Query 024281
Match_columns 269
No_of_seqs 302 out of 1790
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 05:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024281.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024281hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ts2_A Protein LIN-28 homolog 99.2 5.9E-12 2E-16 103.8 3.4 46 59-104 96-141 (148)
2 3pgw_S U1-70K; protein-RNA com 98.9 3.4E-08 1.2E-12 94.2 14.8 41 2-42 143-183 (437)
3 2wbr_A GW182, gawky, LD47780P; 98.8 5.2E-09 1.8E-13 78.8 5.3 38 2-39 42-79 (89)
4 3beg_B Splicing factor, argini 98.7 1.4E-08 4.8E-13 79.1 6.2 31 4-34 52-82 (115)
5 2a51_A Nucleocapsid protein; s 98.7 9.9E-09 3.4E-13 65.5 4.0 38 62-100 2-39 (39)
6 2fc8_A NCL protein; structure 98.7 1.7E-08 5.7E-13 76.3 5.8 41 3-43 54-94 (102)
7 2jvr_A Nucleolar protein 3; RN 98.7 1.5E-08 5.1E-13 79.2 5.4 40 2-41 66-105 (111)
8 2ec7_A GAG polyprotein (PR55GA 98.7 2E-08 6.9E-13 67.3 5.2 41 60-101 6-46 (49)
9 2dgu_A Heterogeneous nuclear r 98.7 5.5E-08 1.9E-12 73.8 8.1 42 2-43 44-85 (103)
10 2cpd_A Apobec-1 stimulating pr 98.7 3.6E-08 1.2E-12 74.2 6.6 42 2-43 50-91 (99)
11 2cqf_A RNA-binding protein LIN 98.7 1.4E-08 4.9E-13 71.6 3.9 42 61-102 8-49 (63)
12 4fxv_A ELAV-like protein 1; RN 98.7 1.8E-08 6.2E-13 76.6 4.7 37 3-39 61-97 (99)
13 1cl4_A Protein (GAG polyprotei 98.7 9.4E-09 3.2E-13 71.7 2.7 42 62-103 3-51 (60)
14 2dnz_A Probable RNA-binding pr 98.7 4.9E-08 1.7E-12 72.6 6.9 42 2-43 46-87 (95)
15 2dgt_A RNA-binding protein 30; 98.6 5.3E-08 1.8E-12 72.3 6.9 42 2-43 43-84 (92)
16 2xnq_A Nuclear polyadenylated 98.6 3E-08 1E-12 74.9 5.6 40 2-41 56-95 (97)
17 1x4a_A Splicing factor, argini 98.6 4.3E-08 1.5E-12 75.1 6.5 41 3-43 61-101 (109)
18 2bl6_A Nucleocapsid protein P1 98.6 1.8E-08 6.2E-13 63.5 3.6 36 62-100 2-37 (37)
19 2ihx_A Nucleocapsid (NC) prote 98.6 2.4E-08 8.1E-13 70.0 4.5 44 60-103 4-51 (61)
20 2dgx_A KIAA0430 protein; RRM d 98.6 4.3E-08 1.5E-12 73.7 6.3 40 3-42 52-91 (96)
21 2li8_A Protein LIN-28 homolog 98.6 2.6E-08 9E-13 72.5 4.8 42 60-101 24-65 (74)
22 1h2v_Z 20 kDa nuclear CAP bind 98.6 3.6E-08 1.2E-12 80.4 5.8 41 3-43 81-121 (156)
23 3s8s_A Histone-lysine N-methyl 98.6 2.9E-08 9.9E-13 77.0 4.9 39 2-40 47-85 (110)
24 2cpi_A CCR4-NOT transcription 98.6 3.3E-08 1.1E-12 76.3 5.2 40 3-42 63-102 (111)
25 2fc9_A NCL protein; structure 98.6 6.7E-08 2.3E-12 72.8 6.8 42 2-43 52-93 (101)
26 2fy1_A RNA-binding motif prote 98.6 8.7E-08 3E-12 74.7 7.6 42 2-43 47-88 (116)
27 1fjc_A Nucleolin RBD2, protein 98.6 4.1E-08 1.4E-12 73.3 5.3 41 3-43 53-93 (96)
28 1x5t_A Splicing factor 3B subu 98.6 7.4E-08 2.5E-12 71.8 6.6 42 2-43 47-88 (96)
29 2cqh_A IGF-II mRNA-binding pro 98.6 6E-08 2E-12 72.0 6.1 41 2-42 43-84 (93)
30 2dnp_A RNA-binding protein 14; 98.6 7.3E-08 2.5E-12 71.2 6.4 41 2-42 42-82 (90)
31 2dnq_A RNA-binding protein 4B; 98.6 7.3E-08 2.5E-12 71.2 6.3 42 2-43 41-82 (90)
32 3mdf_A Peptidyl-prolyl CIS-tra 98.6 5.7E-08 1.9E-12 70.7 5.4 38 2-39 48-85 (85)
33 3bs9_A Nucleolysin TIA-1 isofo 98.6 4.6E-08 1.6E-12 71.5 4.8 39 3-41 48-86 (87)
34 1x4c_A Splicing factor, argini 98.6 1.2E-07 4E-12 72.8 7.3 40 4-43 51-95 (108)
35 2kvi_A Nuclear polyadenylated 98.6 3.8E-08 1.3E-12 73.8 4.4 42 2-43 44-85 (96)
36 1u6f_A Tcubp1, RNA-binding pro 98.6 1E-07 3.5E-12 76.0 7.1 41 3-43 84-124 (139)
37 3ex7_B RNA-binding protein 8A; 98.6 5.3E-08 1.8E-12 76.4 5.3 40 3-42 64-103 (126)
38 2e5j_A Methenyltetrahydrofolat 98.6 5.4E-08 1.8E-12 73.0 5.1 40 2-41 55-94 (97)
39 1x5s_A Cold-inducible RNA-bind 98.6 9.2E-08 3.1E-12 72.1 6.4 42 2-43 53-94 (102)
40 2cqb_A Peptidyl-prolyl CIS-tra 98.6 9.7E-08 3.3E-12 72.0 6.5 42 2-43 53-94 (102)
41 1a1t_A Nucleocapsid protein; s 98.6 4.2E-08 1.4E-12 67.2 4.0 42 60-102 12-53 (55)
42 2cqp_A RNA-binding protein 12; 98.6 6.2E-08 2.1E-12 72.6 5.3 39 3-41 57-95 (98)
43 1why_A Hypothetical protein ri 98.6 7.8E-08 2.7E-12 72.1 5.8 41 3-43 53-95 (97)
44 2hvz_A Splicing factor, argini 98.6 1.2E-07 3.9E-12 71.6 6.7 42 2-43 36-77 (101)
45 2e5h_A Zinc finger CCHC-type a 98.6 6.7E-08 2.3E-12 71.7 5.2 37 3-39 58-94 (94)
46 2a3j_A U1 small nuclear ribonu 98.6 5.6E-08 1.9E-12 77.6 5.1 40 2-41 71-110 (127)
47 2lkz_A RNA-binding protein 5; 98.6 5E-08 1.7E-12 74.0 4.4 39 2-40 52-94 (95)
48 2cpe_A RNA-binding protein EWS 98.6 1E-07 3.5E-12 73.3 6.3 41 3-43 65-105 (113)
49 2cqi_A Nucleolysin TIAR; RNA r 98.6 1.5E-07 5.1E-12 71.2 7.1 40 3-42 55-94 (103)
50 3md1_A Nuclear and cytoplasmic 98.6 7.9E-08 2.7E-12 69.6 5.3 39 3-41 43-81 (83)
51 1wg1_A KIAA1579 protein, homol 98.5 5.9E-08 2E-12 71.6 4.7 40 2-41 39-78 (88)
52 2do4_A Squamous cell carcinoma 98.5 8.2E-08 2.8E-12 72.2 5.5 40 3-42 58-97 (100)
53 1x5p_A Negative elongation fac 98.5 1E-07 3.5E-12 71.5 6.0 41 2-42 48-88 (97)
54 4f25_A Polyadenylate-binding p 98.5 7E-08 2.4E-12 75.0 5.1 39 3-41 45-83 (115)
55 1whw_A Hypothetical protein ri 98.5 2E-07 6.9E-12 69.8 7.3 41 2-42 49-89 (99)
56 1x5u_A Splicing factor 3B subu 98.5 1.2E-07 4.3E-12 71.8 6.2 42 2-43 56-97 (105)
57 1wi8_A EIF-4B, eukaryotic tran 98.5 1.4E-07 4.6E-12 71.6 6.3 40 3-43 57-96 (104)
58 4a8x_A RNA-binding protein wit 98.5 1.2E-07 4.2E-12 69.2 5.9 39 2-40 46-84 (88)
59 2cq0_A Eukaryotic translation 98.5 1.2E-07 4.1E-12 71.7 6.0 41 3-43 57-97 (103)
60 2cpx_A Hypothetical protein FL 98.5 1.4E-07 4.6E-12 72.7 6.3 41 2-42 66-106 (115)
61 2dnm_A SRP46 splicing factor; 98.5 1E-07 3.5E-12 72.1 5.5 41 2-42 54-94 (103)
62 2x1f_A MRNA 3'-END-processing 98.5 1.1E-07 3.8E-12 71.0 5.7 39 3-41 44-82 (96)
63 2cqc_A Arginine/serine-rich sp 98.5 8.2E-08 2.8E-12 71.3 4.7 38 3-40 57-94 (95)
64 2la6_A RNA-binding protein FUS 98.5 6.5E-08 2.2E-12 72.8 4.2 37 3-39 63-99 (99)
65 3ns6_A Eukaryotic translation 98.5 8.5E-08 2.9E-12 72.7 4.8 39 2-40 53-92 (100)
66 2cq3_A RNA-binding protein 9; 98.5 2E-07 6.9E-12 70.4 6.9 41 3-43 55-95 (103)
67 2dgo_A Cytotoxic granule-assoc 98.5 2.6E-07 8.8E-12 71.2 7.6 41 3-43 57-97 (115)
68 2pe8_A Splicing factor 45; RRM 98.5 9.6E-08 3.3E-12 73.7 5.1 38 3-40 56-93 (105)
69 1fj7_A Nucleolin RBD1, protein 98.5 1.1E-07 3.7E-12 71.7 5.2 40 2-42 57-96 (101)
70 2d9p_A Polyadenylate-binding p 98.5 1.6E-07 5.5E-12 71.0 6.1 40 3-42 55-94 (103)
71 2dit_A HIV TAT specific factor 98.5 1.2E-07 4.3E-12 73.2 5.5 41 2-42 63-103 (112)
72 2diu_A KIAA0430 protein; struc 98.5 8.3E-08 2.8E-12 73.1 4.4 39 4-42 47-85 (96)
73 2dgw_A Probable RNA-binding pr 98.5 1.3E-07 4.3E-12 70.0 5.3 39 3-42 50-88 (91)
74 2cpf_A RNA binding motif prote 98.5 1.6E-07 5.3E-12 70.3 5.8 41 3-43 50-90 (98)
75 2dgv_A HnRNP M, heterogeneous 98.5 9E-08 3.1E-12 70.7 4.3 40 3-42 48-87 (92)
76 2lxi_A RNA-binding protein 10; 98.5 1E-07 3.4E-12 71.2 4.6 42 2-43 43-85 (91)
77 3p5t_L Cleavage and polyadenyl 98.5 3.1E-08 1.1E-12 73.4 1.7 39 3-41 45-83 (90)
78 1jmt_A Splicing factor U2AF 35 98.5 8.7E-08 3E-12 73.7 4.2 36 3-38 68-103 (104)
79 2ek1_A RNA-binding protein 12; 98.5 9.5E-08 3.3E-12 71.0 4.3 37 3-39 57-93 (95)
80 1x4g_A Nucleolysin TIAR; struc 98.5 1.5E-07 5.1E-12 72.1 5.5 41 3-43 61-101 (109)
81 1whx_A Hypothetical protein ri 98.5 1.2E-07 4E-12 73.4 5.0 40 2-41 45-84 (111)
82 2dng_A Eukaryotic translation 98.5 1.6E-07 5.5E-12 71.1 5.6 40 3-43 56-95 (103)
83 2ywk_A Putative RNA-binding pr 98.5 9.7E-08 3.3E-12 71.0 4.3 38 3-40 57-94 (95)
84 1wf1_A RNA-binding protein RAL 98.5 1.5E-07 5.2E-12 72.1 5.5 40 2-41 61-100 (110)
85 2cph_A RNA binding motif prote 98.5 2.8E-07 9.7E-12 69.9 7.0 41 2-42 57-98 (107)
86 1nu4_A U1A RNA binding domain; 98.5 1.7E-07 5.8E-12 69.9 5.6 39 3-41 51-89 (97)
87 3v4m_A Splicing factor U2AF 65 98.5 1.5E-07 5.2E-12 72.5 5.4 37 3-39 59-95 (105)
88 3ulh_A THO complex subunit 4; 98.5 1.3E-07 4.4E-12 71.9 4.9 37 3-39 70-106 (107)
89 2ytc_A PRE-mRNA-splicing facto 98.5 1.1E-07 3.8E-12 69.2 4.2 37 3-39 48-85 (85)
90 2jvo_A Nucleolar protein 3; nu 98.5 1.4E-07 4.9E-12 72.6 4.9 40 3-42 65-104 (108)
91 2err_A Ataxin-2-binding protei 98.5 1.4E-07 4.9E-12 72.5 4.9 38 3-40 69-106 (109)
92 2cpz_A CUG triplet repeat RNA- 98.5 1.2E-07 4.2E-12 73.2 4.5 40 3-42 67-106 (115)
93 2cq2_A Hypothetical protein LO 98.5 1.6E-07 5.3E-12 73.9 5.1 40 3-42 63-107 (114)
94 2cpj_A Non-POU domain-containi 98.5 1.4E-07 4.6E-12 71.0 4.6 40 3-42 51-90 (99)
95 2nlw_A Eukaryotic translation 98.5 1.4E-07 4.9E-12 72.0 4.7 40 2-41 60-100 (105)
96 1oo0_B CG8781-PA, drosophila Y 98.4 2E-07 6.9E-12 71.3 5.4 39 3-41 68-106 (110)
97 2div_A TRNA selenocysteine ass 98.4 1.3E-07 4.4E-12 70.9 4.1 40 3-42 52-95 (99)
98 1p27_B RNA-binding protein 8A; 98.4 1.4E-07 4.7E-12 71.6 4.3 39 3-41 65-103 (106)
99 3s6e_A RNA-binding protein 39; 98.4 1.8E-07 6.1E-12 73.4 4.8 37 3-39 55-91 (114)
100 1x4d_A Matrin 3; structural ge 98.4 1.5E-07 5.1E-12 72.4 4.2 39 3-41 52-92 (102)
101 2bz2_A Negative elongation fac 98.4 2.2E-07 7.6E-12 73.2 5.3 41 2-42 72-112 (121)
102 2dgs_A DAZ-associated protein 98.4 4.9E-07 1.7E-11 67.8 6.8 40 2-42 51-90 (99)
103 2la4_A Nuclear and cytoplasmic 98.4 1.1E-07 3.9E-12 71.6 3.3 39 2-40 62-100 (101)
104 2j76_E EIF-4B, EIF4B, eukaryot 98.4 1.6E-07 5.4E-12 71.0 4.0 39 2-41 60-98 (100)
105 2dgp_A Bruno-like 4, RNA bindi 98.4 5.2E-07 1.8E-11 68.4 6.8 42 2-43 54-98 (106)
106 3n9u_C Cleavage and polyadenyl 98.4 2E-07 6.9E-12 76.7 4.6 37 3-39 99-135 (156)
107 1x4h_A RNA-binding protein 28; 98.4 5.8E-07 2E-11 68.6 7.0 41 2-42 56-102 (111)
108 2kxn_B Transformer-2 protein h 98.4 2E-07 6.8E-12 74.2 4.4 40 2-41 87-126 (129)
109 2do0_A HnRNP M, heterogeneous 98.4 8E-07 2.7E-11 68.2 7.7 39 3-41 56-94 (114)
110 2dnh_A Bruno-like 5, RNA bindi 98.4 3.5E-07 1.2E-11 69.2 5.6 40 3-42 56-98 (105)
111 2cqd_A RNA-binding region cont 98.4 7.3E-07 2.5E-11 68.8 7.4 39 2-41 58-96 (116)
112 1p1t_A Cleavage stimulation fa 98.4 2E-07 7E-12 70.3 4.1 39 3-41 50-88 (104)
113 1sjq_A Polypyrimidine tract-bi 98.4 1.8E-07 6.1E-12 72.5 3.7 40 3-42 52-93 (105)
114 2cq1_A PTB-like protein L; RRM 98.4 4.2E-07 1.4E-11 69.6 5.6 40 3-42 51-92 (101)
115 2kt5_A RNA and export factor-b 98.4 3.8E-07 1.3E-11 71.4 5.5 40 2-41 75-114 (124)
116 2jrs_A RNA-binding protein 39; 98.4 2.4E-07 8.3E-12 71.3 4.3 39 3-41 68-106 (108)
117 3ue2_A Poly(U)-binding-splicin 98.4 2.9E-07 9.8E-12 72.6 4.8 37 3-39 71-107 (118)
118 2dis_A Unnamed protein product 98.4 3.2E-07 1.1E-11 69.9 4.8 41 2-42 51-93 (109)
119 2dhg_A TRNA selenocysteine ass 98.4 3E-07 1E-11 69.5 4.5 41 2-42 50-91 (104)
120 3r27_A HnRNP L, heterogeneous 98.4 3E-07 1E-11 70.6 4.4 39 2-40 56-96 (100)
121 2lcw_A RNA-binding protein FUS 97.7 4.9E-08 1.7E-12 75.7 0.0 41 3-43 57-97 (116)
122 3ucg_A Polyadenylate-binding p 98.4 3.5E-07 1.2E-11 67.0 4.6 38 3-41 48-85 (89)
123 1sjr_A Polypyrimidine tract-bi 98.4 3.8E-07 1.3E-11 76.1 5.4 39 3-41 84-124 (164)
124 2cq4_A RNA binding motif prote 98.4 3E-07 1E-11 70.9 4.4 38 2-40 66-103 (114)
125 2e5i_A Heterogeneous nuclear r 98.3 4.8E-07 1.6E-11 72.1 5.4 39 3-41 61-102 (124)
126 3zzy_A Polypyrimidine tract-bi 98.3 4.7E-07 1.6E-11 72.8 5.4 39 3-41 65-106 (130)
127 1wez_A HnRNP H', FTP-3, hetero 98.3 3.8E-07 1.3E-11 69.5 4.7 41 2-43 54-94 (102)
128 1x4f_A Matrin 3; structural ge 98.3 4.9E-07 1.7E-11 70.8 5.2 40 2-41 61-102 (112)
129 3egn_A RNA-binding protein 40; 98.3 3.8E-07 1.3E-11 73.2 4.7 40 2-41 91-130 (143)
130 1wel_A RNA-binding protein 12; 98.3 2E-07 7E-12 73.1 3.0 36 3-39 67-102 (124)
131 3lqv_A PRE-mRNA branch site pr 98.3 4.5E-07 1.5E-11 69.8 4.8 38 3-40 47-84 (115)
132 2krb_A Eukaryotic translation 98.3 1.9E-07 6.6E-12 67.6 2.5 34 2-35 46-80 (81)
133 2jwn_A Embryonic polyadenylate 98.3 6.5E-07 2.2E-11 69.9 5.6 40 3-43 78-117 (124)
134 1wex_A Hypothetical protein (r 98.3 3.9E-07 1.3E-11 70.1 3.9 40 3-42 51-92 (104)
135 2hzc_A Splicing factor U2AF 65 98.3 5.3E-07 1.8E-11 65.7 4.5 34 3-37 53-86 (87)
136 2dnn_A RNA-binding protein 12; 98.3 6.6E-07 2.2E-11 69.4 5.1 37 2-39 55-91 (109)
137 2ad9_A Polypyrimidine tract-bi 98.3 4.6E-07 1.6E-11 71.7 4.3 40 3-42 67-108 (119)
138 2mss_A Protein (musashi1); RNA 98.3 4.1E-07 1.4E-11 64.6 3.5 36 2-38 40-75 (75)
139 2db1_A Heterogeneous nuclear r 98.3 5.3E-07 1.8E-11 70.4 3.8 36 3-39 61-96 (118)
140 2lea_A Serine/arginine-rich sp 98.3 4.9E-07 1.7E-11 72.4 3.7 41 2-42 88-128 (135)
141 2ki2_A SS-DNA binding protein 98.3 4.6E-07 1.6E-11 66.7 3.2 38 3-41 43-80 (90)
142 1x4b_A Heterogeneous nuclear r 98.2 1.2E-06 4E-11 67.7 5.6 41 2-43 68-108 (116)
143 2m2b_A RNA-binding protein 10; 98.2 3.5E-07 1.2E-11 72.5 2.6 40 2-42 66-109 (131)
144 3tyt_A Heterogeneous nuclear r 98.2 9.4E-07 3.2E-11 75.6 5.2 39 2-40 41-79 (205)
145 4f02_A Polyadenylate-binding p 98.2 7.8E-07 2.7E-11 75.9 4.7 38 3-40 143-180 (213)
146 3q2s_C Cleavage and polyadenyl 98.2 4.3E-07 1.5E-11 79.3 2.9 38 2-39 111-148 (229)
147 1s79_A Lupus LA protein; RRM, 98.2 6.7E-07 2.3E-11 68.5 3.6 38 2-40 51-88 (103)
148 1x4e_A RNA binding motif, sing 98.2 1.9E-07 6.4E-12 68.0 0.0 37 3-39 47-83 (85)
149 2cpy_A RNA-binding protein 12; 98.2 9.5E-07 3.3E-11 68.3 4.0 38 2-40 56-93 (114)
150 1uaw_A Mouse-musashi-1; RNP-ty 98.2 9.1E-07 3.1E-11 62.9 3.2 36 2-38 41-76 (77)
151 2hgl_A HNRPF protein, heteroge 98.2 8.5E-07 2.9E-11 71.5 3.2 36 3-39 88-123 (136)
152 2lmi_A GRSF-1, G-rich sequence 98.2 8.2E-07 2.8E-11 67.9 3.0 37 2-39 54-90 (107)
153 2d9o_A DNAJ (HSP40) homolog, s 98.2 1.8E-06 6.1E-11 66.1 4.7 40 2-43 53-92 (100)
154 1x5o_A RNA binding motif, sing 98.1 1.8E-06 6.1E-11 66.3 4.3 37 3-39 66-110 (114)
155 2dh8_A DAZ-associated protein 98.1 1.4E-06 4.7E-11 66.0 3.5 39 3-42 58-96 (105)
156 2e44_A Insulin-like growth fac 98.1 3E-06 1E-10 62.9 5.3 38 4-41 55-92 (96)
157 3s7r_A Heterogeneous nuclear r 98.1 2.2E-06 7.5E-11 62.5 4.2 35 3-38 53-87 (87)
158 2rs2_A Musashi-1, RNA-binding 98.1 3.3E-06 1.1E-10 64.8 5.4 39 2-41 66-104 (109)
159 1wg5_A Heterogeneous nuclear r 98.1 2.3E-06 7.9E-11 65.0 4.2 38 2-40 56-93 (104)
160 2hgn_A Heterogeneous nuclear r 98.1 8E-07 2.7E-11 72.0 1.4 40 2-42 85-124 (139)
161 3nyb_B Protein AIR2; polya RNA 98.0 2.1E-06 7.2E-11 63.7 3.1 42 61-102 6-66 (83)
162 2e5g_A U6 snRNA-specific termi 98.0 4.9E-06 1.7E-10 61.8 4.1 36 5-41 47-82 (94)
163 2cqg_A TDP-43, TAR DNA-binding 98.0 9.9E-06 3.4E-10 60.9 5.8 39 3-43 57-95 (103)
164 1iqt_A AUF1, heterogeneous nuc 98.0 3.2E-06 1.1E-10 59.8 2.6 36 2-38 40-75 (75)
165 1b7f_A Protein (SXL-lethal pro 98.0 8.7E-06 3E-10 65.6 5.4 39 3-41 45-83 (168)
166 3pgw_A U1-A; protein-RNA compl 97.9 8E-06 2.7E-10 72.0 5.6 40 2-41 51-90 (282)
167 1fje_B Nucleolin RBD12, protei 97.9 7.5E-06 2.6E-10 66.7 4.7 39 2-41 53-91 (175)
168 2hgm_A HNRPF protein, heteroge 97.9 4.2E-06 1.4E-10 66.7 2.9 37 2-39 83-119 (126)
169 1fxl_A Paraneoplastic encephal 97.9 8.3E-06 2.9E-10 65.3 4.7 39 3-41 44-82 (167)
170 2yh0_A Splicing factor U2AF 65 97.9 8.5E-06 2.9E-10 67.5 4.1 39 2-41 50-88 (198)
171 2adc_A Polypyrimidine tract-bi 97.8 1.1E-05 3.9E-10 69.4 4.6 39 3-41 72-110 (229)
172 3md3_A Nuclear and cytoplasmic 97.8 1.5E-05 5.3E-10 63.7 5.1 39 3-41 41-79 (166)
173 2g4b_A Splicing factor U2AF 65 97.8 1.3E-05 4.5E-10 64.9 4.3 39 2-41 50-88 (172)
174 2dha_A FLJ20171 protein; RRM d 97.8 5.3E-06 1.8E-10 65.7 1.9 36 3-39 68-103 (123)
175 2lli_A Protein AIR2; RNA surve 97.8 1.5E-05 5.2E-10 63.0 4.5 40 61-100 65-123 (124)
176 1qm9_A Polypyrimidine tract-bi 97.8 1.1E-05 3.7E-10 67.3 3.5 39 3-41 41-79 (198)
177 2qfj_A FBP-interacting repress 97.8 2.1E-05 7E-10 66.0 4.8 39 2-40 69-107 (216)
178 2lli_A Protein AIR2; RNA surve 97.8 2.1E-05 7.1E-10 62.3 4.4 41 61-101 43-83 (124)
179 2dnr_A Synaptojanin-1; RRM dom 97.7 2.1E-05 7.3E-10 59.2 4.1 38 3-41 49-86 (91)
180 3smz_A Protein raver-1, ribonu 97.7 2E-05 7E-10 69.4 4.7 39 3-41 226-264 (284)
181 2xs2_A Deleted in azoospermia- 97.7 1.1E-05 3.6E-10 60.7 2.0 38 2-41 49-86 (102)
182 3sde_A Paraspeckle component 1 97.6 4E-05 1.4E-09 67.3 5.0 38 3-40 58-95 (261)
183 4f02_A Polyadenylate-binding p 97.6 4.3E-05 1.5E-09 65.0 4.7 39 3-41 57-95 (213)
184 3tht_A Alkylated DNA repair pr 97.6 5E-05 1.7E-09 70.3 5.4 38 2-39 55-97 (345)
185 1a6b_B Momulv, zinc finger pro 97.6 5.8E-05 2E-09 48.2 4.0 25 56-80 6-30 (40)
186 2dnl_A Cytoplasmic polyadenyla 97.6 4.8E-05 1.7E-09 58.5 3.9 35 3-39 52-86 (114)
187 2j8a_A Histone-lysine N-methyl 97.5 3.8E-05 1.3E-09 61.7 3.0 39 2-40 47-95 (136)
188 2ghp_A U4/U6 snRNA-associated 97.5 7.2E-05 2.5E-09 66.1 5.0 40 2-41 158-197 (292)
189 3smz_A Protein raver-1, ribonu 97.5 7.2E-05 2.5E-09 65.8 4.7 39 3-41 137-175 (284)
190 3d2w_A TAR DNA-binding protein 97.5 0.00014 4.8E-09 53.6 5.1 35 2-40 47-83 (89)
191 1l3k_A Heterogeneous nuclear r 97.4 9.2E-05 3.1E-09 61.0 4.3 38 3-41 55-92 (196)
192 1ufw_A Synaptojanin 2; RNP dom 97.4 0.0001 3.4E-09 55.9 3.5 34 5-39 60-93 (95)
193 3nyb_B Protein AIR2; polya RNA 97.4 0.0001 3.4E-09 54.6 3.2 19 83-101 6-24 (83)
194 1wf0_A TDP-43, TAR DNA-binding 97.4 9.6E-05 3.3E-09 53.8 3.0 36 3-42 42-79 (88)
195 3nmr_A Cugbp ELAV-like family 97.3 0.0002 6.7E-09 57.7 4.4 39 3-41 47-88 (175)
196 1dsq_A Nucleic acid binding pr 97.3 0.00013 4.6E-09 42.0 2.2 19 61-79 3-21 (26)
197 1u6p_A GAG polyprotein; MLV, A 97.2 0.00022 7.7E-09 48.8 3.3 26 55-80 18-43 (56)
198 2ghp_A U4/U6 snRNA-associated 97.2 0.00026 8.8E-09 62.5 4.5 36 3-39 81-116 (292)
199 2li8_A Protein LIN-28 homolog 97.1 0.00044 1.5E-08 50.0 4.1 41 69-109 2-51 (74)
200 1nc8_A Nucleocapsid protein; H 97.1 0.00036 1.2E-08 41.2 2.8 20 60-79 6-25 (29)
201 3sde_A Paraspeckle component 1 97.1 0.00038 1.3E-08 61.0 4.0 39 3-41 137-179 (261)
202 2cjk_A Nuclear polyadenylated 96.9 0.00063 2.2E-08 54.4 3.6 36 2-39 44-79 (167)
203 3u1l_A PRE-mRNA-splicing facto 96.8 0.00083 2.8E-08 59.1 3.7 27 2-28 178-204 (240)
204 1a6b_B Momulv, zinc finger pro 96.6 0.0016 5.4E-08 41.5 3.0 25 82-106 10-34 (40)
205 2ysa_A Retinoblastoma-binding 96.4 0.0015 5E-08 44.5 2.5 21 59-79 6-26 (55)
206 1u6p_A GAG polyprotein; MLV, A 96.3 0.0022 7.6E-08 43.8 2.5 25 81-105 22-46 (56)
207 1dsq_A Nucleic acid binding pr 96.2 0.002 6.9E-08 37.0 1.7 20 83-102 3-22 (26)
208 2i2y_A Fusion protein consists 96.2 0.0011 3.8E-08 53.0 0.7 38 2-40 12-50 (150)
209 1owx_A Lupus LA protein, SS-B, 96.0 0.0062 2.1E-07 48.0 4.4 36 5-40 57-95 (121)
210 2l9w_A U4/U6 snRNA-associated- 95.7 0.0094 3.2E-07 46.3 4.2 36 4-39 63-98 (117)
211 1nc8_A Nucleocapsid protein; H 95.4 0.0067 2.3E-07 35.6 1.9 21 82-102 6-26 (29)
212 2kn4_A Immunoglobulin G-bindin 95.1 0.0083 2.8E-07 48.0 2.1 25 2-26 12-36 (158)
213 2ysa_A Retinoblastoma-binding 95.0 0.0089 3E-07 40.6 1.6 20 81-100 6-25 (55)
214 2cqf_A RNA-binding protein LIN 94.7 0.019 6.6E-07 39.8 2.8 30 60-90 29-58 (63)
215 1cl4_A Protein (GAG polyprotei 94.4 0.021 7.3E-07 39.0 2.5 21 60-80 30-50 (60)
216 2a51_A Nucleocapsid protein; s 94.1 0.026 9E-07 35.2 2.2 19 60-78 21-39 (39)
217 2ihx_A Nucleocapsid (NC) prote 93.8 0.027 9.2E-07 38.7 2.0 21 60-80 30-50 (61)
218 2bl6_A Nucleocapsid protein P1 93.7 0.023 7.9E-07 35.0 1.4 18 61-78 20-37 (37)
219 1wey_A Calcipressin 1; structu 93.0 0.067 2.3E-06 40.9 3.2 35 6-40 49-83 (104)
220 2ec7_A GAG polyprotein (PR55GA 93.0 0.042 1.4E-06 36.1 1.8 20 60-79 27-46 (49)
221 1a1t_A Nucleocapsid protein; s 92.4 0.053 1.8E-06 36.3 1.7 20 60-79 33-52 (55)
222 3ts2_A Protein LIN-28 homolog 89.4 0.26 8.9E-06 39.8 3.5 33 82-114 97-129 (148)
223 2g0c_A ATP-dependent RNA helic 80.0 1.1 3.8E-05 31.3 2.7 37 2-39 39-75 (76)
224 2l08_A Regulator of nonsense t 67.3 7.1 0.00024 29.2 4.4 35 5-39 55-94 (97)
225 1uw4_A UPF3X; nonsense mediate 64.2 9 0.00031 28.1 4.5 35 5-39 47-86 (91)
226 1wwh_A Nucleoporin 35, nucleop 63.7 9.6 0.00033 29.5 4.7 33 4-37 60-93 (119)
227 3p3d_A Nucleoporin 53; structu 60.6 10 0.00035 29.9 4.4 34 4-38 63-96 (132)
228 2hqh_E Restin; beta/BETA struc 44.9 5.6 0.00019 22.5 0.4 17 62-78 5-21 (26)
229 3pgw_S U1-70K; protein-RNA com 44.7 1.1E+02 0.0039 28.2 9.7 23 9-33 147-169 (437)
230 2dhx_A Poly (ADP-ribose) polym 43.3 23 0.00079 26.7 3.7 34 4-38 48-81 (104)
231 3lpe_A Putative transcription 41.4 18 0.00062 26.3 2.8 23 3-25 50-72 (92)
232 1rk8_A CG8781-PA, CG8781-PA pr 37.2 7.1 0.00024 30.9 0.0 31 8-38 11-43 (165)
233 3h7h_B Transcription elongatio 33.8 25 0.00086 26.4 2.6 26 2-27 50-75 (106)
234 2ytv_A Cold shock domain-conta 30.0 17 0.00059 25.8 1.0 13 1-13 16-28 (79)
235 2pzo_E CAP-Gly domain-containi 29.3 14 0.00047 23.2 0.4 18 61-78 21-38 (42)
236 2kcm_A Cold shock domain famil 25.5 17 0.00058 25.5 0.3 38 2-39 11-53 (74)
237 3a43_A HYPD, hydrogenase nicke 24.5 38 0.0013 26.5 2.2 44 9-71 37-81 (139)
238 1whv_A Poly(A)-specific ribonu 24.1 53 0.0018 24.5 2.8 20 5-24 51-70 (100)
239 3p8b_B Transcription antitermi 23.5 51 0.0017 25.8 2.9 24 3-26 43-66 (152)
240 2lea_A Serine/arginine-rich sp 23.3 17 0.00059 27.8 0.0 27 4-30 2-31 (135)
No 1
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=99.20 E-value=5.9e-12 Score=103.75 Aligned_cols=46 Identities=33% Similarity=0.726 Sum_probs=40.4
Q ss_pred CCCCcccCCCCCCCCCcccCCCCCcccccCCCCCcccccCCCCCCC
Q 024281 59 GSGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSPKK 104 (269)
Q Consensus 59 ~~~rc~~cG~~GH~ardC~~~~~k~~CyrCG~~Gh~~r~c~~~~r~ 104 (269)
....||+||..|||+++|+.......||.|++.||++++|+..+..
T Consensus 96 ~~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~~r~Cp~~~~~ 141 (148)
T 3ts2_A 96 GGDRCYNCGGLDHHAKECKLPPQPKKCHFCQSINHMVASCPLKAQQ 141 (148)
T ss_dssp CSCCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSSCCGGGCTTTTC-
T ss_pred CCCcccEeCCccchhhhCCCCCCCCcccccCCcCCEeccCcCCCCC
Confidence 3568999999999999999977778999999999999999986543
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.86 E-value=3.4e-08 Score=94.22 Aligned_cols=41 Identities=34% Similarity=0.737 Sum_probs=38.2
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||.+|||++|+|+.|.|+|+....
T Consensus 143 ~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 143 PRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred ccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 47999999999999999999999999999999999998643
No 3
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.80 E-value=5.2e-09 Score=78.80 Aligned_cols=38 Identities=18% Similarity=0.352 Sum_probs=36.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
.+|||||+|.+.++|+.||+.||+.+|.|+.|.|.+|.
T Consensus 42 ~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 42 NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 58999999999999999999999999999999999984
No 4
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.73 E-value=1.4e-08 Score=79.10 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=29.3
Q ss_pred CeEEEEECCHHHHHHHHHHhCCCeecCceEE
Q 024281 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRII 34 (269)
Q Consensus 4 GfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~ 34 (269)
|||||+|++.++|+.||++|||++|+|+.|.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~ 82 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGE 82 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEee
Confidence 8999999999999999999999999999833
No 5
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=98.72 E-value=9.9e-09 Score=65.49 Aligned_cols=38 Identities=39% Similarity=0.970 Sum_probs=34.4
Q ss_pred CcccCCCCCCCCCcccCCCCCcccccCCCCCcccccCCC
Q 024281 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 100 (269)
Q Consensus 62 rc~~cG~~GH~ardC~~~~~k~~CyrCG~~Gh~~r~c~~ 100 (269)
.||+||..||++.+|+.. ....||.|++.||++++|++
T Consensus 2 ~C~~Cg~~GH~a~~C~~~-~~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 2 TCFNCGKPGHTARMCRQP-RQEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp BCTTTCCBSSCTTTCCSC-CCSSCTTTCCSSSCTTTSCC
T ss_pred eeeccCCCCcccccCCCC-CCCccccCCCCCCccCcCcC
Confidence 699999999999999986 35789999999999999974
No 6
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.71 E-value=1.7e-08 Score=76.26 Aligned_cols=41 Identities=24% Similarity=0.633 Sum_probs=38.1
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||+.|+|.+|+|+.|.|++++....
T Consensus 54 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 54 KGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred CcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 58999999999999999999999999999999999986544
No 7
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.70 E-value=1.5e-08 Score=79.17 Aligned_cols=40 Identities=25% Similarity=0.155 Sum_probs=37.1
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||++|||.+|+|+.|.|+++...
T Consensus 66 ~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 66 FDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp SSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC-
T ss_pred CCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4799999999999999999999999999999999998754
No 8
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=98.70 E-value=2e-08 Score=67.28 Aligned_cols=41 Identities=41% Similarity=1.091 Sum_probs=36.6
Q ss_pred CCCcccCCCCCCCCCcccCCCCCcccccCCCCCcccccCCCC
Q 024281 60 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~~~k~~CyrCG~~Gh~~r~c~~~ 101 (269)
...||+||..|||+.+|+... ...||.|++.||++++|+..
T Consensus 6 ~~~C~~Cg~~GH~a~~C~~~~-~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 6 VIRCWNCGKEGHSARQCRAPR-RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCBCTTTCCBTCCTTTCCCSS-CCSCSSSCCSSCCGGGCCSS
T ss_pred cCeeeecCCCCcChhhCcCCC-CCeeCcCCCcCCccCCCcCC
Confidence 468999999999999999863 56899999999999999874
No 9
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.68 E-value=5.5e-08 Score=73.80 Aligned_cols=42 Identities=31% Similarity=0.596 Sum_probs=38.6
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||+.|+|.+|+|+.|.|+++.....
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 478999999999999999999999999999999999986543
No 10
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=3.6e-08 Score=74.22 Aligned_cols=42 Identities=45% Similarity=0.639 Sum_probs=38.8
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||..|||..|+|+.|.|++++....
T Consensus 50 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpd_A 50 IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDK 91 (99)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCCC
T ss_pred eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCC
Confidence 579999999999999999999999999999999999986543
No 11
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.4e-08 Score=71.59 Aligned_cols=42 Identities=33% Similarity=0.716 Sum_probs=38.2
Q ss_pred CCcccCCCCCCCCCcccCCCCCcccccCCCCCcccccCCCCC
Q 024281 61 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 102 (269)
Q Consensus 61 ~rc~~cG~~GH~ardC~~~~~k~~CyrCG~~Gh~~r~c~~~~ 102 (269)
..||+||..|||+++|+.......||.|++.||++++|+...
T Consensus 8 ~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~~ 49 (63)
T 2cqf_A 8 DRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKA 49 (63)
T ss_dssp CCCSSSCCSSSCTTTCCSCCCSSCCTTTCCSSSCTTTCTGGG
T ss_pred CcccccCCCCcChhhCCCCCCCCccCCcCCcCCccCcCCCcc
Confidence 579999999999999998766789999999999999999754
No 12
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=98.66 E-value=1.8e-08 Score=76.62 Aligned_cols=37 Identities=32% Similarity=0.578 Sum_probs=35.7
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||++|||.+|+|+.|.|+||+
T Consensus 61 kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 61 LGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 5899999999999999999999999999999999986
No 13
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=98.66 E-value=9.4e-09 Score=71.70 Aligned_cols=42 Identities=31% Similarity=0.844 Sum_probs=19.7
Q ss_pred CcccCCCCCCCCCcccCCC-------CCcccccCCCCCcccccCCCCCC
Q 024281 62 RCFNCGIDGHWARDCKAGD-------WKNKCYRCGERGHIERNCQNSPK 103 (269)
Q Consensus 62 rc~~cG~~GH~ardC~~~~-------~k~~CyrCG~~Gh~~r~c~~~~r 103 (269)
.||+||..|||+++|+... ....||.|++.||++++|+....
T Consensus 3 ~Cf~Cg~~GH~a~~C~~~~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~~ 51 (60)
T 1cl4_A 3 SCFKCGKKGHFAKNCHEHAHNNAEPKVPGLCPRCKRGKHWANECKSKTD 51 (60)
T ss_dssp --------------------------CCCSCSSCSSCSSCSTTCCCTTS
T ss_pred ccccCCCCCcCHhhCcCCCCCccccCCCcceeECCCCCCccCcCCCccc
Confidence 6999999999999999764 35789999999999999998653
No 14
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.65 E-value=4.9e-08 Score=72.61 Aligned_cols=42 Identities=26% Similarity=0.386 Sum_probs=38.7
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||..|||..|+|+.|.|+++.....
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 87 (95)
T 2dnz_A 46 SKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLD 87 (95)
T ss_dssp CCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcccccC
Confidence 368999999999999999999999999999999999986544
No 15
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=5.3e-08 Score=72.30 Aligned_cols=42 Identities=29% Similarity=0.503 Sum_probs=38.7
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.++||||+|.+.++|+.||..|||.+|+|+.|.|+++.....
T Consensus 43 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 43 VKDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CSSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 468999999999999999999999999999999999986544
No 16
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.65 E-value=3e-08 Score=74.91 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=37.7
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|++++..
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 4799999999999999999999999999999999998754
No 17
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=4.3e-08 Score=75.07 Aligned_cols=41 Identities=59% Similarity=0.943 Sum_probs=38.3
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||+.||+.+|+|+.|.|+++.....
T Consensus 61 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 61 PPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCCC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCCC
Confidence 68999999999999999999999999999999999986544
No 18
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=98.65 E-value=1.8e-08 Score=63.51 Aligned_cols=36 Identities=36% Similarity=1.155 Sum_probs=33.3
Q ss_pred CcccCCCCCCCCCcccCCCCCcccccCCCCCcccccCCC
Q 024281 62 RCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQN 100 (269)
Q Consensus 62 rc~~cG~~GH~ardC~~~~~k~~CyrCG~~Gh~~r~c~~ 100 (269)
.||+||..||++.+|+.. ..||.|++.||++++|++
T Consensus 2 ~C~~Cg~~GH~~~~C~~~---~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 2 TCYNCGKPGHLSSQCRAP---KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp CBSSSCCSSCCTTTSSCB---TTCSSCCCTTGGGGTTCC
T ss_pred cccccCCCCcchhhCcCc---CeEccCCCcCCccCcCcC
Confidence 699999999999999985 589999999999999974
No 19
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=98.64 E-value=2.4e-08 Score=69.97 Aligned_cols=44 Identities=27% Similarity=0.815 Sum_probs=37.5
Q ss_pred CCCcccCCCCCCCCCcccCCCC----CcccccCCCCCcccccCCCCCC
Q 024281 60 SGRCFNCGIDGHWARDCKAGDW----KNKCYRCGERGHIERNCQNSPK 103 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~~~----k~~CyrCG~~Gh~~r~c~~~~r 103 (269)
...||+|+..|||+++|+.... ...||.|++.||++++|+....
T Consensus 4 ~~~C~~Cg~~GH~a~~C~~~~~~~~~~~~C~~Cg~~GH~ar~C~~~~~ 51 (61)
T 2ihx_A 4 RGLCYTCGSPGHYQAQCPKKRKSGNSRERCQLCNGMGHNAKQCRKRDG 51 (61)
T ss_dssp TTBCSSSCCBTCCGGGCTTTTSSSCCCSBCTTTCCBSSCGGGCCCCC-
T ss_pred CCcccccCCCCeehhhCcCCcCCCCCCCeeCCCCCCCCCcCCCcCCCc
Confidence 4679999999999999998643 3579999999999999998543
No 20
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=4.3e-08 Score=73.65 Aligned_cols=40 Identities=28% Similarity=0.343 Sum_probs=37.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||+.|||.+|+|+.|.|++++...
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 7899999999999999999999999999999999997543
No 21
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=98.64 E-value=2.6e-08 Score=72.48 Aligned_cols=42 Identities=33% Similarity=0.717 Sum_probs=38.1
Q ss_pred CCCcccCCCCCCCCCcccCCCCCcccccCCCCCcccccCCCC
Q 024281 60 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~~~k~~CyrCG~~Gh~~r~c~~~ 101 (269)
...||+||..|||+.+|+.......||.|++.||++++|+..
T Consensus 24 ~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~GH~ar~Cp~~ 65 (74)
T 2li8_A 24 GDRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLK 65 (74)
T ss_dssp TSCCTTTCCSSSCTTTCSSCCCCCCCTTTCCTTSCGGGCTTG
T ss_pred CCcccccCCcCcCcccCCCCCCCCccCCcCCcCCccCcCcCC
Confidence 467999999999999999876678999999999999999874
No 22
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.62 E-value=3.6e-08 Score=80.40 Aligned_cols=41 Identities=29% Similarity=0.452 Sum_probs=38.0
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||+.|++.+|+|+.|.|+|+.....
T Consensus 81 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 121 (156)
T 1h2v_Z 81 CGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKE 121 (156)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCCT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 58999999999999999999999999999999999986543
No 23
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.62 E-value=2.9e-08 Score=77.04 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|++.++|+.||++|||.+|+|+.|.|+++..
T Consensus 47 ~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~ 85 (110)
T 3s8s_A 47 HLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIK 85 (110)
T ss_dssp EEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECST
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 368999999999999999999999999999999999864
No 24
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.62 E-value=3.3e-08 Score=76.31 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=37.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||+.|||.+|+|+.|.|+++....
T Consensus 63 ~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 63 SASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp CEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred CeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 4899999999999999999999999999999999998654
No 25
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.62 E-value=6.7e-08 Score=72.85 Aligned_cols=42 Identities=31% Similarity=0.510 Sum_probs=38.7
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 52 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (101)
T 2fc9_A 52 SKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRGS 93 (101)
T ss_dssp BCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCCC
T ss_pred EeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCCC
Confidence 379999999999999999999999999999999999986543
No 26
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.62 E-value=8.7e-08 Score=74.74 Aligned_cols=42 Identities=38% Similarity=0.646 Sum_probs=38.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||+.|+|..|+|+.|.|++++....
T Consensus 47 ~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 88 (116)
T 2fy1_A 47 SRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKPSF 88 (116)
T ss_dssp CCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCSSC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCCC
Confidence 369999999999999999999999999999999999986543
No 27
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.61 E-value=4.1e-08 Score=73.28 Aligned_cols=41 Identities=20% Similarity=0.421 Sum_probs=38.0
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 53 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 93 (96)
T 1fjc_A 53 KGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGG 93 (96)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCCC
Confidence 68999999999999999999999999999999999976543
No 28
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=7.4e-08 Score=71.76 Aligned_cols=42 Identities=24% Similarity=0.378 Sum_probs=38.4
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||+.|+|..|+|+.|.|+++.....
T Consensus 47 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 47 SKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp CCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred cCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 368999999999999999999999999999999999986543
No 29
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=6e-08 Score=72.05 Aligned_cols=41 Identities=27% Similarity=0.435 Sum_probs=38.1
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCC-CeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNG-RDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG-~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||+.||| .+|+|+.|.|+++....
T Consensus 43 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 43 KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCcc
Confidence 479999999999999999999999 99999999999998653
No 30
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.60 E-value=7.3e-08 Score=71.24 Aligned_cols=41 Identities=41% Similarity=0.667 Sum_probs=38.1
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.++||||+|.+.++|+.||..|||..|+|+.|.|+++....
T Consensus 42 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 42 VKDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp CSSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred ECCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 46899999999999999999999999999999999998654
No 31
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=7.3e-08 Score=71.22 Aligned_cols=42 Identities=26% Similarity=0.442 Sum_probs=38.7
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||+.|+|.+|+|+.|.|+++.....
T Consensus 41 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 41 IKNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp ETTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred ECCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 379999999999999999999999999999999999986544
No 32
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.58 E-value=5.7e-08 Score=70.66 Aligned_cols=38 Identities=39% Similarity=0.545 Sum_probs=36.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
.+|||||+|.+.++|+.||..|||..|+|+.|.|++++
T Consensus 48 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 48 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 37899999999999999999999999999999999974
No 33
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.58 E-value=4.6e-08 Score=71.48 Aligned_cols=39 Identities=26% Similarity=0.478 Sum_probs=35.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 48 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 48 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 589999999999999999999999999999999999743
No 34
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.58 E-value=1.2e-07 Score=72.77 Aligned_cols=40 Identities=20% Similarity=0.162 Sum_probs=37.4
Q ss_pred CeEEEEECCHHHHHHHHHHhCCCeecC-----ceEEEEEecCCCC
Q 024281 4 DFAFVEFSDPRDADDARYSLNGRDVDG-----SRIIVEFARGGPR 43 (269)
Q Consensus 4 GfgfVeF~~~~dA~~Ai~~ldG~~l~G-----r~I~Ve~a~~~~r 43 (269)
|||||+|.+.++|+.||++|||.+|+| +.|.|+++.....
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRSP 95 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCCC
Confidence 899999999999999999999999999 9999999986544
No 35
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.58 E-value=3.8e-08 Score=73.83 Aligned_cols=42 Identities=26% Similarity=0.476 Sum_probs=38.8
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 479999999999999999999999999999999999986544
No 36
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.58 E-value=1e-07 Score=75.97 Aligned_cols=41 Identities=32% Similarity=0.519 Sum_probs=38.1
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||++|+|..|+|+.|.|+++.....
T Consensus 84 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 84 RGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 68999999999999999999999999999999999986543
No 37
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.57 E-value=5.3e-08 Score=76.36 Aligned_cols=40 Identities=28% Similarity=0.460 Sum_probs=37.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||+.|||.+|+|+.|.|+++....
T Consensus 64 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 103 (126)
T 3ex7_B 64 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 103 (126)
T ss_dssp CSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCC
Confidence 7899999999999999999999999999999999997543
No 38
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=5.4e-08 Score=73.04 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=37.6
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||..|||.+|+|+.|.|+++...
T Consensus 55 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 55 PRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCC
Confidence 4799999999999999999999999999999999999754
No 39
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=9.2e-08 Score=72.14 Aligned_cols=42 Identities=40% Similarity=0.646 Sum_probs=38.6
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||+.|||..|+|+.|.|+++.....
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 94 (102)
T 1x5s_A 53 SRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSD 94 (102)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCCC
T ss_pred cccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 468999999999999999999999999999999999986543
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=9.7e-08 Score=71.99 Aligned_cols=42 Identities=36% Similarity=0.427 Sum_probs=38.6
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||+.|||..|+|+.|.|+++.....
T Consensus 53 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 53 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp CSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCCC
Confidence 479999999999999999999999999999999999986543
No 41
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=98.57 E-value=4.2e-08 Score=67.16 Aligned_cols=42 Identities=40% Similarity=1.119 Sum_probs=36.9
Q ss_pred CCCcccCCCCCCCCCcccCCCCCcccccCCCCCcccccCCCCC
Q 024281 60 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNSP 102 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~~~k~~CyrCG~~Gh~~r~c~~~~ 102 (269)
...||+||..|||+.+|+... ...||.|++.||++++|+...
T Consensus 12 ~~~C~~Cg~~GH~a~~C~~~~-~~~C~~Cg~~GH~~~~C~~~~ 53 (55)
T 1a1t_A 12 TVKCFNCGKEGHIAKNCRAPR-KKGCWKCGKEGHQMKDCTERQ 53 (55)
T ss_dssp TCBCTTTCCBSSCGGGCSSCS-CCBCTTTCCBSSCGGGCSSSC
T ss_pred CcceeeeCCCCcChhhcCCCC-CCEeCCCCCcCCccCCCcCcC
Confidence 368999999999999999863 568999999999999998743
No 42
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.57 E-value=6.2e-08 Score=72.55 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=36.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||+.|||..|+|+.|.|+++...
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp EEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 689999999999999999999999999999999998754
No 43
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.56 E-value=7.8e-08 Score=72.06 Aligned_cols=41 Identities=27% Similarity=0.560 Sum_probs=37.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeec--CceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVD--GSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~--Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||++|||..|+ |+.|.|+++...+.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~~ 95 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGPS 95 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCCC
Confidence 689999999999999999999999999 99999999986543
No 44
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=1.2e-07 Score=71.55 Aligned_cols=42 Identities=55% Similarity=0.886 Sum_probs=39.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||+.|+|.+|+|+.|.|+++.....
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 77 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPR 77 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCC
Confidence 379999999999999999999999999999999999987654
No 45
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.56 E-value=6.7e-08 Score=71.71 Aligned_cols=37 Identities=24% Similarity=0.383 Sum_probs=35.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||+.|||.+|+|+.|.|++++
T Consensus 58 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 58 KGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp TTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred ccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 6899999999999999999999999999999999975
No 46
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=5.6e-08 Score=77.59 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=37.6
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||..|||..|.|+.|.|.|+...
T Consensus 71 ~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 71 NSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp SCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCC
T ss_pred cCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCc
Confidence 4799999999999999999999999999999999999854
No 47
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.55 E-value=5e-08 Score=73.95 Aligned_cols=39 Identities=38% Similarity=0.580 Sum_probs=35.9
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCC----eecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGR----DVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~----~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+.||+.|+|. .|+|+.|.|+||+.
T Consensus 52 srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 52 NRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp CSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 4799999999999999999999997 49999999999874
No 48
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1e-07 Score=73.32 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=38.1
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||..|||.+|+|+.|.|+++.....
T Consensus 65 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 65 KGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp CSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 68999999999999999999999999999999999986543
No 49
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.55 E-value=1.5e-07 Score=71.16 Aligned_cols=40 Identities=35% Similarity=0.576 Sum_probs=37.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 55 DPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp CCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTT
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCc
Confidence 6899999999999999999999999999999999998643
No 50
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.55 E-value=7.9e-08 Score=69.57 Aligned_cols=39 Identities=31% Similarity=0.598 Sum_probs=36.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|.++...
T Consensus 43 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 43 RGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 689999999999999999999999999999999999754
No 51
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.55 E-value=5.9e-08 Score=71.60 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=37.3
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||+.|||.+|+|+.|.|+++...
T Consensus 39 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 39 NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 4799999999999999999999999999999999998643
No 52
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.55 E-value=8.2e-08 Score=72.23 Aligned_cols=40 Identities=25% Similarity=0.539 Sum_probs=37.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||+.|+|..|+|+.|.|+++....
T Consensus 58 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 58 KGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred EeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 5899999999999999999999999999999999998654
No 53
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=1e-07 Score=71.50 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=38.2
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 48 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 48 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp TTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 47999999999999999999999999999999999997654
No 54
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.54 E-value=7e-08 Score=75.02 Aligned_cols=39 Identities=21% Similarity=0.394 Sum_probs=36.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||++|+|.+|+|+.|.|.++...
T Consensus 45 kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 45 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 689999999999999999999999999999999998753
No 55
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.53 E-value=2e-07 Score=69.82 Aligned_cols=41 Identities=27% Similarity=0.302 Sum_probs=38.1
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||..|||.+|+|+.|.|+++....
T Consensus 49 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (99)
T 1whw_A 49 PKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKK 89 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCS
T ss_pred cCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCc
Confidence 36999999999999999999999999999999999998654
No 56
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.2e-07 Score=71.77 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=38.4
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||..|+|.+|+|+.|.|+++.....
T Consensus 56 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 56 HQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp BCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTSC
T ss_pred CCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCc
Confidence 368999999999999999999999999999999999986543
No 57
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.4e-07 Score=71.63 Aligned_cols=40 Identities=30% Similarity=0.422 Sum_probs=37.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.|| .|+|.+|+|+.|.|+++.....
T Consensus 57 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 57 KGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp CSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred CeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 789999999999999999 9999999999999999986543
No 58
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.53 E-value=1.2e-07 Score=69.16 Aligned_cols=39 Identities=28% Similarity=0.611 Sum_probs=36.9
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+.||..|||..|+|+.|.|+++..
T Consensus 46 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 84 (88)
T 4a8x_A 46 SKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLA 84 (88)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECC
T ss_pred CCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCC
Confidence 478999999999999999999999999999999999864
No 59
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.2e-07 Score=71.71 Aligned_cols=41 Identities=29% Similarity=0.424 Sum_probs=37.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||..|+|.+|+|+.|.|+++.....
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 97 (103)
T 2cq0_A 57 KGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 97 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCCC
Confidence 58999999999999999999999999999999999986543
No 60
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.53 E-value=1.4e-07 Score=72.74 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=38.1
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 66 ~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 66 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp SCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence 36999999999999999999999999999999999998654
No 61
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=1e-07 Score=72.09 Aligned_cols=41 Identities=46% Similarity=0.776 Sum_probs=38.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||.+|||..|+|+.|.|+++....
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 54 PRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp BCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSCC
T ss_pred CCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcCC
Confidence 36899999999999999999999999999999999998654
No 62
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.52 E-value=1.1e-07 Score=71.05 Aligned_cols=39 Identities=23% Similarity=0.462 Sum_probs=37.1
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||+.|+|..|+|+.|.|+++...
T Consensus 44 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 82 (96)
T 2x1f_A 44 KGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNS 82 (96)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCC
Confidence 799999999999999999999999999999999999854
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.52 E-value=8.2e-08 Score=71.27 Aligned_cols=38 Identities=42% Similarity=0.615 Sum_probs=36.0
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
+|||||+|.+.++|+.||..|||..|+|+.|.|++++.
T Consensus 57 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 57 RGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 58999999999999999999999999999999999864
No 64
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.52 E-value=6.5e-08 Score=72.78 Aligned_cols=37 Identities=35% Similarity=0.512 Sum_probs=35.4
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||+.|||..|+|+.|.|++|+
T Consensus 63 ~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 63 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp EEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 6899999999999999999999999999999999974
No 65
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.51 E-value=8.5e-08 Score=72.69 Aligned_cols=39 Identities=26% Similarity=0.405 Sum_probs=36.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecC-ceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDG-SRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~G-r~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+.||+.|||..|+| +.|.|.++..
T Consensus 53 ~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~ 92 (100)
T 3ns6_A 53 TKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKD 92 (100)
T ss_dssp ECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHH
T ss_pred cceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECch
Confidence 36999999999999999999999999999 9999999863
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=2e-07 Score=70.44 Aligned_cols=41 Identities=39% Similarity=0.573 Sum_probs=38.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++.....
T Consensus 55 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cq3_A 55 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 95 (103)
T ss_dssp CCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSCC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCCC
Confidence 78999999999999999999999999999999999986543
No 67
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.51 E-value=2.6e-07 Score=71.24 Aligned_cols=41 Identities=27% Similarity=0.509 Sum_probs=38.0
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||+.|+|..|+|+.|.|+|+.....
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 97 (115)
T 2dgo_A 57 KGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPP 97 (115)
T ss_dssp EEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCCC
Confidence 58999999999999999999999999999999999986543
No 68
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.51 E-value=9.6e-08 Score=73.67 Aligned_cols=38 Identities=29% Similarity=0.260 Sum_probs=36.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
+|||||+|.+.++|+.||.+|||.+|+|+.|.|.++..
T Consensus 56 ~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 56 AVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 79999999999999999999999999999999999863
No 69
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.50 E-value=1.1e-07 Score=71.67 Aligned_cols=40 Identities=33% Similarity=0.546 Sum_probs=36.9
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||+ |+|..|+|+.|.|.++....
T Consensus 57 ~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~ 96 (101)
T 1fj7_A 57 NRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRD 96 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCC
T ss_pred cCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCC
Confidence 47999999999999999998 99999999999999998543
No 70
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=1.6e-07 Score=70.97 Aligned_cols=40 Identities=35% Similarity=0.532 Sum_probs=37.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 55 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 55 KGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCC
T ss_pred CEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEecccc
Confidence 6899999999999999999999999999999999998654
No 71
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.2e-07 Score=73.22 Aligned_cols=41 Identities=32% Similarity=0.423 Sum_probs=38.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||+.|||..|+|+.|.|.++....
T Consensus 63 ~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 63 PDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp TTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 37999999999999999999999999999999999997643
No 72
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=8.3e-08 Score=73.07 Aligned_cols=39 Identities=31% Similarity=0.432 Sum_probs=37.2
Q ss_pred CeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 4 GfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
|||||+|.+.++|+.||+.|+|.+|.|+.|+|.+|+...
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 899999999999999999999999999999999998654
No 73
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.50 E-value=1.3e-07 Score=69.96 Aligned_cols=39 Identities=28% Similarity=0.437 Sum_probs=36.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||. |||..|+|+.|.|.++...+
T Consensus 50 ~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 50 TGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp EEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred ceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 6899999999999999999 99999999999999998654
No 74
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=1.6e-07 Score=70.33 Aligned_cols=41 Identities=32% Similarity=0.605 Sum_probs=37.7
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||..|||..|+|+.|.|.++.....
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 50 MGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERATK 90 (98)
T ss_dssp EEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSSC
T ss_pred ccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCCC
Confidence 57999999999999999999999999999999999986543
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.49 E-value=9e-08 Score=70.72 Aligned_cols=40 Identities=28% Similarity=0.448 Sum_probs=37.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||.+|+|..|+|+.|.|+++....
T Consensus 48 ~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 48 KGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 6899999999999999999999999999999999998643
No 76
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.49 E-value=1e-07 Score=71.18 Aligned_cols=42 Identities=29% Similarity=0.481 Sum_probs=36.8
Q ss_pred CCCeEEEEECCHHHHHHHHHHhC-CCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLN-GRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ld-G~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||+.|+ +..|+|+.|.|+++...++
T Consensus 43 ~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~~ 85 (91)
T 2lxi_A 43 SRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKPK 85 (91)
T ss_dssp CSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCCC
T ss_pred cCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCCC
Confidence 47999999999999999999885 5689999999999986543
No 77
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.49 E-value=3.1e-08 Score=73.42 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=34.0
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||+.|||.+|+|+.|.|.++...
T Consensus 45 kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 45 KGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp EEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC---
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCC
Confidence 689999999999999999999999999999999998754
No 78
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.48 E-value=8.7e-08 Score=73.68 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=34.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEe
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a 38 (269)
+|||||+|.+.++|+.||.+|||..|+|+.|.|+++
T Consensus 68 ~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 68 VGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 799999999999999999999999999999999986
No 79
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.48 E-value=9.5e-08 Score=71.00 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=35.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||++|||..|+|+.|.|+++.
T Consensus 57 ~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 57 TGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEecc
Confidence 6899999999999999999999999999999999875
No 80
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=1.5e-07 Score=72.11 Aligned_cols=41 Identities=27% Similarity=0.542 Sum_probs=38.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||..|+|.+|+|+.|.|.|+.....
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 101 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPD 101 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCCC
Confidence 69999999999999999999999999999999999986543
No 81
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=1.2e-07 Score=73.39 Aligned_cols=40 Identities=28% Similarity=0.249 Sum_probs=37.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||..|||..|+|+.|.|+|+...
T Consensus 45 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 45 GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 4789999999999999999999999999999999999754
No 82
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.48 E-value=1.6e-07 Score=71.10 Aligned_cols=40 Identities=23% Similarity=0.478 Sum_probs=36.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.|| +|+|.+|+|+.|.|+++.....
T Consensus 56 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2dng_A 56 KGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRKQ 95 (103)
T ss_dssp EEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCCC
T ss_pred ceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCCC
Confidence 589999999999999999 9999999999999999986543
No 83
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.48 E-value=9.7e-08 Score=70.96 Aligned_cols=38 Identities=32% Similarity=0.386 Sum_probs=36.1
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
+|||||+|.+.++|+.||..|||..|+|+.|.|++++.
T Consensus 57 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 57 KSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp EEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 68999999999999999999999999999999999863
No 84
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.48 E-value=1.5e-07 Score=72.15 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=37.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||++|+|.+|+|+.|.|+++...
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 4799999999999999999999999999999999999753
No 85
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=2.8e-07 Score=69.89 Aligned_cols=41 Identities=32% Similarity=0.568 Sum_probs=38.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHh-CCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~l-dG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||..| ||.+|+|+.|.|+++....
T Consensus 57 ~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 57 HRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp SCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred cCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 3799999999999999999999 9999999999999998653
No 86
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.48 E-value=1.7e-07 Score=69.88 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=37.1
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 51 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 51 RGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSC
T ss_pred CcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCC
Confidence 699999999999999999999999999999999999854
No 87
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.47 E-value=1.5e-07 Score=72.47 Aligned_cols=37 Identities=24% Similarity=0.405 Sum_probs=35.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|++||.+|||..|+|+.|.|.++.
T Consensus 59 ~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 59 CGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 6999999999999999999999999999999999975
No 88
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.47 E-value=1.3e-07 Score=71.94 Aligned_cols=37 Identities=27% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||+.|+|.+|+|+.|.|+++.
T Consensus 70 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 70 LGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 6899999999999999999999999999999999985
No 89
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=1.1e-07 Score=69.16 Aligned_cols=37 Identities=30% Similarity=0.454 Sum_probs=35.3
Q ss_pred CCeEEEEECCHHHHHHHHHHh-CCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~l-dG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||.+| +|..|+|+.|.|+|++
T Consensus 48 kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 48 QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 699999999999999999999 9999999999999974
No 90
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.46 E-value=1.4e-07 Score=72.65 Aligned_cols=40 Identities=25% Similarity=0.435 Sum_probs=37.7
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|+++....
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 7999999999999999999999999999999999998654
No 91
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1.4e-07 Score=72.54 Aligned_cols=38 Identities=42% Similarity=0.657 Sum_probs=36.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
+|||||+|.+.++|+.||+.|+|..|+|+.|.|+++..
T Consensus 69 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 69 KGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp TTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCC
Confidence 79999999999999999999999999999999999874
No 92
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.46 E-value=1.2e-07 Score=73.19 Aligned_cols=40 Identities=30% Similarity=0.508 Sum_probs=37.3
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||+.|||.+|+|+.|.|+++....
T Consensus 67 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 67 KCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSC
T ss_pred CccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCC
Confidence 5899999999999999999999999999999999998543
No 93
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.46 E-value=1.6e-07 Score=73.90 Aligned_cols=40 Identities=18% Similarity=0.458 Sum_probs=36.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCee-----cCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDV-----DGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l-----~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|++||++|||.+| .|..|.|.|+...+
T Consensus 63 rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~p 107 (114)
T 2cq2_A 63 KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKVQ 107 (114)
T ss_dssp CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccCc
Confidence 68999999999999999999999998 68899999998654
No 94
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.4e-07 Score=70.99 Aligned_cols=40 Identities=23% Similarity=0.401 Sum_probs=37.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||+.|+|.+|+|+.|.|+++....
T Consensus 51 kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpj_A 51 KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA 90 (99)
T ss_dssp TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCC
Confidence 6999999999999999999999999999999999998543
No 95
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.45 E-value=1.4e-07 Score=71.99 Aligned_cols=40 Identities=23% Similarity=0.385 Sum_probs=37.2
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCc-eEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGS-RIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr-~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||..|||..|+|+ .|.|.++...
T Consensus 60 ~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 60 TKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp SCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred eeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 379999999999999999999999999999 9999998754
No 96
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.44 E-value=2e-07 Score=71.26 Aligned_cols=39 Identities=28% Similarity=0.485 Sum_probs=37.0
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|.++...
T Consensus 68 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 68 KGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEES
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccC
Confidence 699999999999999999999999999999999999754
No 97
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=1.3e-07 Score=70.92 Aligned_cols=40 Identities=25% Similarity=0.487 Sum_probs=37.0
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCce----EEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSR----IIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~----I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||..|||..|+|+. |.|+|+....
T Consensus 52 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 52 AGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYSG 95 (99)
T ss_dssp EEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCCS
T ss_pred CCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCCC
Confidence 589999999999999999999999999999 9999997543
No 98
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1.4e-07 Score=71.65 Aligned_cols=39 Identities=28% Similarity=0.486 Sum_probs=36.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||.+|+|..|+|+.|.|+++...
T Consensus 65 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 103 (106)
T 1p27_B 65 KGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVR 103 (106)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEES
T ss_pred eeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCC
Confidence 689999999999999999999999999999999998753
No 99
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.43 E-value=1.8e-07 Score=73.40 Aligned_cols=37 Identities=22% Similarity=0.247 Sum_probs=35.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||..|||.+|+|+.|.|+++.
T Consensus 55 ~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 55 QGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp TCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred cEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 6999999999999999999999999999999999985
No 100
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=1.5e-07 Score=72.43 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=35.4
Q ss_pred CCeEEEEECCHHHHHHHHHHhCC--CeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNG--RDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG--~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|++.++|+.||+.|++ .+|+|+.|.|++++..
T Consensus 52 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 52 INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 58999999999999999999986 4599999999999854
No 101
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.42 E-value=2.2e-07 Score=73.19 Aligned_cols=41 Identities=37% Similarity=0.566 Sum_probs=38.1
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||+.|+|.+|+|+.|.|.++....
T Consensus 72 ~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~ 112 (121)
T 2bz2_A 72 PRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 112 (121)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCC
Confidence 47999999999999999999999999999999999998543
No 102
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=4.9e-07 Score=67.80 Aligned_cols=40 Identities=28% Similarity=0.457 Sum_probs=36.8
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||. |++..|+|+.|.|.++....
T Consensus 51 ~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 51 PRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp CCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCC
T ss_pred CCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCc
Confidence 37999999999999999998 99999999999999998543
No 103
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=1.1e-07 Score=71.60 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=36.7
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|.|++.
T Consensus 62 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 62 EKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 479999999999999999999999999999999999863
No 104
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.41 E-value=1.6e-07 Score=71.00 Aligned_cols=39 Identities=31% Similarity=0.417 Sum_probs=36.3
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.|| .|+|..|+|+.|.|+++...
T Consensus 60 ~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 60 LKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp CCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCS
T ss_pred cCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCC
Confidence 3789999999999999999 99999999999999998754
No 105
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.41 E-value=5.2e-07 Score=68.37 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=37.9
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCee---cCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDV---DGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l---~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||+.|+|..| +|+.|.|.++.....
T Consensus 54 ~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 54 HKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCcccc
Confidence 369999999999999999999999988 899999999986543
No 106
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.40 E-value=2e-07 Score=76.73 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=35.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||..|||.+|+|+.|.|.++.
T Consensus 99 kGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~ 135 (156)
T 3n9u_C 99 KGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPAT 135 (156)
T ss_dssp EEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcC
Confidence 6899999999999999999999999999999999986
No 107
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.40 E-value=5.8e-07 Score=68.57 Aligned_cols=41 Identities=22% Similarity=0.369 Sum_probs=37.9
Q ss_pred CCCeEEEEECCHHHHHHHHHHhC------CCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLN------GRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ld------G~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||..|+ +..|+|+.|.|.++....
T Consensus 56 ~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 56 SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp BCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred CccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCc
Confidence 47899999999999999999999 999999999999998553
No 108
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.40 E-value=2e-07 Score=74.20 Aligned_cols=40 Identities=43% Similarity=0.674 Sum_probs=37.3
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||++|+|.+|+|+.|.|+++...
T Consensus 87 ~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 87 SRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSS
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCC
Confidence 4689999999999999999999999999999999998754
No 109
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.39 E-value=8e-07 Score=68.23 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=36.7
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|+|.+|+|+.|.|+++...
T Consensus 56 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 56 RGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred eeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 689999999999999999999999999999999998743
No 110
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.39 E-value=3.5e-07 Score=69.20 Aligned_cols=40 Identities=33% Similarity=0.475 Sum_probs=37.3
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecC---ceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDG---SRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~G---r~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||+.|+|..|.| +.|.|.++....
T Consensus 56 ~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 56 KGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp EEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSC
T ss_pred CcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCc
Confidence 6899999999999999999999999998 999999998654
No 111
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=7.3e-07 Score=68.85 Aligned_cols=39 Identities=31% Similarity=0.414 Sum_probs=36.1
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||+.|++ +|+|+.|.|+++...
T Consensus 58 ~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 58 SRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp CCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred cceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 468999999999999999999999 899999999999754
No 112
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=2e-07 Score=70.33 Aligned_cols=39 Identities=31% Similarity=0.521 Sum_probs=36.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||+.|+|..|+|+.|.|+++...
T Consensus 50 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 50 KGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASE 88 (104)
T ss_dssp EEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCT
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCc
Confidence 689999999999999999999999999999999998754
No 113
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=1.8e-07 Score=72.50 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=36.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhCC--CeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNG--RDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG--~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|++.++|+.||+.|++ .+|+|+.|.|.|++...
T Consensus 52 kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 52 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 69999999999999999998864 79999999999998654
No 114
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=4.2e-07 Score=69.61 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=35.9
Q ss_pred CCeEEEEECCHHHHHHHHHHh--CCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSL--NGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~l--dG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|++.++|+.||+.| ++.+|+|+.|.|.|+....
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 51 KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 699999999999999999987 5788999999999998543
No 115
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.38 E-value=3.8e-07 Score=71.39 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=37.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|+++...
T Consensus 75 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 75 SLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred EeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 4699999999999999999999999999999999999754
No 116
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.38 E-value=2.4e-07 Score=71.27 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=36.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||+.|+|..|+|+.|.|+++...
T Consensus 68 ~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 68 KGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp EEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSS
T ss_pred ceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccC
Confidence 589999999999999999999999999999999998743
No 117
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.37 E-value=2.9e-07 Score=72.61 Aligned_cols=37 Identities=32% Similarity=0.398 Sum_probs=35.4
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||.+|||.+|+|+.|.|.++.
T Consensus 71 ~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 71 IVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred eEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcC
Confidence 4899999999999999999999999999999999975
No 118
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.37 E-value=3.2e-07 Score=69.92 Aligned_cols=41 Identities=37% Similarity=0.465 Sum_probs=37.1
Q ss_pred CCCeEEEEECCHHHHHHHHHHhC--CCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ld--G~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||..|+ +..|+|+.|.|+++....
T Consensus 51 ~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 51 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSC
T ss_pred cCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCC
Confidence 47999999999999999999996 589999999999998543
No 119
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.36 E-value=3e-07 Score=69.53 Aligned_cols=41 Identities=17% Similarity=0.294 Sum_probs=37.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCe-ecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRD-VDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~-l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||+.|+|.. |+|+.|.|+++....
T Consensus 50 ~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 50 SKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp EEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred ccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 36899999999999999999999999 999999999997543
No 120
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.36 E-value=3e-07 Score=70.61 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=35.7
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCe--ecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRD--VDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~--l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|++.++|+.||+.|++.. |.|+.|.|+|++.
T Consensus 56 ~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 56 KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 37999999999999999999999875 7899999999874
No 121
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.71 E-value=4.9e-08 Score=75.65 Aligned_cols=41 Identities=32% Similarity=0.446 Sum_probs=38.0
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||..|||..|+|+.|.|+++.....
T Consensus 57 ~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 57 KGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 68999999999999999999999999999999999986543
No 122
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.36 E-value=3.5e-07 Score=66.98 Aligned_cols=38 Identities=29% Similarity=0.433 Sum_probs=35.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.|| .|+|..|+|+.|.|++++..
T Consensus 48 ~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 48 KGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp CEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred ceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 789999999999999999 99999999999999998753
No 123
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.36 E-value=3.8e-07 Score=76.08 Aligned_cols=39 Identities=23% Similarity=0.504 Sum_probs=36.1
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecC--ceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~G--r~I~Ve~a~~~ 41 (269)
+|||||+|++.++|+.||++|||.+|.| +.|+|+|++..
T Consensus 84 rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 84 QFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp CEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 5799999999999999999999999976 99999999854
No 124
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.36 E-value=3e-07 Score=70.86 Aligned_cols=38 Identities=29% Similarity=0.458 Sum_probs=35.8
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+.|| .|||..|+|+.|.|.++..
T Consensus 66 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~ 103 (114)
T 2cq4_A 66 SKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQA 103 (114)
T ss_dssp CCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHH
T ss_pred cCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCC
Confidence 3689999999999999999 9999999999999999874
No 125
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.34 E-value=4.8e-07 Score=72.05 Aligned_cols=39 Identities=33% Similarity=0.486 Sum_probs=35.6
Q ss_pred CCe-EEEEECCHHHHHHHHHHhCCCeecC--ceEEEEEecCC
Q 024281 3 RDF-AFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 41 (269)
Q Consensus 3 rGf-gfVeF~~~~dA~~Ai~~ldG~~l~G--r~I~Ve~a~~~ 41 (269)
.|| |||+|++.++|+.||++|||.+|.| ..|.|+|++..
T Consensus 61 ~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 61 NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 486 9999999999999999999999998 58999999854
No 126
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.34 E-value=4.7e-07 Score=72.77 Aligned_cols=39 Identities=26% Similarity=0.622 Sum_probs=36.2
Q ss_pred CCe-EEEEECCHHHHHHHHHHhCCCeecC--ceEEEEEecCC
Q 024281 3 RDF-AFVEFSDPRDADDARYSLNGRDVDG--SRIIVEFARGG 41 (269)
Q Consensus 3 rGf-gfVeF~~~~dA~~Ai~~ldG~~l~G--r~I~Ve~a~~~ 41 (269)
+|| |||+|.+.++|+.||++|||.+|.| ..|+|+|++..
T Consensus 65 ~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 65 NQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp TEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred CCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 577 9999999999999999999999998 89999999854
No 127
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.34 E-value=3.8e-07 Score=69.55 Aligned_cols=41 Identities=17% Similarity=0.079 Sum_probs=36.4
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.|| +||+.+|+|+.|.|.++.....
T Consensus 54 ~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~~~ 94 (102)
T 1wez_A 54 VTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTAGT 94 (102)
T ss_dssp EEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCCCC
T ss_pred EeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCCCC
Confidence 3689999999999999999 6899999999999999875543
No 128
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.33 E-value=4.9e-07 Score=70.77 Aligned_cols=40 Identities=18% Similarity=0.119 Sum_probs=35.6
Q ss_pred CCCeEEEEECCHHHHHHHHHHhC--CCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLN--GRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ld--G~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|++.++|+.||+.|+ +.+|+|+.|.|++++..
T Consensus 61 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~ 102 (112)
T 1x4f_A 61 MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKY 102 (112)
T ss_dssp TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECccc
Confidence 37999999999999999999885 46799999999999754
No 129
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.33 E-value=3.8e-07 Score=73.18 Aligned_cols=40 Identities=28% Similarity=0.428 Sum_probs=37.4
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||..|||..|+|+.|.|.+++..
T Consensus 91 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 91 MKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCS
T ss_pred cccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 3689999999999999999999999999999999999754
No 130
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=2e-07 Score=73.12 Aligned_cols=36 Identities=22% Similarity=0.161 Sum_probs=34.7
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||. |||.+|+|+.|.|.++.
T Consensus 67 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 102 (124)
T 1wel_A 67 TGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPIT 102 (124)
T ss_dssp EEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECC
Confidence 6899999999999999999 99999999999999986
No 131
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.32 E-value=4.5e-07 Score=69.84 Aligned_cols=38 Identities=29% Similarity=0.405 Sum_probs=36.4
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
+|||||+|.+.++|+.||..|||..|+|+.|.|.++..
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 47 RGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 68999999999999999999999999999999999874
No 132
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.32 E-value=1.9e-07 Score=67.63 Aligned_cols=34 Identities=26% Similarity=0.499 Sum_probs=31.8
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCc-eEEE
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGS-RIIV 35 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr-~I~V 35 (269)
.+|||||+|.+.++|+.||..|||..|+|+ .|.|
T Consensus 46 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 46 TKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred EeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 379999999999999999999999999999 8876
No 133
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.32 E-value=6.5e-07 Score=69.87 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=36.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.|| +|+|..|+|+.|.|+++.....
T Consensus 78 ~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 117 (124)
T 2jwn_A 78 KGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTNMP 117 (124)
T ss_dssp EEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCCCS
T ss_pred ccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCCCC
Confidence 689999999999999999 8999999999999999985443
No 134
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=3.9e-07 Score=70.12 Aligned_cols=40 Identities=15% Similarity=0.236 Sum_probs=35.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCC--eecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~--~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|++.++|+.||+.|++. +|+|+.|.|+|+....
T Consensus 51 kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 51 KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 799999999999999999998764 5999999999998543
No 135
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.30 E-value=5.3e-07 Score=65.68 Aligned_cols=34 Identities=24% Similarity=0.502 Sum_probs=32.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEE
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEF 37 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~ 37 (269)
+|||||+|.+.++|+.|| .|||..|+|+.|.|+.
T Consensus 53 kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 53 KNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 799999999999999999 9999999999999974
No 136
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=6.6e-07 Score=69.43 Aligned_cols=37 Identities=22% Similarity=0.143 Sum_probs=34.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
.+|||||+|.+.++|++|| .||+.+|+|+.|.|..+.
T Consensus 55 ~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~ 91 (109)
T 2dnn_A 55 NNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPAT 91 (109)
T ss_dssp CCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECC
T ss_pred CCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 4799999999999999999 799999999999998875
No 137
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.29 E-value=4.6e-07 Score=71.65 Aligned_cols=40 Identities=18% Similarity=0.311 Sum_probs=36.1
Q ss_pred CCeEEEEECCHHHHHHHHHHhCC--CeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNG--RDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG--~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|++.++|+.||+.|++ .+|+|+.|.|+|++...
T Consensus 67 kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 67 KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 69999999999999999999984 68999999999997543
No 138
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.29 E-value=4.1e-07 Score=64.64 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=33.4
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEe
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a 38 (269)
.+|||||+|.+.++|+.||+ |+|..|+|+.|.|.+|
T Consensus 40 ~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 40 HRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp SCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred cCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 36899999999999999997 9999999999999875
No 139
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.26 E-value=5.3e-07 Score=70.44 Aligned_cols=36 Identities=22% Similarity=0.106 Sum_probs=34.4
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||+ ||+.+|+|+.|.|.++.
T Consensus 61 ~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~ 96 (118)
T 2db1_A 61 SGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSH 96 (118)
T ss_dssp EEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEEC
T ss_pred CeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECC
Confidence 6899999999999999999 99999999999999985
No 140
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.26 E-value=4.9e-07 Score=72.40 Aligned_cols=41 Identities=46% Similarity=0.744 Sum_probs=38.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+.++|+.||..|+|..|+|+.|.|++++...
T Consensus 88 ~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 88 SRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp CCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 36899999999999999999999999999999999998653
No 141
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.25 E-value=4.6e-07 Score=66.66 Aligned_cols=38 Identities=29% Similarity=0.393 Sum_probs=34.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.+ |+.||..|||..|+|+.|.|+++...
T Consensus 43 ~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 43 KGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp CEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred ceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 789999999999 99999999999999999999998754
No 142
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.25 E-value=1.2e-06 Score=67.67 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=37.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|.+.++|+.||.. ++.+|+|+.|.|+++.....
T Consensus 68 ~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 68 SRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp CCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred cCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 368999999999999999988 99999999999999986543
No 143
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.25 E-value=3.5e-07 Score=72.55 Aligned_cols=40 Identities=38% Similarity=0.594 Sum_probs=37.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCC----eecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGR----DVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~----~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|.+. +|+.||..|||. +|+|+.|.|.++....
T Consensus 66 ~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~~ 109 (131)
T 2m2b_A 66 NRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGSK 109 (131)
T ss_dssp BCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCSC
T ss_pred cceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCCC
Confidence 479999999999 999999999999 9999999999998643
No 144
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.23 E-value=9.4e-07 Score=75.64 Aligned_cols=39 Identities=28% Similarity=0.265 Sum_probs=37.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
++|||||+|.+.++|+.||++|||.+|.|+.|.|.+++.
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 479999999999999999999999999999999999874
No 145
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.23 E-value=7.8e-07 Score=75.90 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=36.3
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
+|||||+|.+.++|+.||++|||.+|+|+.|.|.++..
T Consensus 143 ~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~ 180 (213)
T 4f02_A 143 KGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKS 180 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred ceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCC
Confidence 68999999999999999999999999999999999874
No 146
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.23 E-value=4.3e-07 Score=79.26 Aligned_cols=38 Identities=18% Similarity=0.271 Sum_probs=36.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
.+|||||+|.+.++|+.||++|||.+|+|+.|.|.++.
T Consensus 111 skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~ 148 (229)
T 3q2s_C 111 SKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVN 148 (229)
T ss_dssp EEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECC
T ss_pred cceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECC
Confidence 36899999999999999999999999999999999975
No 147
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.22 E-value=6.7e-07 Score=68.49 Aligned_cols=38 Identities=16% Similarity=0.226 Sum_probs=35.2
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+.||. |+|.+|+|+.|.|.++..
T Consensus 51 ~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~ 88 (103)
T 1s79_A 51 FKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDD 88 (103)
T ss_dssp CCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHH
T ss_pred CccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchH
Confidence 47999999999999999998 999999999999998763
No 148
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=1.9e-07 Score=68.05 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=34.1
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||..|||..|+|+.|+|.+..
T Consensus 47 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 47 KGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 7899999999999999999999999999998877654
No 149
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=9.5e-07 Score=68.30 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=35.3
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+.||.. |+.+|+|+.|.|.++..
T Consensus 56 ~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~ 93 (114)
T 2cpy_A 56 GLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTL 93 (114)
T ss_dssp CSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECH
T ss_pred cceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCH
Confidence 479999999999999999977 99999999999999863
No 150
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.17 E-value=9.1e-07 Score=62.91 Aligned_cols=36 Identities=28% Similarity=0.408 Sum_probs=34.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEe
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a 38 (269)
.+|||||+|.+.++|+.||..|+ ..|+|+.|.|++|
T Consensus 41 ~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 41 SRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred cCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 36899999999999999999999 9999999999987
No 151
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.16 E-value=8.5e-07 Score=71.55 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=34.3
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||+ ||+.+|+|+.|.|.++.
T Consensus 88 rG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~ 123 (136)
T 2hgl_A 88 SGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSH 123 (136)
T ss_dssp EEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECC
T ss_pred CeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECC
Confidence 6899999999999999999 99999999999999875
No 152
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.16 E-value=8.2e-07 Score=67.90 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=34.8
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
.+|||||+|.+.++|+.||. ||+..|.|+.|.|.++.
T Consensus 54 ~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~ 90 (107)
T 2lmi_A 54 RRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEIN 90 (107)
T ss_dssp TCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECC
T ss_pred EeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECC
Confidence 47899999999999999999 99999999999999876
No 153
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=1.8e-06 Score=66.10 Aligned_cols=40 Identities=25% Similarity=0.345 Sum_probs=35.1
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
.+|||||+|++.++|+.||+.|++ +.|+.|.|.|+...+.
T Consensus 53 ~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 53 KPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp SSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 579999999999999999999766 7899999999986543
No 154
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=1.8e-06 Score=66.31 Aligned_cols=37 Identities=14% Similarity=0.341 Sum_probs=34.3
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCee--------cCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDV--------DGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l--------~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||..|||..| .++.|.|.|+.
T Consensus 66 ~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~ 110 (114)
T 1x5o_A 66 RGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSG 110 (114)
T ss_dssp EEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECC
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccC
Confidence 68999999999999999999999999 57779999987
No 155
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.12 E-value=1.4e-06 Score=65.97 Aligned_cols=39 Identities=28% Similarity=0.368 Sum_probs=35.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.||.. ++..|+|+.|.|+++....
T Consensus 58 ~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~ 96 (105)
T 2dh8_A 58 RGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRG 96 (105)
T ss_dssp EEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSS
T ss_pred ceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCC
Confidence 58999999999999999998 9999999999999987543
No 156
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.12 E-value=3e-06 Score=62.90 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=35.4
Q ss_pred CeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 4 GfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
|+|||+|.+.++|+.||..|||..|+|+.|.|+++...
T Consensus 55 ~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 55 AVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp EEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCcc
Confidence 45999999999999999999999999999999998754
No 157
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.10 E-value=2.2e-06 Score=62.51 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=32.0
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEe
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a 38 (269)
+|||||+|.+.++|+.|| .+++.+|+|+.|.|.+|
T Consensus 53 ~g~afV~f~~~~~a~~A~-~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 53 RGFGFILFKDAASVEKVL-DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp EEEEEEEESSTHHHHHHH-HSSCEEETTEEEEEEEC
T ss_pred ccEEEEEECCHHHHHHHH-HhCCCEECCEEEEEEeC
Confidence 689999999999999999 45788999999999875
No 158
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.10 E-value=3.3e-06 Score=64.83 Aligned_cols=39 Identities=26% Similarity=0.316 Sum_probs=35.3
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||..| +..|+|+.|.|.++...
T Consensus 66 ~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~ 104 (109)
T 2rs2_A 66 SRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPR 104 (109)
T ss_dssp CTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCC
T ss_pred cCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCC
Confidence 3689999999999999999987 49999999999999754
No 159
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=2.3e-06 Score=65.02 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=34.9
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+.||.. ++..|.|+.|.|.++..
T Consensus 56 ~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~ 93 (104)
T 1wg5_A 56 STGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSR 93 (104)
T ss_dssp BCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECT
T ss_pred cceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCH
Confidence 379999999999999999987 99999999999998763
No 160
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.07 E-value=8e-07 Score=72.00 Aligned_cols=40 Identities=20% Similarity=0.070 Sum_probs=36.4
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGP 42 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~ 42 (269)
.+|||||+|++.++|+.|| +||+.+|+|+.|.|..+....
T Consensus 85 srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 85 VTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp SSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred CceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 4799999999999999999 899999999999999887543
No 161
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=98.05 E-value=2.1e-06 Score=63.70 Aligned_cols=42 Identities=26% Similarity=0.633 Sum_probs=30.3
Q ss_pred CCcccCCCCCCCCCcccCC-------------------CCCcccccCCCCCcccccCCCCC
Q 024281 61 GRCFNCGIDGHWARDCKAG-------------------DWKNKCYRCGERGHIERNCQNSP 102 (269)
Q Consensus 61 ~rc~~cG~~GH~ardC~~~-------------------~~k~~CyrCG~~Gh~~r~c~~~~ 102 (269)
..||+|+..||++.+||.. .....||.||+.||+.++|+...
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~~rcY~c~~~gh~~~~c~~p~~~~~CYnCG~~GH~~rdC~~~r 66 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKEKR 66 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGGTCCCCBC-------------CCCBCSSSSCBSSCGGGCSSCC
T ss_pred CCCCCCCCCCCccccCCCcccccccccCCcccccccCCCCCCeecccCCCCcCcccCCccc
Confidence 4577777777777777642 23467999999999999999853
No 162
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.98 E-value=4.9e-06 Score=61.76 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=33.7
Q ss_pred eEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 5 fgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
||||+|.+.++|+.||. |+|.+|+|+.|.|.++...
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~ 82 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQK 82 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCS
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcC
Confidence 99999999999999999 9999999999999988643
No 163
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.98 E-value=9.9e-06 Score=60.94 Aligned_cols=39 Identities=15% Similarity=0.264 Sum_probs=34.4
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGGPR 43 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~~r 43 (269)
+|||||+|.+.++|+.||.+ +..|+|+.|.|.++.....
T Consensus 57 ~g~afV~f~~~~~a~~A~~~--~~~~~g~~l~v~~a~~~~~ 95 (103)
T 2cqg_A 57 KGFGFVRFTEYETQVKVMSQ--RHMIDGRWCDCKLPNSKQS 95 (103)
T ss_dssp EEEEEEEESSHHHHHHHHHS--CEEETTEEEEEECCCTTCC
T ss_pred cceEEEEECCHHHHHHHHHc--CCeeCCeEEEEEecCCCCc
Confidence 58999999999999999984 6789999999999986543
No 164
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=97.96 E-value=3.2e-06 Score=59.79 Aligned_cols=36 Identities=19% Similarity=0.320 Sum_probs=32.7
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEe
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a 38 (269)
.+|||||+|.+.++|+.||. +++..|+|+.|.|.+|
T Consensus 40 ~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 40 RRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp SCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred cCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 37899999999999999997 4899999999999875
No 165
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=97.95 E-value=8.7e-06 Score=65.56 Aligned_cols=39 Identities=38% Similarity=0.606 Sum_probs=36.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||+.|+|..|.|+.|.|.++...
T Consensus 45 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 45 YGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp CSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 589999999999999999999999999999999998743
No 166
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=97.95 E-value=8e-06 Score=71.96 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=37.2
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||+.|||..|.|+.|.|.|+...
T Consensus 51 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 90 (282)
T 3pgw_A 51 MRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTD 90 (282)
T ss_pred cceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccC
Confidence 3699999999999999999999999999999999999643
No 167
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=97.93 E-value=7.5e-06 Score=66.71 Aligned_cols=39 Identities=33% Similarity=0.590 Sum_probs=36.0
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.|| +|+|..|.|+.|.|.++...
T Consensus 53 ~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~ 91 (175)
T 1fje_B 53 NRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGR 91 (175)
T ss_dssp TTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCS
T ss_pred cccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCc
Confidence 4799999999999999999 69999999999999998753
No 168
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=97.92 E-value=4.2e-06 Score=66.67 Aligned_cols=37 Identities=22% Similarity=0.124 Sum_probs=33.3
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
.+|||||+|.+.++|+.||+. ++.+|+|+.|.|..+.
T Consensus 83 srGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~ 119 (126)
T 2hgm_A 83 ITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSS 119 (126)
T ss_dssp SCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEEC
T ss_pred CceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECC
Confidence 479999999999999999974 7799999999998874
No 169
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=97.92 E-value=8.3e-06 Score=65.35 Aligned_cols=39 Identities=36% Similarity=0.628 Sum_probs=36.4
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||+.|+|..|.|+.|.|.++...
T Consensus 44 ~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 44 LGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 489999999999999999999999999999999998743
No 170
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.87 E-value=8.5e-06 Score=67.51 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=36.2
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.|| .|+|..|.|+.|.|.++...
T Consensus 50 ~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 50 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp TTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred CCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 4799999999999999999 99999999999999998754
No 171
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.85 E-value=1.1e-05 Score=69.37 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=36.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||+.|+|..|.|+.|.|.++...
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 699999999999999999999999999999999998754
No 172
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=97.85 E-value=1.5e-05 Score=63.69 Aligned_cols=39 Identities=28% Similarity=0.547 Sum_probs=36.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++...
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 41 VNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 589999999999999999999999999999999998644
No 173
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=97.82 E-value=1.3e-05 Score=64.86 Aligned_cols=39 Identities=21% Similarity=0.416 Sum_probs=35.8
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.|| .|+|..|.|+.|.|.++...
T Consensus 50 ~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 50 DKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp TTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSC
T ss_pred CCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCccc
Confidence 3799999999999999999 99999999999999987643
No 174
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.82 E-value=5.3e-06 Score=65.69 Aligned_cols=36 Identities=19% Similarity=0.029 Sum_probs=33.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||++ |+.+|.|+.|.|..+.
T Consensus 68 ~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~ 103 (123)
T 2dha_A 68 TGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRST 103 (123)
T ss_dssp EEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEEC
T ss_pred eeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECC
Confidence 69999999999999999986 9999999999998774
No 175
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=97.81 E-value=1.5e-05 Score=63.02 Aligned_cols=40 Identities=28% Similarity=0.665 Sum_probs=24.4
Q ss_pred CCcccCCCCCCCCCcccCCC-------------------CCcccccCCCCCcccccCCC
Q 024281 61 GRCFNCGIDGHWARDCKAGD-------------------WKNKCYRCGERGHIERNCQN 100 (269)
Q Consensus 61 ~rc~~cG~~GH~ardC~~~~-------------------~k~~CyrCG~~Gh~~r~c~~ 100 (269)
..||+|+..||++++|+... ....||.|++.||++++|++
T Consensus 65 ~~C~~Cg~~GH~~~~Cp~~~~~y~~~~~~~~~~~~~~~~~~~~Cy~Cg~~GH~a~dCp~ 123 (124)
T 2lli_A 65 VQCTLCKSKKHSKERCPSIWRAYILVDDNEKAKPKVLPFHTIYCYNCGGKGHFGDDCKE 123 (124)
T ss_dssp CSSSSSCSSCCCTTTCCCSTTSCCSSSCCCCCCCSCCCCCCCCTTTTSSSCTTTTTSCC
T ss_pred ccCCCCCcCCcchhhCCCccccccccCccccccccccCCCCCCcCCCCCCCcCcccCcC
Confidence 45666666666666666431 12356666666666666664
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.80 E-value=1.1e-05 Score=67.29 Aligned_cols=39 Identities=26% Similarity=0.413 Sum_probs=36.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++...
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 699999999999999999999999999999999998754
No 177
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=97.76 E-value=2.1e-05 Score=66.04 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=35.3
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+.||..|+|..|.|+.|.|.++..
T Consensus 69 ~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~ 107 (216)
T 2qfj_A 69 HKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSN 107 (216)
T ss_dssp CCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSC
T ss_pred cCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCC
Confidence 479999999999999999999999999999999988764
No 178
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=97.76 E-value=2.1e-05 Score=62.25 Aligned_cols=41 Identities=24% Similarity=0.555 Sum_probs=30.5
Q ss_pred CCcccCCCCCCCCCcccCCCCCcccccCCCCCcccccCCCC
Q 024281 61 GRCFNCGIDGHWARDCKAGDWKNKCYRCGERGHIERNCQNS 101 (269)
Q Consensus 61 ~rc~~cG~~GH~ardC~~~~~k~~CyrCG~~Gh~~r~c~~~ 101 (269)
..||+|+..||++.+|+.......||.|++.||++++|+..
T Consensus 43 ~~C~~Cg~~GH~~~~C~~~~~~~~C~~Cg~~GH~~~~Cp~~ 83 (124)
T 2lli_A 43 IQCSKCDEVGHYRSQCPHKWKKVQCTLCKSKKHSKERCPSI 83 (124)
T ss_dssp SCSSSSSCSSSSTTTSCCCCCCCSSSSSCSSCCCTTTCCCS
T ss_pred ccccccCCCCCccccCcCcccCccCCCCCcCCcchhhCCCc
Confidence 46777777777777777665456788888888888888764
No 179
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.75 E-value=2.1e-05 Score=59.17 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=34.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+.+||+|.+.+.|..||. |||.+|+|+.|+|.++...
T Consensus 49 ~d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 49 EDKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp SSSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred cCCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 3569999999999999998 9999999999999998754
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.75 E-value=2e-05 Score=69.41 Aligned_cols=39 Identities=28% Similarity=0.548 Sum_probs=36.8
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||.+|+|..|+|+.|.|.|+...
T Consensus 226 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 264 (284)
T 3smz_A 226 KGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPG 264 (284)
T ss_dssp EEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSS
T ss_pred ccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCC
Confidence 689999999999999999999999999999999999743
No 181
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=97.72 E-value=1.1e-05 Score=60.67 Aligned_cols=38 Identities=16% Similarity=0.263 Sum_probs=34.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||. ++..|+|+.|.|.++...
T Consensus 49 ~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~ 86 (102)
T 2xs2_A 49 SKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRK 86 (102)
T ss_dssp EEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEEC
T ss_pred ccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcC
Confidence 36899999999999999998 999999999999998743
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.65 E-value=4e-05 Score=67.29 Aligned_cols=38 Identities=24% Similarity=0.413 Sum_probs=36.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
+|||||+|.+.++|+.||..|+|..|.|+.|.|.++..
T Consensus 58 kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~ 95 (261)
T 3sde_A 58 RGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH 95 (261)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc
Confidence 79999999999999999999999999999999999863
No 183
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=97.62 E-value=4.3e-05 Score=64.95 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=36.3
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|++..|.|+.|.|.++...
T Consensus 57 ~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~ 95 (213)
T 4f02_A 57 LGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRD 95 (213)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cccccceeCCHHHHHHHHHHhhhhhcCCccccccccccc
Confidence 589999999999999999999999999999999998643
No 184
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.62 E-value=5e-05 Score=70.30 Aligned_cols=38 Identities=21% Similarity=0.580 Sum_probs=32.6
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeec---Cc--eEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVD---GS--RIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~---Gr--~I~Ve~a~ 39 (269)
.||||||+|.+.+||++||++|||++|. |. .|.|.|+.
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~ 97 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEee
Confidence 4799999999999999999999999884 44 57777764
No 185
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=97.61 E-value=5.8e-05 Score=48.20 Aligned_cols=25 Identities=32% Similarity=0.809 Sum_probs=19.6
Q ss_pred CCCCCCCcccCCCCCCCCCcccCCC
Q 024281 56 PPPGSGRCFNCGIDGHWARDCKAGD 80 (269)
Q Consensus 56 ~~~~~~rc~~cG~~GH~ardC~~~~ 80 (269)
+......||+||+.|||+++|+...
T Consensus 6 ~~~~~~~C~~Cgk~GH~ardCP~~~ 30 (40)
T 1a6b_B 6 SQLDRDQCAYCKEKGHWAKDCPKKP 30 (40)
T ss_dssp CSCCSSSCSSSCCTTCCTTSCSSSC
T ss_pred CCCCCCeeeECCCCCcchhhCcCCc
Confidence 4445678999999999999988764
No 186
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.57 E-value=4.8e-05 Score=58.51 Aligned_cols=35 Identities=14% Similarity=0.235 Sum_probs=29.6
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.||++|+ .|+|..|.|..+.
T Consensus 52 ~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 52 KGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSSP 86 (114)
T ss_dssp TSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECCS
T ss_pred ccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccCC
Confidence 7999999999999999999994 3788877776543
No 187
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=97.54 E-value=3.8e-05 Score=61.72 Aligned_cols=39 Identities=15% Similarity=0.134 Sum_probs=32.4
Q ss_pred CCCeEEEEECC----HHH----HHHHHH--HhCCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSD----PRD----ADDARY--SLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~----~~d----A~~Ai~--~ldG~~l~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+ +.+ |..||. +|+|..|+|+.|+|.+...
T Consensus 47 slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 47 PLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKH 95 (136)
T ss_dssp EEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCT
T ss_pred eeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcc
Confidence 47999999996 434 789998 8999999999999998753
No 188
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.53 E-value=7.2e-05 Score=66.11 Aligned_cols=40 Identities=23% Similarity=0.436 Sum_probs=36.9
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
.+|||||+|.+.++|+.||..|+|..|.|+.|.|.++...
T Consensus 158 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 197 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPL 197 (292)
T ss_dssp -CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred cceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 4799999999999999999999999999999999998754
No 189
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=97.51 E-value=7.2e-05 Score=65.83 Aligned_cols=39 Identities=21% Similarity=0.469 Sum_probs=36.7
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|+|..|+|+.|.|.++...
T Consensus 137 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 137 KGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred ceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 689999999999999999999999999999999998753
No 190
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.47 E-value=0.00014 Score=53.61 Aligned_cols=35 Identities=40% Similarity=0.584 Sum_probs=27.6
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCee--cCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDV--DGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l--~Gr~I~Ve~a~~ 40 (269)
.+|||||+|.+.++|+ +|++..+ .|..|.|.++..
T Consensus 47 srGfaFV~F~~~~~A~----~~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 47 FRAFAFVTFADDKVAQ----SLCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp CCSEEEEEESCHHHHH----HHTTCEEEETTEEEEEEECC-
T ss_pred CCCEEEEEECCHHHHH----HHcCCCcccCCEEEEEEEcCC
Confidence 3799999999999988 3567665 488888888864
No 191
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=97.45 E-value=9.2e-05 Score=61.05 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=34.2
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||.. ++..|+|+.|.|.++...
T Consensus 55 ~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~ 92 (196)
T 1l3k_A 55 RGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSR 92 (196)
T ss_dssp EEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-
T ss_pred cceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCc
Confidence 68999999999999999966 899999999999998754
No 192
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.40 E-value=0.0001 Score=55.86 Aligned_cols=34 Identities=21% Similarity=0.282 Sum_probs=31.4
Q ss_pred eEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 5 FAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 5 fgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
-+||+|.+.++|..||+ |||++|+|+.|+|.+..
T Consensus 60 ~~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 60 QMLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred cEEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 48999999999999998 99999999999998753
No 193
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.0001 Score=54.58 Aligned_cols=19 Identities=21% Similarity=0.621 Sum_probs=16.0
Q ss_pred cccccCCCCCcccccCCCC
Q 024281 83 NKCYRCGERGHIERNCQNS 101 (269)
Q Consensus 83 ~~CyrCG~~Gh~~r~c~~~ 101 (269)
..||.|++.||++.+|++.
T Consensus 6 ~~C~~Cg~~GH~~~~Cp~~ 24 (83)
T 3nyb_B 6 VQCTLCKSKKHSKERCPSI 24 (83)
T ss_dssp -CCSSSCCSSSCGGGCGGG
T ss_pred CCCCCCCCCCCccccCCCc
Confidence 4699999999999999874
No 194
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.35 E-value=9.6e-05 Score=53.83 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=28.3
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCC--eecCceEEEEEecCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGR--DVDGSRIIVEFARGGP 42 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~--~l~Gr~I~Ve~a~~~~ 42 (269)
+|||||+|.+.++|+.| ++. .+.|..|.|.++....
T Consensus 42 ~g~afV~f~~~~~a~~~----~~~~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 42 RAFAFVTFADDQIAQSL----CGEDLIIKGISVHISNAEPKH 79 (88)
T ss_dssp CSCCEEECSCHHHHHHT----TTCEEEETTEEEEEECCCCCC
T ss_pred CCEEEEEECCHHHHHHH----hcCCceeCCEEEEEEecCCCC
Confidence 79999999999999754 444 4588899998887543
No 195
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.29 E-value=0.0002 Score=57.72 Aligned_cols=39 Identities=23% Similarity=0.243 Sum_probs=33.4
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeec---CceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVD---GSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~---Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|+.||..|+|..|. +..|.|.++...
T Consensus 47 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 88 (175)
T 3nmr_A 47 KGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSE 88 (175)
T ss_dssp EEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGG
T ss_pred ceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccc
Confidence 589999999999999999999998876 567777776643
No 196
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=97.26 E-value=0.00013 Score=42.03 Aligned_cols=19 Identities=53% Similarity=1.148 Sum_probs=15.2
Q ss_pred CCcccCCCCCCCCCcccCC
Q 024281 61 GRCFNCGIDGHWARDCKAG 79 (269)
Q Consensus 61 ~rc~~cG~~GH~ardC~~~ 79 (269)
..||+||..|||+++|+..
T Consensus 3 ~~Cf~CG~~GH~ardC~~~ 21 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEE 21 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC
T ss_pred CeeEeCCCCCcccccCCCc
Confidence 4688888888888888865
No 197
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=97.21 E-value=0.00022 Score=48.78 Aligned_cols=26 Identities=31% Similarity=0.765 Sum_probs=19.3
Q ss_pred CCCCCCCCcccCCCCCCCCCcccCCC
Q 024281 55 GPPPGSGRCFNCGIDGHWARDCKAGD 80 (269)
Q Consensus 55 ~~~~~~~rc~~cG~~GH~ardC~~~~ 80 (269)
++......||+||+.|||+++|+...
T Consensus 18 ~~~~~~~~C~~Cge~GH~ardCp~~~ 43 (56)
T 1u6p_A 18 RSQLDRDQCAYCKEKGHWAKDCPKKP 43 (56)
T ss_dssp STTCCTTBCSSSCCBSSCGGGCTTCC
T ss_pred CCCCCCCcceeCCCCCcccccCcCCc
Confidence 34445678888888888888888753
No 198
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.20 E-value=0.00026 Score=62.48 Aligned_cols=36 Identities=28% Similarity=0.226 Sum_probs=33.7
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+|||||+|.+.++|+.|| .|+|..|.|+.|.|.++.
T Consensus 81 ~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~ 116 (292)
T 2ghp_A 81 FRFARIEFARYDGALAAI-TKTHKVVGQNEIIVSHLT 116 (292)
T ss_dssp SEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEECC
T ss_pred cEEEEEEECCHHHHHHHH-HhCCcEeCCcEEEEEECC
Confidence 689999999999999999 599999999999999874
No 199
>2li8_A Protein LIN-28 homolog A; zinc finger, micro RNA, transcription-RNA complex; NMR {Homo sapiens}
Probab=97.10 E-value=0.00044 Score=49.97 Aligned_cols=41 Identities=22% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCCCCCcccCCC---------CCcccccCCCCCcccccCCCCCCCCCCCC
Q 024281 69 DGHWARDCKAGD---------WKNKCYRCGERGHIERNCQNSPKKLRRPR 109 (269)
Q Consensus 69 ~GH~ardC~~~~---------~k~~CyrCG~~Gh~~r~c~~~~r~~~r~r 109 (269)
.|||++||+.+. ....||+|++.||++++|+.......+..
T Consensus 2 ~gh~~rdc~~~~~~~~~~~~~r~~~C~~Cg~~GH~a~~C~~~~~~~~C~~ 51 (74)
T 2li8_A 2 SGLVPRGSHMPKGKSMQKRRSKGDRCYNCGGLDHHAKECKLPPQPKKCHF 51 (74)
T ss_dssp ----------CCCCCCCSCCSTTSCCTTTCCSSSCTTTCSSCCCCCCCTT
T ss_pred CccccCcCCCCCcCccccccCCCCcccccCCcCcCcccCCCCCCCCccCC
Confidence 589999999653 34679999999999999997543333333
No 200
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=97.07 E-value=0.00036 Score=41.19 Aligned_cols=20 Identities=55% Similarity=1.150 Sum_probs=16.4
Q ss_pred CCCcccCCCCCCCCCcccCC
Q 024281 60 SGRCFNCGIDGHWARDCKAG 79 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~ 79 (269)
...||+||..|||+++|+.+
T Consensus 6 ~~~C~nCgk~GH~ar~C~~p 25 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAP 25 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSS
T ss_pred CCEEEECCccccCHhHCccc
Confidence 46789999999988888875
No 201
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.05 E-value=0.00038 Score=60.95 Aligned_cols=39 Identities=23% Similarity=0.083 Sum_probs=33.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCC-Ceec---CceEEEEEecCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNG-RDVD---GSRIIVEFARGG 41 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG-~~l~---Gr~I~Ve~a~~~ 41 (269)
+|||||+|.+.++|..||..|++ ..+. ++.|.|.++...
T Consensus 137 ~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 137 TGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCE
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeecccc
Confidence 68999999999999999999954 4444 999999998753
No 202
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=96.87 E-value=0.00063 Score=54.42 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=31.6
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
.+|||||+|.+.++|+.||.. +..|+|+.|.|.++.
T Consensus 44 ~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 44 SRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAI 79 (167)
T ss_dssp CCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECC
T ss_pred ccceEEEEEccHHHHHHHHhc--ccccCCeEccccccc
Confidence 369999999999999999985 568999999888875
No 203
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.76 E-value=0.00083 Score=59.06 Aligned_cols=27 Identities=19% Similarity=0.415 Sum_probs=25.2
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCee
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDV 28 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l 28 (269)
.+|||||+|.+.++|+.||++|+|..|
T Consensus 178 ~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 178 SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 379999999999999999999999877
No 204
>1a6b_B Momulv, zinc finger protein NCP10; nucleocapsid protein, intercalation, nucleic acid, retrovirus, viral protein/DNA complex; HET: DNA; NMR {Synthetic} SCOP: g.40.1.1
Probab=96.57 E-value=0.0016 Score=41.45 Aligned_cols=25 Identities=32% Similarity=0.934 Sum_probs=21.4
Q ss_pred CcccccCCCCCcccccCCCCCCCCC
Q 024281 82 KNKCYRCGERGHIERNCQNSPKKLR 106 (269)
Q Consensus 82 k~~CyrCG~~Gh~~r~c~~~~r~~~ 106 (269)
...||.||+.|||+++|+...++.+
T Consensus 10 ~~~C~~Cgk~GH~ardCP~~~~~~r 34 (40)
T 1a6b_B 10 RDQCAYCKEKGHWAKDCPKKPRGPR 34 (40)
T ss_dssp SSSCSSSCCTTCCTTSCSSSCCCTT
T ss_pred CCeeeECCCCCcchhhCcCCcccCC
Confidence 6789999999999999999765543
No 205
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.45 E-value=0.0015 Score=44.52 Aligned_cols=21 Identities=33% Similarity=1.005 Sum_probs=17.3
Q ss_pred CCCCcccCCCCCCCCCcccCC
Q 024281 59 GSGRCFNCGIDGHWARDCKAG 79 (269)
Q Consensus 59 ~~~rc~~cG~~GH~ardC~~~ 79 (269)
....||+||..|||+++|+..
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~~ 26 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPTN 26 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSGG
T ss_pred CCCccccCCCcCcccccCCCC
Confidence 345799999999999999943
No 206
>1u6p_A GAG polyprotein; MLV, A-minor K-turn, stem loop, bulge, G-U mismatch, G-A MIS U mismatch, A-C mismatch, zinc finger, NC, viral protein-RN; HET: AP7; NMR {Moloney murine leukemia virus} SCOP: g.40.1.1 PDB: 1wwd_A 1wwe_A 1wwf_A 1wwg_A
Probab=96.26 E-value=0.0022 Score=43.76 Aligned_cols=25 Identities=28% Similarity=0.803 Sum_probs=21.1
Q ss_pred CCcccccCCCCCcccccCCCCCCCC
Q 024281 81 WKNKCYRCGERGHIERNCQNSPKKL 105 (269)
Q Consensus 81 ~k~~CyrCG~~Gh~~r~c~~~~r~~ 105 (269)
....||.||+.|||+++|+...++.
T Consensus 22 ~~~~C~~Cge~GH~ardCp~~~~~~ 46 (56)
T 1u6p_A 22 DRDQCAYCKEKGHWAKDCPKKPRGP 46 (56)
T ss_dssp CTTBCSSSCCBSSCGGGCTTCCCSS
T ss_pred CCCcceeCCCCCcccccCcCCcccc
Confidence 3678999999999999999866543
No 207
>1dsq_A Nucleic acid binding protein P14; CCHC type zinc finger, virus/viral protein; NMR {Mouse mammary tumor virus} SCOP: g.40.1.1
Probab=96.18 E-value=0.002 Score=36.95 Aligned_cols=20 Identities=40% Similarity=1.212 Sum_probs=17.3
Q ss_pred cccccCCCCCcccccCCCCC
Q 024281 83 NKCYRCGERGHIERNCQNSP 102 (269)
Q Consensus 83 ~~CyrCG~~Gh~~r~c~~~~ 102 (269)
..||.||+.||++++|+...
T Consensus 3 ~~Cf~CG~~GH~ardC~~~~ 22 (26)
T 1dsq_A 3 PVCFSCGKTGHIKRDCKEEX 22 (26)
T ss_dssp CBCTTTCCBSSCTTTTTCC-
T ss_pred CeeEeCCCCCcccccCCCcc
Confidence 47999999999999999753
No 208
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.16 E-value=0.0011 Score=53.02 Aligned_cols=38 Identities=21% Similarity=0.140 Sum_probs=34.9
Q ss_pred CCCeEEEEECCHHHHHHHHHHh-CCCeecCceEEEEEecC
Q 024281 2 KRDFAFVEFSDPRDADDARYSL-NGRDVDGSRIIVEFARG 40 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~l-dG~~l~Gr~I~Ve~a~~ 40 (269)
.+|++||+|.+.++|+.||+.| +|.+|+| .|.|.++..
T Consensus 12 l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~ 50 (150)
T 2i2y_A 12 LKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATK 50 (150)
T ss_dssp SCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTT
T ss_pred ccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccC
Confidence 3689999999999999999999 9999999 999998764
No 209
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.02 E-value=0.0062 Score=47.99 Aligned_cols=36 Identities=11% Similarity=0.182 Sum_probs=32.0
Q ss_pred eEEEEECC-HHHHHHHHHHh--CCCeecCceEEEEEecC
Q 024281 5 FAFVEFSD-PRDADDARYSL--NGRDVDGSRIIVEFARG 40 (269)
Q Consensus 5 fgfVeF~~-~~dA~~Ai~~l--dG~~l~Gr~I~Ve~a~~ 40 (269)
+|||.|.+ ..+|++||.+| ++.+|+|..+.|+...+
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~G 95 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEG 95 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCH
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCC
Confidence 79999999 89999999999 47899999999987653
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0094 Score=46.27 Aligned_cols=36 Identities=25% Similarity=0.247 Sum_probs=32.4
Q ss_pred CeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 4 GfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
+=|+|+|.+..+|.+|.-+|||.+|+|+.|++.-..
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv~ 98 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTIN 98 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECHH
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEecCHH
Confidence 458999999999999999999999999999987543
No 211
>1nc8_A Nucleocapsid protein; HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus 2} SCOP: g.40.1.1 PDB: 2di2_A
Probab=95.45 E-value=0.0067 Score=35.60 Aligned_cols=21 Identities=33% Similarity=0.987 Sum_probs=18.2
Q ss_pred CcccccCCCCCcccccCCCCC
Q 024281 82 KNKCYRCGERGHIERNCQNSP 102 (269)
Q Consensus 82 k~~CyrCG~~Gh~~r~c~~~~ 102 (269)
...||.||+.||++++|+...
T Consensus 6 ~~~C~nCgk~GH~ar~C~~pr 26 (29)
T 1nc8_A 6 VIRCWNCGKEGHSARQCRAPR 26 (29)
T ss_dssp CCBCTTTSCBSSCGGGCCSSS
T ss_pred CCEEEECCccccCHhHCcccc
Confidence 357999999999999998754
No 212
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=95.08 E-value=0.0083 Score=48.00 Aligned_cols=25 Identities=12% Similarity=0.007 Sum_probs=22.3
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCC
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGR 26 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~ 26 (269)
.+|||||+|.+.++|+.||..|++.
T Consensus 12 ~~G~~fV~f~~~~~A~~al~~~~~~ 36 (158)
T 2kn4_A 12 LKGETTTEAVDAATAEKVFKQYAND 36 (158)
T ss_dssp CEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHhHHHHHHhhccc
Confidence 3699999999999999999888764
No 213
>2ysa_A Retinoblastoma-binding protein 6; zinc finger, CCHC, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.97 E-value=0.0089 Score=40.59 Aligned_cols=20 Identities=40% Similarity=1.024 Sum_probs=17.8
Q ss_pred CCcccccCCCCCcccccCCC
Q 024281 81 WKNKCYRCGERGHIERNCQN 100 (269)
Q Consensus 81 ~k~~CyrCG~~Gh~~r~c~~ 100 (269)
....||+||+.||++++|+.
T Consensus 6 ~~~~C~kCGk~GH~~k~Cp~ 25 (55)
T 2ysa_A 6 SGYTCFRCGKPGHYIKNCPT 25 (55)
T ss_dssp SSCCCTTTCCTTSCGGGCSG
T ss_pred CCCccccCCCcCcccccCCC
Confidence 35689999999999999984
No 214
>2cqf_A RNA-binding protein LIN-28; CCHC zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.69 E-value=0.019 Score=39.77 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=23.0
Q ss_pred CCCcccCCCCCCCCCcccCCCCCcccccCCC
Q 024281 60 SGRCFNCGIDGHWARDCKAGDWKNKCYRCGE 90 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~~~k~~CyrCG~ 90 (269)
...||+|+..|||+++|+... ...++.+|.
T Consensus 29 ~~~C~~Cg~~GH~ar~Cp~~~-~~~~~~~g~ 58 (63)
T 2cqf_A 29 PKKCHFCQSISHMVASCPLKA-QQGPSAQGS 58 (63)
T ss_dssp SSCCTTTCCSSSCTTTCTGGG-CSCCCCSCC
T ss_pred CCccCCcCCcCCccCcCCCcc-ccCCccCCC
Confidence 468999999999999999864 334555543
No 215
>1cl4_A Protein (GAG polyprotein); nucleocapsid protein, RNA binding protein, retrovirus, viral protein; NMR {Mason-pfizer monkey virus} SCOP: g.40.1.1 PDB: 1dsv_A
Probab=94.39 E-value=0.021 Score=38.97 Aligned_cols=21 Identities=38% Similarity=0.953 Sum_probs=18.7
Q ss_pred CCCcccCCCCCCCCCcccCCC
Q 024281 60 SGRCFNCGIDGHWARDCKAGD 80 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~~ 80 (269)
...||+||..|||+++|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (60)
T 1cl4_A 30 PGLCPRCKRGKHWANECKSKT 50 (60)
T ss_dssp CCSCSSCSSCSSCSTTCCCTT
T ss_pred CcceeECCCCCCccCcCCCcc
Confidence 468999999999999999764
No 216
>2a51_A Nucleocapsid protein; sivlhoest, structure, NCP8, viral protein, metal binding protein; NMR {Synthetic}
Probab=94.05 E-value=0.026 Score=35.16 Aligned_cols=19 Identities=32% Similarity=0.810 Sum_probs=17.0
Q ss_pred CCCcccCCCCCCCCCcccC
Q 024281 60 SGRCFNCGIDGHWARDCKA 78 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~ 78 (269)
...||+||..||++++|+.
T Consensus 21 ~~~C~~Cg~~GH~~~~C~~ 39 (39)
T 2a51_A 21 QEGCWNCGSKEHRFAQCPK 39 (39)
T ss_dssp CSSCTTTCCSSSCTTTSCC
T ss_pred CCccccCCCCCCccCcCcC
Confidence 4689999999999999974
No 217
>2ihx_A Nucleocapsid (NC) protein; protein-RNA complex, viral protein/RNA complex; NMR {Rous sarcoma virus}
Probab=93.80 E-value=0.027 Score=38.72 Aligned_cols=21 Identities=38% Similarity=0.738 Sum_probs=18.6
Q ss_pred CCCcccCCCCCCCCCcccCCC
Q 024281 60 SGRCFNCGIDGHWARDCKAGD 80 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~~ 80 (269)
...||+|+..|||+++|+...
T Consensus 30 ~~~C~~Cg~~GH~ar~C~~~~ 50 (61)
T 2ihx_A 30 RERCQLCNGMGHNAKQCRKRD 50 (61)
T ss_dssp CSBCTTTCCBSSCGGGCCCCC
T ss_pred CCeeCCCCCCCCCcCCCcCCC
Confidence 468999999999999999764
No 218
>2bl6_A Nucleocapsid protein P11; lentivirus, polyprotein, core protein, retrovirus zinc finger-like domains; NMR {Equine infectious anemia virus}
Probab=93.69 E-value=0.023 Score=35.00 Aligned_cols=18 Identities=33% Similarity=1.114 Sum_probs=16.5
Q ss_pred CCcccCCCCCCCCCcccC
Q 024281 61 GRCFNCGIDGHWARDCKA 78 (269)
Q Consensus 61 ~rc~~cG~~GH~ardC~~ 78 (269)
..||+|+..||++++|+.
T Consensus 20 ~~C~~Cg~~GH~a~~C~~ 37 (37)
T 2bl6_A 20 KVCFKCKQPGHFSKQCRS 37 (37)
T ss_dssp TTCSSCCCTTGGGGTTCC
T ss_pred CeEccCCCcCCccCcCcC
Confidence 589999999999999974
No 219
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=92.96 E-value=0.067 Score=40.93 Aligned_cols=35 Identities=31% Similarity=0.487 Sum_probs=32.9
Q ss_pred EEEEECCHHHHHHHHHHhCCCeecCceEEEEEecC
Q 024281 6 AFVEFSDPRDADDARYSLNGRDVDGSRIIVEFARG 40 (269)
Q Consensus 6 gfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~~ 40 (269)
..|.|.+.++|..|-..||++.|+|..|+|.|++.
T Consensus 49 irv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 49 VRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp EEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred EEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 57999999999999999999999999999999984
No 220
>2ec7_A GAG polyprotein (PR55GAG); nucleocapsid protein, HIV-2, RNA recognition, zinc finger, viral protein; NMR {Human immunodeficiency virus type 2} SCOP: g.40.1.1
Probab=92.95 E-value=0.042 Score=36.05 Aligned_cols=20 Identities=30% Similarity=0.813 Sum_probs=17.8
Q ss_pred CCCcccCCCCCCCCCcccCC
Q 024281 60 SGRCFNCGIDGHWARDCKAG 79 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~ 79 (269)
...||+||..||++++|+..
T Consensus 27 ~~~C~~Cg~~GH~~~~C~~~ 46 (49)
T 2ec7_A 27 RQGCWKCGKTGHVMAKCPER 46 (49)
T ss_dssp CCSCSSSCCSSCCGGGCCSS
T ss_pred CCeeCcCCCcCCccCCCcCC
Confidence 46799999999999999974
No 221
>1a1t_A Nucleocapsid protein; stem-loop RNA, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: g.40.1.1 PDB: 1mfs_A 1f6u_A* 1aaf_A 2l4l_A 2exf_A 2jzw_A* 1bj6_A* 1esk_A 1q3y_A 1q3z_A 2e1x_A 2iwj_A
Probab=92.38 E-value=0.053 Score=36.28 Aligned_cols=20 Identities=35% Similarity=0.996 Sum_probs=17.9
Q ss_pred CCCcccCCCCCCCCCcccCC
Q 024281 60 SGRCFNCGIDGHWARDCKAG 79 (269)
Q Consensus 60 ~~rc~~cG~~GH~ardC~~~ 79 (269)
...||+||..||++++|+..
T Consensus 33 ~~~C~~Cg~~GH~~~~C~~~ 52 (55)
T 1a1t_A 33 KKGCWKCGKEGHQMKDCTER 52 (55)
T ss_dssp CCBCTTTCCBSSCGGGCSSS
T ss_pred CCEeCCCCCcCCccCCCcCc
Confidence 46899999999999999975
No 222
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=89.37 E-value=0.26 Score=39.82 Aligned_cols=33 Identities=24% Similarity=0.587 Sum_probs=25.2
Q ss_pred CcccccCCCCCcccccCCCCCCCCCCCCCCCCC
Q 024281 82 KNKCYRCGERGHIERNCQNSPKKLRRPRSYSRS 114 (269)
Q Consensus 82 k~~CyrCG~~Gh~~r~c~~~~r~~~r~rs~sRs 114 (269)
...||+|++.||++++|+..+....+.....-.
T Consensus 97 ~~~C~~Cg~~GH~a~~C~~~~~~~~C~~Cg~~G 129 (148)
T 3ts2_A 97 GDRCYNCGGLDHHAKECKLPPQPKKCHFCQSIN 129 (148)
T ss_dssp SCCCTTTCCSSCCGGGCCSCCCCCCCTTTCCSS
T ss_pred CCcccEeCCccchhhhCCCCCCCCcccccCCcC
Confidence 457999999999999999866555566555433
No 223
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=80.00 E-value=1.1 Score=31.30 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=27.5
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a~ 39 (269)
...|.||+... ..++.++.+|.+..++|+.|.|+.++
T Consensus 39 ~d~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 39 MDNASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp CSSCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred eCCcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 34688998865 45889999999999999999998764
No 224
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=67.35 E-value=7.1 Score=29.17 Aligned_cols=35 Identities=31% Similarity=0.386 Sum_probs=28.2
Q ss_pred eEEEEECCHHHHHHHHHHhCCCeecCc-----eEEEEEec
Q 024281 5 FAFVEFSDPRDADDARYSLNGRDVDGS-----RIIVEFAR 39 (269)
Q Consensus 5 fgfVeF~~~~dA~~Ai~~ldG~~l~Gr-----~I~Ve~a~ 39 (269)
-|||.|.+.+|+.+-.+.+||..|.+. ...||+|-
T Consensus 55 RAYI~F~~~edv~~F~~~f~g~~F~D~kg~~~~a~VE~AP 94 (97)
T 2l08_A 55 RAYINFRNPDDILLFRDRFDGYIFLDSKGLEYPAVVEFAP 94 (97)
T ss_dssp CCEEEESCHHHHHHHHHHSTTEEEECTTCCEEEEEEEECC
T ss_pred EEEEEeCCHHHHHHHHHHcCCcEEEeCCCCEeeeEEEecC
Confidence 489999999999999999999887543 35566663
No 225
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=64.19 E-value=9 Score=28.13 Aligned_cols=35 Identities=29% Similarity=0.328 Sum_probs=27.7
Q ss_pred eEEEEECCHHHHHHHHHHhCCCeecCc-----eEEEEEec
Q 024281 5 FAFVEFSDPRDADDARYSLNGRDVDGS-----RIIVEFAR 39 (269)
Q Consensus 5 fgfVeF~~~~dA~~Ai~~ldG~~l~Gr-----~I~Ve~a~ 39 (269)
-|+|.|.+.+++..-.+.+||..|.+. ...||+|-
T Consensus 47 RaYi~f~~~e~v~~f~~~~~g~~F~D~kg~~~~a~VE~AP 86 (91)
T 1uw4_A 47 RAYINFKNQEDIILFRDRFDGYVFLDNKGQEYPAIVEFAP 86 (91)
T ss_dssp EEEEEESSSHHHHHHHHHHTTCEEECTTCCEEECEEEECS
T ss_pred EEEEEeCCHHHHHHHHHHhCCcEEEcCCCCEeeeEEEEcC
Confidence 589999999999999999999887543 23466653
No 226
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=63.68 E-value=9.6 Score=29.51 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=26.0
Q ss_pred CeEEEEECCHHHHHHHHHHhCCCeecCc-eEEEEE
Q 024281 4 DFAFVEFSDPRDADDARYSLNGRDVDGS-RIIVEF 37 (269)
Q Consensus 4 GfgfVeF~~~~dA~~Ai~~ldG~~l~Gr-~I~Ve~ 37 (269)
++-.|.|.+..+|++|| ..||..|.|. .|-|..
T Consensus 60 NWihI~Y~s~~~A~rAL-~kNG~ii~g~~mIGV~p 93 (119)
T 1wwh_A 60 NWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKP 93 (119)
T ss_dssp SEEEEEESSHHHHHHHH-TTTTCEETTTEECEEEE
T ss_pred CeEEEEeCCHHHHHHHH-HhCCeEecCCEEEEEEE
Confidence 57899999999999999 5599999864 344443
No 227
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=60.60 E-value=10 Score=29.88 Aligned_cols=34 Identities=24% Similarity=0.245 Sum_probs=29.3
Q ss_pred CeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEe
Q 024281 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (269)
Q Consensus 4 GfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a 38 (269)
++-.|.|.+..+|.+|| ..||..|.|..|-|...
T Consensus 63 NWikItYds~~~A~rAL-~~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 63 SWTKITYDNPASAVDAL-LENGAVFNGVLLGVIPY 96 (132)
T ss_dssp TEEEEEBSSHHHHHHHH-TTTTCEETTEECEEEEC
T ss_pred cEEEEEcCCHHHHHHHH-HhCCeEeCcEEEEEEEC
Confidence 46789999999999999 67999999987777764
No 228
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=44.88 E-value=5.6 Score=22.47 Aligned_cols=17 Identities=41% Similarity=1.075 Sum_probs=14.1
Q ss_pred CcccCCCCCCCCCcccC
Q 024281 62 RCFNCGIDGHWARDCKA 78 (269)
Q Consensus 62 rc~~cG~~GH~ardC~~ 78 (269)
-|-.|...|||..+|..
T Consensus 5 YCe~CE~FGH~t~~C~d 21 (26)
T 2hqh_E 5 YCEICEMFGHWATNCND 21 (26)
T ss_dssp EETTTTEESSCGGGCCT
T ss_pred cchHHHHhCcccccCCc
Confidence 48889999999988864
No 229
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=44.67 E-value=1.1e+02 Score=28.19 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=12.4
Q ss_pred EECCHHHHHHHHHHhCCCeecCceE
Q 024281 9 EFSDPRDADDARYSLNGRDVDGSRI 33 (269)
Q Consensus 9 eF~~~~dA~~Ai~~ldG~~l~Gr~I 33 (269)
.|..+.+.+.|..+|.. |+|..|
T Consensus 147 aFV~F~~~e~A~~Ai~~--lng~~i 169 (437)
T 3pgw_S 147 AFIEYEHERDMHSAYKH--ADGKKI 169 (437)
T ss_pred EEEeeccHHHHHHHHHH--cCCCEE
Confidence 45555555555555543 555544
No 230
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.32 E-value=23 Score=26.70 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=25.5
Q ss_pred CeEEEEECCHHHHHHHHHHhCCCeecCceEEEEEe
Q 024281 4 DFAFVEFSDPRDADDARYSLNGRDVDGSRIIVEFA 38 (269)
Q Consensus 4 GfgfVeF~~~~dA~~Ai~~ldG~~l~Gr~I~Ve~a 38 (269)
+-|+|+|.+.+.|+..|.+ .-..|++..|.|.-.
T Consensus 48 ~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~ 81 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPA 81 (104)
T ss_dssp TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEEC
T ss_pred CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcC
Confidence 4589999999999888855 234577788888553
No 231
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=41.39 E-value=18 Score=26.26 Aligned_cols=23 Identities=13% Similarity=0.278 Sum_probs=20.9
Q ss_pred CCeEEEEECCHHHHHHHHHHhCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNG 25 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG 25 (269)
.||-||++.-..+...+|..+.|
T Consensus 50 PGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 50 KGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp TTEEEEEESSHHHHHHHHTTCTT
T ss_pred CCEEEEEEecchhHHHHHHCCCC
Confidence 69999999999999999988877
No 232
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=37.18 E-value=7.1 Score=30.92 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=0.0
Q ss_pred EEECCHHHHHHHHHHhCCCeec--CceEEEEEe
Q 024281 8 VEFSDPRDADDARYSLNGRDVD--GSRIIVEFA 38 (269)
Q Consensus 8 VeF~~~~dA~~Ai~~ldG~~l~--Gr~I~Ve~a 38 (269)
++|++.+||++||..|++..+. |+.+.+.+.
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~ 43 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSN 43 (165)
T ss_dssp ---------------------------------
T ss_pred hhhhccccccccchhhccccccccCCCCCCCcc
Confidence 7899999999999999998776 666766664
No 233
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=33.81 E-value=25 Score=26.41 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.2
Q ss_pred CCCeEEEEECCHHHHHHHHHHhCCCe
Q 024281 2 KRDFAFVEFSDPRDADDARYSLNGRD 27 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ldG~~ 27 (269)
.+||-|||=....++.+||+.|-+..
T Consensus 50 lkGyIyVEA~~~~~V~~ai~gi~~v~ 75 (106)
T 3h7h_B 50 VKGYIYVEAYKQTHVKQAIEGVGNLR 75 (106)
T ss_dssp CCSEEEEEESSHHHHHHHHTTCGGGG
T ss_pred CceEEEEEeCCHHHHHHHHhccccee
Confidence 37999999999999999998876643
No 234
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=29.97 E-value=17 Score=25.78 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=10.2
Q ss_pred CCCCeEEEEECCH
Q 024281 1 MKRDFAFVEFSDP 13 (269)
Q Consensus 1 lkrGfgfVeF~~~ 13 (269)
+.||||||+-++-
T Consensus 16 ~~KGfGFI~~ddg 28 (79)
T 2ytv_A 16 VKDQFGFINYEVG 28 (79)
T ss_dssp CCSSEEEESCCCS
T ss_pred ecccceeEeCCCC
Confidence 4689999998653
No 235
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=29.31 E-value=14 Score=23.22 Aligned_cols=18 Identities=39% Similarity=0.986 Sum_probs=15.4
Q ss_pred CCcccCCCCCCCCCcccC
Q 024281 61 GRCFNCGIDGHWARDCKA 78 (269)
Q Consensus 61 ~rc~~cG~~GH~ardC~~ 78 (269)
--|-.|-..|||..+|..
T Consensus 21 pYCd~CEvFGH~t~~Cnd 38 (42)
T 2pzo_E 21 PYCEICEMFGHWATNCND 38 (42)
T ss_dssp CEETTTTEESSCGGGCCT
T ss_pred cccccccccCcccccCCc
Confidence 359999999999999964
No 236
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=25.53 E-value=17 Score=25.50 Aligned_cols=38 Identities=16% Similarity=0.121 Sum_probs=20.3
Q ss_pred CCCeEEEEECCHHHHHHHHHHhC---C--CeecCceEEEEEec
Q 024281 2 KRDFAFVEFSDPRDADDARYSLN---G--RDVDGSRIIVEFAR 39 (269)
Q Consensus 2 krGfgfVeF~~~~dA~~Ai~~ld---G--~~l~Gr~I~Ve~a~ 39 (269)
.+|||||+-.+-+|.--=+..|. | ....|..|..+...
T Consensus 11 ~KGfGFI~~~dG~DvFvH~s~i~~~~g~~~l~~G~~V~F~~~~ 53 (74)
T 2kcm_A 11 AKKYGFIQGDDGESYFLHFSELLDKKDEGKLVKGSMVHFDPTP 53 (74)
T ss_dssp TTTEEEEEETTSCEECCCGGGSSCSGGGTTCCTTSEEEEEEEC
T ss_pred CCCEEEEecCCCceEEEEhhhcccCCCCCCCCCCCEEEEEEEE
Confidence 58999999876544321112222 2 22356665555544
No 237
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=24.45 E-value=38 Score=26.53 Aligned_cols=44 Identities=16% Similarity=0.109 Sum_probs=30.6
Q ss_pred EECCHHHHHHHHHH-hCCCeecCceEEEEEecCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCC
Q 024281 9 EFSDPRDADDARYS-LNGRDVDGSRIIVEFARGGPRGPGGSREYLGRGPPPGSGRCFNCGIDGH 71 (269)
Q Consensus 9 eF~~~~dA~~Ai~~-ldG~~l~Gr~I~Ve~a~~~~rg~g~~r~~~~R~~~~~~~rc~~cG~~GH 71 (269)
+..+++....|++. ..|+.+.|..|.|+..... ..|.+||....
T Consensus 37 s~v~~e~l~faf~~~~~gt~~e~A~L~i~~~p~~-------------------~~C~~CG~~~~ 81 (139)
T 3a43_A 37 QDVAEDIVKFAMEQLFAGTIAEGAEIEFVEEEAV-------------------FKCRNCNYEWK 81 (139)
T ss_dssp CCCCHHHHHHHHHHHHTTSTTTTCEEEEEEECCE-------------------EEETTTCCEEE
T ss_pred hhhhHHHHHHHHHHHHcCCcccCCEEEEEecCCc-------------------EECCCCCCEEe
Confidence 34566666666655 5677888988888877543 46999987644
No 238
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=24.10 E-value=53 Score=24.53 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=17.7
Q ss_pred eEEEEECCHHHHHHHHHHhC
Q 024281 5 FAFVEFSDPRDADDARYSLN 24 (269)
Q Consensus 5 fgfVeF~~~~dA~~Ai~~ld 24 (269)
-|||.|.+++.|..|+..|.
T Consensus 51 sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 51 SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp EEEEECSCHHHHHHHHHHHH
T ss_pred eEEEEecCHHHHHHHHHhcc
Confidence 48999999999999998763
No 239
>3p8b_B Transcription antitermination protein NUSG; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus} PDB: 3qqc_D
Probab=23.46 E-value=51 Score=25.83 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=21.5
Q ss_pred CCeEEEEECCHHHHHHHHHHhCCC
Q 024281 3 RDFAFVEFSDPRDADDARYSLNGR 26 (269)
Q Consensus 3 rGfgfVeF~~~~dA~~Ai~~ldG~ 26 (269)
.||-||++.-..+...+|..+.|.
T Consensus 43 PGYVfVe~~~~~~~~~~v~~t~gV 66 (152)
T 3p8b_B 43 KGYIFVEAPNKGVVDEAIRGIRHA 66 (152)
T ss_dssp CSEEEEEESSHHHHHHHHTTCTTE
T ss_pred CcEEEEEEEchHHHHHHHhCCCCE
Confidence 699999999999999999888874
No 240
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=23.30 E-value=17 Score=27.78 Aligned_cols=27 Identities=11% Similarity=0.083 Sum_probs=0.0
Q ss_pred CeEEEEECCHHH---HHHHHHHhCCCeecC
Q 024281 4 DFAFVEFSDPRD---ADDARYSLNGRDVDG 30 (269)
Q Consensus 4 GfgfVeF~~~~d---A~~Ai~~ldG~~l~G 30 (269)
||.|.+|.+.+| +..|+..|+|....|
T Consensus 2 ~~~~~~~~~~~~~~~~~~a~~~~~g~~~~g 31 (135)
T 2lea_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMG 31 (135)
T ss_dssp ------------------------------
T ss_pred CccccccccccCCCchhhhhhhccCCCCCC
Confidence 555555555555 555555565544433
Done!