BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024281
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FYB7|RSZ32_ARATH Serine/arginine-rich splicing factor RS2Z32 OS=Arabidopsis thaliana
GN=RS2Z32 PE=1 SV=1
Length = 284
Score = 190 bits (482), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 147/275 (53%), Positives = 168/275 (61%), Gaps = 40/275 (14%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGS 60
MKRD+AFVEFSDPRDADDARY L+GRD DGSRI VE +RG PRG SR+ RGPPPGS
Sbjct: 42 MKRDYAFVEFSDPRDADDARYYLDGRDFDGSRITVEASRGAPRG---SRDNGSRGPPPGS 98
Query: 61 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN--SPKKLRRPRSYSRSPSPR 118
GRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIERNC+N SPKK R+ SYSRSP
Sbjct: 99 GRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPSPKKARQGGSYSRSPV-- 156
Query: 119 RGRSRSRSYSRGRSDSRSRSPVKRDRSVERFERRTRSPRD-SRSPKRRRNSPPSSKGRKR 177
+SRS R S SRS S + RR +S D SRSPK S S KGR +
Sbjct: 157 --KSRSPRRRRSPSRSRSYSRGRSYSRSRSPVRREKSVEDRSRSPKAMERS-VSPKGRDQ 213
Query: 178 SPTPDERSPQDQRSPSPRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNYRSPPEENGR 237
S +PD + D GS+Y GSP+ ++ +G RN SP G
Sbjct: 214 SLSPDRKVI---------DASPKRGSDYDGSPK-------ENGNG---RNSASPIVGGGE 254
Query: 238 SRSRSLSPVPRD--DRSPIDDDDNHG--DPRGSES 268
SPV + DRSPIDD+ P+GSES
Sbjct: 255 ------SPVGLNGQDRSPIDDEAELSRPSPKGSES 283
>sp|Q8VYA5|RSZ33_ARATH Serine/arginine-rich splicing factor RS2Z33 OS=Arabidopsis thaliana
GN=RS2Z33 PE=1 SV=1
Length = 290
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 87/107 (81%), Positives = 96/107 (89%), Gaps = 3/107 (2%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGS 60
MKRD+AFVEF DPRDADDAR+ L+GRD DGSRI VEF+RG PRG SR++ RGPPPG+
Sbjct: 42 MKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGAPRG---SRDFDSRGPPPGA 98
Query: 61 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRR 107
GRCFNCG+DGHWARDC AGDWKNKCYRCGERGHIERNC+NSPKKLRR
Sbjct: 99 GRCFNCGVDGHWARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRR 145
>sp|Q8VE97|SRSF4_MOUSE Serine/arginine-rich splicing factor 4 OS=Mus musculus GN=Srsf4
PE=2 SV=1
Length = 489
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40
+K + FVEF D RDADDA Y LNG+D+ G R+IVE ARG
Sbjct: 33 LKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARG 72
>sp|Q08170|SRSF4_HUMAN Serine/arginine-rich splicing factor 4 OS=Homo sapiens GN=SRSF4
PE=1 SV=2
Length = 494
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 30/40 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40
+K + FVEF D RDADDA Y LNG+D+ G R+IVE ARG
Sbjct: 33 LKNGYGFVEFDDLRDADDAVYELNGKDLCGERVIVEHARG 72
>sp|Q02836|POL_SIVG1 Gag-Pol polyprotein OS=Simian immunodeficiency virus agm.grivet
(isolate AGM gr-1) GN=gag-pol PE=3 SV=2
Length = 1472
Score = 58.5 bits (140), Expect = 5e-08, Method: Composition-based stats.
Identities = 48/191 (25%), Positives = 81/191 (42%), Gaps = 31/191 (16%)
Query: 57 PPGSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRPRSYSRSPS 116
P G +CFNCG GH R+CKA + KC++CG+ GH+ ++C+N
Sbjct: 386 PRGPLKCFNCGKFGHMQRECKAPR-QIKCFKCGKIGHMAKDCKNGQANF----------- 433
Query: 117 PRRGRSRSRSYSRGRSDSRSRSPVKRDRSVERFERRTRSPRDSRSPKRRRNSPPSSKGRK 176
R + GRS+++ ++R S T SP + S + + +PP+
Sbjct: 434 -------FRVWPLGRSETKKFCAIQRRHSWS----GTNSPPNGNSLRSSKEAPPAVCREG 482
Query: 177 RSPTPDERSPQD---QRSPS-----PRDRRQANGSEYSGSPRGKSRSPVDDADGPEDRNY 228
+P ER+ ++ +RS P RR G+P D ++++
Sbjct: 483 TAPERGERTDKETEGERSGGCFLELPLWRRPMKRVIIEGTPVQALLDTGADDTIIQEKDL 542
Query: 229 RSPPEENGRSR 239
PP + RS+
Sbjct: 543 HFPPHKPWRSK 553
>sp|Q16629|SRSF7_HUMAN Serine/arginine-rich splicing factor 7 OS=Homo sapiens GN=SRSF7
PE=1 SV=1
Length = 238
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPG----- 59
FAFVEF DPRDA+DA L+G+ + GSR+ VE + G PR R R PP
Sbjct: 49 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR-----RSRFDR--PPARRPFD 101
Query: 60 -SGRCFNCGIDGHWARDC 76
+ RC+ CG GH+A DC
Sbjct: 102 PNDRCYECGEKGHYAYDC 119
>sp|Q3T106|SRSF7_BOVIN Serine/arginine-rich splicing factor 7 OS=Bos taurus GN=SRSF7 PE=2
SV=1
Length = 235
Score = 58.2 bits (139), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 13/78 (16%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPG----- 59
FAFVEF DPRDA+DA L+G+ + GSR+ VE + G PR R R PP
Sbjct: 49 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR-----RSRFDR--PPARRPFD 101
Query: 60 -SGRCFNCGIDGHWARDC 76
+ RC+ CG GH+A DC
Sbjct: 102 PNDRCYECGEKGHYAYDC 119
>sp|Q8BL97|SRSF7_MOUSE Serine/arginine-rich splicing factor 7 OS=Mus musculus GN=Srsf7
PE=1 SV=1
Length = 267
Score = 57.8 bits (138), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 45/79 (56%), Gaps = 13/79 (16%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPG----- 59
FAFVEF DPRDA+DA L+G+ + GSR+ VE + G PR R R PP
Sbjct: 78 FAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR-----RSRFDR--PPARRPFD 130
Query: 60 -SGRCFNCGIDGHWARDCK 77
+ RC+ CG GH+A DC
Sbjct: 131 PNDRCYECGEKGHYAYDCH 149
>sp|Q1A267|POL_SIVMB Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag-pol PE=3 SV=4
Length = 1438
Score = 57.0 bits (136), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/127 (26%), Positives = 61/127 (48%), Gaps = 8/127 (6%)
Query: 15 DADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGHWAR 74
+ D+ + G +R++ E R++ G P +CFNCG +GH AR
Sbjct: 342 EGDEPAFQGVGGPSHKARVLAEAMSQAQHSNDAKRQFKG---PKRIVKCFNCGKEGHIAR 398
Query: 75 DCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRPRSYSRSPSPRRGRSRSRSYSRGRSDS 134
+CKA K C++CG+ GH RNC N R+ + + + ++G++R R++S
Sbjct: 399 NCKAPRRKG-CWKCGQEGHQMRNCTNE----RQANFFRETLAFQQGKAREFPSEETRTNS 453
Query: 135 RSRSPVK 141
+ ++
Sbjct: 454 STNRELR 460
>sp|Q1A249|POL_SIVEK Gag-Pol polyprotein OS=Simian immunodeficiency virus (isolate
EK505) GN=gag-pol PE=3 SV=3
Length = 1448
Score = 56.2 bits (134), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKKLRRPRSYSRSPSPRRGR 121
+CFNCG +GH AR+CKA K C++CG+ GH ++C++ ++ R S +
Sbjct: 394 KCFNCGKEGHLARNCKAPR-KKGCWKCGQEGHQMKDCRSGERQFFREGLASL-------Q 445
Query: 122 SRSRSYSRGRSDSRSRSPVKRDRSVERFERRTRSPRDSRSPKRRRNSPPS 171
+R + + R+ SP R+ V E T R+ R + R S P+
Sbjct: 446 REARKFPPDNNKERANSPSNRELWVSGGEDHT-GDREGRKGEDRELSVPT 494
>sp|P26686|SRR55_DROME Serine-arginine protein 55 OS=Drosophila melanogaster GN=B52 PE=1
SV=4
Length = 376
Score = 55.8 bits (133), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRG 44
+K + FVEF D RDADDA Y LNG+++ G R++VE ARG RG
Sbjct: 35 IKNGYGFVEFEDYRDADDAVYELNGKELLGERVVVEPARGTARG 78
>sp|Q13247|SRSF6_HUMAN Serine/arginine-rich splicing factor 6 OS=Homo sapiens GN=SRSF6
PE=1 SV=2
Length = 344
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40
+K + FVEF D RDADDA Y LNG+++ G R+IVE ARG
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARG 72
>sp|Q3B7L6|SRSF6_BOVIN Serine/arginine-rich splicing factor 6 OS=Bos taurus GN=SRSF6
PE=2 SV=1
Length = 345
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/40 (60%), Positives = 30/40 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40
+K + FVEF D RDADDA Y LNG+++ G R+IVE ARG
Sbjct: 33 LKNGYGFVEFEDSRDADDAVYELNGKELCGERVIVEHARG 72
>sp|Q10021|RSP5_CAEEL Probable splicing factor, arginine/serine-rich 5
OS=Caenorhabditis elegans GN=rsp-5 PE=3 SV=3
Length = 208
Score = 54.3 bits (129), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%), Gaps = 2/46 (4%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGS--RIIVEFARGGPRG 44
MK FAFV+F D RDA+DA + L+G+ ++GS R++VE ARG PRG
Sbjct: 33 MKYGFAFVDFEDSRDAEDACHDLDGKTMEGSSMRLVVEMARGKPRG 78
>sp|Q23120|RSP2_CAEEL Probable splicing factor, arginine/serine-rich 2 OS=Caenorhabditis
elegans GN=rsp-2 PE=3 SV=1
Length = 281
Score = 52.0 bits (123), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 36/91 (39%), Positives = 45/91 (49%), Gaps = 18/91 (19%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR-----------GGPRG----- 44
MK F FV+F D RDADDA + LNG+++ G R+I+EF R G RG
Sbjct: 33 MKNGFGFVDFQDQRDADDAVHDLNGKELCGERVILEFPRRKVGYNEERSGSGFRGREPTF 92
Query: 45 -PGGSREYLGRGPPPGSGRCFNCGIDGHWAR 74
GG R++ R P S R F ID R
Sbjct: 93 RKGGERQFSNRYSRPCSTR-FRLVIDNLSTR 122
>sp|Q1A268|GAG_SIVMB Gag polyprotein OS=Simian immunodeficiency virus (isolate MB66)
GN=gag PE=3 SV=3
Length = 499
Score = 52.0 bits (123), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 100
+CFNCG +GH AR+CKA + C++CG+ GH RNC N
Sbjct: 386 KCFNCGKEGHIARNCKAPR-RKGCWKCGQEGHQMRNCTN 423
>sp|Q8WXF0|SRS12_HUMAN Serine/arginine-rich splicing factor 12 OS=Homo sapiens GN=SRSF12
PE=2 SV=1
Length = 261
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 32/44 (72%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPG 46
R FA+V+F D RDA+DA Y+LN + V G +I ++FA+G + PG
Sbjct: 51 RGFAYVQFEDVRDAEDALYNLNRKWVCGRQIEIQFAQGDRKTPG 94
>sp|Q09167|SRSF5_RAT Serine/arginine-rich splicing factor 5 OS=Rattus norvegicus
GN=Srsf5 PE=2 SV=1
Length = 269
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 36
+KR F FVEF DPRDADDA Y L+G+++ R+ +E
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIE 70
>sp|O35326|SRSF5_MOUSE Serine/arginine-rich splicing factor 5 OS=Mus musculus GN=Srsf5
PE=1 SV=2
Length = 269
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 36
+KR F FVEF DPRDADDA Y L+G+++ R+ +E
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIE 70
>sp|Q13243|SRSF5_HUMAN Serine/arginine-rich splicing factor 5 OS=Homo sapiens GN=SRSF5
PE=1 SV=1
Length = 272
Score = 48.1 bits (113), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVE 36
+KR F FVEF DPRDADDA Y L+G+++ R+ +E
Sbjct: 35 LKRGFGFVEFEDPRDADDAVYELDGKELCSERVTIE 70
>sp|Q23121|RSP1_CAEEL Probable splicing factor, arginine/serine-rich 1
OS=Caenorhabditis elegans GN=rsp-1 PE=3 SV=1
Length = 312
Score = 47.8 bits (112), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 30/39 (76%)
Query: 1 MKRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39
+K F FVEF D RDA+DA + LNG+++ G R+I+++++
Sbjct: 34 LKNGFGFVEFDDKRDAEDAVHDLNGKELGGERVILDYSK 72
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 47.8 bits (112), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39
FAFVEF DPRDA+DA Y+ +G D DG R+ VEF R
Sbjct: 55 FAFVEFEDPRDAEDAVYARDGYDYDGYRLRVEFPR 89
>sp|P84104|SRSF3_MOUSE Serine/arginine-rich splicing factor 3 OS=Mus musculus GN=Srsf3
PE=1 SV=1
Length = 164
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSG 61
FAFVEF DPRDA DA L+GR + G R+ VE + G R SR RGPPP G
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWG 97
>sp|P84103|SRSF3_HUMAN Serine/arginine-rich splicing factor 3 OS=Homo sapiens GN=SRSF3
PE=1 SV=1
Length = 164
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSG 61
FAFVEF DPRDA DA L+GR + G R+ VE + G R SR RGPPP G
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWG 97
>sp|Q3SZR8|SRSF3_BOVIN Serine/arginine-rich splicing factor 3 OS=Bos taurus GN=SRSF3
PE=2 SV=1
Length = 164
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSG 61
FAFVEF DPRDA DA L+GR + G R+ VE + G R SR RGPPP G
Sbjct: 48 FAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEKR----SRN---RGPPPSWG 97
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/35 (65%), Positives = 26/35 (74%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39
FAFVEF DPRDA+DA Y +G D DG R+ VEF R
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 90
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF DPRDA+DA Y +G D DG R+ VEF
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1
PE=2 SV=3
Length = 248
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF DPRDA+DA Y +G D DG R+ VEF
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF DPRDA+DA Y +G D DG R+ VEF
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF DPRDA+DA Y +G D DG R+ VEF
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1
PE=2 SV=1
Length = 248
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF DPRDA+DA Y +G D DG R+ VEF
Sbjct: 56 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 88
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/33 (66%), Positives = 25/33 (75%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37
FAFVEF DPRDA+DA Y +G D DG R+ VEF
Sbjct: 55 FAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEF 87
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/37 (56%), Positives = 26/37 (70%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41
+AFVEF D RDA+DA + +G D DG R+ VE A GG
Sbjct: 47 YAFVEFDDARDAEDAIHGRDGYDFDGHRLRVELAHGG 83
>sp|Q69KL9|RZ21A_ORYSJ Serine/arginine-rich splicing factor RSZ21A OS=Oryza sativa subsp.
japonica GN=RSZ21A PE=2 SV=1
Length = 185
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRII-VEFARGGPRGPGGSREYLGRGPPPGSGRC 63
FAF++F D RDA DA RD+DG VE +R G GG Y +C
Sbjct: 40 FAFIDFDDRRDAQDAI-----RDIDGKNGWRVELSRNASSGRGGRDRY-----GSSESKC 89
Query: 64 FNCGIDGHWARDCKA 78
+ CG GH+AR+C+
Sbjct: 90 YECGETGHFARECRL 104
>sp|Q6K9C3|RZP23_ORYSJ Serine/arginine-rich splicing factor RSZ23 OS=Oryza sativa subsp.
japonica GN=RSZ23 PE=2 SV=1
Length = 200
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 16/77 (20%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRG---PGGSREYLGRGPPPGSG 61
FAF++F D RDA+DA L+G+ +G R+ + G RG GGS
Sbjct: 40 FAFIDFDDRRDAEDAIRDLDGK--NGWRVELSTKAGSGRGRDRSGGS-----------DM 86
Query: 62 RCFNCGIDGHWARDCKA 78
+C+ CG GH+AR+C+
Sbjct: 87 KCYECGEPGHFARECRL 103
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRG 55
R FA+V+F D RDA+DA ++L+ + + G +I ++FA+G + P + GR
Sbjct: 51 RGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPRGPGGSREYLGRG 55
R FA+V+F D RDA+DA ++L+ + + G +I ++FA+G + P + GR
Sbjct: 51 RGFAYVQFEDVRDAEDALHNLDRKWICGRQIEIQFAQGDRKTPNQMKAKEGRN 103
>sp|Q6K4N0|RSZ21_ORYSJ Serine/arginine-rich splicing factor RSZ21 OS=Oryza sativa subsp.
japonica GN=RSZP21 PE=2 SV=1
Length = 185
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 16/77 (20%)
Query: 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIV---EFARGGPRGPGGSREYLGRGPPPGSG 61
FAF++F D RDA+DA L+G+ +G R+ + +RGG GGS
Sbjct: 40 FAFIDFDDKRDAEDALRDLDGK--NGWRVELSRNSSSRGGRDRHGGSEM----------- 86
Query: 62 RCFNCGIDGHWARDCKA 78
+C+ CG GH+AR+C+
Sbjct: 87 KCYECGETGHFARECRL 103
>sp|P30352|SRSF2_CHICK Serine/arginine-rich splicing factor 2 OS=Gallus gallus GN=SRSF2
PE=2 SV=1
Length = 221
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 5/57 (8%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG-PRGPGGSREYLGRGPPP 58
R FAFV F D RDA+DA +++G +DG + V+ AR G P SR RGPPP
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSHHSR----RGPPP 107
>sp|Q10193|SRP1_SCHPO Pre-mRNA-splicing factor srp1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=srp1 PE=1 SV=3
Length = 275
Score = 40.8 bits (94), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%), Gaps = 2/42 (4%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVD--GSRIIVEFARGGP 42
R FAFVE+ D RDA+DA Y ++GR ++ G + VE+A+ P
Sbjct: 47 RPFAFVEYEDSRDAEDAYYEVHGRRLERGGGVLRVEWAKQPP 88
>sp|Q9SEU4|SR33_ARATH Serine/arginine-rich splicing factor 33 OS=Arabidopsis thaliana
GN=SR33 PE=1 SV=1
Length = 287
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
R F FV+F DP DA DA++ ++G + G + V FA
Sbjct: 77 RGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
>sp|Q9BRL6|SRSF8_HUMAN Serine/arginine-rich splicing factor 8 OS=Homo sapiens GN=SRSF8
PE=1 SV=1
Length = 282
Score = 40.4 bits (93), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41
R FAFV F D RDA DA +++G ++DG + V+ AR G
Sbjct: 55 RGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93
>sp|Q91VM5|RMXL1_MOUSE RNA binding motif protein, X-linked-like-1 OS=Mus musculus
GN=Rbmxl1 PE=1 SV=1
Length = 388
Score = 40.0 bits (92), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
R FAFV F P DA DA +NG+ +DG I VE A
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
>sp|Q4V898|RBMX_RAT RNA-binding motif protein, X chromosome OS=Rattus norvegicus
GN=Rbmx PE=1 SV=1
Length = 390
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
R FAFV F P DA DA +NG+ +DG I VE A
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
>sp|Q9WV02|RBMX_MOUSE RNA-binding motif protein, X chromosome OS=Mus musculus GN=Rbmx
PE=1 SV=1
Length = 391
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
R FAFV F P DA DA +NG+ +DG I VE A
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
>sp|Q6IRQ4|RBMX_XENLA RNA-binding motif protein, X chromosome OS=Xenopus laevis GN=rbmx
PE=2 SV=1
Length = 370
Score = 40.0 bits (92), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/36 (55%), Positives = 22/36 (61%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
R FAFV F P DA DA LNG+ +DG I VE A
Sbjct: 49 RGFAFVTFESPADAKDAARELNGKALDGKPIKVEQA 84
>sp|A5A6M3|RBMX_PANTR RNA-binding motif protein, X chromosome OS=Pan troglodytes
GN=RBMX PE=2 SV=1
Length = 391
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
R FAFV F P DA DA +NG+ +DG I VE A
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
>sp|P38159|RBMX_HUMAN RNA-binding motif protein, X chromosome OS=Homo sapiens GN=RBMX
PE=1 SV=3
Length = 391
Score = 40.0 bits (92), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
R FAFV F P DA DA +NG+ +DG I VE A
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
>sp|Q5R1W5|SRSF2_PANTR Serine/arginine-rich splicing factor 2 OS=Pan troglodytes
GN=SRSF2 PE=2 SV=3
Length = 221
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 26/39 (66%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41
R FAFV F D RDA+DA +++G +DG + V+ AR G
Sbjct: 55 RGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYG 93
>sp|Q4R7F0|RBMX_MACFA RNA-binding motif protein, X chromosome OS=Macaca fascicularis
GN=RBMX PE=2 SV=1
Length = 391
Score = 39.7 bits (91), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38
R FAFV F P DA DA +NG+ +DG I VE A
Sbjct: 49 RGFAFVTFESPADAKDAARDMNGKSLDGKAIKVEQA 84
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.133 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,605,203
Number of Sequences: 539616
Number of extensions: 6541367
Number of successful extensions: 44024
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 1431
Number of HSP's that attempted gapping in prelim test: 23382
Number of HSP's gapped (non-prelim): 10484
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)