BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 024283
         (269 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3DXL|A Chain A, Crystal Structure Of Aed7 From Aedes Aegypti
 pdb|3DY9|A Chain A, Crystal Structure Of Aed7 Potassium Bromide Soak
 pdb|3DYE|A Chain A, Crystal Structure Of Aed7-norepineprhine Complex
 pdb|3DZT|A Chain A, Aed7-Leukotriene E4 Complex
          Length = 303

 Score = 29.6 bits (65), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 36/153 (23%), Positives = 63/153 (41%), Gaps = 15/153 (9%)

Query: 110 RTYQYDPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEW-- 167
           RT  YDPV      +V     + YPS  ++  + +AY  A+K+ P      A   + +  
Sbjct: 57  RTGLYDPVAQKFDASVIQEQFKAYPSLGEKSKV-EAYANAVKQLPSTNNDCAAVFKAYDP 115

Query: 168 ---ARGQTASSLVEFPSK--EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA 222
              A   T+ +L     +  +G  E L KDI ++      F  ++++  G  +  +L   
Sbjct: 116 VHKAHKDTSKNLFHGNKELTKGLYEKLGKDIRQKKQSYFEFCENKYYPAGSDKRQQLCQI 175

Query: 223 TEPTVLEKL-------CAVLNVNKRSVDRDLDV 248
            + TVL+         C +  +   + D  LDV
Sbjct: 176 RQYTVLDDALFKEHTDCVMKGIRYITKDNQLDV 208


>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
           Complex With Peptide From Human Mcl1
          Length = 167

 Score = 27.7 bits (60), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 7/47 (14%)

Query: 197 ASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVD 243
           A G GN    R       +LLE A A +   ++KLC V +VN R ++
Sbjct: 2   AMGSGNSEADR-------QLLEAAKAGDVETVKKLCTVQSVNCRDIE 41


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.133    0.379 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,738,049
Number of Sequences: 62578
Number of extensions: 259776
Number of successful extensions: 628
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 2
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)