
SMR:A5WWG4 Ensembl:ENSDART00000106636 Ensembl:ENSDART00000135829
Ensembl:ENSDART00000144309 Ensembl:ENSDART00000145685
Uniprot:A5WWG4
Length = 164
Score = 105 (42.0 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 26/58 (44%), Positives = 31/58 (53%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + + RGPPP R
Sbjct: 47 FAFVEFEDPRDATDAVRELDGRTLCGCRVRVELSNG-------EKRTRSRGPPPSWNR 97
Score = 36 (17.7 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
PQ +RSP R ++ +S R + RS
Sbjct: 110 PQRRRSPRRRSFSRSRSRSFSRERR-RERS 138
>UNIPROTKB|F1PEZ0 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AAEX03001696
Ensembl:ENSCAFT00000018513 OMA:WESKTHI Uniprot:F1PEZ0
Length = 479
Score = 114 (45.2 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+ FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 16 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 49
Score = 45 (20.9 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 17/53 (32%), Positives = 27/53 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEY-SGSPRGKSRSPVDDADGPEDRNY-RSPPEE 234
RS RS S R R++ + SGS + K + +DA+ + R+ RS +E
Sbjct: 350 RSRSRSRSKSERSRKRGGKRDSKSGSSKKKKK---EDAERSQSRSRSRSASKE 399
Score = 42 (19.8 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S R+ + S S S KSRS
Sbjct: 168 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 199
Score = 42 (19.8 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 16/36 (44%), Positives = 18/36 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RS S R R Q+ S S + KSRSP D
Sbjct: 202 RSGSHSRSKS-RSRSQSR----SRSKKEKSRSPSKD 232
Score = 42 (19.8 bits), Expect = 9.4e-06, Sum P(2) = 9.4e-06
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 184 RSPQDQ-RSPSPRDR-RQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS +++ RSPS D+ R + S + R KS+ ++ D +S
Sbjct: 220 RSKKEKSRSPSKDDKSRSRSRSRSADKRRSKSKDQAEEKIQNSDNTGKS 268
Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRS 215
RS R R +GS S + +SRS
Sbjct: 176 RSRHSRKSRSRSGSSKSSHSKSRSRS 201
Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 10/32 (31%), Positives = 14/32 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS + RS + + S G R +SRS
Sbjct: 302 RSKEKSRSQEKGPHKSRSRSRSKGGSRSRSRS 333
Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS +RS S +D+ + + + KSRSP
Sbjct: 242 RSADKRRSKS-KDQAEEKIQNSDNTGKSKSRSP 273
Score = 39 (18.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 9/32 (28%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S +++ ++ + R +SRS
Sbjct: 212 RSRSQSRSRSKKEKSRSPSKDDKSRSRSRSRS 243
Score = 35 (17.4 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 74 RDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
RD K+G K K ER +++ K+
Sbjct: 369 RDSKSGSSKKKKKEDAERSQSRSRSRSASKE 399
Score = 34 (17.0 bits), Expect = 8.5e-06, Sum P(3) = 8.5e-06
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS + P + R + S R KSRS
Sbjct: 430 RSNSKSKPNPPSESRSRSKSASKTRSRSKSRS 461
>UNIPROTKB|F1LSN0 [details] [associations]
symbol:Srsf4 "Protein Sfrs4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
IPI:IPI00951281 Ensembl:ENSRNOT00000064233 ArrayExpress:F1LSN0
Uniprot:F1LSN0
Length = 492
Score = 114 (45.2 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+ FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 41 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 74
Score = 45 (20.9 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYRSPPEEN 235
R + + S ++ SGS R KSRS + RSP ++N
Sbjct: 206 RKSRSRSGSSKSSHSKSRSRSRSGSHSRSKSRSRSQSRSRSKKEKSRSPSKDN 258
Score = 44 (20.5 bits), Expect = 6.4e-06, Sum P(2) = 6.4e-06
Identities = 20/48 (41%), Positives = 24/48 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSP 231
RS RS S R R Q+ S S + KSRSP D + R+ RSP
Sbjct: 227 RSGSHSRSKS-RSRSQSR----SRSKKEKSRSPSKD-NKSRSRS-RSP 267
Score = 43 (20.2 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 184 RSPQDQ-RSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS +++ RSPS +D + + S R KS+ +D
Sbjct: 245 RSKKEKSRSPS-KDNKSRSRSRSPDKSRSKSKDHAED 280
Score = 42 (19.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S R+ + S S S KSRS
Sbjct: 193 RSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRS 224
Score = 40 (19.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRS 215
RS R R +GS S + +SRS
Sbjct: 201 RSRHSRKSRSRSGSSKSSHSKSRSRS 226
Score = 37 (18.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 9/34 (26%), Positives = 15/34 (44%)
Query: 187 QDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDA 220
+D+R R R ++ S S R + S D+
Sbjct: 352 KDKRKGRKRSREESRSRSRSKSERSRKHSSKRDS 385
Score = 34 (17.0 bits), Expect = 6.7e-05, Sum P(2) = 6.7e-05
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN 227
RS + P + R + S + R +S+SP A R+
Sbjct: 443 RSTSKSKPSLPAESRSRSKS--ASKTRSRSKSPSRSASRSPSRS 484
>ZFIN|ZDB-GENE-030616-631 [details] [associations]
symbol:srsf3a "serine/arginine-rich splicing factor
3a" species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030616-631 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HSSP:Q61474 EMBL:AL732567
GeneTree:ENSGT00700000104452 HOVERGEN:HBG104956 OMA:RSRSMYR
EMBL:BC071322 IPI:IPI00510131 RefSeq:NP_001002053.1
UniGene:Dr.40822 SMR:Q801U3 STRING:Q801U3
Ensembl:ENSDART00000028217 GeneID:368925 KEGG:dre:368925 CTD:368925
InParanoid:Q801U3 OrthoDB:EOG4RJG36 NextBio:20813270 Uniprot:Q801U3
Length = 174
Score = 103 (41.3 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 28/58 (48%), Positives = 32/58 (55%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFVEF DPRDA DA L+GR + G R+ VE + SR RGPPP R
Sbjct: 52 FAFVEFEDPRDATDAVRELDGRTLCGCRVRVEMSNGEKR----SRF---RGPPPSWSR 102
Score = 42 (19.8 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 182 DERSPQD-QRSPSPRDRRQANGSEYSGS-PRGKSRSPVDDADGPEDRNYR 229
D R D +R SP R ++ +S S R SR + DRNY+
Sbjct: 107 DYRRGDDYRRRSSPPARHRSPRRSFSRSRSRSLSRERRRERSLSRDRNYK 156
>UNIPROTKB|F1NJ03 [details] [associations]
symbol:SRSF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048025 GeneTree:ENSGT00700000104103 OMA:KDRGETR
EMBL:AADN02043941 IPI:IPI00581723 Ensembl:ENSGALT00000002149
Uniprot:F1NJ03
Length = 439
Score = 114 (45.2 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+ FVEF D RDADDA Y LNG+D+ G R+IVE A
Sbjct: 1 YGFVEFDDLRDADDAVYELNGKDLCGERVIVEHA 34
Score = 43 (20.2 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 16/52 (30%), Positives = 24/52 (46%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
RS RS S R + S R KSRS G ++++ R+P +E+
Sbjct: 171 RSASSSRSKSRSRSRSVSRSRSKSRSRSKSRSR-----GQKEKS-RTPSKED 216
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 182 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDAD 221
DE+ + RS S R +GS+ G R RS D +
Sbjct: 244 DEK--EKSRSRSKEKSRSRSGSKDRGETRESLRSRSKDRE 281
Score = 38 (18.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 12/32 (37%), Positives = 14/32 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS S + S + S R KSRS
Sbjct: 151 RSRSHSRSRSRSRHSHKSRSRSASSSRSKSRS 182
Score = 36 (17.7 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 11/32 (34%), Positives = 14/32 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
+S RS S R A+ S R +SRS
Sbjct: 408 KSVSKPRSRSKSRSRSASRSHSQSRSRSRSRS 439
Score = 34 (17.0 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
+S + RS S ++ N R +SRS
Sbjct: 292 KSRNESRSRSHSKEKRKNRKRSRDDSRSRSRS 323
>UNIPROTKB|G3MZ41 [details] [associations]
symbol:ZCCHC13 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GeneTree:ENSGT00510000047065 OMA:SSKECFK EMBL:DAAA02072583
Ensembl:ENSBTAT00000001124 Uniprot:G3MZ41
Length = 175
Score = 114 (45.2 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 59 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
G C+ CG GH ARDC + + KCY CG+ GHI++ C
Sbjct: 92 GERCCYTCGRPGHLARDCDRQE-ERKCYSCGKSGHIQKYC 130
Score = 109 (43.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+ CG GH+A+DC D + CY CG+ GHI ++C PK+
Sbjct: 52 CYRCGKFGHYAKDCDLLD--DICYNCGKSGHIAKDCAE-PKR 90
Score = 105 (42.0 bits), Expect = 0.00016, P = 0.00016
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+ CG GH A +C+ + N CYRCGE GH+ R C
Sbjct: 134 KCYRCGEIGHVAINCRKMNEVN-CYRCGESGHLTREC 169
Score = 105 (42.0 bits), Expect = 0.00016, P = 0.00016
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 63 CFNCGIDGHWARDCKAGDWKNK--CYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DC + + CY CG GH+ R+C ++
Sbjct: 72 CYNCGKSGHIAKDCAEPKREGERCCYTCGRPGHLARDCDRQEER 115
>CGD|CAL0002417 [details] [associations]
symbol:GIS2 species:5476 "Candida albicans" [GO:0070417
"cellular response to cold" evidence=IMP] [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0071470 "cellular response to osmotic
stress" evidence=IMP] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0042788 "polysomal ribosome" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000747 "conjugation with cellular fusion"
evidence=IEA] [GO:0031137 "regulation of conjugation with cellular
fusion" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 CGD:CAL0002417
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 GO:GO:0035690
EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470 GO:GO:0070417
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 114 (45.2 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 57 PPG--SGR-CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
P G SG C+ CG H+ARDC+A K CY CG+ GHI ++C +S
Sbjct: 104 PSGRASGTTCYKCGGPNHFARDCQANTVK--CYACGKVGHISKDCHSS 149
Score = 109 (43.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 102
+C++CG GH +C KCY CG+ GHI +NC ++P
Sbjct: 52 QCYSCGDVGHIQTECPNQAQGAKCYNCGQFGHISKNCDSAP 92
>UNIPROTKB|Q59YJ9 [details] [associations]
symbol:GIS2 "Putative uncharacterized protein GIS2"
species:237561 "Candida albicans SC5314" [GO:0003676 "nucleic acid
binding" evidence=NAS] [GO:0035690 "cellular response to drug"
evidence=IMP] [GO:0070417 "cellular response to cold" evidence=IMP]
[GO:0071470 "cellular response to osmotic stress" evidence=IMP]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
CGD:CAL0002417 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
GO:GO:0035690 EMBL:AACQ01000100 EMBL:AACQ01000097 GO:GO:0071470
GO:GO:0070417 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 RefSeq:XP_714599.1
RefSeq:XP_714730.1 ProteinModelPortal:Q59YJ9 STRING:Q59YJ9
GeneID:3643638 GeneID:3643744 KEGG:cal:CaO19.10692
KEGG:cal:CaO19.3182 Uniprot:Q59YJ9
Length = 175
Score = 114 (45.2 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 23/48 (47%), Positives = 30/48 (62%)
Query: 57 PPG--SGR-CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
P G SG C+ CG H+ARDC+A K CY CG+ GHI ++C +S
Sbjct: 104 PSGRASGTTCYKCGGPNHFARDCQANTVK--CYACGKVGHISKDCHSS 149
Score = 109 (43.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 102
+C++CG GH +C KCY CG+ GHI +NC ++P
Sbjct: 52 QCYSCGDVGHIQTECPNQAQGAKCYNCGQFGHISKNCDSAP 92
>RGD|1359241 [details] [associations]
symbol:Srsf6 "serine/arginine-rich splicing factor 6"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359241 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000276234 OrthoDB:EOG41C6X9 UniGene:Rn.3175
NextBio:679254 EMBL:BC087121 IPI:IPI00357978
ProteinModelPortal:Q5PQM1 STRING:Q5PQM1 PhosphoSite:Q5PQM1
UCSC:RGD:1359241 InParanoid:Q5PQM1 Genevestigator:Q5PQM1
Uniprot:Q5PQM1
Length = 339
Score = 112 (44.5 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LN +++ G R+IVE A
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHA 70
Score = 42 (19.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
P+ R R ++ R +SRSP ++ G RS
Sbjct: 251 PKSDRGSHSHSRSRSKDKYGKSRSRSRSRSPKENGKGDIKSKSRS 295
Score = 41 (19.5 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 37 (18.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS SP + S P+ SRS
Sbjct: 294 RSRSQSRSHSPLPAPPSKARSMSPPPKRASRS 325
Score = 35 (17.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 192 PSPRDRRQANGSEYSGSPRGKSRS 215
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 215
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>UNIPROTKB|G3V6S8 [details] [associations]
symbol:Sfrs6 "Similar to dJ862K6.2.2 (Splicing factor,
arginine/serine-rich 6 (SRP55-2)(Isoform 2)), isoform CRA_a"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474005 GeneTree:ENSGT00700000104103 KO:K12893 OMA:CKERSHG
CTD:6431 RefSeq:NP_001014207.2 UniGene:Rn.3175
ProteinModelPortal:G3V6S8 SMR:G3V6S8 Ensembl:ENSRNOT00000008427
GeneID:362264 KEGG:rno:362264 NextBio:679254 Uniprot:G3V6S8
Length = 339
Score = 112 (44.5 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 21/38 (55%), Positives = 27/38 (71%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K + FVEF D RDADDA Y LN +++ G R+IVE A
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNSKELCGERVIVEHA 70
Score = 42 (19.8 bits), Expect = 7.1e-06, Sum P(2) = 7.1e-06
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
P+ R R ++ R +SRSP ++ G RS
Sbjct: 251 PKSDRGSHSHSRSRSKDKYGKSRSRSRSRSPKENGKGDIKSKSRS 295
Score = 41 (19.5 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 15/47 (31%), Positives = 19/47 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRS 230
RS + RS S R R + S R +SRS + R RS
Sbjct: 199 RSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKGRKSRS 245
Score = 37 (18.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RS RS SP + S P+ SRS
Sbjct: 294 RSRSQSRSHSPLPAPPSKARSMSPPPKRASRS 325
Score = 35 (17.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 192 PSPRDRRQANGSEYSGSPRGKSRS 215
P RR +GS R +SRS
Sbjct: 183 PRTSHRRSYSGSRSRSRSRRRSRS 206
Score = 35 (17.4 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSP-RGKSRS 215
RS +RS S R RR + S S R +SRS
Sbjct: 197 RSRSRRRSRS-RSRRSSRSRSRSISKSRSRSRS 228
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 96 (38.9 bits), Expect = 7.9e-06, Sum P(3) = 7.9e-06
Identities = 26/61 (42%), Positives = 28/61 (45%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSR----EYLGRGPPP 58
R FAFV F P DA DA LNG+ +DG I VE A R RGPP
Sbjct: 49 RGFAFVTFESPADAKDAARELNGKALDGKPIKVEQATKPSFSTPSRRGPPTSPRSRGPPR 108
Query: 59 G 59
G
Sbjct: 109 G 109
Score = 52 (23.4 bits), Expect = 7.9e-06, Sum P(3) = 7.9e-06
Identities = 18/57 (31%), Positives = 26/57 (45%)
Query: 54 RGPPP---GSGRC--FNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ RD + +N Y G R + R + P +
Sbjct: 278 RGPPPSYGGSSRYDDYSSTRDGYGGRDSYSSS-RNDIYSSG-RDRVGRQERGLPPSM 332
Score = 52 (23.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 17/45 (37%), Positives = 20/45 (44%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SP+D S +DR YSG G SR D P D +YR
Sbjct: 183 SPRDD-GYSGKDRYDG----YSGRDYGSSRDSRDYGPPPRDYSYR 222
Score = 51 (23.0 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 186 PQDQRSPSPRDRRQANGSE-YSGSPRGKSRSPVDDADGPEDRNYRSPPEE 234
P+ PS RD + + YSG R S D + R+Y PP +
Sbjct: 169 PRRDPMPSRRDVYMSPRDDGYSGKDRYDGYSGRDYGSSRDSRDYGPPPRD 218
Score = 42 (19.8 bits), Expect = 7.9e-06, Sum P(3) = 7.9e-06
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 339 PRDSYSSSSRGGPRGGGRGGSRSDRGGGRS 368
>UNIPROTKB|Q8WW36 [details] [associations]
symbol:ZCCHC13 "Zinc finger CCHC domain-containing protein
13" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
HOVERGEN:HBG000397 EMBL:BC021176 IPI:IPI00397484 RefSeq:NP_976048.1
UniGene:Hs.157231 ProteinModelPortal:Q8WW36 SMR:Q8WW36
IntAct:Q8WW36 MINT:MINT-2879587 PhosphoSite:Q8WW36 DMDM:71152962
PRIDE:Q8WW36 DNASU:389874 Ensembl:ENST00000339534 GeneID:389874
KEGG:hsa:389874 UCSC:uc004ebs.4 CTD:389874 GeneCards:GC0XP073524
HGNC:HGNC:31749 HPA:HPA003382 neXtProt:NX_Q8WW36
PharmGKB:PA134926925 InParanoid:Q8WW36 OMA:SSKECFK PhylomeDB:Q8WW36
GenomeRNAi:389874 NextBio:103180 Bgee:Q8WW36 CleanEx:HS_ZCCHC13
Genevestigator:Q8WW36 GermOnline:ENSG00000187969 Uniprot:Q8WW36
Length = 166
Score = 112 (44.5 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 63 CFNCGIDGHWARDCK--AGDWKNKCYRCGERGHIERNCQNSPKK 104
C+NCG GH A+DCK + + CY CG GH+ R+C ++
Sbjct: 67 CYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCDRQKEQ 110
Score = 109 (43.4 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
C+ CG GH ARDC + KCY CG+ GHI+++C
Sbjct: 91 CYTCGRLGHLARDCDRQK-EQKCYSCGKLGHIQKDC 125
Score = 105 (42.0 bits), Expect = 0.00011, P = 0.00011
Identities = 20/45 (44%), Positives = 28/45 (62%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS-PKKL 105
+C++CG GH +DC + KCYRCGE GH+ NC + P +L
Sbjct: 111 KCYSCGKLGHIQKDCA----QVKCYRCGEIGHVAINCSKARPGQL 151
>UNIPROTKB|K7GNR2 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 EMBL:FP102148
Ensembl:ENSSSCT00000034855 Uniprot:K7GNR2
Length = 129
Score = 90 (36.7 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
R FAFV F P DA DA +NG+ +DG I VE A
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Score = 43 (20.2 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 12/33 (36%), Positives = 13/33 (39%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPED 225
SPRD + YS SR D A P D
Sbjct: 95 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRD 127
>TAIR|locus:2079276 [details] [associations]
symbol:ATRZ-1A species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0009409 "response to cold" evidence=IMP] [GO:0009631 "cold
acclimation" evidence=IGI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR001878
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102
PROSITE:PS50158 SMART:SM00343 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
GO:GO:0046872 GO:GO:0008270 Gene3D:3.30.70.330 GO:GO:0009631
GO:GO:0003676 Gene3D:4.10.60.10 EMBL:AP001298 HOGENOM:HOG000276232
UniGene:At.48707 HSSP:Q61474 KO:K12885 EMBL:AY054613 EMBL:AF424613
EMBL:AY072457 EMBL:AK221725 EMBL:AK227088 IPI:IPI00530350
RefSeq:NP_189273.1 ProteinModelPortal:Q9LIN3 SMR:Q9LIN3
IntAct:Q9LIN3 STRING:Q9LIN3 PRIDE:Q9LIN3 EnsemblPlants:AT3G26420.1
GeneID:822246 KEGG:ath:AT3G26420 TAIR:At3g26420 InParanoid:Q9LIN3
OMA:SSKDDRY PhylomeDB:Q9LIN3 ProtClustDB:CLSN2723027
Genevestigator:Q9LIN3 Uniprot:Q9LIN3
Length = 245
Score = 105 (42.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 29/86 (33%), Positives = 39/86 (45%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXS--------REY-LG 53
R F F+ F + + D+A ++NG D+DG I V+ A R Y
Sbjct: 48 RGFGFITFDEKKAMDEAIAAMNGMDLDGRTITVDKAQPHQGGAGRDNDGDRGRDRGYDRD 107
Query: 54 RGPPPGS---GRCFNCGIDGHWARDC 76
R P G G CF CG GH+AR+C
Sbjct: 108 RSRPSGGRGGGDCFKCGKPGHFAREC 133
Score = 42 (19.8 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 16/56 (28%), Positives = 21/56 (37%)
Query: 182 DERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRN-YRSPPEENG 236
D +D R + DR A YS + S DD G D R P+ +G
Sbjct: 157 DRYGAKDDRYGAKEDRYGAKDDRYSS--KDDRYSSKDDRYGSRDGGGSRYGPDRSG 210
>TAIR|locus:2135139 [details] [associations]
symbol:CSDP1 "cold shock domain protein 1" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IGI;IEP] [GO:0003690 "double-stranded DNA
binding" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0009414
"response to water deprivation" evidence=IEP] [GO:0009651 "response
to salt stress" evidence=IEP] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] [GO:0009631 "cold acclimation" evidence=IGI]
[GO:0009165 "nucleotide biosynthetic process" evidence=RCA]
InterPro:IPR001878 InterPro:IPR002059 InterPro:IPR011129
Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050 PROSITE:PS50158
SMART:SM00343 SMART:SM00357 Prosite:PS00352 GO:GO:0005634
GO:GO:0005737 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006355
GO:GO:0046872 GO:GO:0009651 GO:GO:0009414 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 EMBL:AL161588 GO:GO:0003690
GO:GO:0003697 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:AL022373
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 GO:GO:0010501
EMBL:AK226815 IPI:IPI00525206 PIR:T05494 RefSeq:NP_195326.1
UniGene:At.23073 HSSP:P15277 ProteinModelPortal:O65639 SMR:O65639
STRING:O65639 PaxDb:O65639 PRIDE:O65639 EnsemblPlants:AT4G36020.1
GeneID:829758 KEGG:ath:AT4G36020 TAIR:At4g36020 eggNOG:COG1278
InParanoid:O65639 OMA:GRACYNC PhylomeDB:O65639
ProtClustDB:CLSN2685328 Genevestigator:O65639 GO:GO:0032508
Uniprot:O65639
Length = 299
Score = 116 (45.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 20/41 (48%), Positives = 27/41 (65%)
Query: 59 GSGRCFNCGIDGHWARDCKAGDWKNK-CYRCGERGHIERNC 98
GSG C++CG GH ARDC ++ CY+CG GH+ R+C
Sbjct: 228 GSGTCYSCGGVGHIARDCATKRQPSRGCYQCGGSGHLARDC 268
Score = 111 (44.1 bits), Expect = 0.00012, P = 0.00012
Identities = 21/48 (43%), Positives = 25/48 (52%)
Query: 58 PGSGRCFNCGIDGHWARDCK-----AGDWKNKCYRCGERGHIERNCQN 100
P G C+ CG GH ARDC G N CY+CG+ GH R C +
Sbjct: 251 PSRG-CYQCGGSGHLARDCDQRGSGGGGNDNACYKCGKEGHFARECSS 297
Score = 108 (43.1 bits), Expect = 0.00031, P = 0.00031
Identities = 22/50 (44%), Positives = 29/50 (58%)
Query: 59 GSGRCFNCGIDGHWARDCKA---GDWKNK-------CYRCGERGHIERNC 98
G G C+NCG GH+ARDC + GD + CY CG+ GH+ R+C
Sbjct: 131 GEG-CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDC 179
>UNIPROTKB|H7BXF3 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:10781 ChiTaRS:TRA2B EMBL:AC009247
ProteinModelPortal:H7BXF3 PRIDE:H7BXF3 Ensembl:ENST00000259043
Uniprot:H7BXF3
Length = 127
Score = 99 (39.9 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 29/86 (33%), Positives = 44/86 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV F + DA +A+ NG ++DG RI V+F+ Y+GR P GS R
Sbjct: 18 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSR 76
Query: 63 ---CFNCGID-GHWARDCKAGDWKNK 84
++ G D G+ RD + ++ +
Sbjct: 77 RRDYYDRGYDRGYDDRDYYSRSYRRR 102
>POMBASE|SPAC13D6.02c [details] [associations]
symbol:byr3 "zinc finger protein Byr3" species:4896
"Schizosaccharomyces pombe" [GO:0000747 "conjugation with cellular
fusion" evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0031137 "regulation of conjugation with cellular fusion"
evidence=IGI] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 PomBase:SPAC13D6.02c GO:GO:0005829 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0000747 EMBL:S45038 PIR:T37622 RefSeq:NP_593680.1
ProteinModelPortal:P36627 STRING:P36627 PRIDE:P36627
EnsemblFungi:SPAC13D6.02c.1 GeneID:2542829 KEGG:spo:SPAC13D6.02c
HOGENOM:HOG000186262 KO:K09250 OMA:FQFMSSS OrthoDB:EOG4K0TXR
NextBio:20803871 GO:GO:0031137 Uniprot:P36627
Length = 179
Score = 110 (43.8 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 102
C+NC GH A +C + CY CG GH+ R+C +SP
Sbjct: 38 CYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSP 77
Score = 104 (41.7 bits), Expect = 0.00026, P = 0.00026
Identities = 19/41 (46%), Positives = 24/41 (58%)
Query: 58 PGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
PG RC+NCG +GH AR+C G + CY C + GH C
Sbjct: 15 PGP-RCYNCGENGHQARECTKG---SICYNCNQTGHKASEC 51
Score = 101 (40.6 bits), Expect = 0.00066, P = 0.00066
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 57 PPGSGRCFNCGIDGHWARDCKAGDWKNK---CYRCGERGHIERNCQNS 101
P C+ CG GH RDC + + CY+CG GHI R+C+ +
Sbjct: 54 PQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTN 101
Score = 100 (40.3 bits), Expect = 0.00089, P = 0.00089
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101
C+ CG GH ARDC G KCY CG+ GH CQ +
Sbjct: 118 CYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQA 153
>UNIPROTKB|H0Y6E7 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX Ensembl:ENST00000419968
Uniprot:H0Y6E7
Length = 292
Score = 98 (39.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 51 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 100
Score = 53 (23.7 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 210 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 246
Score = 45 (20.9 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 226 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 278
Score = 44 (20.5 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
R P R +G SR P+ GP R+ PP+ +
Sbjct: 122 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 167
>WB|WBGene00043995 [details] [associations]
symbol:F40F12.9 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0016021 "integral to membrane"
evidence=IEA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:Z30215
GeneTree:ENSGT00390000010943 RefSeq:NP_001255048.1
ProteinModelPortal:D5MCP3 SMR:D5MCP3 EnsemblMetazoa:F40F12.9a.1
EnsemblMetazoa:F40F12.9a.2 GeneID:259311 KEGG:cel:CELE_F40F12.9
CTD:259311 WormBase:F40F12.9a Uniprot:D5MCP3
Length = 113
Score = 98 (39.6 bits), Expect = 3.6e-05, P = 3.6e-05
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
C+NC GH +RDC K C++CG RGH R C + +K
Sbjct: 29 CYNCHKLGHMSRDCPEEQPK-ACFKCGFRGHYYRECPSQIEK 69
>UNIPROTKB|F1NZD3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0070062 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0006366 GO:GO:0006509 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0000381 GeneTree:ENSGT00700000104336
InterPro:IPR012604 Pfam:PF08081 OMA:PFFKGMS EMBL:AADN02013316
EMBL:AADN02013317 IPI:IPI00575141 Ensembl:ENSGALT00000010428
Uniprot:F1NZD3
Length = 385
Score = 100 (40.3 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 30/75 (40%), Positives = 33/75 (44%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP---G 59
R FAFV F P DA DA +NG+ +DG I VE A R G PPP G
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFESGGRR---GPPPPPRSRG 105
Query: 60 SGRCFNCGIDGHWAR 74
R G G AR
Sbjct: 106 PPRGLRGGRGGSGAR 120
Score = 54 (24.1 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 200 ANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
A G GS G SR P+ GP R+ PP+ +
Sbjct: 119 ARGPPSRGSHLGSSRGPLPMKRGPPPRSGGPPPKRS 154
Score = 50 (22.7 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 17/49 (34%), Positives = 18/49 (36%)
Query: 184 RSPQDQRSP---SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
R P R SPRD + YS SR D A P D YR
Sbjct: 184 REPMPSRRDVYMSPRDDGYSTKDGYSSRDYPSSRDTRDYAPPPRDYAYR 232
Score = 43 (20.2 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 354 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 383
>UNIPROTKB|H3BT71 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL683813 InterPro:IPR012604
Pfam:PF08081 HGNC:HGNC:9910 ChiTaRS:RBMX ProteinModelPortal:H3BT71
SMR:H3BT71 Ensembl:ENST00000562646 Bgee:H3BT71 Uniprot:H3BT71
Length = 296
Score = 98 (39.6 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 44 (20.5 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
>UNIPROTKB|Q4R7F0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9541 "Macaca fascicularis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AB168869 ProteinModelPortal:Q4R7F0 SMR:Q4R7F0
Uniprot:Q4R7F0
Length = 391
Score = 98 (39.6 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 44 (20.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 43 (20.2 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 42 (19.8 bits), Expect = 4.2e-05, Sum P(3) = 4.2e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 54 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQDRGLPPSM 353
>UNIPROTKB|K7GRX3 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00700000104336 InterPro:IPR012604
Pfam:PF08081 EMBL:FP102148 Ensembl:ENSSSCT00000035747
Uniprot:K7GRX3
Length = 306
Score = 98 (39.6 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 207 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 243
Score = 45 (20.9 bits), Expect = 0.00028, Sum P(2) = 0.00028
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 223 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 275
Score = 44 (20.5 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
R P R +G SR P+ GP R+ PP+ +
Sbjct: 119 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 164
>UNIPROTKB|Q5ZML3 [details] [associations]
symbol:SRSF1 "Serine/arginine-rich splicing factor 1"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295
KO:K12890 CTD:6426 EMBL:AJ719371 IPI:IPI00573494
RefSeq:NP_001107213.1 UniGene:Gga.4490 ProteinModelPortal:Q5ZML3
SMR:Q5ZML3 STRING:Q5ZML3 PRIDE:Q5ZML3 GeneID:772264 KEGG:gga:772264
eggNOG:NOG302520 InParanoid:Q5ZML3 NextBio:20922455 Uniprot:Q5ZML3
Length = 257
Score = 113 (44.8 bits), Expect = 4.6e-05, P = 4.6e-05
Identities = 26/55 (47%), Positives = 29/55 (52%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPG 59
FAFVEF DPRDA+DA Y +G D DG R+ VEF G G P G
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRG 110
>UNIPROTKB|F1NCV3 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00577087 Ensembl:ENSGALT00000038019 ArrayExpress:F1NCV3
Uniprot:F1NCV3
Length = 163
Score = 107 (42.7 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 20/38 (52%), Positives = 26/38 (68%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+K F FVEF D RDADDA Y LNG+++ R+ +E A
Sbjct: 35 LKNGFGFVEFEDHRDADDAIYELNGKELCDERVTIEHA 72
>UNIPROTKB|B4DN89 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471099 EMBL:AC005837 UniGene:Hs.584801 HGNC:HGNC:10783
ChiTaRS:SRSF2 EMBL:AK297813 IPI:IPI01011463
ProteinModelPortal:B4DN89 STRING:B4DN89 PRIDE:B4DN89
Ensembl:ENST00000508921 UCSC:uc010wtg.2 ArrayExpress:B4DN89
Bgee:B4DN89 Uniprot:B4DN89
Length = 209
Score = 97 (39.2 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP S R
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPPRSPR 111
Score = 47 (21.6 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +R R R ++ S R KSRS
Sbjct: 108 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 139
Score = 45 (20.9 bits), Expect = 7.8e-05, Sum P(2) = 7.8e-05
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RSP P +R++ S SP +SP ++
Sbjct: 172 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 204
Score = 37 (18.1 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 17/49 (34%), Positives = 20/49 (40%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPP 232
RS RS S R A S+ S +SRS R+ RSPP
Sbjct: 138 RSRTRSRSRSTSKSRSARRSKSKSSSVSRSRS----RSRSRSRS-RSPP 181
>MGI|MGI:1343045 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X linked-like-1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006376 "mRNA splice site
selection" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP;IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=ISO] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=ISO]
[GO:0051260 "protein homooligomerization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1343045 GO:GO:0008380 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682 GO:GO:0006366
GO:GO:0006509 GO:GO:0001047 GO:GO:0005719 GO:GO:0071347
GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026
GO:GO:0000381 GO:GO:0044530 HSSP:Q61474
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
CTD:494115 EMBL:AF031568 EMBL:AK041927 EMBL:BC011441 EMBL:BC089350
IPI:IPI00663587 RefSeq:NP_001239018.1 RefSeq:NP_033059.2
UniGene:Mm.24718 ProteinModelPortal:Q91VM5 SMR:Q91VM5 IntAct:Q91VM5
STRING:Q91VM5 PhosphoSite:Q91VM5 PaxDb:Q91VM5 PRIDE:Q91VM5
Ensembl:ENSMUST00000049245 GeneID:19656 KEGG:mmu:19656
UCSC:uc009mhz.1 InParanoid:Q91VM5 OMA:ILLMKDR OrthoDB:EOG4001KF
NextBio:296934 Bgee:Q91VM5 Genevestigator:Q91VM5 Uniprot:Q91VM5
Length = 388
Score = 98 (39.6 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 205 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 241
Score = 48 (22.0 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 19/54 (35%), Positives = 23/54 (42%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S S SR D DG DR+Y P
Sbjct: 221 DYPSSRDTRDYAPPPRDYTYRDYSHSSSRDDYPSRG-YGDRDGYGRDRDYSDHP 273
Score = 43 (20.2 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 357 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 386
Score = 41 (19.5 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 54 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 295 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 350
>UNIPROTKB|F1RQ90 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071347 "cellular response to interleukin-1"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0070062 "extracellular vesicular exosome"
evidence=IEA] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=IEA] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=IEA] [GO:0006366
"transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005719 "nuclear euchromatin" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0001047 "core promoter binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 GO:GO:0070062
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0000381
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
CTD:27316 KO:K12885 OMA:PFFKGMS EMBL:FP102148 RefSeq:NP_001231025.1
UniGene:Ssc.97220 Ensembl:ENSSSCT00000013889
Ensembl:ENSSSCT00000034598 GeneID:100158042 KEGG:ssc:100158042
Uniprot:F1RQ90
Length = 390
Score = 98 (39.6 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 207 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 243
Score = 45 (20.9 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 223 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 275
Score = 44 (20.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
R P R +G SR P+ GP R+ PP+ +
Sbjct: 119 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 164
Score = 43 (20.2 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 359 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 388
Score = 41 (19.5 bits), Expect = 5.2e-05, Sum P(3) = 5.2e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 54 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 297 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 352
>UNIPROTKB|P38159 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA;NAS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0044530 "supraspliceosomal complex" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0001047 "core promoter binding"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IDA] [GO:0071347 "cellular response to interleukin-1"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0006366 "transcription from
RNA polymerase II promoter" evidence=IDA] [GO:0005719 "nuclear
euchromatin" evidence=IDA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 Reactome:REACT_1675 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0000398
GO:GO:0071013 EMBL:AL683813 EMBL:CH471150 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:Z23064 EMBL:AF266723
EMBL:AF266720 EMBL:AF266721 EMBL:AF266722 EMBL:AY464692
EMBL:AK096015 EMBL:AK304868 EMBL:BC006550 EMBL:BC007435
IPI:IPI00304692 IPI:IPI00552938 RefSeq:NP_001158275.1
RefSeq:NP_002130.2 UniGene:Hs.380118 UniGene:Hs.710162
ProteinModelPortal:P38159 SMR:P38159 DIP:DIP-34447N IntAct:P38159
MINT:MINT-5000999 STRING:P38159 PhosphoSite:P38159 DMDM:23503093
SWISS-2DPAGE:P38159 PaxDb:P38159 PRIDE:P38159 DNASU:27316
Ensembl:ENST00000320676 Ensembl:ENST00000431446 GeneID:27316
KEGG:hsa:27316 UCSC:uc004fad.1 GeneCards:GC0XM135951 HGNC:HGNC:9910
MIM:300199 neXtProt:NX_P38159 PharmGKB:PA34277 HOGENOM:HOG000070250
InParanoid:P38159 PhylomeDB:P38159 ChiTaRS:RBMX GenomeRNAi:27316
NextBio:50322 ArrayExpress:P38159 Bgee:P38159 CleanEx:HS_RBMX
Genevestigator:P38159 GermOnline:ENSG00000147274 Uniprot:P38159
Length = 391
Score = 98 (39.6 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 44 (20.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 43 (20.2 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 41 (19.5 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 54 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 353
>UNIPROTKB|A5A6M3 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9598 "Pan troglodytes" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0003682
GO:GO:0006366 GO:GO:0006509 GO:GO:0001047 GO:GO:0005719
GO:GO:0071347 GO:GO:0071013 GO:GO:0048025 eggNOG:COG0724
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 EMBL:AB222151 RefSeq:NP_001128678.1 UniGene:Ptr.2579
ProteinModelPortal:A5A6M3 SMR:A5A6M3 PRIDE:A5A6M3 GeneID:738482
KEGG:ptr:738482 NextBio:20905775 Uniprot:A5A6M3
Length = 391
Score = 98 (39.6 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 44 (20.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
R P R +G SR P+ GP R+ PP+ +
Sbjct: 120 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 165
Score = 43 (20.2 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 41 (19.5 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 54 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 353
>UNIPROTKB|D3JUI8 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome,
N-terminally processed" species:9913 "Bos taurus" [GO:0071347
"cellular response to interleukin-1" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] [GO:0070062
"extracellular vesicular exosome" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0044530 "supraspliceosomal complex"
evidence=IEA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0005719 "nuclear euchromatin"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0001047 "core promoter
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 InterPro:IPR012604 Pfam:PF08081 CTD:27316
KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK EMBL:DAAA02067753
EMBL:GU304600 IPI:IPI00706784 RefSeq:NP_001165510.1 UniGene:Bt.7342
Ensembl:ENSBTAT00000017696 GeneID:509591 KEGG:bta:509591
NextBio:20869035 Uniprot:D3JUI8
Length = 391
Score = 98 (39.6 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 45 (20.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 276
Score = 43 (20.2 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 41 (19.5 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 54 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 353
>UNIPROTKB|E2R068 [details] [associations]
symbol:RBMX "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OMA:PFFKGMS EMBL:AAEX03026954 Ensembl:ENSCAFT00000030124
Uniprot:E2R068
Length = 392
Score = 98 (39.6 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 26/56 (46%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA +NG+ +DG I VE A S E RGPPP
Sbjct: 50 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 99
Score = 53 (23.7 bits), Expect = 9.3e-05, Sum P(2) = 9.3e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 209 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 245
Score = 45 (20.9 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 225 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YSDRDGYGRDRDYSDHP 277
Score = 44 (20.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 12/46 (26%), Positives = 17/46 (36%)
Query: 190 RSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEEN 235
R P R +G SR P+ GP R+ PP+ +
Sbjct: 121 RGPPSRGGHMDDGGYSMNFNMSSSRGPLPVKRGPPPRSGGPPPKRS 166
Score = 43 (20.2 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 361 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 390
Score = 41 (19.5 bits), Expect = 5.3e-05, Sum P(3) = 5.3e-05
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 54 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 299 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 354
>UNIPROTKB|P04593 [details] [associations]
symbol:gag "Gag polyprotein" species:11682 "Human
immunodeficiency virus type 1 (BH5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 EMBL:K02012
ProteinModelPortal:P04593 SMR:P04593 Uniprot:P04593
Length = 512
Score = 116 (45.9 bits), Expect = 6.0e-05, P = 6.0e-05
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+CKA K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHIARNCKAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|Q9BRL6 [details] [associations]
symbol:SRSF8 "Serine/arginine-rich splicing factor 8"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 EMBL:CH471065
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K12891 OrthoDB:EOG4D26RH EMBL:AF031165
EMBL:AF031166 EMBL:AK023379 EMBL:AK312514 EMBL:BC057783
IPI:IPI00477842 IPI:IPI00856075 RefSeq:NP_115285.1
UniGene:Hs.476680 PDB:2DNM PDBsum:2DNM ProteinModelPortal:Q9BRL6
SMR:Q9BRL6 STRING:Q9BRL6 PhosphoSite:Q9BRL6 DMDM:74761217
PaxDb:Q9BRL6 PRIDE:Q9BRL6 GeneID:10929 KEGG:hsa:10929
UCSC:uc001pff.3 CTD:10929 GeneCards:GC11P094801 H-InvDB:HIX0010038
HGNC:HGNC:16988 MIM:603269 neXtProt:NX_Q9BRL6 PharmGKB:PA165543687
EvolutionaryTrace:Q9BRL6 GenomeRNAi:10929 NextBio:41519
CleanEx:HS_SFRS2B Genevestigator:Q9BRL6 Uniprot:Q9BRL6
Length = 282
Score = 98 (39.6 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 23/59 (38%), Positives = 31/59 (52%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSG 61
R FAFV F D RDA DA +++G ++DG + V+ A SR+ RG G G
Sbjct: 55 RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGG 113
Score = 50 (22.7 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 16/33 (48%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
R P RS R R + GS YS SP SRSP
Sbjct: 137 RGPSCSRS---RSRSRYRGSRYSRSPY--SRSP 164
Score = 44 (20.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 191 SPSPRDRRQANGSEYSGSPRGKSR 214
S SP R + S YS SP +SR
Sbjct: 156 SRSPYSRSPYSRSRYSRSPYSRSR 179
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 100 (40.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 27/56 (48%), Positives = 29/56 (51%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA DA LNG+ +DG I VE A SR RGPPP
Sbjct: 49 RGFAFVTFESPADAKDAARELNGKALDGKPIKVEQATKPSFSAP-SR----RGPPP 99
Score = 51 (23.0 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 18/47 (38%), Positives = 21/47 (44%)
Query: 192 PSPRDR---RQANGSEYSGSPRGK---SRSPVDDADGPEDRNYRSPP 232
P PR R R GS GS RG+ R P + GP + RS P
Sbjct: 99 PPPRSRGPPRGLRGSRGGGSSRGQMPLKRGPPPRSGGPPPK--RSAP 143
Score = 50 (22.7 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 15/50 (30%), Positives = 21/50 (42%)
Query: 186 PQDQRSPSPRDRRQANGSE-YSGSPRGKSRSPVDDADGPEDRNYRSPPEE 234
P+ PS RD + + YSG R S D + R+Y PP +
Sbjct: 169 PRRDPIPSRRDVYMSPRDDGYSGKDRYDGYSGRDYGSSRDSRDYGPPPRD 218
Score = 49 (22.3 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 17/45 (37%), Positives = 19/45 (42%)
Query: 185 SPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SP+D S +DR YSG G SR D P D YR
Sbjct: 183 SPRDD-GYSGKDRYDG----YSGRDYGSSRDSRDYGPPPRDYAYR 222
>FB|FBgn0034802 [details] [associations]
symbol:CG3800 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=ISS;NAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
EMBL:AE013599 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 KO:K09250
GeneTree:ENSGT00510000047065 OMA:QCYNCGE EMBL:AY075371
EMBL:AY118596 RefSeq:NP_001188992.1 RefSeq:NP_611739.1
UniGene:Dm.5513 ProteinModelPortal:Q8T8R1 SMR:Q8T8R1
MINT:MINT-943666 STRING:Q8T8R1 PaxDb:Q8T8R1 PRIDE:Q8T8R1
EnsemblMetazoa:FBtr0071994 EnsemblMetazoa:FBtr0303464 GeneID:37646
KEGG:dme:Dmel_CG3800 UCSC:CG3800-RA FlyBase:FBgn0034802
InParanoid:Q8T8R1 OrthoDB:EOG40RXZ0 PhylomeDB:Q8T8R1
GenomeRNAi:37646 NextBio:804714 Bgee:Q8T8R1 Uniprot:Q8T8R1
Length = 165
Score = 106 (42.4 bits), Expect = 7.9e-05, P = 7.9e-05
Identities = 19/48 (39%), Positives = 25/48 (52%)
Query: 51 YLGRGPPPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+ R P + RC+ C GH ++DC D CYRC + GH RNC
Sbjct: 65 HFARACPEEAERCYRCNGIGHISKDCTQAD-NPTCYRCNKTGHWVRNC 111
Score = 105 (42.0 bits), Expect = 0.00011, P = 0.00011
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 63 CFNCGIDGHWARDC-----KAGDWKNKCYRCGERGHIERNCQNSPK 103
C+ C GHW R+C + G CY+C GHI +NC + K
Sbjct: 98 CYRCNKTGHWVRNCPEAVNERGPTNVSCYKCNRTGHISKNCPETSK 143
>UNIPROTKB|P30352 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9031 "Gallus gallus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427
EMBL:X62446 IPI:IPI00591371 PIR:B42701 RefSeq:NP_001001305.1
UniGene:Gga.9923 ProteinModelPortal:P30352 SMR:P30352 PRIDE:P30352
GeneID:396195 KEGG:gga:396195 NextBio:20816247 Uniprot:P30352
Length = 221
Score = 92 (37.4 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 53 (23.7 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RSP P +R++N S SP +SP ++
Sbjct: 184 RSRSRSRSPPPTSKRESNSRSRSKSP---PKSPEEE 216
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRS 215
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
>UNIPROTKB|P05887 [details] [associations]
symbol:gag "Gag polyprotein" species:11687 "Human
immunodeficiency virus type 1 (CDC-451 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 EMBL:M13136
PIR:A25523 ProteinModelPortal:P05887 SMR:P05887 Uniprot:P05887
Length = 500
Score = 115 (45.5 bits), Expect = 8.4e-05, P = 8.4e-05
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+CKA K C++CG GH ++C
Sbjct: 391 KCFNCGKEGHIARNCKAPR-KKGCWKCGREGHQMKDC 426
>UNIPROTKB|Q96E39 [details] [associations]
symbol:RBMXL1 "RNA binding motif protein, X-linked-like-1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471097 GO:GO:0030529
eggNOG:COG0724 EMBL:AL139416 HSSP:Q14103 UniGene:Hs.481898
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 KO:K12885 EMBL:AL832554 EMBL:BC012942 IPI:IPI00061178
RefSeq:NP_001156008.1 RefSeq:NP_062556.2 ProteinModelPortal:Q96E39
SMR:Q96E39 IntAct:Q96E39 STRING:Q96E39 PhosphoSite:Q96E39
PaxDb:Q96E39 PRIDE:Q96E39 Ensembl:ENST00000321792
Ensembl:ENST00000399794 GeneID:494115 KEGG:hsa:494115
UCSC:uc001dms.3 CTD:494115 GeneCards:GC01M089446 HGNC:HGNC:25073
neXtProt:NX_Q96E39 PharmGKB:PA165752300 OMA:STIYVEN
PhylomeDB:Q96E39 GenomeRNAi:494115 NextBio:255993
ArrayExpress:Q96E39 Bgee:Q96E39 Uniprot:Q96E39
Length = 390
Score = 98 (39.6 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 29/71 (40%), Positives = 32/71 (45%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP---G 59
R FAFV F P DA DA +NG+ +DG I VE A R G PPP G
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSF----ERGRHGPPPPPRSRG 104
Query: 60 SGRCFNCGIDG 70
R F G G
Sbjct: 105 PPRGFGAGRGG 115
Score = 53 (23.7 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 44 (20.5 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 18/54 (33%), Positives = 22/54 (40%)
Query: 182 DERSPQDQR--SPSPRDRRQANGSEYSGSPRGKSRSPVDDADG-PEDRNYRSPP 232
D S +D R +P PRD + S SR D DG DR+Y P
Sbjct: 224 DYPSSRDTRDYAPPPRDYTYRDYGHSSSRDDYPSRG-YGDRDGYGRDRDYSDHP 276
>UNIPROTKB|P05960 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11687 "Human
immunodeficiency virus type 1 (CDC-451 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0030430 GO:GO:0016020 GO:GO:0046872 GO:GO:0005198
GO:GO:0008270 GO:GO:0006508 GO:GO:0003723 GO:GO:0020002
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0042025 GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:M13136 InterPro:IPR018061 Pfam:PF00077
GO:GO:0046797 ProteinModelPortal:P05960 SMR:P05960 Uniprot:P05960
Length = 550
Score = 115 (45.5 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 19/37 (51%), Positives = 26/37 (70%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+CKA K C++CG GH ++C
Sbjct: 391 KCFNCGKEGHIARNCKAPR-KKGCWKCGREGHQMKDC 426
>UNIPROTKB|E1BVJ8 [details] [associations]
symbol:SRSF5A "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104103 EMBL:AADN02003170 EMBL:AADN02003171
IPI:IPI00823174 ProteinModelPortal:E1BVJ8
Ensembl:ENSGALT00000015443 OMA:FEDSRNH ArrayExpress:E1BVJ8
Uniprot:E1BVJ8
Length = 254
Score = 105 (42.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 21/39 (53%), Positives = 27/39 (69%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDV-DGSRIIVEFA 38
+K F FVEF D RDADDA Y LNG+++ D R+ +E A
Sbjct: 35 LKNGFGFVEFEDHRDADDAIYELNGKELCDERRVTIEHA 73
Score = 36 (17.7 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSP 216
RS RS S R R ++ S S R +SR+P
Sbjct: 186 RSRSRSRSRS-RSRSRSRSRSRSRS-RSRSRTP 216
>FB|FBgn0011640 [details] [associations]
symbol:lark "lark" species:7227 "Drosophila melanogaster"
[GO:0009790 "embryo development" evidence=IMP] [GO:0008062
"eclosion rhythm" evidence=NAS;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=NAS;IMP] [GO:0045804 "negative regulation of
eclosion" evidence=IMP] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0045475 "locomotor rhythm" evidence=IMP;TAS]
[GO:0007562 "eclosion" evidence=TAS] [GO:0040011 "locomotion"
evidence=TAS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0003723 "RNA binding" evidence=NAS] [GO:0007303
"cytoplasmic transport, nurse cell to oocyte" evidence=IMP]
[GO:0008104 "protein localization" evidence=IMP] [GO:0030036 "actin
cytoskeleton organization" evidence=IMP] [GO:0007067 "mitosis"
evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR000504 InterPro:IPR001878 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00098 PROSITE:PS50102 PROSITE:PS50158
SMART:SM00343 SMART:SM00360 GO:GO:0005737 GO:GO:0008104
EMBL:AE014296 GO:GO:0007067 GO:GO:0000166 GO:GO:0046872
GO:GO:0030036 GO:GO:0008270 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0009790 GO:GO:0007303 GO:GO:0045475 Gene3D:4.10.60.10
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 GO:GO:0008062 EMBL:U59476
EMBL:AY061458 RefSeq:NP_523957.1 RefSeq:NP_729237.1
RefSeq:NP_729238.1 RefSeq:NP_729239.1 RefSeq:NP_729240.1
UniGene:Dm.7078 ProteinModelPortal:Q94901 SMR:Q94901
MINT:MINT-786921 STRING:Q94901 PaxDb:Q94901 PRIDE:Q94901
EnsemblMetazoa:FBtr0076841 EnsemblMetazoa:FBtr0076842
EnsemblMetazoa:FBtr0076843 EnsemblMetazoa:FBtr0076844
EnsemblMetazoa:FBtr0076845 GeneID:38811 KEGG:dme:Dmel_CG8597
UCSC:CG8597-RA CTD:38811 FlyBase:FBgn0011640 eggNOG:NOG294108
GeneTree:ENSGT00390000020883 InParanoid:Q94901 KO:K13187
OMA:GGHWSKE OrthoDB:EOG4DV42Z PhylomeDB:Q94901 GenomeRNAi:38811
NextBio:810485 Bgee:Q94901 GermOnline:CG8597 GO:GO:0045804
Uniprot:Q94901
Length = 352
Score = 105 (42.0 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R++ FV D DA LNGR VDG + V+ + R G G P +
Sbjct: 119 RNYGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSRV------RPKPGMGDPE---Q 169
Query: 63 CFNCGIDGHWARDC 76
C+ CG GHW+++C
Sbjct: 170 CYRCGRSGHWSKEC 183
Score = 41 (19.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 182 DER--SPQDQRSPSPRDRRQA 200
DER S + R PSP RR A
Sbjct: 330 DERMISSRGMRGPSPPGRRYA 350
Score = 40 (19.1 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 189 QRSPSPRDRRQANGSEYSGSP 209
+RSP P R +NG GSP
Sbjct: 298 RRSPPPP--RSSNGMSRYGSP 316
>UNIPROTKB|P04591 [details] [associations]
symbol:gag "Gag polyprotein" species:11706 "HIV-1
M:B_HXB2R" [GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:K03455 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 RefSeq:NP_057850.1
PDB:1TSQ PDB:1TSU PDBsum:1TSQ PDBsum:1TSU ProteinModelPortal:P04591
SMR:P04591 IntAct:P04591 EvolutionaryTrace:P04591 Uniprot:P04591
Length = 500
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHTARNCRAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|P12494 [details] [associations]
symbol:gag "Gag polyprotein" species:11694 "Human
immunodeficiency virus type 1 (JH3 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 EMBL:M21137
ProteinModelPortal:P12494 SMR:P12494 Uniprot:P12494
Length = 500
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHLARNCRAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|Q77YG1 [details] [associations]
symbol:gag "Gag" species:11676 "Human immunodeficiency
virus 1" [GO:0006754 "ATP biosynthetic process" evidence=IMP]
[GO:0060550 "positive regulation of fructose 1,6-bisphosphate
1-phosphatase activity" evidence=IDA] [GO:0060559 "positive
regulation of calcidiol 1-monooxygenase activity" evidence=IMP]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0006754
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0042025
GO:GO:0019028 EMBL:AF033819 GO:GO:0019076 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 InterPro:IPR014817 Pfam:PF08705
RefSeq:NP_057850.1 GO:GO:0060559 GO:GO:0060550 EMBL:EF553538
PDB:3NTE PDBsum:3NTE ProteinModelPortal:Q77YG1 SMR:Q77YG1
ChEMBL:CHEMBL3556 EvolutionaryTrace:Q77YG1 Uniprot:Q77YG1
Length = 500
Score = 114 (45.2 bits), Expect = 0.00011, P = 0.00011
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHTARNCRAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|P04594 [details] [associations]
symbol:gag "Gag polyprotein" species:11697 "Human
immunodeficiency virus type 1 (MAL ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:X04415 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:T01667
ProteinModelPortal:P04594 SMR:P04594 Uniprot:P04594
Length = 505
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 397 KCFNCGKEGHLARNCRAPR-KKGCWKCGKEGHQMKDC 432
>UNIPROTKB|P03347 [details] [associations]
symbol:gag "Gag polyprotein" species:11678 "Human
immunodeficiency virus type 1 BH10" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
EMBL:M15654 EMBL:K02083 EMBL:X01762 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:A03945 PIR:A03948
ProteinModelPortal:P03347 SMR:P03347 IntAct:P03347 Uniprot:P03347
Length = 512
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHTARNCRAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|P12498 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11694 "Human
immunodeficiency virus type 1 (JH3 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0030430 GO:GO:0016020 GO:GO:0046872 GO:GO:0005198
GO:GO:0008270 GO:GO:0006508 GO:GO:0003723 GO:GO:0020002
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0042025 GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:M21137 InterPro:IPR018061 Pfam:PF00077
GO:GO:0046797 ProteinModelPortal:P12498 SMR:P12498 Uniprot:P12498
Length = 532
Score = 114 (45.2 bits), Expect = 0.00012, P = 0.00012
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHLARNCRAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|P18800 [details] [associations]
symbol:gag "Gag polyprotein" species:11695 "Human
immunodeficiency virus type 1 (NDK ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M27323 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:JQ0065
ProteinModelPortal:P18800 SMR:P18800 Uniprot:P18800
Length = 497
Score = 113 (44.8 bits), Expect = 0.00015, P = 0.00015
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 57 PPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
P S +CFNCG +GH A++C+A K C++CG GH ++C
Sbjct: 384 PRKSIKCFNCGKEGHTAKNCRAPR-KKGCWKCGREGHQMKDC 424
>UNIPROTKB|Q70622 [details] [associations]
symbol:gag "Gag polyprotein" species:82834 "Human
immunodeficiency virus type 1 lw12.3 isolate" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:U12055 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PDB:1HVN PDB:1HVO
PDB:1U57 PDB:2ZNF PDBsum:1HVN PDBsum:1HVO PDBsum:1U57 PDBsum:2ZNF
ProteinModelPortal:Q70622 SMR:Q70622 EvolutionaryTrace:Q70622
Uniprot:Q70622
Length = 500
Score = 113 (44.8 bits), Expect = 0.00015, P = 0.00015
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHIARNCRAPR-KKGCWKCGKEGHQMKDC 426
>WB|WBGene00004700 [details] [associations]
symbol:rsp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0006898
GO:GO:0040007 GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0040011 GO:GO:0003723 GO:GO:0040035 eggNOG:COG0724
GO:GO:0006376 GO:GO:0001703 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 EMBL:AF242767 EMBL:AL132904 RefSeq:NP_499649.2
ProteinModelPortal:Q9NEW6 SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6
PRIDE:Q9NEW6 EnsemblMetazoa:Y111B2A.18.1
EnsemblMetazoa:Y111B2A.18.2 EnsemblMetazoa:Y111B2A.18.3
GeneID:176688 KEGG:cel:CELE_Y111B2A.18 UCSC:Y111B2A.18.1 CTD:176688
WormBase:Y111B2A.18 InParanoid:Q9NEW6 KO:K12890 OMA:MPRGGSE
NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 94 (38.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF D RDA+DA + +G + DG RI VEF
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEF 80
Score = 50 (22.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 184 RSPQDQR--SP--SPRDRRQANGSEYSGSPRGKSRSP 216
RSP+ +R SP SPR R + S R SRSP
Sbjct: 215 RSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSP 251
>UNIPROTKB|Q9NEW6 [details] [associations]
symbol:rsp-3 "Probable splicing factor,
arginine/serine-rich 3" species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0003723 "RNA binding"
evidence=NAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0006898 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0003723 GO:GO:0040035
eggNOG:COG0724 GO:GO:0006376 GO:GO:0001703
GeneTree:ENSGT00700000104103 HOGENOM:HOG000276234 EMBL:AF242767
EMBL:AL132904 RefSeq:NP_499649.2 ProteinModelPortal:Q9NEW6
SMR:Q9NEW6 STRING:Q9NEW6 PaxDb:Q9NEW6 PRIDE:Q9NEW6
EnsemblMetazoa:Y111B2A.18.1 EnsemblMetazoa:Y111B2A.18.2
EnsemblMetazoa:Y111B2A.18.3 GeneID:176688 KEGG:cel:CELE_Y111B2A.18
UCSC:Y111B2A.18.1 CTD:176688 WormBase:Y111B2A.18 InParanoid:Q9NEW6
KO:K12890 OMA:MPRGGSE NextBio:893608 Uniprot:Q9NEW6
Length = 258
Score = 94 (38.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF D RDA+DA + +G + DG RI VEF
Sbjct: 48 FAFVEFEDHRDAEDAVRARDGYEFDGRRIRVEF 80
Score = 50 (22.7 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 184 RSPQDQR--SP--SPRDRRQANGSEYSGSPRGKSRSP 216
RSP+ +R SP SPR R + S R SRSP
Sbjct: 215 RSPRAERRASPKYSPRRSRSRSRSRSRSRSRSASRSP 251
>UNIPROTKB|P03348 [details] [associations]
symbol:gag "Gag polyprotein" species:11686 "Human
immunodeficiency virus type 1 (BRU ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:K02013 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P03348 SMR:P03348 Uniprot:P03348
Length = 512
Score = 113 (44.8 bits), Expect = 0.00016, P = 0.00016
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHIARNCRAPR-KKGCWKCGKEGHQMKDC 426
>TAIR|locus:2078526 [details] [associations]
symbol:AT3G42860 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0009640 "photomorphogenesis"
evidence=RCA] [GO:0010212 "response to ionizing radiation"
evidence=RCA] [GO:0010388 "cullin deneddylation" evidence=RCA]
[GO:0016567 "protein ubiquitination" evidence=RCA] [GO:0016571
"histone methylation" evidence=RCA] [GO:0016579 "protein
deubiquitination" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] InterPro:IPR001878
InterPro:IPR010666 Pfam:PF00098 Pfam:PF06839 PROSITE:PS50158
SMART:SM00343 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 eggNOG:COG5082 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AL138654 EMBL:AY065276 EMBL:AY133785
IPI:IPI00532574 PIR:T47344 RefSeq:NP_189872.1 UniGene:At.28534
ProteinModelPortal:Q9M1L9 SMR:Q9M1L9 EnsemblPlants:AT3G42860.1
GeneID:823332 KEGG:ath:AT3G42860 TAIR:At3g42860
HOGENOM:HOG000006218 InParanoid:Q9M1L9 OMA:CGFFKWC PhylomeDB:Q9M1L9
ProtClustDB:CLSN2684249 ArrayExpress:Q9M1L9 Genevestigator:Q9M1L9
Uniprot:Q9M1L9
Length = 372
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 60 SGRCFNCGIDGHWARDCKA---------GDWKN-----KCYRCGERGHIERNC 98
+G CF CG GHW+RDC A G K+ +CY+CG++GH R+C
Sbjct: 267 AGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQGHWSRDC 319
Score = 109 (43.4 bits), Expect = 0.00035, P = 0.00035
Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 60 SGRCFNCGIDGHWARDC---------KAGDWKNK-----CYRCGERGHIERNCQNSP 102
SG C+ CG GHW+RDC ++G K+ CY+CG+ GH R+C SP
Sbjct: 303 SGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDC-TSP 358
>UNIPROTKB|F1ML79 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
OMA:DSQEVRE GeneTree:ENSGT00510000047308 EMBL:DAAA02021025
IPI:IPI00689669 UniGene:Bt.61596 Ensembl:ENSBTAT00000006931
Uniprot:F1ML79
Length = 271
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 59 GSGRCFNCGIDGHWARDCKA------GDWK-NKCYRCGERGHIERNCQNSPKKL 105
G+G C+ CG H CKA G++ KC+ CGE GH+ R+C ++PK L
Sbjct: 153 GTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGL 206
>UNIPROTKB|F6V033 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
CTD:84240 OMA:DSQEVRE GeneTree:ENSGT00510000047308
EMBL:AAEX03002099 RefSeq:XP_536305.1 Ensembl:ENSCAFT00000013818
GeneID:479161 KEGG:cfa:479161 Uniprot:F6V033
Length = 271
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 59 GSGRCFNCGIDGHWARDCKA------GDWK-NKCYRCGERGHIERNCQNSPKKL 105
G+G C+ CG H CKA G++ KC+ CGE GH+ R+C ++PK L
Sbjct: 153 GTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGL 206
>UNIPROTKB|Q8N567 [details] [associations]
symbol:ZCCHC9 "Zinc finger CCHC domain-containing protein
9" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0010923 "negative regulation of phosphatase activity"
evidence=IDA] InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158
SMART:SM00343 GO:GO:0046872 GO:GO:0008270 GO:GO:0003676
EMBL:CH471084 eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0010923 HOGENOM:HOG000059608 EMBL:AK314160 EMBL:AL512712
EMBL:BC032736 IPI:IPI00410284 RefSeq:NP_001124507.1
RefSeq:NP_001124508.1 RefSeq:NP_115656.1 UniGene:Hs.15536
ProteinModelPortal:Q8N567 SMR:Q8N567 IntAct:Q8N567
PhosphoSite:Q8N567 DMDM:116242852 PaxDb:Q8N567 PRIDE:Q8N567
Ensembl:ENST00000254037 Ensembl:ENST00000380199
Ensembl:ENST00000407610 Ensembl:ENST00000438268 GeneID:84240
KEGG:hsa:84240 UCSC:uc003khi.3 CTD:84240 GeneCards:GC05P080597
HGNC:HGNC:25424 HPA:HPA038404 neXtProt:NX_Q8N567
PharmGKB:PA134931870 HOVERGEN:HBG056034 InParanoid:Q8N567
OMA:DSQEVRE OrthoDB:EOG49W2G3 PhylomeDB:Q8N567 GenomeRNAi:84240
NextBio:73713 Bgee:Q8N567 CleanEx:HS_ZCCHC9 Genevestigator:Q8N567
GermOnline:ENSG00000131732 Uniprot:Q8N567
Length = 271
Score = 109 (43.4 bits), Expect = 0.00019, P = 0.00019
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 59 GSGRCFNCGIDGHWARDCKA------GDWK-NKCYRCGERGHIERNCQNSPKKL 105
G+G C+ CG H CKA G++ KC+ CGE GH+ R+C ++PK L
Sbjct: 153 GTGICYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGL 206
>UNIPROTKB|P04587 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11682 "Human
immunodeficiency virus type 1 (BH5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 EMBL:K02012 GO:GO:0075732 Gene3D:1.10.10.200
InterPro:IPR017856 SUPFAM:SSF50122 SUPFAM:SSF46919
InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533 GO:GO:0039651
GO:GO:0046797 Gene3D:2.30.30.10 PDB:1BDL PDB:1BDQ PDB:1BDR PDB:1FEJ
PDB:1FF0 PDB:1FFF PDB:1FFI PDB:1FG6 PDB:1FG8 PDB:1FGC PDB:1G2K
PDB:1HPV PDB:1HVJ PDB:1HVS PDB:1K1T PDB:1K1U PDB:1K2B PDB:1K2C
PDB:1ODX PDB:1Q9P PDB:1TCX PDB:1WJE PDB:1WJF PDB:2AOC PDB:2AOD
PDB:2AOE PDB:2AOF PDB:2AOG PDB:2AOH PDB:2AOI PDB:2AOJ PDB:2AVM
PDB:2AVO PDB:2AVQ PDB:2AVS PDB:2AVV PDB:2BPV PDB:2BPW PDB:2BPX
PDB:2BPY PDB:2BPZ PDB:2F80 PDB:2F81 PDB:2F8G PDB:2G3L PDB:2NMY
PDB:2NMZ PDB:2NNK PDB:2NNP PDB:2R38 PDB:2R3T PDB:2R3W PDB:2Z54
PDB:3B7V PDB:3B80 PDB:3BC4 PDB:3BGB PDB:3BGC PDB:3CYW PDB:3CYX
PDB:3D1X PDB:3D1Y PDB:3D1Z PDB:3D20 PDB:3OXC PDBsum:1BDL
PDBsum:1BDQ PDBsum:1BDR PDBsum:1FEJ PDBsum:1FF0 PDBsum:1FFF
PDBsum:1FFI PDBsum:1FG6 PDBsum:1FG8 PDBsum:1FGC PDBsum:1G2K
PDBsum:1HPV PDBsum:1HVJ PDBsum:1HVS PDBsum:1K1T PDBsum:1K1U
PDBsum:1K2B PDBsum:1K2C PDBsum:1ODX PDBsum:1Q9P PDBsum:1TCX
PDBsum:1WJE PDBsum:1WJF PDBsum:2AOC PDBsum:2AOD PDBsum:2AOE
PDBsum:2AOF PDBsum:2AOG PDBsum:2AOH PDBsum:2AOI PDBsum:2AOJ
PDBsum:2AVM PDBsum:2AVO PDBsum:2AVQ PDBsum:2AVS PDBsum:2AVV
PDBsum:2BPV PDBsum:2BPW PDBsum:2BPX PDBsum:2BPY PDBsum:2BPZ
PDBsum:2F80 PDBsum:2F81 PDBsum:2F8G PDBsum:2G3L PDBsum:2NMY
PDBsum:2NMZ PDBsum:2NNK PDBsum:2NNP PDBsum:2R38 PDBsum:2R3T
PDBsum:2R3W PDBsum:2Z54 PDBsum:3B7V PDBsum:3B80 PDBsum:3BC4
PDBsum:3BGB PDBsum:3BGC PDBsum:3CYW PDBsum:3CYX PDBsum:3D1X
PDBsum:3D1Y PDBsum:3D1Z PDBsum:3D20 PDBsum:3OXC
ProteinModelPortal:P04587 SMR:P04587 EvolutionaryTrace:P04587
Uniprot:P04587
Length = 1447
Score = 116 (45.9 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 19/37 (51%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+CKA K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHIARNCKAPR-KKGCWKCGKEGHQMKDC 426
Score = 37 (18.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 192 PSPRDRRQANGSEYSGSPRGKSRSP 216
PS + +G +Y+ P+G SP
Sbjct: 732 PSINNETPGSGYQYNVLPQGWKGSP 756
>UNIPROTKB|J3QL05 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich-splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC005837 HGNC:HGNC:10783 ChiTaRS:SRSF2 Ensembl:ENST00000583836
Uniprot:J3QL05
Length = 130
Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
Identities = 23/58 (39%), Positives = 31/58 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 60
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP S
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPPRS 109
>UNIPROTKB|P04592 [details] [associations]
symbol:gag "Gag polyprotein" species:11689 "Human
immunodeficiency virus type 1 (ELI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:K03454 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P04592 SMR:P04592 Uniprot:P04592
Length = 500
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C+RCG+ GH ++C
Sbjct: 392 KCFNCGKEGHIAKNCRAPR-KKGCWRCGKEGHQLKDC 427
>UNIPROTKB|P03349 [details] [associations]
symbol:gag "Gag polyprotein" species:11685 "HIV-1
M:B_ARV2/SF2" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
EMBL:K02007 GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
PIR:A03947 ProteinModelPortal:P03349 SMR:P03349 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 Uniprot:P03349
Length = 502
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C+RCG GH ++C
Sbjct: 393 KCFNCGKEGHIAKNCRAPR-KKGCWRCGREGHQMKDC 428
>UNIPROTKB|P20873 [details] [associations]
symbol:gag "Gag polyprotein" species:11688 "Human
immunodeficiency virus type 1 (JRCSF ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M38429 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P20873 SMR:P20873 Uniprot:P20873
Length = 504
Score = 112 (44.5 bits), Expect = 0.00022, P = 0.00022
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH + C
Sbjct: 391 KCFNCGKEGHIARNCRAPR-KKGCWKCGKEGHQMKEC 426
>UNIPROTKB|Q06A98 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0016607 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 KO:K12891 CTD:6427 EMBL:DQ972966
RefSeq:NP_001070697.1 UniGene:Ssc.1002 ProteinModelPortal:Q06A98
SMR:Q06A98 GeneID:768117 KEGG:ssc:768117 Uniprot:Q06A98
Length = 221
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRS 215
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPASKRESKSRSRSKSP---PKSPEEE 216
>UNIPROTKB|Q3MHR5 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008380
GO:GO:0000166 GO:GO:0016607 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 EMBL:BC105138
IPI:IPI00690339 RefSeq:NP_001029490.1 UniGene:Bt.2466
ProteinModelPortal:Q3MHR5 SMR:Q3MHR5 STRING:Q3MHR5 PRIDE:Q3MHR5
Ensembl:ENSBTAT00000024299 GeneID:508312 KEGG:bta:508312 CTD:6427
InParanoid:Q3MHR5 OMA:DHRRRTR OrthoDB:EOG4D26RH NextBio:20868455
Uniprot:Q3MHR5
Length = 221
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRS 215
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
>UNIPROTKB|Q01130 [details] [associations]
symbol:SRSF2 "Serine/arginine-rich splicing factor 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0016605 "PML body"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0003714
"transcription corepressor activity" evidence=NAS] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0003714
GO:GO:0000166 GO:GO:0016607 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 EMBL:CH471099 GO:GO:0006406
GO:GO:0000398 Reactome:REACT_1788 GO:GO:0006369 GO:GO:0031124
HOVERGEN:HBG107480 Reactome:REACT_78 eggNOG:NOG254270 KO:K12891
CTD:6427 OMA:DHRRRTR EMBL:M90104 EMBL:X62447 EMBL:X75755
EMBL:BT007250 EMBL:AK124792 EMBL:BC000339 EMBL:BC001303
EMBL:BC070086 EMBL:L03693 IPI:IPI00005978 RefSeq:NP_001182356.1
RefSeq:NP_003007.2 UniGene:Hs.584801 PDB:2KN4 PDB:2LEA PDB:2LEB
PDB:2LEC PDBsum:2KN4 PDBsum:2LEA PDBsum:2LEB PDBsum:2LEC
ProteinModelPortal:Q01130 SMR:Q01130 IntAct:Q01130
MINT:MINT-2863034 STRING:Q01130 PhosphoSite:Q01130 DMDM:60416437
PaxDb:Q01130 PeptideAtlas:Q01130 PRIDE:Q01130 DNASU:6427
Ensembl:ENST00000359995 Ensembl:ENST00000392485
Ensembl:ENST00000452355 Ensembl:ENST00000585202 GeneID:6427
KEGG:hsa:6427 UCSC:uc002jsv.3 GeneCards:GC17M074731 HGNC:HGNC:10783
MIM:600813 neXtProt:NX_Q01130 PharmGKB:PA35699 InParanoid:Q01130
ChiTaRS:SRSF2 EvolutionaryTrace:Q01130 GenomeRNAi:6427
NextBio:24961 ArrayExpress:Q01130 Bgee:Q01130 CleanEx:HS_SFRS2
Genevestigator:Q01130 GermOnline:ENSG00000161547 Uniprot:Q01130
Length = 221
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRS 215
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
>MGI|MGI:98284 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=ISO;IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:98284 GO:GO:0008380 GO:GO:0000166 GO:GO:0016607
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
HOVERGEN:HBG107480 UniGene:Mm.429312 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OMA:DHRRRTR
OrthoDB:EOG4D26RH ChiTaRS:SRSF2 EMBL:U14648 EMBL:AF077858
EMBL:AK086103 EMBL:AK088042 EMBL:AK165670 EMBL:BC005493 EMBL:X98511
IPI:IPI00121135 PIR:A55335 RefSeq:NP_035488.1 UniGene:Mm.21841
UniGene:Mm.469331 ProteinModelPortal:Q62093 SMR:Q62093
DIP:DIP-44831N IntAct:Q62093 STRING:Q62093 PhosphoSite:Q62093
PaxDb:Q62093 PRIDE:Q62093 Ensembl:ENSMUST00000092404
Ensembl:ENSMUST00000136914 GeneID:20382 KEGG:mmu:20382
NextBio:298298 Bgee:Q62093 CleanEx:MM_SFRS2 Genevestigator:Q62093
GermOnline:ENSMUSG00000034120 Uniprot:Q62093
Length = 221
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRS 215
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
>RGD|1359422 [details] [associations]
symbol:Srsf2 "serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=IEA;ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA;ISO] [GO:0016605 "PML body" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1359422 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107480
eggNOG:NOG254270 GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427
OrthoDB:EOG4D26RH EMBL:BC058508 IPI:IPI00389420
RefSeq:NP_001009720.1 UniGene:Rn.136644 ProteinModelPortal:Q6PDU1
SMR:Q6PDU1 STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRS 215
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
>UNIPROTKB|Q6PDU1 [details] [associations]
symbol:Srsf2 "Serine/arginine-rich splicing factor 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1359422 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG107480 eggNOG:NOG254270
GeneTree:ENSGT00700000104403 KO:K12891 CTD:6427 OrthoDB:EOG4D26RH
EMBL:BC058508 IPI:IPI00389420 RefSeq:NP_001009720.1
UniGene:Rn.136644 ProteinModelPortal:Q6PDU1 SMR:Q6PDU1
STRING:Q6PDU1 PhosphoSite:Q6PDU1 PRIDE:Q6PDU1
Ensembl:ENSRNOT00000067739 GeneID:494445 KEGG:rno:494445
NextBio:697633 ArrayExpress:Q6PDU1 Genevestigator:Q6PDU1
Uniprot:Q6PDU1
Length = 221
Score = 92 (37.4 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 48 (22.0 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRS 215
+RS SPR RR++ S S R +SRS
Sbjct: 117 RRSRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
>TAIR|locus:2047092 [details] [associations]
symbol:GRP2B "glycine-rich protein 2B" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0009409 "response
to cold" evidence=IEP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009790 "embryo
development" evidence=IMP] [GO:0010154 "fruit development"
evidence=IMP] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005829 GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0005730 GO:GO:0006355 GO:GO:0046872 GO:GO:0003677
GO:GO:0009409 GO:GO:0008270 GO:GO:0003723 GO:GO:0009790
GO:GO:0010154 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
Gene3D:4.10.60.10 SUPFAM:SSF57756 HOGENOM:HOG000186262
InterPro:IPR019844 EMBL:AC006264 eggNOG:COG1278
ProtClustDB:CLSN2683565 EMBL:U39072 EMBL:AY057693 EMBL:BT021142
IPI:IPI00516457 PIR:F84596 RefSeq:NP_179702.1 UniGene:At.1680
ProteinModelPortal:Q38896 SMR:Q38896 PaxDb:Q38896 PRIDE:Q38896
EnsemblPlants:AT2G21060.1 GeneID:816641 KEGG:ath:AT2G21060
TAIR:At2g21060 InParanoid:Q38896 OMA:CFKCGEP PhylomeDB:Q38896
Genevestigator:Q38896 GermOnline:AT2G21060 Uniprot:Q38896
Length = 201
Score = 80 (33.2 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 53 GRGPPPGSGRCFNCGIDGHWARDCKAG 79
GRG G CF CG GH AR+C G
Sbjct: 128 GRGGGGGDNSCFKCGEPGHMARECSQG 154
Score = 62 (26.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 85 CYRCGERGHIERNC 98
CY CGE GH R+C
Sbjct: 182 CYSCGESGHFARDC 195
>MGI|MGI:1343044 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X chromosome"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005681 "spliceosomal complex"
evidence=ISO] [GO:0005719 "nuclear euchromatin" evidence=ISO]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006509 "membrane protein ectodomain proteolysis" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0044530
"supraspliceosomal complex" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] [GO:0070062 "extracellular
vesicular exosome" evidence=ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:0071347 "cellular response to
interleukin-1" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1343044
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724
EMBL:CH466583 HSSP:Q61474 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 ChiTaRS:RBMX EMBL:AJ237846
EMBL:AJ237847 EMBL:AK087940 EMBL:AK135164 EMBL:AK165006
EMBL:AL672106 EMBL:BC003710 IPI:IPI00124979 RefSeq:NP_001160095.1
RefSeq:NP_035382.1 UniGene:Mm.28275 ProteinModelPortal:Q9WV02
SMR:Q9WV02 IntAct:Q9WV02 STRING:Q9WV02 PhosphoSite:Q9WV02
PRIDE:Q9WV02 Ensembl:ENSMUST00000114726 Ensembl:ENSMUST00000114730
Ensembl:ENSMUST00000140384 GeneID:19655 KEGG:mmu:19655
UCSC:uc009thi.2 InParanoid:Q9R0Y0 NextBio:296930 Bgee:Q9WV02
Genevestigator:Q9WV02 Uniprot:Q9WV02
Length = 391
Score = 93 (37.8 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 25/58 (43%), Positives = 28/58 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 60
R FAFV F P DA DA +NG+ +DG I VE A R G PPP S
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFES--GRR--GLPPPPRS 102
Score = 53 (23.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSREYPSSRDTRDYAPPPRDYTYR 244
Score = 43 (20.2 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 12/30 (40%), Positives = 14/30 (46%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
P+D S S R + G S S RG RS
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGGRS 389
Score = 41 (19.5 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 17/58 (29%), Positives = 27/58 (46%)
Query: 54 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ +RD + ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYSSS-RSDLYSSG-RDRVGRQERGLPPSM 353
>UNIPROTKB|P24736 [details] [associations]
symbol:gag "Gag polyprotein" species:11703 "Human
immunodeficiency virus type 1 (STRAIN UGANDAN / ISOLATE U455)"
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0046788 GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
EMBL:M62320 PDB:1NCP PDBsum:1NCP ProteinModelPortal:P24736
SMR:P24736 EvolutionaryTrace:P24736 Uniprot:P24736
Length = 493
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C++CG+ GH ++C
Sbjct: 385 KCFNCGKEGHLAKNCRAPR-KKGCWKCGKEGHQMKDC 420
>UNIPROTKB|P05890 [details] [associations]
symbol:gag "Gag polyprotein" species:11701 "Human
immunodeficiency virus type 1 (RF/HAT ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M17451 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P05890 SMR:P05890 Uniprot:P05890
Length = 501
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104
+CFNCG GH A++C+A K C++CG+ GH ++C N ++
Sbjct: 391 KCFNCGKVGHIAKNCRAPR-KKGCWKCGKEGHQMKDCTNEGRQ 432
>RGD|1306751 [details] [associations]
symbol:Rbmxrtl "RNA binding motif protein, X chromosome
retrogene-like" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IDA]
[GO:0001047 "core promoter binding" evidence=ISO] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0005719 "nuclear euchromatin" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=IDA] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0007275 "multicellular organismal development"
evidence=IEA] [GO:0044530 "supraspliceosomal complex" evidence=IDA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO;ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IDA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0051260 "protein homooligomerization"
evidence=IDA] [GO:0070062 "extracellular vesicular exosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0071347 "cellular response to interleukin-1"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1306751 GO:GO:0007275
GO:GO:0000166 GO:GO:0070062 GO:GO:0051260 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0045944 GO:GO:0006366 GO:GO:0006509
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0006376 GO:GO:0000381
GO:GO:0044530 GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081 KO:K12885
OMA:ILLMKDR OrthoDB:EOG4001KF UniGene:Rn.19966 EMBL:AABR03113401
IPI:IPI00559910 RefSeq:NP_001100890.1 ProteinModelPortal:P84586
SMR:P84586 STRING:P84586 PhosphoSite:P84586 PRIDE:P84586
Ensembl:ENSRNOT00000016184 GeneID:307779 KEGG:rno:307779
UCSC:RGD:1306751 CTD:307779 InParanoid:P84586 NextBio:657858
Genevestigator:P84586 GermOnline:ENSRNOG00000012138 Uniprot:P84586
Length = 388
Score = 94 (38.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 25/56 (44%), Positives = 28/56 (50%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA D +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 53 (23.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 205 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 241
>UNIPROTKB|P04590 [details] [associations]
symbol:gag "Gag polyprotein" species:11720 "Human
immunodeficiency virus type 2 (ISOLATE ROD)" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0019048 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0020002
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0042025 GO:GO:0019028
GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
EMBL:M15390 EMBL:X05291 PIR:A26262 PDB:2WLV PDB:4DGB PDBsum:2WLV
PDBsum:4DGB ProteinModelPortal:P04590 SMR:P04590 IntAct:P04590
EvolutionaryTrace:P04590 Uniprot:P04590
Length = 522
Score = 111 (44.1 bits), Expect = 0.00031, P = 0.00031
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+C+NCG +GH AR C+A + C++CG+ GHI NC
Sbjct: 390 KCWNCGKEGHSARQCRAPR-RQGCWKCGKPGHIMTNC 425
>TAIR|locus:2827810 [details] [associations]
symbol:CSP3 "cold shock domain protein 3" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA;ISS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0009409 "response to cold"
evidence=IEP;IMP] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0009631
"cold acclimation" evidence=IMP] [GO:0032508 "DNA duplex unwinding"
evidence=IDA] InterPro:IPR001878 InterPro:IPR002059
InterPro:IPR011129 Pfam:PF00098 Pfam:PF00313 PRINTS:PR00050
PROSITE:PS50158 SMART:SM00343 SMART:SM00357 Prosite:PS00352
GO:GO:0005634 GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR
GO:GO:0006355 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0009631 GO:GO:0003723 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 Gene3D:4.10.60.10 SUPFAM:SSF57756
HOGENOM:HOG000186262 KO:K09250 InterPro:IPR019844 eggNOG:COG1278
ProtClustDB:CLSN2685328 GO:GO:0032508 HSSP:O54310 EMBL:AB308041
EMBL:AY035133 EMBL:AY062985 IPI:IPI00519047 PIR:T00837
RefSeq:NP_565427.1 UniGene:At.19464 ProteinModelPortal:Q94C69
SMR:Q94C69 PaxDb:Q94C69 PRIDE:Q94C69 EnsemblPlants:AT2G17870.1
GeneID:816297 KEGG:ath:AT2G17870 TAIR:At2g17870 InParanoid:Q94C69
OMA:MEDQSAA PhylomeDB:Q94C69 Genevestigator:Q94C69 Uniprot:Q94C69
Length = 301
Score = 108 (43.1 bits), Expect = 0.00032, P = 0.00032
Identities = 22/49 (44%), Positives = 25/49 (51%)
Query: 59 GSGR-CFNCGIDGHWARDCK--------AGDWKNKCYRCGERGHIERNC 98
G GR C+ CG GH ARDC G NKC+ CG+ GH R C
Sbjct: 249 GGGRACYECGGTGHLARDCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
>UNIPROTKB|E2RDB2 [details] [associations]
symbol:SRSF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676
GeneTree:ENSGT00700000104403 KO:K12891 OMA:DHRRRTR
EMBL:AAEX03006277 RefSeq:XP_003639286.1 RefSeq:XP_003639287.1
ProteinModelPortal:E2RDB2 Ensembl:ENSCAFT00000008286
GeneID:100856058 KEGG:cfa:100856058 NextBio:20898320 Uniprot:E2RDB2
Length = 221
Score = 92 (37.4 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F D RDA+DA +++G +DG + V+ A + RGPPP
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDS---HHSRRGPPP 107
Score = 47 (21.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRS 215
RSP+ +R R R ++ S R KSRS
Sbjct: 120 RSPRRRRRSRSRSRSRSRSRSRSRYSRSKSRS 151
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 189 QRSPSPRDRRQANGSEYSGSPRGKSRS 215
+R+ SPR RR++ S S R +SRS
Sbjct: 117 RRTRSPRRRRRSRSRSRSRS-RSRSRS 142
Score = 45 (20.9 bits), Expect = 0.00052, Sum P(2) = 0.00052
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDD 219
RS RSP P +R++ S SP +SP ++
Sbjct: 184 RSRSRSRSPPPVSKRESKSRSRSKSP---PKSPEEE 216
>UNIPROTKB|F1RF07 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010923 "negative regulation of phosphatase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001878
Pfam:PF00098 PROSITE:PS50158 SMART:SM00343 GO:GO:0046872
GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0010923 CTD:84240 OMA:DSQEVRE GeneTree:ENSGT00510000047308
EMBL:CU928538 RefSeq:NP_001231149.1 UniGene:Ssc.1803
Ensembl:ENSSSCT00000015433 GeneID:100514154 KEGG:ssc:100514154
Uniprot:F1RF07
Length = 270
Score = 107 (42.7 bits), Expect = 0.00034, P = 0.00034
Identities = 22/54 (40%), Positives = 31/54 (57%)
Query: 59 GSGRCFNCGIDGHWARDCKA------GDWK-NKCYRCGERGHIERNCQNSPKKL 105
G+G C+ CG H CKA G++ KC+ CGE GH+ R+C ++PK L
Sbjct: 152 GTGICYRCGSTEHEIIKCKAQVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGL 205
>ZFIN|ZDB-GENE-030131-579 [details] [associations]
symbol:rbmx "RNA binding motif protein, X-linked"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISS] [GO:0044530 "supraspliceosomal complex" evidence=ISS]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=ISS] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0051260 "protein homooligomerization"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0071347 "cellular response to interleukin-1" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-579
GO:GO:0007275 GO:GO:0008380 GO:GO:0000166 GO:GO:0070062
GO:GO:0051260 GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HSSP:Q14103 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 EMBL:AJ717349 EMBL:AY394938 EMBL:AL929434
EMBL:BC049509 EMBL:BC071326 IPI:IPI00509177 RefSeq:NP_997763.1
UniGene:Dr.76840 ProteinModelPortal:Q7ZWA3 SMR:Q7ZWA3 STRING:Q7ZWA3
PRIDE:Q7ZWA3 Ensembl:ENSDART00000007927 Ensembl:ENSDART00000131024
GeneID:321860 KEGG:dre:321860 CTD:27316 InParanoid:Q6TLG7 KO:K12885
OMA:PFFKGMS OrthoDB:EOG4CNQSK NextBio:20807559 ArrayExpress:Q7ZWA3
Bgee:Q7ZWA3 Uniprot:Q7ZWA3
Length = 379
Score = 97 (39.2 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 26/68 (38%), Positives = 33/68 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV + +P DA DA +NG+ +DG I VE A R GPPP R
Sbjct: 49 RGFAFVTYENPGDAKDAAREMNGKPLDGKPIKVEQATKPQFETSGRR-----GPPPPRSR 103
Query: 63 CFNCGIDG 70
+ G+ G
Sbjct: 104 GPSRGLRG 111
Score = 48 (22.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 183 ERSPQDQRSPSPRDRRQANGSEYSGSPRGKSR 214
+R + +R P P +R EYS S RG R
Sbjct: 332 DRPGRQERGPPPLERGYPR--EYSSSSRGAPR 361
>UNIPROTKB|P12493 [details] [associations]
symbol:gag "Gag polyprotein" species:11698 "Human
immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0019221 "cytokine-mediated signaling pathway"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 Reactome:REACT_6900 GO:GO:0005654
GO:GO:0030430 GO:GO:0046872 GO:GO:0005198 GO:GO:0008270
GO:GO:0019221 GO:GO:0003723 GO:GO:0010008 GO:GO:0020002
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0042025 GO:GO:0019028 EMBL:M19921 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PDB:2C55 PDBsum:2C55
DisProt:DP00101 ProteinModelPortal:P12493 SMR:P12493
EvolutionaryTrace:P12493 Uniprot:P12493
Length = 500
Score = 110 (43.8 bits), Expect = 0.00039, P = 0.00039
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHIAKNCRAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|P35962 [details] [associations]
symbol:gag "Gag polyprotein" species:362651 "Human
immunodeficiency virus type 1 (isolate YU2)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M93258 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705 PIR:A44001 PDB:1F6U
PDB:1MFS PDB:2R05 PDBsum:1F6U PDBsum:1MFS PDBsum:2R05
ProteinModelPortal:P35962 SMR:P35962 EvolutionaryTrace:P35962
Uniprot:P35962
Length = 500
Score = 110 (43.8 bits), Expect = 0.00039, P = 0.00039
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHIAKNCRAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|Q72497 [details] [associations]
symbol:gag "Gag polyprotein" species:11676 "Human
immunodeficiency virus 1" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0030430 GO:GO:0046872 GO:GO:0005198 GO:GO:0008270
GO:GO:0003723 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0042025
GO:GO:0019028 GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
InterPro:IPR014817 Pfam:PF08705 PDB:1M9D PDBsum:1M9D PDB:1M9C
PDB:1M9E PDB:1M9F PDB:1M9X PDB:1M9Y PDBsum:1M9C PDBsum:1M9E
PDBsum:1M9F PDBsum:1M9X PDBsum:1M9Y PDB:3OBU PDB:3OBX PDBsum:3OBU
PDBsum:3OBX EMBL:U26942 PDB:1L6N PDB:2BUO PDB:2JMG PDB:2NV3
PDBsum:1L6N PDBsum:2BUO PDBsum:2JMG PDBsum:2NV3
ProteinModelPortal:Q72497 SMR:Q72497 DIP:DIP-36777N IntAct:Q72497
EvolutionaryTrace:Q72497 Uniprot:Q72497
Length = 500
Score = 110 (43.8 bits), Expect = 0.00039, P = 0.00039
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHIAKNCRAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|P05888 [details] [associations]
symbol:gag "Gag polyprotein" species:11696 "HIV-1 M:B_MN"
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0010008 "endosome membrane" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] [GO:0046788 "egress of virus within host cell"
evidence=TAS] InterPro:IPR000071 InterPro:IPR000721
InterPro:IPR001878 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010999 InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540
Pfam:PF00607 PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343
GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430
GO:GO:0046872 GO:GO:0005198 GO:GO:0008270 GO:GO:0003723
GO:GO:0010008 GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025 GO:GO:0019028
EMBL:M17449 GO:GO:0019076 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0046788 GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
PIR:A38068 PDB:1AAF PDBsum:1AAF ProteinModelPortal:P05888
SMR:P05888 MINT:MINT-7014121 BindingDB:P05888
EvolutionaryTrace:P05888 Uniprot:P05888
Length = 507
Score = 110 (43.8 bits), Expect = 0.00040, P = 0.00040
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C++CG+ GH ++C
Sbjct: 394 KCFNCGKEGHIAKNCRAPR-KRGCWKCGKEGHQMKDC 429
>RGD|1565256 [details] [associations]
symbol:Rbmx "RNA binding motif protein, X-linked" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0001047 "core promoter binding"
evidence=ISO] [GO:0003682 "chromatin binding" evidence=ISO]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005681 "spliceosomal
complex" evidence=IDA] [GO:0005719 "nuclear euchromatin"
evidence=ISO] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0006509 "membrane protein ectodomain proteolysis"
evidence=ISO] [GO:0044530 "supraspliceosomal complex" evidence=ISO]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0070062
"extracellular vesicular exosome" evidence=ISO] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] [GO:0071347 "cellular
response to interleukin-1" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565256 GO:GO:0045893 GO:GO:0000166 GO:GO:0003727
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0005681 eggNOG:COG0724
GO:GO:0006376 EMBL:CH474106 GeneTree:ENSGT00700000104336
HOGENOM:HOG000276235 HOVERGEN:HBG063314 InterPro:IPR012604
Pfam:PF08081 CTD:27316 KO:K12885 OMA:PFFKGMS OrthoDB:EOG4CNQSK
EMBL:BC097479 IPI:IPI00370207 RefSeq:NP_001020834.1
UniGene:Rn.229269 ProteinModelPortal:Q4V898 SMR:Q4V898
STRING:Q4V898 PhosphoSite:Q4V898 PRIDE:Q4V898
Ensembl:ENSRNOT00000001154 GeneID:302855 KEGG:rno:302855
InParanoid:Q4V898 NextBio:650249 Genevestigator:Q4V898
Uniprot:Q4V898
Length = 390
Score = 93 (37.8 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 25/58 (43%), Positives = 28/58 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGS 60
R FAFV F P DA DA +NG+ +DG I VE A R G PPP S
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQATKPSFES--GRR--GLPPPPRS 102
Score = 53 (23.7 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 208 SPRDDGYSTKDSYSSRDYPSSRDTRDYAPPPRDYTYR 244
Score = 40 (19.1 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 54 RGPPP---GSGRC--FNCGIDGHW-ARDCKAGDWKNKCYRCGERGHIERNCQNSPKKL 105
RGPPP GS R ++ DG+ +RD ++ Y G R + R + P +
Sbjct: 298 RGPPPSYGGSSRYDDYSSSRDGYGGSRDSYTSS-RSDLYSSG-RDRVGRQERGLPPSM 353
Score = 38 (18.4 bits), Expect = 0.00099, Sum P(3) = 0.00099
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 186 PQDQRSPSPRDRRQANGSEYSGSPRG-KSR 214
P+D S S R + G S S RG +SR
Sbjct: 360 PRDSYSSSSRGAPRGGGRGGSRSDRGGRSR 389
>UNIPROTKB|G4MSA5 [details] [associations]
symbol:MGG_04482 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CM001231 RefSeq:XP_003710975.1 ProteinModelPortal:G4MSA5
EnsemblFungi:MGG_04482T0 GeneID:2678032 KEGG:mgr:MGG_04482
Uniprot:G4MSA5
Length = 206
Score = 69 (29.3 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 15/37 (40%), Positives = 25/37 (67%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRII-VEFA 38
R FAFVE+ D RDAD+A + ++ + + I+ +E+A
Sbjct: 46 RLFAFVEYEDRRDADEAYHDMHNKRLGRDDILKIEWA 82
Score = 65 (27.9 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 19/49 (38%), Positives = 24/49 (48%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY-RSP 231
RSP+ RSPSP RR + + R + R D D DR+ RSP
Sbjct: 110 RSPRRGRSPSPPRRRDYSPRKDDRRDRDRDRDRDYDRDSRRDRDRSRSP 158
Score = 37 (18.1 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 72 WARDCKAGDWKNKCYRCGERGHIERN-CQNSPKK 104
WAR + W+ + R +RG + + SP++
Sbjct: 81 WARTPPSASWRFESGRDRDRGSDRGDRSRRSPRR 114
>UNIPROTKB|P04585 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11706 "HIV-1
M:B_HXB2R" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0019061 "uncoating of virus" evidence=TAS] [GO:0030260 "entry
into host cell" evidence=TAS] [GO:0042802 "identical protein
binding" evidence=IPI] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:K03455 EMBL:AF033819 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 PDB:1NCP PDBsum:1NCP
GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PDB:1RTD PDB:1T05
PDB:2HNZ PDBsum:1RTD PDBsum:1T05 PDBsum:2HNZ RefSeq:NP_057849.4
PDB:1A30 PDB:1BV7 PDB:1BV9 PDB:1BVE PDB:1BVG PDB:1BWA PDB:1BWB
PDB:1C0T PDB:1C0U PDB:1C1B PDB:1C1C PDB:1DMP PDB:1DTQ PDB:1DTT
PDB:1E6J PDB:1EP4 PDB:1ESK PDB:1EX4 PDB:1EXQ PDB:1FB7 PDB:1FK9
PDB:1FKO PDB:1FKP PDB:1G6L PDB:1HIV PDB:1HVH PDB:1HVR PDB:1HWR
PDB:1HXB PDB:1JKH PDB:1JLA PDB:1JLB PDB:1JLC PDB:1JLE PDB:1JLF
PDB:1JLG PDB:1JLQ PDB:1KLM PDB:1LV1 PDB:1LW0 PDB:1LW2 PDB:1LWC
PDB:1LWE PDB:1LWF PDB:1O1W PDB:1ODW PDB:1ODY PDB:1QBR PDB:1QBS
PDB:1QBT PDB:1QBU PDB:1REV PDB:1RT1 PDB:1RT2 PDB:1RT3 PDB:1RT4
PDB:1RT5 PDB:1RT6 PDB:1RT7 PDB:1RTH PDB:1RTI PDB:1RTJ PDB:1S1T
PDB:1S1U PDB:1S1V PDB:1S1W PDB:1S1X PDB:1TAM PDB:1TKT PDB:1TKX
PDB:1TKZ PDB:1TL1 PDB:1TL3 PDB:1VRT PDB:1VRU PDB:2HND PDB:2HNY
PDB:2KOD PDB:2NPH PDB:2OPP PDB:2OPQ PDB:2OPR PDB:2OPS PDB:2RF2
PDB:2RKI PDB:2WHH PDB:2WOM PDB:2WON PDB:2YNF PDB:2YNG PDB:2YNH
PDB:2YNI PDB:3AO2 PDB:3C6T PDB:3C6U PDB:3DI6 PDB:3DLE PDB:3DLG
PDB:3DM2 PDB:3DMJ PDB:3DOK PDB:3DOL PDB:3DOX PDB:3DRP PDB:3DRR
PDB:3DRS PDB:3DYA PDB:3E01 PDB:3FFI PDB:3I0R PDB:3I0S PDB:3KJV
PDB:3KK1 PDB:3KK2 PDB:3KK3 PDB:3KT2 PDB:3KT5 PDB:3LAK PDB:3LAL
PDB:3LAM PDB:3LAN PDB:3LP0 PDB:3LP1 PDB:3LP2 PDB:3M8P PDB:3M8Q
PDB:3MEC PDB:3MED PDB:3MEE PDB:3MEG PDB:3MIM PDB:3N3I PDB:3NBP
PDB:3PHV PDB:3QIN PDB:3QIO PDB:3QIP PDB:3T19 PDB:3T1A PDB:3TAM
PDB:4B3O PDB:4B3P PDB:4B3Q PDBsum:1A30 PDBsum:1BV7 PDBsum:1BV9
PDBsum:1BVE PDBsum:1BVG PDBsum:1BWA PDBsum:1BWB PDBsum:1C0T
PDBsum:1C0U PDBsum:1C1B PDBsum:1C1C PDBsum:1DMP PDBsum:1DTQ
PDBsum:1DTT PDBsum:1E6J PDBsum:1EP4 PDBsum:1ESK PDBsum:1EX4
PDBsum:1EXQ PDBsum:1FB7 PDBsum:1FK9 PDBsum:1FKO PDBsum:1FKP
PDBsum:1G6L PDBsum:1HIV PDBsum:1HVH PDBsum:1HVR PDBsum:1HWR
PDBsum:1HXB PDBsum:1JKH PDBsum:1JLA PDBsum:1JLB PDBsum:1JLC
PDBsum:1JLE PDBsum:1JLF PDBsum:1JLG PDBsum:1JLQ PDBsum:1KLM
PDBsum:1LV1 PDBsum:1LW0 PDBsum:1LW2 PDBsum:1LWC PDBsum:1LWE
PDBsum:1LWF PDBsum:1O1W PDBsum:1ODW PDBsum:1ODY PDBsum:1QBR
PDBsum:1QBS PDBsum:1QBT PDBsum:1QBU PDBsum:1REV PDBsum:1RT1
PDBsum:1RT2 PDBsum:1RT3 PDBsum:1RT4 PDBsum:1RT5 PDBsum:1RT6
PDBsum:1RT7 PDBsum:1RTH PDBsum:1RTI PDBsum:1RTJ PDBsum:1S1T
PDBsum:1S1U PDBsum:1S1V PDBsum:1S1W PDBsum:1S1X PDBsum:1TAM
PDBsum:1TKT PDBsum:1TKX PDBsum:1TKZ PDBsum:1TL1 PDBsum:1TL3
PDBsum:1VRT PDBsum:1VRU PDBsum:2HND PDBsum:2HNY PDBsum:2KOD
PDBsum:2NPH PDBsum:2OPP PDBsum:2OPQ PDBsum:2OPR PDBsum:2OPS
PDBsum:2RF2 PDBsum:2RKI PDBsum:2WHH PDBsum:2WOM PDBsum:2WON
PDBsum:2YNF PDBsum:2YNG PDBsum:2YNH PDBsum:2YNI PDBsum:3AO2
PDBsum:3C6T PDBsum:3C6U PDBsum:3DI6 PDBsum:3DLE PDBsum:3DLG
PDBsum:3DM2 PDBsum:3DMJ PDBsum:3DOK PDBsum:3DOL PDBsum:3DOX
PDBsum:3DRP PDBsum:3DRR PDBsum:3DRS PDBsum:3DYA PDBsum:3E01
PDBsum:3FFI PDBsum:3I0R PDBsum:3I0S PDBsum:3KJV PDBsum:3KK1
PDBsum:3KK2 PDBsum:3KK3 PDBsum:3KT2 PDBsum:3KT5 PDBsum:3LAK
PDBsum:3LAL PDBsum:3LAM PDBsum:3LAN PDBsum:3LP0 PDBsum:3LP1
PDBsum:3LP2 PDBsum:3M8P PDBsum:3M8Q PDBsum:3MEC PDBsum:3MED
PDBsum:3MEE PDBsum:3MEG PDBsum:3MIM PDBsum:3N3I PDBsum:3NBP
PDBsum:3PHV PDBsum:3QIN PDBsum:3QIO PDBsum:3QIP PDBsum:3T19
PDBsum:3T1A PDBsum:3TAM PDBsum:4B3O PDBsum:4B3P PDBsum:4B3Q
ProteinModelPortal:P04585 SMR:P04585 MINT:MINT-111862
SABIO-RK:P04585 EvolutionaryTrace:P04585 Uniprot:P04585
Length = 1435
Score = 114 (45.2 bits), Expect = 0.00042, P = 0.00042
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHTARNCRAPR-KKGCWKCGKEGHQMKDC 426
>UNIPROTKB|P04588 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11697 "Human
immunodeficiency virus type 1 (MAL ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 PDB:1HHJ PDBsum:1HHJ GO:GO:0016020
GO:GO:0046872 GO:GO:0003677 GO:GO:0005198 GO:GO:0008270
GO:GO:0006508 GO:GO:0003723 GO:GO:0046718 GO:GO:0020002
GO:GO:0006310 GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 GO:GO:0019028 EMBL:X04415 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 GO:GO:0075732
Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10 PIR:T01668 PDB:3IXO
PDBsum:3IXO ProteinModelPortal:P04588 SMR:P04588
EvolutionaryTrace:P04588 Uniprot:P04588
Length = 1440
Score = 114 (45.2 bits), Expect = 0.00043, P = 0.00043
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 397 KCFNCGKEGHLARNCRAPR-KKGCWKCGKEGHQMKDC 432
>UNIPROTKB|D6RAT4 [details] [associations]
symbol:CNBP "Cellular nucleic acid-binding protein"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 EMBL:AC108673 EMBL:AC135587 HGNC:HGNC:13164
ChiTaRS:CNBP IPI:IPI00965541 ProteinModelPortal:D6RAT4 SMR:D6RAT4
Ensembl:ENST00000512338 ArrayExpress:D6RAT4 Bgee:D6RAT4
Uniprot:D6RAT4
Length = 114
Score = 89 (36.4 bits), Expect = 0.00043, P = 0.00043
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 60 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGERG 92
S CF CG GHWAR+C G + + R RG
Sbjct: 3 SNECFKCGRSGHWARECPTGGGRGRGMRSRGRG 35
>UNIPROTKB|P03366 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11678 "Human
immunodeficiency virus type 1 BH10" [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0006278
"RNA-dependent DNA replication" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000477 InterPro:IPR000721
InterPro:IPR001037 InterPro:IPR001584 InterPro:IPR001878
InterPro:IPR001969 InterPro:IPR001995 InterPro:IPR002156
InterPro:IPR003308 InterPro:IPR008916 InterPro:IPR008919
InterPro:IPR010659 InterPro:IPR010661 InterPro:IPR010999
InterPro:IPR012337 InterPro:IPR012344 Pfam:PF00075 Pfam:PF00078
Pfam:PF00098 Pfam:PF00540 Pfam:PF00552 Pfam:PF00607 Pfam:PF00665
Pfam:PF02022 Pfam:PF06815 Pfam:PF06817 PRINTS:PR00234
PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175 PROSITE:PS50876
PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994 PROSITE:PS51027
SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125 GO:GO:0005654
GO:GO:0030430 PDB:2X4U PDBsum:2X4U GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 DrugBank:DB01093 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 DrugBank:DB01264 DrugBank:DB01601 GO:GO:0019028
EMBL:M15654 EMBL:K02083 EMBL:X01762 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 GO:GO:0075732
Gene3D:1.10.10.200 InterPro:IPR017856 SUPFAM:SSF50122
SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077 PDB:1KJH
PDBsum:1KJH GO:GO:0004533 GO:GO:0039651 GO:GO:0046797
Gene3D:2.30.30.10 PIR:A03965 PIR:A03967 PDB:1A9M PDB:1AJV PDB:1AJX
PDB:1AXA PDB:1BQM PDB:1BQN PDB:1D4H PDB:1D4I PDB:1D4J PDB:1DLO
PDB:1DW6 PDB:1EBK PDB:1EBW PDB:1EBY PDB:1EBZ PDB:1EC0 PDB:1EC1
PDB:1EC2 PDB:1EC3 PDB:1EET PDB:1G35 PDB:1GNM PDB:1GNN PDB:1GNO
PDB:1HAR PDB:1HBV PDB:1HEF PDB:1HEG PDB:1HIH PDB:1HMV PDB:1HNI
PDB:1HNV PDB:1HOS PDB:1HPS PDB:1HPZ PDB:1HQE PDB:1HQU PDB:1HRH
PDB:1HTE PDB:1HTF PDB:1HTG PDB:1HVI PDB:1HVK PDB:1HVP PDB:1HVU
PDB:1HYS PDB:1IKV PDB:1IKW PDB:1IKX PDB:1IKY PDB:1J5O PDB:1MER
PDB:1MES PDB:1MET PDB:1MEU PDB:1N5Y PDB:1N6Q PDB:1NPA PDB:1NPV
PDB:1NPW PDB:1QE1 PDB:1QMC PDB:1R0A PDB:1RDH PDB:1RTD PDB:1RVL
PDB:1RVM PDB:1RVN PDB:1RVO PDB:1RVP PDB:1RVQ PDB:1RVR PDB:1S6P
PDB:1S6Q PDB:1S9E PDB:1S9G PDB:1SBG PDB:1SUQ PDB:1SV5 PDB:1T03
PDB:1T05 PDB:1T7K PDB:1TV6 PDB:1TVR PDB:1UWB PDB:1W5V PDB:1W5W
PDB:1W5X PDB:1W5Y PDB:1YT9 PDB:1ZP8 PDB:1ZPA PDB:1ZSF PDB:1ZSR
PDB:2AQU PDB:2B5J PDB:2B6A PDB:2BAN PDB:2BBB PDB:2BE2 PDB:2EXF
PDB:2G69 PDB:2HB3 PDB:2HMI PDB:2HNZ PDB:2HS1 PDB:2HS2 PDB:2I4D
PDB:2I4U PDB:2I4V PDB:2I4W PDB:2I4X PDB:2I5J PDB:2IAJ PDB:2IC3
PDB:2IDW PDB:2IEO PDB:2L45 PDB:2L46 PDB:2L4L PDB:2UXZ PDB:2UY0
PDB:2VG5 PDB:2VG6 PDB:2VG7 PDB:2YKM PDB:2YKN PDB:2ZD1 PDB:2ZE2
PDB:3AVI PDB:3BGR PDB:3DLK PDB:3GGA PDB:3GGV PDB:3GGX PDB:3HVT
PDB:3IG1 PDB:3IRX PDB:3IS9 PDB:3ISN PDB:3ITH PDB:3JSM PDB:3JYT
PDB:3K2P PDB:3K4V PDB:3KLE PDB:3KLF PDB:3KLG PDB:3KLH PDB:3KLI
PDB:3NDT PDB:3NU3 PDB:3NU4 PDB:3NU5 PDB:3NU6 PDB:3NU9 PDB:3NUJ
PDB:3NUO PDB:3OK9 PDB:3PSU PDB:3QAA PDB:3QLH PDB:3QO9 PDB:3TKG
PDB:3TKW PDB:3TL9 PDB:3TLH PDB:3V4I PDB:3V6D PDB:3V81 PDB:4DG1
PDB:4H4M PDB:4H4O PDB:4I2P PDB:4I2Q PDBsum:1A9M PDBsum:1AJV
PDBsum:1AJX PDBsum:1AXA PDBsum:1BQM PDBsum:1BQN PDBsum:1D4H
PDBsum:1D4I PDBsum:1D4J PDBsum:1DLO PDBsum:1DW6 PDBsum:1EBK
PDBsum:1EBW PDBsum:1EBY PDBsum:1EBZ PDBsum:1EC0 PDBsum:1EC1
PDBsum:1EC2 PDBsum:1EC3 PDBsum:1EET PDBsum:1G35 PDBsum:1GNM
PDBsum:1GNN PDBsum:1GNO PDBsum:1HAR PDBsum:1HBV PDBsum:1HEF
PDBsum:1HEG PDBsum:1HIH PDBsum:1HMV PDBsum:1HNI PDBsum:1HNV
PDBsum:1HOS PDBsum:1HPS PDBsum:1HPZ PDBsum:1HQE PDBsum:1HQU
PDBsum:1HRH PDBsum:1HTE PDBsum:1HTF PDBsum:1HTG PDBsum:1HVI
PDBsum:1HVK PDBsum:1HVP PDBsum:1HVU PDBsum:1HYS PDBsum:1IKV
PDBsum:1IKW PDBsum:1IKX PDBsum:1IKY PDBsum:1J5O PDBsum:1MER
PDBsum:1MES PDBsum:1MET PDBsum:1MEU PDBsum:1N5Y PDBsum:1N6Q
PDBsum:1NPA PDBsum:1NPV PDBsum:1NPW PDBsum:1QE1 PDBsum:1QMC
PDBsum:1R0A PDBsum:1RDH PDBsum:1RTD PDBsum:1RVL PDBsum:1RVM
PDBsum:1RVN PDBsum:1RVO PDBsum:1RVP PDBsum:1RVQ PDBsum:1RVR
PDBsum:1S6P PDBsum:1S6Q PDBsum:1S9E PDBsum:1S9G PDBsum:1SBG
PDBsum:1SUQ PDBsum:1SV5 PDBsum:1T03 PDBsum:1T05 PDBsum:1T7K
PDBsum:1TV6 PDBsum:1TVR PDBsum:1UWB PDBsum:1W5V PDBsum:1W5W
PDBsum:1W5X PDBsum:1W5Y PDBsum:1YT9 PDBsum:1ZP8 PDBsum:1ZPA
PDBsum:1ZSF PDBsum:1ZSR PDBsum:2AQU PDBsum:2B5J PDBsum:2B6A
PDBsum:2BAN PDBsum:2BBB PDBsum:2BE2 PDBsum:2EXF PDBsum:2G69
PDBsum:2HB3 PDBsum:2HMI PDBsum:2HNZ PDBsum:2HS1 PDBsum:2HS2
PDBsum:2I4D PDBsum:2I4U PDBsum:2I4V PDBsum:2I4W PDBsum:2I4X
PDBsum:2I5J PDBsum:2IAJ PDBsum:2IC3 PDBsum:2IDW PDBsum:2IEO
PDBsum:2L45 PDBsum:2L46 PDBsum:2L4L PDBsum:2UXZ PDBsum:2UY0
PDBsum:2VG5 PDBsum:2VG6 PDBsum:2VG7 PDBsum:2YKM PDBsum:2YKN
PDBsum:2ZD1 PDBsum:2ZE2 PDBsum:3AVI PDBsum:3BGR PDBsum:3DLK
PDBsum:3GGA PDBsum:3GGV PDBsum:3GGX PDBsum:3HVT PDBsum:3IG1
PDBsum:3IRX PDBsum:3IS9 PDBsum:3ISN PDBsum:3ITH PDBsum:3JSM
PDBsum:3JYT PDBsum:3K2P PDBsum:3K4V PDBsum:3KLE PDBsum:3KLF
PDBsum:3KLG PDBsum:3KLH PDBsum:3KLI PDBsum:3NDT PDBsum:3NU3
PDBsum:3NU4 PDBsum:3NU5 PDBsum:3NU6 PDBsum:3NU9 PDBsum:3NUJ
PDBsum:3NUO PDBsum:3OK9 PDBsum:3PSU PDBsum:3QAA PDBsum:3QLH
PDBsum:3QO9 PDBsum:3TKG PDBsum:3TKW PDBsum:3TL9 PDBsum:3TLH
PDBsum:3V4I PDBsum:3V6D PDBsum:3V81 PDBsum:4DG1 PDBsum:4H4M
PDBsum:4H4O PDBsum:4I2P PDBsum:4I2Q ProteinModelPortal:P03366
SMR:P03366 IntAct:P03366 MINT:MINT-111903 SABIO-RK:P03366
ChEMBL:CHEMBL5823 EvolutionaryTrace:P03366 Uniprot:P03366
Length = 1447
Score = 114 (45.2 bits), Expect = 0.00043, P = 0.00043
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHTARNCRAPR-KKGCWKCGKEGHQMKDC 426
>RGD|1585845 [details] [associations]
symbol:Rbmxl1 "RNA binding motif protein, X-linked-like 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1585845 GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00700000104336 InterPro:IPR012604 Pfam:PF08081
OrthoDB:EOG4CNQSK EMBL:AC136101 IPI:IPI00763272 UniGene:Rn.19966
Ensembl:ENSRNOT00000041672 UCSC:RGD:1585845 Uniprot:D4AE41
Length = 388
Score = 94 (38.1 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 25/56 (44%), Positives = 28/56 (50%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPP 58
R FAFV F P DA D +NG+ +DG I VE A S E RGPPP
Sbjct: 49 RGFAFVTFESPADAKDVARDMNGKSLDGKAIKVEQATKP------SFESGRRGPPP 98
Score = 51 (23.0 bits), Expect = 0.00048, Sum P(2) = 0.00048
Identities = 14/37 (37%), Positives = 15/37 (40%)
Query: 193 SPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYR 229
SPRD + YS SR D A P D YR
Sbjct: 205 SPRDDGYSTKDSYSSRDYLSSRDTRDYAPPPRDYTYR 241
>UNIPROTKB|A4FUC6 [details] [associations]
symbol:SFRS9 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
eggNOG:COG0724 HOVERGEN:HBG002295 GeneTree:ENSGT00700000104103
HOGENOM:HOG000276234 KO:K12890 CTD:8683 OrthoDB:EOG4CC42K
EMBL:DAAA02045453 EMBL:BC114699 IPI:IPI00690315
RefSeq:NP_001076867.1 RefSeq:XP_003585083.1 UniGene:Bt.30434
SMR:A4FUC6 STRING:A4FUC6 Ensembl:ENSBTAT00000016997
GeneID:100851440 GeneID:509905 KEGG:bta:100851440 KEGG:bta:509905
InParanoid:A4FUC6 OMA:PPPRHYR NextBio:20869189 Uniprot:A4FUC6
Length = 221
Score = 104 (41.7 bits), Expect = 0.00054, P = 0.00054
Identities = 28/58 (48%), Positives = 30/58 (51%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFV F DPRDA+DA Y NG D R+ VEF R Y GRG P GR
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFP----------RTYGGRGGWPRGGR 101
>UNIPROTKB|E2RK20 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 KO:K12890 CTD:8683 OMA:DIREHEI
EMBL:AAEX03014735 RefSeq:XP_534706.1 ProteinModelPortal:E2RK20
Ensembl:ENSCAFT00000016374 GeneID:477510 KEGG:cfa:477510
NextBio:20852976 Uniprot:E2RK20
Length = 221
Score = 104 (41.7 bits), Expect = 0.00054, P = 0.00054
Identities = 27/66 (40%), Positives = 30/66 (45%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGRCF 64
FAFV F DPRDA+DA Y NG D R+ VEF R GR PP F
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFPRTYGSRGGWPRG--GRNGPPTRRSDF 111
Query: 65 NCGIDG 70
+ G
Sbjct: 112 RVLVSG 117
>UNIPROTKB|Q13242 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006376 "mRNA splice site selection"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006366 "transcription
from RNA polymerase II promoter" evidence=TAS] [GO:0006369
"termination of RNA polymerase II transcription" evidence=TAS]
[GO:0006406 "mRNA export from nucleus" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0031124 "mRNA 3'-end processing" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006406 Reactome:REACT_1788
GO:GO:0048025 eggNOG:COG0724 GO:GO:0006376 GO:GO:0006369
GO:GO:0031124 Reactome:REACT_78 EMBL:AL021546 HOVERGEN:HBG002295
UniGene:Hs.728777 KO:K12890 EMBL:U30825 EMBL:U87279 EMBL:U87277
EMBL:U87278 EMBL:BC093971 EMBL:BC093973 IPI:IPI00012340 PIR:S59075
RefSeq:NP_003760.1 UniGene:Hs.706889 ProteinModelPortal:Q13242
SMR:Q13242 DIP:DIP-40741N IntAct:Q13242 MINT:MINT-133565
STRING:Q13242 PhosphoSite:Q13242 DMDM:3929377 PaxDb:Q13242
PeptideAtlas:Q13242 PRIDE:Q13242 Ensembl:ENST00000229390
GeneID:8683 KEGG:hsa:8683 UCSC:uc001tyi.3 CTD:8683
GeneCards:GC12M120900 HGNC:HGNC:10791 HPA:HPA049849 MIM:601943
neXtProt:NX_Q13242 PharmGKB:PA35707 InParanoid:Q13242 OMA:DIREHEI
OrthoDB:EOG4CC42K PhylomeDB:Q13242 GenomeRNAi:8683 NextBio:32569
Bgee:Q13242 CleanEx:HS_SFRS9 Genevestigator:Q13242
GermOnline:ENSG00000111786 Uniprot:Q13242
Length = 221
Score = 104 (41.7 bits), Expect = 0.00054, P = 0.00054
Identities = 28/58 (48%), Positives = 30/58 (51%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFV F DPRDA+DA Y NG D R+ VEF R Y GRG P GR
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFP----------RTYGGRGGWPRGGR 101
>UNIPROTKB|F1RJJ0 [details] [associations]
symbol:SRSF9 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048025 "negative regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0048025
GeneTree:ENSGT00700000104103 OMA:DIREHEI EMBL:CU468509
ProteinModelPortal:F1RJJ0 Ensembl:ENSSSCT00000010856 Uniprot:F1RJJ0
Length = 221
Score = 104 (41.7 bits), Expect = 0.00054, P = 0.00054
Identities = 28/58 (48%), Positives = 30/58 (51%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
FAFV F DPRDA+DA Y NG D R+ VEF R Y GRG P GR
Sbjct: 54 FAFVRFEDPRDAEDAIYGRNGYDYGQCRLRVEFP----------RTYGGRGGWPRGGR 101
>UNIPROTKB|Q9DDU8 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 HSSP:Q9V535 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 OMA:YDDREYY
EMBL:AADN02024287 EMBL:AF282244 IPI:IPI00571265 RefSeq:NP_990009.1
UniGene:Gga.4158 SMR:Q9DDU8 Ensembl:ENSGALT00000010555
GeneID:395403 KEGG:gga:395403 InParanoid:Q9DDU8 NextBio:20815487
Uniprot:Q9DDU8
Length = 289
Score = 106 (42.4 bits), Expect = 0.00054, P = 0.00054
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV F + DA +A+ NG ++DG RI V+F+ Y+GR P GS R
Sbjct: 159 RGFAFVYFENVEDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSR 217
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERG 92
+ D + R D+ ++ YR G G
Sbjct: 218 RRDY-YDRGYDRGYDDRDYYSRSYRGGGGG 246
>UNIPROTKB|P20889 [details] [associations]
symbol:gag "Gag polyprotein" species:11699 "Human
immunodeficiency virus type 1 (OYI ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 GO:GO:0046872
GO:GO:0005198 GO:GO:0008270 GO:GO:0003723 GO:GO:0010008
GO:GO:0020002 GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756
GO:GO:0030260 GO:GO:0042025 GO:GO:0019028 EMBL:M26727 GO:GO:0019076
Gene3D:1.10.1200.30 Gene3D:1.10.150.90 Gene3D:1.10.375.10
SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788
GO:GO:0019061 InterPro:IPR014817 Pfam:PF08705
ProteinModelPortal:P20889 SMR:P20889 Uniprot:P20889
Length = 499
Score = 109 (43.4 bits), Expect = 0.00055, P = 0.00055
Identities = 17/37 (45%), Positives = 26/37 (70%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C++CG GH ++C
Sbjct: 390 KCFNCGKEGHIAKNCRAPR-KKGCWKCGREGHQMKDC 425
>UNIPROTKB|P18802 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11695 "Human
immunodeficiency virus type 1 (NDK ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M27323 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
PIR:JQ0067 PDB:1EQI PDBsum:1EQI ProteinModelPortal:P18802
SMR:P18802 Uniprot:P18802
Length = 1432
Score = 113 (44.8 bits), Expect = 0.00057, P = 0.00057
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 57 PPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
P S +CFNCG +GH A++C+A K C++CG GH ++C
Sbjct: 384 PRKSIKCFNCGKEGHTAKNCRAPR-KKGCWKCGREGHQMKDC 424
>UNIPROTKB|P03367 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11686 "Human
immunodeficiency virus type 1 (BRU ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:K02013 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
GO:GO:0004533 GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
PDB:1HNI PDBsum:1HNI PDB:1A8G PDB:1A8K PDB:1A94 PDB:1AAQ PDB:1D4S
PDB:1D4Y PDB:1DAZ PDB:1DIF PDB:1FQX PDB:1HHP PDB:1HPO PDB:1HPX
PDB:1HSG PDB:1HVL PDB:1IIQ PDB:1IZI PDB:1LZQ PDB:1M0B PDB:1MRW
PDB:1MRX PDB:1MSM PDB:1MSN PDB:1NH0 PDB:1RL8 PDB:1SDT PDB:1SDU
PDB:1SDV PDB:1SGU PDB:1SH9 PDB:1SP5 PDB:1U8G PDB:1UPJ PDB:1XL2
PDB:1XL5 PDB:1Z8C PDB:1ZBG PDB:1ZJ7 PDB:1ZLF PDB:1ZPK PDB:1ZTZ
PDB:2A1E PDB:2AZ8 PDB:2AZ9 PDB:2AZB PDB:2AZC PDB:2B7Z PDB:2BB9
PDB:2FDE PDB:2FND PDB:2HB2 PDB:2HB4 PDB:2HC0 PDB:2IEN PDB:2O4K
PDB:2O4L PDB:2O4N PDB:2O4P PDB:2O4S PDB:2P3B PDB:2PK5 PDB:2PK6
PDB:2PQZ PDB:2PWC PDB:2PWR PDB:2PYM PDB:2PYN PDB:2Q63 PDB:2Q64
PDB:2QAK PDB:2QCI PDB:2QD6 PDB:2QD7 PDB:2QD8 PDB:2QHC PDB:2QNN
PDB:2QNP PDB:2QNQ PDB:2R43 PDB:2UPJ PDB:2Z4O PDB:2ZGA PDB:2ZYE
PDB:3A2O PDB:3BHE PDB:3BVA PDB:3BVB PDB:3CKT PDB:3DJK PDB:3DK1
PDB:3FX5 PDB:3GGU PDB:3H5B PDB:3I6O PDB:3I8W PDB:3JVW PDB:3JVY
PDB:3JW2 PDB:3KDB PDB:3KDC PDB:3KDD PDB:3NDU PDB:3NDW PDB:3NDX
PDB:3NLS PDB:3PWM PDB:3PWR PDB:3QBF PDB:3QIH PDB:3QN8 PDB:3QOZ
PDB:3QP0 PDB:3QPJ PDB:3QRM PDB:3QRO PDB:3QRS PDB:3ST5 PDB:3T11
PDB:3T3C PDB:3TOF PDB:3TOG PDB:3TOH PDB:3TTP PDB:3U7S PDB:3UCB
PDB:3UF3 PDB:3UFN PDB:3UHL PDB:3VF5 PDB:3VF7 PDB:3VFB PDB:4DFG
PDB:4FAF PDB:4FE6 PDB:4FL8 PDB:4FLG PDB:4FM6 PDB:7UPJ PDBsum:1A8G
PDBsum:1A8K PDBsum:1A94 PDBsum:1AAQ PDBsum:1D4S PDBsum:1D4Y
PDBsum:1DAZ PDBsum:1DIF PDBsum:1FQX PDBsum:1HHP PDBsum:1HPO
PDBsum:1HPX PDBsum:1HSG PDBsum:1HVL PDBsum:1IIQ PDBsum:1IZI
PDBsum:1LZQ PDBsum:1M0B PDBsum:1MRW PDBsum:1MRX PDBsum:1MSM
PDBsum:1MSN PDBsum:1NH0 PDBsum:1RL8 PDBsum:1SDT PDBsum:1SDU
PDBsum:1SDV PDBsum:1SGU PDBsum:1SH9 PDBsum:1SP5 PDBsum:1U8G
PDBsum:1UPJ PDBsum:1XL2 PDBsum:1XL5 PDBsum:1Z8C PDBsum:1ZBG
PDBsum:1ZJ7 PDBsum:1ZLF PDBsum:1ZPK PDBsum:1ZTZ PDBsum:2A1E
PDBsum:2AZ8 PDBsum:2AZ9 PDBsum:2AZB PDBsum:2AZC PDBsum:2B7Z
PDBsum:2BB9 PDBsum:2FDE PDBsum:2FND PDBsum:2HB2 PDBsum:2HB4
PDBsum:2HC0 PDBsum:2IEN PDBsum:2O4K PDBsum:2O4L PDBsum:2O4N
PDBsum:2O4P PDBsum:2O4S PDBsum:2P3B PDBsum:2PK5 PDBsum:2PK6
PDBsum:2PQZ PDBsum:2PWC PDBsum:2PWR PDBsum:2PYM PDBsum:2PYN
PDBsum:2Q63 PDBsum:2Q64 PDBsum:2QAK PDBsum:2QCI PDBsum:2QD6
PDBsum:2QD7 PDBsum:2QD8 PDBsum:2QHC PDBsum:2QNN PDBsum:2QNP
PDBsum:2QNQ PDBsum:2R43 PDBsum:2UPJ PDBsum:2Z4O PDBsum:2ZGA
PDBsum:2ZYE PDBsum:3A2O PDBsum:3BHE PDBsum:3BVA PDBsum:3BVB
PDBsum:3CKT PDBsum:3DJK PDBsum:3DK1 PDBsum:3FX5 PDBsum:3GGU
PDBsum:3H5B PDBsum:3I6O PDBsum:3I8W PDBsum:3JVW PDBsum:3JVY
PDBsum:3JW2 PDBsum:3KDB PDBsum:3KDC PDBsum:3KDD PDBsum:3NDU
PDBsum:3NDW PDBsum:3NDX PDBsum:3NLS PDBsum:3PWM PDBsum:3PWR
PDBsum:3QBF PDBsum:3QIH PDBsum:3QN8 PDBsum:3QOZ PDBsum:3QP0
PDBsum:3QPJ PDBsum:3QRM PDBsum:3QRO PDBsum:3QRS PDBsum:3ST5
PDBsum:3T11 PDBsum:3T3C PDBsum:3TOF PDBsum:3TOG PDBsum:3TOH
PDBsum:3TTP PDBsum:3U7S PDBsum:3UCB PDBsum:3UF3 PDBsum:3UFN
PDBsum:3UHL PDBsum:3VF5 PDBsum:3VF7 PDBsum:3VFB PDBsum:4DFG
PDBsum:4FAF PDBsum:4FE6 PDBsum:4FL8 PDBsum:4FLG PDBsum:4FM6
PDBsum:7UPJ ProteinModelPortal:P03367 SMR:P03367
EvolutionaryTrace:P03367 Uniprot:P03367
Length = 1447
Score = 113 (44.8 bits), Expect = 0.00058, P = 0.00058
Identities = 18/37 (48%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH ++C
Sbjct: 391 KCFNCGKEGHIARNCRAPR-KKGCWKCGKEGHQMKDC 426
>FB|FBgn0040284 [details] [associations]
symbol:SF2 "SF2" species:7227 "Drosophila melanogaster"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS;NAS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0006376 "mRNA splice site selection"
evidence=ISS] [GO:0005634 "nucleus" evidence=IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0007095 GO:GO:0022008
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0071011
GO:GO:0071013 eggNOG:COG0724 GO:GO:0006376 HSSP:P52298
GeneTree:ENSGT00700000104103 KO:K12890 OMA:MPRGGSE ChiTaRS:SRSF1
EMBL:AF232773 EMBL:AF234157 EMBL:AY051919 RefSeq:NP_001247139.1
RefSeq:NP_652611.1 UniGene:Dm.4443 SMR:Q9V3W7 IntAct:Q9V3W7
MINT:MINT-336709 STRING:Q9V3W7 EnsemblMetazoa:FBtr0083272
EnsemblMetazoa:FBtr0304727 GeneID:53443 KEGG:dme:Dmel_CG6987
UCSC:CG6987-RA CTD:53443 FlyBase:FBgn0040284 InParanoid:Q9V3W7
OrthoDB:EOG41VHK9 GenomeRNAi:53443 NextBio:841181 Uniprot:Q9V3W7
Length = 255
Score = 100 (40.3 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF D RDADDA + +G D DG R+ VEF
Sbjct: 46 FAFVEFEDARDADDAVKARDGYDYDGYRLRVEF 78
Score = 36 (17.7 bits), Expect = 0.00060, Sum P(2) = 0.00060
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 201 NGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENG 236
+G GS G SR D D R++ S P G
Sbjct: 202 SGGGGGGSGGGGSR---DYRDRSRSRSFSSRPRRRG 234
>WB|WBGene00001601 [details] [associations]
symbol:glh-4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0042127 "regulation of cell
proliferation" evidence=IMP] [GO:0007276 "gamete generation"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0008432 "JUN kinase binding" evidence=IPI]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR001878
InterPro:IPR011545 Pfam:PF00098 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS50158 PROSITE:PS51194 SMART:SM00343
SMART:SM00490 GO:GO:0005524 GO:GO:0046872 GO:GO:0008270
GO:GO:0003723 GO:GO:0042127 Gene3D:4.10.60.10 SUPFAM:SSF57756
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0007276
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043186 GeneTree:ENSGT00620000087942
EMBL:AF079508 EMBL:FO081191 PIR:T32759 PIR:T43326
RefSeq:NP_491207.3 ProteinModelPortal:O76743 SMR:O76743
IntAct:O76743 STRING:O76743 PaxDb:O76743 PRIDE:O76743
EnsemblMetazoa:T12F5.3.1 EnsemblMetazoa:T12F5.3.2 GeneID:171941
KEGG:cel:CELE_T12F5.3 UCSC:T12F5.3.1 CTD:171941 WormBase:T12F5.3
InParanoid:O76743 NextBio:873335 Uniprot:O76743
Length = 1156
Score = 112 (44.5 bits), Expect = 0.00063, P = 0.00063
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 61 GRCFNCGIDGHWARDCKAGDW-KNKCYRCGERGHIERNCQN 100
G C NCGI+GH+A DC + C CG+ GH ++CQN
Sbjct: 616 GPCRNCGIEGHFAVDCDQPKVPRGPCRNCGQEGHFAKDCQN 656
>UNIPROTKB|P12495 [details] [associations]
symbol:gag "Gag polyprotein" species:11683 "Human
immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0010008 "endosome membrane" evidence=TAS] [GO:0016032 "viral
reproduction" evidence=TAS] [GO:0019061 "uncoating of virus"
evidence=TAS] [GO:0030260 "entry into host cell" evidence=TAS]
[GO:0046788 "egress of virus within host cell" evidence=TAS]
InterPro:IPR000071 InterPro:IPR000721 InterPro:IPR001878
InterPro:IPR008916 InterPro:IPR008919 InterPro:IPR010999
InterPro:IPR012344 Pfam:PF00098 Pfam:PF00540 Pfam:PF00607
PRINTS:PR00234 PROSITE:PS50158 SMART:SM00343 GO:GO:0005829
Reactome:REACT_116125 GO:GO:0005654 GO:GO:0030430 PDB:1SJE PDB:1SJH
PDBsum:1SJE PDBsum:1SJH GO:GO:0046872 GO:GO:0005198 GO:GO:0008270
GO:GO:0003723 GO:GO:0010008 GO:GO:0020002 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0042025
GO:GO:0019028 EMBL:M22639 GO:GO:0019076 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0046788 GO:GO:0019061
InterPro:IPR014817 Pfam:PF08705 PIR:S54377 PDB:3D3T PDBsum:3D3T
ProteinModelPortal:P12495 SMR:P12495 EvolutionaryTrace:P12495
Uniprot:P12495
Length = 501
Score = 108 (43.1 bits), Expect = 0.00073, P = 0.00073
Identities = 17/37 (45%), Positives = 27/37 (72%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C++CG+ GH ++C
Sbjct: 393 KCFNCGKEGHIAKNCRAPRRKG-CWKCGKEGHQLKDC 428
>UNIPROTKB|K7ERQ9 [details] [associations]
symbol:ZCCHC2 "Zinc finger CCHC domain-containing protein
2" species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
EMBL:AC064801 Ensembl:ENST00000591145 HGNC:HGNC:22916
Gene3D:4.10.60.10 InterPro:IPR001878 Pfam:PF00098 SMART:SM00343
PROSITE:PS50158 Uniprot:K7ERQ9
Length = 106
Score = 87 (35.7 bits), Expect = 0.00073, P = 0.00073
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 53 GRGPPP-GSGRCFNCGIDGHWARDCK 77
G GP G+ C+NCG+ GH+A+DCK
Sbjct: 50 GSGPKKNGNVSCYNCGVSGHYAQDCK 75
>TAIR|locus:2005719 [details] [associations]
symbol:AT1G75560 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA;ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0008150 "biological_process"
evidence=ND] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0006457 "protein folding" evidence=RCA] [GO:0009408 "response
to heat" evidence=RCA] [GO:0009644 "response to high light
intensity" evidence=RCA] [GO:0034976 "response to endoplasmic
reticulum stress" evidence=RCA] [GO:0042542 "response to hydrogen
peroxide" evidence=RCA] InterPro:IPR001878 Pfam:PF00098
PROSITE:PS50158 SMART:SM00343 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
eggNOG:COG5082 Gene3D:4.10.60.10 SUPFAM:SSF57756 EMBL:BT005709
EMBL:AK118306 EMBL:AK175193 EMBL:AK175269 EMBL:AK175304
EMBL:AK175841 EMBL:AK176208 EMBL:AK176516 EMBL:AK176616
EMBL:AK176626 IPI:IPI00543969 RefSeq:NP_001077828.1
RefSeq:NP_565112.1 UniGene:At.34758 ProteinModelPortal:Q8GXC5
SMR:Q8GXC5 PaxDb:Q8GXC5 PRIDE:Q8GXC5 EnsemblPlants:AT1G75560.1
EnsemblPlants:AT1G75560.2 GeneID:843892 KEGG:ath:AT1G75560
TAIR:At1g75560 InParanoid:Q8GXC5 OMA:NEGICHS PhylomeDB:Q8GXC5
ProtClustDB:CLSN2689214 ArrayExpress:Q8GXC5 Genevestigator:Q8GXC5
Uniprot:Q8GXC5
Length = 257
Score = 104 (41.7 bits), Expect = 0.00078, P = 0.00078
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 100
C NCG+ GH A +C A +++C+ C E GH+ NC N
Sbjct: 76 CNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSN 110
>UNIPROTKB|P03369 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11685 "HIV-1
M:B_ARV2/SF2" [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006278 "RNA-dependent DNA replication"
evidence=TAS] [GO:0016032 "viral reproduction" evidence=TAS]
[GO:0019061 "uncoating of virus" evidence=TAS] [GO:0030260 "entry
into host cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 DrugBank:DB01048 SUPFAM:SSF53098 GO:GO:0003964
GO:GO:0006278 Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260
GO:GO:0004190 Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630
GO:GO:0004523 GO:GO:0015074 GO:GO:0075713 GO:GO:0042025
GO:GO:0003887 DrugBank:DB00625 DrugBank:DB00238 DrugBank:DB00705
DrugBank:DB00943 GO:GO:0019028 EMBL:K02007 Gene3D:1.10.1200.30
Gene3D:1.10.150.90 Gene3D:1.10.375.10 SUPFAM:SSF47353
SUPFAM:SSF47943 SUPFAM:SSF47836 GO:GO:0019061 PDB:1TSQ PDB:1TSU
PDBsum:1TSQ PDBsum:1TSU GO:GO:0075732 Gene3D:1.10.10.200
InterPro:IPR017856 SUPFAM:SSF50122 SUPFAM:SSF46919
InterPro:IPR018061 Pfam:PF00077 PIR:A03968 PDB:1AID PDB:1B6J
PDB:1B6K PDB:1B6L PDB:1B6M PDB:1B6P PDB:1CPI PDB:1D4K PDB:1D4L
PDB:1F7A PDB:1KJ4 PDB:1KJ7 PDB:1KJF PDB:1KJG PDB:1KJH PDB:1KZK
PDB:1MT7 PDB:1MT8 PDB:1MT9 PDB:1MTB PDB:1MTR PDB:1N49 PDB:1T3R
PDB:1YTG PDB:1YTH PDB:1Z1H PDB:1Z1R PDB:2AID PDB:2F3K PDB:2FGU
PDB:2FGV PDB:2FNS PDB:2FNT PDB:2J9J PDB:2J9K PDB:2JE4 PDB:2NXD
PDB:2NXL PDB:2NXM PDB:2Q3K PDB:2QHY PDB:2QHZ PDB:2QI0 PDB:2QI1
PDB:2QI3 PDB:2QI4 PDB:2QI5 PDB:2QI6 PDB:2QI7 PDB:3AID PDB:3BXR
PDB:3BXS PDB:3EKP PDB:3EKQ PDB:3EKT PDB:3EKV PDB:3EKW PDB:3EKX
PDB:3EKY PDB:3EL0 PDB:3EL1 PDB:3EL4 PDB:3EL5 PDB:3EL9 PDB:3EM3
PDB:3EM4 PDB:3EM6 PDB:3GI0 PDB:3GI4 PDB:3GI5 PDB:3GI6 PDB:3HAU
PDB:3HAW PDB:3HVP PDB:3HZC PDB:3I2L PDB:3I7E PDB:3IAW PDB:3KA2
PDB:3LZV PDB:3MXD PDB:3MXE PDB:3O9F PDB:3O9G PDB:3O9H PDB:3O9I
PDB:3OXV PDB:3OXW PDB:3OXX PDB:3OY4 PDB:3R4B PDB:4EP2 PDB:4EP3
PDB:4EPJ PDB:4EQ0 PDB:4EQJ PDB:4HVP PDB:7HVP PDB:8HVP PDBsum:1AID
PDBsum:1B6J PDBsum:1B6K PDBsum:1B6L PDBsum:1B6M PDBsum:1B6P
PDBsum:1CPI PDBsum:1D4K PDBsum:1D4L PDBsum:1F7A PDBsum:1KJ4
PDBsum:1KJ7 PDBsum:1KJF PDBsum:1KJG PDBsum:1KJH PDBsum:1KZK
PDBsum:1MT7 PDBsum:1MT8 PDBsum:1MT9 PDBsum:1MTB PDBsum:1MTR
PDBsum:1N49 PDBsum:1T3R PDBsum:1YTG PDBsum:1YTH PDBsum:1Z1H
PDBsum:1Z1R PDBsum:2AID PDBsum:2F3K PDBsum:2FGU PDBsum:2FGV
PDBsum:2FNS PDBsum:2FNT PDBsum:2J9J PDBsum:2J9K PDBsum:2JE4
PDBsum:2NXD PDBsum:2NXL PDBsum:2NXM PDBsum:2Q3K PDBsum:2QHY
PDBsum:2QHZ PDBsum:2QI0 PDBsum:2QI1 PDBsum:2QI3 PDBsum:2QI4
PDBsum:2QI5 PDBsum:2QI6 PDBsum:2QI7 PDBsum:3AID PDBsum:3BXR
PDBsum:3BXS PDBsum:3EKP PDBsum:3EKQ PDBsum:3EKT PDBsum:3EKV
PDBsum:3EKW PDBsum:3EKX PDBsum:3EKY PDBsum:3EL0 PDBsum:3EL1
PDBsum:3EL4 PDBsum:3EL5 PDBsum:3EL9 PDBsum:3EM3 PDBsum:3EM4
PDBsum:3EM6 PDBsum:3GI0 PDBsum:3GI4 PDBsum:3GI5 PDBsum:3GI6
PDBsum:3HAU PDBsum:3HAW PDBsum:3HVP PDBsum:3HZC PDBsum:3I2L
PDBsum:3I7E PDBsum:3IAW PDBsum:3KA2 PDBsum:3LZV PDBsum:3MXD
PDBsum:3MXE PDBsum:3O9F PDBsum:3O9G PDBsum:3O9H PDBsum:3O9I
PDBsum:3OXV PDBsum:3OXW PDBsum:3OXX PDBsum:3OY4 PDBsum:3R4B
PDBsum:4EP2 PDBsum:4EP3 PDBsum:4EPJ PDBsum:4EQ0 PDBsum:4EQJ
PDBsum:4HVP PDBsum:7HVP PDBsum:8HVP ProteinModelPortal:P03369
SMR:P03369 BRENDA:3.4.23.16 DrugBank:DB00900 DrugBank:DB00879
DrugBank:DB00709 DrugBank:DB00649 DrugBank:DB00300 DrugBank:DB00495
EvolutionaryTrace:P03369 GO:GO:0004533 GO:GO:0039651 GO:GO:0046797
Gene3D:2.30.30.10 Uniprot:P03369
Length = 1437
Score = 112 (44.5 bits), Expect = 0.00081, P = 0.00081
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH A++C+A K C+RCG GH ++C
Sbjct: 393 KCFNCGKEGHIAKNCRAPR-KKGCWRCGREGHQMKDC 428
>UNIPROTKB|P20875 [details] [associations]
symbol:gag-pol "Gag-Pol polyprotein" species:11688 "Human
immunodeficiency virus type 1 (JRCSF ISOLATE)" [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006278 "RNA-dependent DNA replication" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0019061
"uncoating of virus" evidence=TAS] [GO:0030260 "entry into host
cell" evidence=TAS] InterPro:IPR000071 InterPro:IPR000477
InterPro:IPR000721 InterPro:IPR001037 InterPro:IPR001584
InterPro:IPR001878 InterPro:IPR001969 InterPro:IPR001995
InterPro:IPR002156 InterPro:IPR003308 InterPro:IPR008916
InterPro:IPR008919 InterPro:IPR010659 InterPro:IPR010661
InterPro:IPR010999 InterPro:IPR012337 InterPro:IPR012344
Pfam:PF00075 Pfam:PF00078 Pfam:PF00098 Pfam:PF00540 Pfam:PF00552
Pfam:PF00607 Pfam:PF00665 Pfam:PF02022 Pfam:PF06815 Pfam:PF06817
PRINTS:PR00234 PROSITE:PS00141 PROSITE:PS50158 PROSITE:PS50175
PROSITE:PS50876 PROSITE:PS50878 PROSITE:PS50879 PROSITE:PS50994
PROSITE:PS51027 SMART:SM00343 GO:GO:0005829 Reactome:REACT_116125
GO:GO:0005654 GO:GO:0030430 GO:GO:0016020 GO:GO:0046872
GO:GO:0003677 GO:GO:0005198 GO:GO:0008270 GO:GO:0006508
GO:GO:0003723 GO:GO:0046718 GO:GO:0020002 GO:GO:0006310
GO:GO:0090305 SUPFAM:SSF53098 GO:GO:0003964 GO:GO:0006278
Gene3D:4.10.60.10 SUPFAM:SSF57756 GO:GO:0030260 GO:GO:0004190
Gene3D:2.40.70.10 InterPro:IPR021109 SUPFAM:SSF50630 GO:GO:0004523
GO:GO:0015074 GO:GO:0075713 GO:GO:0042025 GO:GO:0003887
GO:GO:0019028 EMBL:M38429 Gene3D:1.10.1200.30 Gene3D:1.10.150.90
Gene3D:1.10.375.10 SUPFAM:SSF47353 SUPFAM:SSF47943 SUPFAM:SSF47836
GO:GO:0019061 GO:GO:0075732 Gene3D:1.10.10.200 InterPro:IPR017856
SUPFAM:SSF50122 SUPFAM:SSF46919 InterPro:IPR018061 Pfam:PF00077
PDB:1KJ4 PDB:1KJ7 PDBsum:1KJ4 PDBsum:1KJ7 GO:GO:0004533
GO:GO:0039651 GO:GO:0046797 Gene3D:2.30.30.10
ProteinModelPortal:P20875 SMR:P20875 EvolutionaryTrace:P20875
Uniprot:P20875
Length = 1439
Score = 112 (44.5 bits), Expect = 0.00081, P = 0.00081
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNC 98
+CFNCG +GH AR+C+A K C++CG+ GH + C
Sbjct: 391 KCFNCGKEGHIARNCRAPR-KKGCWKCGKEGHQMKEC 426
>UNIPROTKB|E1BZR6 [details] [associations]
symbol:ZCCHC9 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0010923 "negative
regulation of phosphatase activity" evidence=IEA]
InterPro:IPR001878 Pfam:PF00098 PROSITE:PS50158 SMART:SM00343
GO:GO:0046872 GO:GO:0008270 GO:GO:0003676 Gene3D:4.10.60.10
SUPFAM:SSF57756 GO:GO:0010923 CTD:84240 OMA:DSQEVRE
GeneTree:ENSGT00510000047308 EMBL:AADN02047870 IPI:IPI00571897
RefSeq:XP_424900.1 UniGene:Gga.34920 Ensembl:ENSGALT00000025157
GeneID:427320 KEGG:gga:427320 NextBio:20828598 Uniprot:E1BZR6
Length = 235
Score = 103 (41.3 bits), Expect = 0.00084, P = 0.00084
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 59 GSGRCFNCGIDGHWARDCKA------GDWKN-KCYRCGERGHIERNCQNSPKKL 105
G+G C+ CG H CKA G + KC+ CGE GH+ R+C ++PK L
Sbjct: 118 GTGICYRCGSTEHDIGKCKAKIDPAVGAFPYAKCFICGEMGHLSRSCPDNPKGL 171
>UNIPROTKB|I3LBN9 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
GeneTree:ENSGT00700000104309 OMA:YDDREYY Ensembl:ENSSSCT00000025696
Uniprot:I3LBN9
Length = 280
Score = 104 (41.7 bits), Expect = 0.00094, P = 0.00094
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV F + DA +A+ NG ++DG RI V+F+ Y+GR P GS R
Sbjct: 151 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSR 209
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERG 92
+ D + R D+ ++ YR G G
Sbjct: 210 RRDY-YDRGYDRGYDDRDYYSRSYRGGGGG 238
>UNIPROTKB|E1BY00 [details] [associations]
symbol:SRSF5 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0009611 GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104103 EMBL:AADN02003156
IPI:IPI00590971 ProteinModelPortal:E1BY00
Ensembl:ENSGALT00000015342 ArrayExpress:E1BY00 Uniprot:E1BY00
Length = 266
Score = 93 (37.8 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
+KR F FV DPRDADDA Y L+G+++ R+ +E A
Sbjct: 35 LKRGFGFV---DPRDADDAVYELDGKELCSERVTIEHA 69
Score = 44 (20.5 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 184 RSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVD 218
+S RSP P ++ Q GS S R KS S VD
Sbjct: 222 KSRSVSRSPMP-EKSQKRGS----SSRSKSPSSVD 251
>UNIPROTKB|Q3ZBT6 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9913 "Bos taurus" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232
GeneTree:ENSGT00700000104309 HSSP:P62995 KO:K12897
OrthoDB:EOG4BVRW2 EMBL:BC103113 IPI:IPI00717759
RefSeq:NP_001029948.1 UniGene:Bt.49333 ProteinModelPortal:Q3ZBT6
SMR:Q3ZBT6 STRING:Q3ZBT6 PRIDE:Q3ZBT6 Ensembl:ENSBTAT00000002225
GeneID:615156 KEGG:bta:615156 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 InParanoid:Q3ZBT6 OMA:YDDREYY NextBio:20899475
Uniprot:Q3ZBT6
Length = 288
Score = 104 (41.7 bits), Expect = 0.00099, P = 0.00099
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV F + DA +A+ NG ++DG RI V+F+ Y+GR P GS R
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSR 217
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERG 92
+ D + R D+ ++ YR G G
Sbjct: 218 RRDY-YDRGYDRGYDDRDYYSRSYRGGGGG 246
>UNIPROTKB|E2RD37 [details] [associations]
symbol:TRA2B "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00700000104309 OMA:YDDREYY EMBL:AAEX03017294
ProteinModelPortal:E2RD37 PRIDE:E2RD37 Ensembl:ENSCAFT00000021194
NextBio:20853966 Uniprot:E2RD37
Length = 288
Score = 104 (41.7 bits), Expect = 0.00099, P = 0.00099
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV F + DA +A+ NG ++DG RI V+F+ Y+GR P GS R
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSR 217
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERG 92
+ D + R D+ ++ YR G G
Sbjct: 218 RRDY-YDRGYDRGYDDRDYYSRSYRGGGGG 246
>UNIPROTKB|P62995 [details] [associations]
symbol:TRA2B "Transformer-2 protein homolog beta"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000375 "RNA splicing, via
transesterification reactions" evidence=TAS] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
EMBL:CH471052 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0048026 GO:GO:0000381 HOGENOM:HOG000276232 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:U61267 EMBL:U87836 EMBL:AF057159 EMBL:U68063
EMBL:AK301118 EMBL:BC000160 EMBL:BC000451 EMBL:BC005898
IPI:IPI00220938 IPI:IPI00301503 IPI:IPI00472633
RefSeq:NP_001230808.1 RefSeq:NP_004584.1 UniGene:Hs.533122 PDB:2CQC
PDB:2KXN PDB:2RRA PDB:2RRB PDBsum:2CQC PDBsum:2KXN PDBsum:2RRA
PDBsum:2RRB ProteinModelPortal:P62995 SMR:P62995 DIP:DIP-42278N
IntAct:P62995 MINT:MINT-5004415 STRING:P62995 PhosphoSite:P62995
DMDM:51703330 PaxDb:P62995 PRIDE:P62995 DNASU:6434
Ensembl:ENST00000342294 Ensembl:ENST00000382191
Ensembl:ENST00000453386 Ensembl:ENST00000456380 GeneID:6434
KEGG:hsa:6434 UCSC:uc003fpv.3 GeneCards:GC03M185632
H-InvDB:HIX0003928 HGNC:HGNC:10781 HPA:CAB011692 MIM:602719
neXtProt:NX_P62995 PharmGKB:PA35697 InParanoid:P62995
PhylomeDB:P62995 ChiTaRS:TRA2B EvolutionaryTrace:P62995
GenomeRNAi:6434 NextBio:24991 Bgee:P62995 CleanEx:HS_SFRS10
Genevestigator:P62995 GermOnline:ENSG00000136527 Uniprot:P62995
Length = 288
Score = 104 (41.7 bits), Expect = 0.00099, P = 0.00099
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV F + DA +A+ NG ++DG RI V+F+ Y+GR P GS R
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSR 217
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERG 92
+ D + R D+ ++ YR G G
Sbjct: 218 RRDY-YDRGYDRGYDDRDYYSRSYRGGGGG 246
>MGI|MGI:106016 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:106016 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0048026 GO:GO:0000381
HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309 KO:K12897
OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815 HOVERGEN:HBG104971
OMA:YDDREYY EMBL:X80232 EMBL:AK049573 EMBL:AK077418 EMBL:AK080378
EMBL:BC061177 IPI:IPI00139259 IPI:IPI00457594 PIR:S68798
RefSeq:NP_033212.1 UniGene:Mm.210352 UniGene:Mm.389440
UniGene:Mm.442193 ProteinModelPortal:P62996 SMR:P62996
STRING:P62996 PhosphoSite:P62996 PaxDb:P62996 PRIDE:P62996
Ensembl:ENSMUST00000161286 Ensembl:ENSMUST00000162413 GeneID:20462
KEGG:mmu:20462 UCSC:uc007ysc.1 InParanoid:P62996 NextBio:298551
Bgee:P62996 Genevestigator:P62996 GermOnline:ENSMUSG00000022858
Uniprot:P62996
Length = 288
Score = 104 (41.7 bits), Expect = 0.00099, P = 0.00099
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV F + DA +A+ NG ++DG RI V+F+ Y+GR P GS R
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSR 217
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERG 92
+ D + R D+ ++ YR G G
Sbjct: 218 RRDY-YDRGYDRGYDDRDYYSRSYRGGGGG 246
>RGD|619886 [details] [associations]
symbol:Tra2b "transformer 2 beta homolog (Drosophila)"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000302 "response to reactive oxygen species"
evidence=IEP] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO;ISS] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISO;ISS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;ISS] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISO;ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:619886 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000302 GO:GO:0000398 GO:GO:0048026
GO:GO:0000381 HOGENOM:HOG000276232 GeneTree:ENSGT00700000104309
KO:K12897 OrthoDB:EOG4BVRW2 CTD:6434 eggNOG:NOG297815
HOVERGEN:HBG104971 EMBL:D49708 EMBL:BC070948 IPI:IPI00202484
RefSeq:NP_476460.1 UniGene:Rn.8538 ProteinModelPortal:P62997
SMR:P62997 IntAct:P62997 STRING:P62997 PhosphoSite:P62997
PRIDE:P62997 Ensembl:ENSRNOT00000002429 GeneID:117259
KEGG:rno:117259 UCSC:RGD:619886 InParanoid:P62997 NextBio:620130
Genevestigator:P62997 GermOnline:ENSRNOG00000001783 Uniprot:P62997
Length = 288
Score = 104 (41.7 bits), Expect = 0.00099, P = 0.00099
Identities = 31/90 (34%), Positives = 44/90 (48%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAXXXXXXXXXSREYLGRGPPPGSGR 62
R FAFV F + DA +A+ NG ++DG RI V+F+ Y+GR P GS R
Sbjct: 159 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKRPHTPTPGIYMGR-PTYGSSR 217
Query: 63 CFNCGIDGHWARDCKAGDWKNKCYRCGERG 92
+ D + R D+ ++ YR G G
Sbjct: 218 RRDY-YDRGYDRGYDDRDYYSRSYRGGGGG 246
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.314 0.136 0.430 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 269 173 0.00097 108 3 11 23 0.49 32
31 0.48 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 220
No. of states in DFA: 536 (57 KB)
Total size of DFA: 165 KB (2099 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.12u 0.09s 18.21t Elapsed: 00:00:02
Total cpu time: 18.15u 0.09s 18.24t Elapsed: 00:00:03
Start: Thu May 9 22:01:06 2013 End: Thu May 9 22:01:09 2013
WARNINGS ISSUED: 1