BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024283
(269 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7XAB8|THF1_SOLTU Protein THYLAKOID FORMATION1, chloroplastic OS=Solanum tuberosum
GN=THF1 PE=2 SV=1
Length = 293
Score = 380 bits (976), Expect = e-105, Method: Compositional matrix adjust.
Identities = 188/269 (69%), Positives = 226/269 (84%), Gaps = 5/269 (1%)
Query: 1 MASLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFRASSSSSRMII 60
MA++TSV+F++I Q S +RK +VSS+RS+ + FRFR++ V R+S+S+SR ++
Sbjct: 1 MAAVTSVSFSAITQ-SAERKSSVSSSRSI----DTFRFRSNFSFDSVNVRSSNSTSRFVV 55
Query: 61 QCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFAL 120
C S++ PTVA+TK+ FL YKRPIP++YNTVLQELIVQQHL RYK++YQYDPVFAL
Sbjct: 56 HCTSSSAADLPTVADTKLKFLTAYKRPIPTVYNTVLQELIVQQHLTRYKKSYQYDPVFAL 115
Query: 121 GFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP 180
GFVTVYD+LMEGYPSEEDR AIF+AYI ALKEDPEQYR DAQKLEEWAR Q A++LV+F
Sbjct: 116 GFVTVYDQLMEGYPSEEDRNAIFKAYIEALKEDPEQYRADAQKLEEWARTQNANTLVDFS 175
Query: 181 SKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKR 240
SKEGE+E + KDIA+RA K F YSR FAVGLFRLLELAN T+PT+LEKLCA LNVNK+
Sbjct: 176 SKEGEIENIFKDIAQRAGTKDGFCYSRLFAVGLFRLLELANVTDPTILEKLCAALNVNKK 235
Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
SVDRDLDVYRNLLSKL+QAKELLKEYV+R
Sbjct: 236 SVDRDLDVYRNLLSKLVQAKELLKEYVER 264
>sp|Q84PB7|THF1_ORYSJ Protein THYLAKOID FORMATION1, chloroplastic OS=Oryza sativa subsp.
japonica GN=THF1 PE=2 SV=1
Length = 287
Score = 375 bits (963), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/213 (81%), Positives = 196/213 (92%)
Query: 55 SSRMIIQCMSTATDVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQY 114
SR +++C++TA DVPPTVAETKMNFLK YKRPI SIY+TVLQEL+VQQHLMRYK TYQY
Sbjct: 43 GSRSVVRCVATAGDVPPTVAETKMNFLKSYKRPILSIYSTVLQELLVQQHLMRYKTTYQY 102
Query: 115 DPVFALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTAS 174
D VFALGFVTVYD+LMEGYPS EDR+AIF+AYITAL EDPEQYR DAQK+EEWAR Q +
Sbjct: 103 DAVFALGFVTVYDQLMEGYPSNEDRDAIFKAYITALNEDPEQYRADAQKMEEWARSQNGN 162
Query: 175 SLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAV 234
SLVEF SK+GE+E +LKDI+ERA GKG+FSYSRFFAVGLFRLLELANATEPT+L+KLCA
Sbjct: 163 SLVEFSSKDGEIEAILKDISERAQGKGSFSYSRFFAVGLFRLLELANATEPTILDKLCAA 222
Query: 235 LNVNKRSVDRDLDVYRNLLSKLLQAKELLKEYV 267
LN+NKRSVDRDLDVYRN+LSKL+QAKELLKEYV
Sbjct: 223 LNINKRSVDRDLDVYRNILSKLVQAKELLKEYV 255
>sp|Q9SKT0|THF1_ARATH Protein THYLAKOID FORMATION 1, chloroplastic OS=Arabidopsis
thaliana GN=THF1 PE=1 SV=1
Length = 300
Score = 369 bits (948), Expect = e-102, Method: Compositional matrix adjust.
Identities = 183/272 (67%), Positives = 219/272 (80%), Gaps = 18/272 (6%)
Query: 3 SLTSVAFTSIGQTSCQRKVNVSSTRSLVSNFEGFRFRTSLFCHCVRFR----ASSSSSRM 58
+++S++F ++GQ+ +SNF R S C +F S S+S+
Sbjct: 5 AISSLSFPALGQSD------------KISNFASSRPLASAIRICTKFSRLSLNSRSTSKS 52
Query: 59 IIQCMSTAT-DVPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPV 117
+I CMS T DVPP V+ETK FLK YKRPIPSIYNTVLQELIVQQHLMRYK+TY+YDPV
Sbjct: 53 LIHCMSNVTADVPP-VSETKSKFLKAYKRPIPSIYNTVLQELIVQQHLMRYKKTYRYDPV 111
Query: 118 FALGFVTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV 177
FALGFVTVYD+LMEGYPS++DR+AIF+AYI AL EDP+QYRIDAQK+EEWAR QT++SLV
Sbjct: 112 FALGFVTVYDQLMEGYPSDQDRDAIFKAYIEALNEDPKQYRIDAQKMEEWARSQTSASLV 171
Query: 178 EFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNV 237
+F SKEG++E +LKDIA RA K FSYSRFFAVGLFRLLELA+AT+PTVL+KLCA LN+
Sbjct: 172 DFSSKEGDIEAVLKDIAGRAGSKEGFSYSRFFAVGLFRLLELASATDPTVLDKLCASLNI 231
Query: 238 NKRSVDRDLDVYRNLLSKLLQAKELLKEYVDR 269
NK+SVDRDLDVYRNLLSKL+QAKELLKEYV+R
Sbjct: 232 NKKSVDRDLDVYRNLLSKLVQAKELLKEYVER 263
>sp|B0C3M8|THF1_ACAM1 Protein thf1 OS=Acaryochloris marina (strain MBIC 11017) GN=thf1
PE=3 SV=1
Length = 247
Score = 150 bits (378), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/209 (36%), Positives = 129/209 (61%), Gaps = 16/209 (7%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F ++ RP+ S+Y V++EL+V+ HL+R ++YDP+FALG T +DR M+
Sbjct: 6 TVSDTKRAFYSIHTRPVNSVYRRVVEELMVEMHLLRVNEDFRYDPIFALGVTTSFDRFMD 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEG-----EV 186
GY E D++AIF A A + DP Q + D Q+L E A+ ++A ++++ ++ E+
Sbjct: 66 GYQPENDKDAIFSAICKAQEADPVQMKKDGQRLTELAQSKSAQEMLDWITQAANSGGDEL 125
Query: 187 EGLLKDIAERASGKGNFSYSRFFAVGLFRLLELA--NATE-----PTVLEKLCAVLNVNK 239
+ L++IA+ F YSR FA+GLF LLEL+ N T+ L +C VLN+++
Sbjct: 126 QWQLRNIAQNPK----FKYSRLFAIGLFTLLELSEGNITQDEESLAEFLPNICTVLNISE 181
Query: 240 RSVDRDLDVYRNLLSKLLQAKELLKEYVD 268
+ +DL++YR L K+ Q ++ + + ++
Sbjct: 182 SKLQKDLEIYRGNLDKIAQVRQAMDDILE 210
>sp|Q116P5|THF1_TRIEI Protein thf1 OS=Trichodesmium erythraeum (strain IMS101) GN=thf1
PE=3 SV=1
Length = 239
Score = 144 bits (364), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 77/203 (37%), Positives = 120/203 (59%), Gaps = 9/203 (4%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F + RPI SIYN V++EL+V+ HL+ Y Y+P +ALG VT +DR M+
Sbjct: 6 TVSDTKKTFYHFHTRPINSIYNRVIEELLVEMHLISVNVDYSYNPFYALGVVTAFDRFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFP--SKEGEVEGL 189
GY +ED+ +IF A I +EDP +YR DA+ LE+ A +AS ++ + SK +
Sbjct: 66 GYSPQEDKTSIFNALIQGQEEDPNKYRSDAKGLEDLAGKISASDILSWICLSKNIDNTQY 125
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELANA-------TEPTVLEKLCAVLNVNKRSV 242
L+D S F YSR FA+GLF LLE+ + L+K+C LN+ + +
Sbjct: 126 LQDDLRAISENSKFRYSRLFAIGLFTLLEIVDTELIKEQEKRTEALKKICQSLNLVEEKL 185
Query: 243 DRDLDVYRNLLSKLLQAKELLKE 265
+D+D+Y + L ++ QA+ +++
Sbjct: 186 LKDIDLYLSNLERVAQARSAMED 208
>sp|B8HQ62|THF1_CYAP4 Protein thf1 OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)
GN=thf1 PE=3 SV=1
Length = 236
Score = 140 bits (352), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/209 (40%), Positives = 125/209 (59%), Gaps = 14/209 (6%)
Query: 70 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 129
P TV++TK F + RPI SIY V++EL+V+ HL+R +T+ YDPVFALG VT ++R
Sbjct: 4 PRTVSDTKRAFYHNHARPINSIYRRVVEELLVEIHLLRVNQTFVYDPVFALGVVTTFERF 63
Query: 130 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 189
M+GY D+ +IF A A + DP+Q + DAQ+L RGQ+ SL+++ S + G
Sbjct: 64 MQGYHPPADQTSIFNAICLAQELDPQQVQQDAQELLGRVRGQSLESLLDWISTAASLGGD 123
Query: 190 LKDIAERA-SGKGNFSYSRFFAVGLFRLLELANATEP----------TVLEKLCAVLNVN 238
+ RA + F YSR FAVGLF LLE A EP VL+++ V+++
Sbjct: 124 EQQNRLRAIASNPTFKYSRLFAVGLFTLLEQA---EPELGKDEARLLQVLQQVGEVMHLP 180
Query: 239 KRSVDRDLDVYRNLLSKLLQAKELLKEYV 267
+ +DL+ YR+ L K+ QA++ L++ V
Sbjct: 181 VEKMQKDLEQYRSNLEKMTQARKTLEDIV 209
>sp|Q8YZ41|THF1_NOSS1 Protein thf1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=thf1
PE=3 SV=1
Length = 233
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 75/201 (37%), Positives = 121/201 (60%), Gaps = 17/201 (8%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR ME
Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFME 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 185
GY E D+E+IF A A++++P++YR DA++L+ A+ + LV + S ++ +
Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLQAVAQSLPVNDLVAWLSQANHLQQDAD 125
Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT-------EPTVLEKLCAVLNVN 238
++ L+ IA NF YSR FA+GLF LLE +N L+ + A L+++
Sbjct: 126 LQAQLQAIA----NNSNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKSIAAGLHLS 181
Query: 239 KRSVDRDLDVYRNLLSKLLQA 259
+DL++YR+ L K+ QA
Sbjct: 182 DDKFSKDLELYRSNLDKMTQA 202
>sp|B2J353|THF1_NOSP7 Protein thf1 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102)
GN=thf1 PE=3 SV=1
Length = 235
Score = 139 bits (351), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 123/201 (61%), Gaps = 17/201 (8%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR M+
Sbjct: 6 TVSDTKRTFYNLHTRPINTIYRRVVEELMVEMHLLSVNIDFSYNPIYALGVVTTFDRFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV------EFPSKEGE 185
GY E D+E+IF A A+++DP+ YR DA++L+ A+G L+ + ++ +
Sbjct: 66 GYEPERDQESIFNALCRAIEQDPQHYRQDAERLQAIAKGLPVKDLIGWLGQTTYLDRDAD 125
Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANA----TEPTVLEKLCAV---LNVN 238
++ L+ IA NF Y+R FA+G+F LLE ++ E + E L A+ L+V+
Sbjct: 126 LQAQLQAIA----NNPNFKYNRLFAIGVFSLLEQSDPELVKDEKQLTEALKAIAAGLHVS 181
Query: 239 KRSVDRDLDVYRNLLSKLLQA 259
+++DL++YR+ L K+ QA
Sbjct: 182 DDKLNKDLELYRSNLDKMAQA 202
>sp|Q3M4B2|THF1_ANAVT Protein thf1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
GN=thf1 PE=3 SV=1
Length = 233
Score = 137 bits (346), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 74/201 (36%), Positives = 122/201 (60%), Gaps = 17/201 (8%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F L+ RPI +IY V++EL+V+ HL+ + Y+P++ALG VT +DR M+
Sbjct: 6 TVSDTKRTFYALHTRPINTIYRRVVEELMVEMHLLSVNVDFSYNPIYALGVVTTFDRFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPS------KEGE 185
GY E D+E+IF A A++++P++YR DA++L+ A+ + LV + S ++ +
Sbjct: 66 GYQPERDKESIFSAICQAVEQEPQRYRQDAERLKAVAQSLPVNDLVAWLSQANHLQQDAD 125
Query: 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT-------EPTVLEKLCAVLNVN 238
++ L+ IA NF YSR FA+GLF LLE +N L+ + A L+++
Sbjct: 126 LQAQLQAIA----SNPNFKYSRLFAIGLFTLLEQSNPDLVKDEKQRTEALKTIAAGLHLS 181
Query: 239 KRSVDRDLDVYRNLLSKLLQA 259
+ +DL++YR+ L K+ QA
Sbjct: 182 DDKLSKDLELYRSNLDKMTQA 202
>sp|Q5N664|THF1_SYNP6 Protein thf1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=thf1 PE=3 SV=2
Length = 254
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 116/207 (56%), Gaps = 10/207 (4%)
Query: 71 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 130
PTV+++K F Y RPI +Y V++EL+V+ HL+ ++ YDP+FALG VT +D M
Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64
Query: 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVE 187
Y E +F A A++++PEQYR DA + E RG + ++ ++ ++ G
Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAP 124
Query: 188 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT---EPTVLEKLCAVL----NVNKR 240
L++ + +G+ F YSR FA+GLF LLE A +P L+ + ++
Sbjct: 125 ELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSD 184
Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYV 267
+ +DLD+YR+ L K+ QA+ ++E +
Sbjct: 185 KLQKDLDLYRSNLEKMEQARITMEEAI 211
>sp|Q31MY4|THF1_SYNE7 Protein thf1 OS=Synechococcus elongatus (strain PCC 7942) GN=thf1
PE=3 SV=2
Length = 254
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 70/207 (33%), Positives = 116/207 (56%), Gaps = 10/207 (4%)
Query: 71 PTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLM 130
PTV+++K F Y RPI +Y V++EL+V+ HL+ ++ YDP+FALG VT +D M
Sbjct: 5 PTVSDSKRAFYAAYPRPINPLYRRVVEELLVEIHLLSVNTSFVYDPLFALGVVTAFDSFM 64
Query: 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKE---GEVE 187
Y E +F A A++++PEQYR DA + E RG + ++ ++ ++ G
Sbjct: 65 SSYRPIEAVGPLFTALTQAVRQNPEQYRHDANAIAEQVRGVGSDTIRQWLTEAEALGNAP 124
Query: 188 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT---EPTVLEKLCAVL----NVNKR 240
L++ + +G+ F YSR FA+GLF LLE A +P L+ + ++
Sbjct: 125 ELVRSSFQAIAGRSEFKYSRLFAIGLFSLLETAAPDLVQDPEALKTTVTAIAERFHLPSD 184
Query: 241 SVDRDLDVYRNLLSKLLQAKELLKEYV 267
+ +DLD+YR+ L K+ QA+ ++E +
Sbjct: 185 KLQKDLDLYRSNLEKMEQARITMEEAI 211
>sp|B7KI38|THF1_CYAP7 Protein thf1 OS=Cyanothece sp. (strain PCC 7424) GN=thf1 PE=3 SV=1
Length = 226
Score = 124 bits (312), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 71/208 (34%), Positives = 123/208 (59%), Gaps = 18/208 (8%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV+++K +F + RPI S+Y V++EL+V+ HL+ +QYDPV+ALG VT + R M+
Sbjct: 6 TVSDSKRDFYTKHTRPINSVYRRVVEELMVEMHLLSVNSDFQYDPVYALGVVTSFQRFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV-------EFPSKEG 184
GY + D+E+IF A ++ DP+QYR DA+++ E A+ +A L+ + S E
Sbjct: 66 GYRPDADKESIFNALCQSVGGDPQQYRQDAERMIESAKQLSAQQLLFNLESASDSSSGEN 125
Query: 185 EVEGLLKDIAERASGKGNFSYSRFFAVGLFRLL-----ELANATEP--TVLEKLCAVLNV 237
++ L IA + Y+R FA+G++ +L E+ TE V++++ VL++
Sbjct: 126 QILQTLIGIA----NAPKYKYTRLFAIGIYTILAETDPEMLKNTEKREEVVKQIAKVLHL 181
Query: 238 NKRSVDRDLDVYRNLLSKLLQAKELLKE 265
+ + +DLD+YR+ L K+ Q +++E
Sbjct: 182 PEEKMQKDLDLYRSNLEKMDQLLTVIEE 209
>sp|B7K277|THF1_CYAP8 Protein thf1 OS=Cyanothece sp. (strain PCC 8801) GN=thf1 PE=3 SV=1
Length = 235
Score = 123 bits (309), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 112/197 (56%), Gaps = 10/197 (5%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK +F + RPI SIY ++EL+V+ HL+ ++YDP++ALG V + + M+
Sbjct: 6 TVSDTKRDFYNHHTRPINSIYRRFIEELLVEMHLLCVNIDFRYDPIYALGVVASFQQFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEF--PSKEGEV-EG 188
GY EED+ +IF A A+ D E+YR +AQ L +G + S L+ ++ GE EG
Sbjct: 66 GYRPEEDKNSIFSALCQAVGGDGEKYRHEAQTLLNQVKGMSVSDLIAMGNSARTGEPGEG 125
Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT-------EPTVLEKLCAVLNVNKRS 241
+L + + + F YSR FA+GL+ ++ +A +LC LN++
Sbjct: 126 MLYNTLQAIAKNPQFKYSRLFAIGLYTMVMEIDADLLKEQDKRNETFSQLCNGLNLSSDK 185
Query: 242 VDRDLDVYRNLLSKLLQ 258
+ +DLD+YR+ + K+ Q
Sbjct: 186 LQKDLDLYRSNVDKMGQ 202
>sp|B1XHY6|THF1_SYNP2 Protein thf1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
PR-6) GN=thf1 PE=3 SV=1
Length = 254
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 72/206 (34%), Positives = 119/206 (57%), Gaps = 15/206 (7%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK +F + RPI SI+ V++EL+V+ HL+ ++YDP +ALG VT ++R M+
Sbjct: 6 TVSDTKRDFYTHHTRPINSIFRRVVEELLVEMHLLSVNADFRYDPFYALGVVTSFERFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL-- 189
GY E D+ +IFQ+ A+ D +Y+ DA L E A+ + + L+E ++ EG
Sbjct: 66 GYRPEADKVSIFQSMCQAIGGDANRYKEDAMALVELAKRCSGTQLIECFRQDVPPEGAQE 125
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEK----------LCAVLNVNK 239
L + E + +F YSR FA+G++ L +EP +LE + A LN+ +
Sbjct: 126 LWEKIEAIAKNDHFKYSRLFAIGVYTFL---GESEPQLLEDTEKRDEMLTTVTAGLNLPE 182
Query: 240 RSVDRDLDVYRNLLSKLLQAKELLKE 265
+ +DLD+YR+ L K+ Q E+L++
Sbjct: 183 EKMKKDLDLYRSNLEKMNQVLEVLED 208
>sp|Q8DJT8|THF1_THEEB Protein thf1 OS=Thermosynechococcus elongatus (strain BP-1) GN=thf1
PE=3 SV=1
Length = 222
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 79/206 (38%), Positives = 118/206 (57%), Gaps = 16/206 (7%)
Query: 70 PPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRL 129
P TV++TK F + RPI SIY ++EL+V+ HL+R ++Y P+FALG VT +D+
Sbjct: 4 PRTVSDTKRAFYAAHTRPIHSIYRRFIEELLVEIHLLRVNVDFRYSPLFALGVVTAFDQF 63
Query: 130 MEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 189
MEGY E DR+ IF A A + +P+Q + DA +++ + L E S G+
Sbjct: 64 MEGYQPEGDRDRIFHALCVAEEMNPQQLKEDAASWQQYQGRPLSQILDELNS--GQPSAP 121
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLL-ELANATEPTV-----LEKLCAVLNVNKRSVD 243
L + +GK YSR AVGL+ L ELA E T+ L++L V+ + V
Sbjct: 122 LNSLNH--TGK----YSRLHAVGLYAFLQELAG--EVTIHLNETLDQLAPVIPLPIEKVK 173
Query: 244 RDLDVYRNLLSKLLQAKELLKEYVDR 269
RDL++YR+ L K+ QA+ L+KE V++
Sbjct: 174 RDLELYRSNLDKINQARSLMKELVEQ 199
>sp|Q7NKS7|THF1_GLOVI Protein thf1 OS=Gloeobacter violaceus (strain PCC 7421) GN=thf1
PE=3 SV=1
Length = 228
Score = 120 bits (300), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/205 (36%), Positives = 116/205 (56%), Gaps = 11/205 (5%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV+++K F Y RP+ SIY V+ EL+V+ HL+ + +++DP+FA G +T Y LME
Sbjct: 6 TVSDSKRAFFAAYPRPVNSIYRRVIDELLVEVHLLITNQDFRHDPLFATGLLTAYQALME 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEV-EGLL 190
GY E R+AI +A TAL+ EQ DA + A A ++E + + E +G L
Sbjct: 66 GYTPVEQRDAILRALCTALELSYEQLHTDAAQWRAIAAELPAQEVLEVMAGKREAGDGRL 125
Query: 191 KDIAERASGKGN---FSYSRFFAVGLFRLLELAN----ATEPTVLEKL---CAVLNVNKR 240
K + + +G N F YSR F++GL +LE A +E LE+L C L ++
Sbjct: 126 KAMGDTLAGIANAERFKYSRLFSLGLANILEQAGRAAAMSEKDRLERLQQICTYLKLDYN 185
Query: 241 SVDRDLDVYRNLLSKLLQAKELLKE 265
V RDLD + ++L ++ ++KE++ E
Sbjct: 186 RVKRDLDFFHSVLERIKRSKEVVDE 210
>sp|P0C1D1|THF1_SYNJB Protein thf1 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=thf1
PE=3 SV=1
Length = 239
Score = 116 bits (290), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 112/206 (54%), Gaps = 11/206 (5%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T++ TK F Y RPI ++Y V++EL+V+ HL T+ YDP FALG VT+YD LME
Sbjct: 6 TLSATKAAFFSAYPRPINAVYRRVVEELLVELHLTTVNSTFVYDPFFALGLVTLYDGLME 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVE--GL 189
Y E REAIF A AL PE R +A+ L E ++ + E E G
Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMGSGDPRQRLDLLCLKPEAEDVGG 125
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELANAT---EPT-----VLEKLCAVLNVNKRS 241
LK I ER + + ++YSR AVGL+ E+ + EP LE + + L +
Sbjct: 126 LKAILERMT-QPPYAYSRVLAVGLYTAYEVVAKSLYEEPEERTRRFLENVVSKLPFSTER 184
Query: 242 VDRDLDVYRNLLSKLLQAKELLKEYV 267
V +DL++YR+ L ++ QA+ +++E V
Sbjct: 185 VRKDLELYRSSLDRMKQARAVVEEMV 210
>sp|B1WNF0|THF1_CYAA5 Protein thf1 OS=Cyanothece sp. (strain ATCC 51142) GN=thf1 PE=3
SV=1
Length = 242
Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 107/194 (55%), Gaps = 8/194 (4%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++TK F + RPI SIY ++EL+V+ HL+ ++YDP++ALG VT ++R M+
Sbjct: 6 TVSDTKRKFYGYHTRPINSIYRRFVEELLVEMHLLSVNVDFKYDPIYALGVVTSFERFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY E D+ +IF A A+ + EQY +A+ L A+G + + E +EG +G+L
Sbjct: 66 GYSPESDKTSIFNALCQAVDGNSEQYHQEAEALINEAKGLSITEFKEKLGQEGG-DGILW 124
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLL-----ELANATEP--TVLEKLCAVLNVNKRSVDR 244
+ F YSR F VGL+ LL +L + ++++ L + + +
Sbjct: 125 GTCGAIAQNPKFKYSRLFGVGLYTLLMEIDPDLVKEEDKRNQTIKEVSDALQFSSDKLQK 184
Query: 245 DLDVYRNLLSKLLQ 258
DLD+YR+ L K+ Q
Sbjct: 185 DLDLYRSNLDKMQQ 198
>sp|Q2JSQ3|THF1_SYNJA Protein thf1 OS=Synechococcus sp. (strain JA-3-3Ab) GN=thf1 PE=3
SV=1
Length = 239
Score = 113 bits (283), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 83/209 (39%), Positives = 112/209 (53%), Gaps = 17/209 (8%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T++ TK F Y RPI + Y V++EL+V+ HL + YDP FALG VT+YD LME
Sbjct: 6 TLSATKAAFFSAYPRPINAAYRRVVEELLVELHLTTVNSAFVYDPFFALGLVTLYDSLME 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARG----QTASSLVEFPSKEGEVE 187
Y E REAIF A AL PE R +A+ L E R Q + L P E E
Sbjct: 66 AYHPPEQREAIFNALCKALHLKPEVLRKNARDLLELMRSGDPVQRYNLLCLKP--EAEDV 123
Query: 188 GLLKDIAERASGKGNFSYSRFFAVGLFRLLELANAT----EPT-----VLEKLCAVLNVN 238
G LK I +R + + ++YSR AVGL+ E A AT EP LE + L +
Sbjct: 124 GGLKAILQRMT-QPPYAYSRVLAVGLYTAYE-AVATSLYKEPEERTRHFLEDVIGNLPFS 181
Query: 239 KRSVDRDLDVYRNLLSKLLQAKELLKEYV 267
V +DL++YR+ L +L QA+ +++E V
Sbjct: 182 PERVKKDLELYRSNLDRLKQARAIVEEMV 210
>sp|P73956|THF1_SYNY3 Protein thf1 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=thf1 PE=3 SV=1
Length = 240
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/202 (33%), Positives = 109/202 (53%), Gaps = 8/202 (3%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV++ K F Y RPI SIY ++EL+V+ HL+ + YDP+FALG VT ++ M+
Sbjct: 6 TVSDAKRKFFTHYSRPISSIYRRFVEELLVEMHLLSVNIDFTYDPIFALGIVTSFNSFMQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLV-EFPSKEGEVEGLL 190
GY E AIF A + ++P+Q R DA+ + A + V S++ + LL
Sbjct: 66 GYQPAEQLPAIFNALCHGVDQNPDQVRQDAKNVAASAHHIGLDAWVTAAASEQASGDNLL 125
Query: 191 KDIAERASGKGNFSYSRFFAVGLFRLL-----ELANATEP--TVLEKLCAVLNVNKRSVD 243
+ + F YSR FA+GL+ LL E+ + E L +L +L+++ V
Sbjct: 126 LNTLTGIHQRHKFKYSRLFAIGLYTLLADQDPEVKDNDEKRQDYLTRLSELLDLSLDKVV 185
Query: 244 RDLDVYRNLLSKLLQAKELLKE 265
+DLD+YR+ L K+ Q ++L++
Sbjct: 186 KDLDLYRSNLEKVDQLLKVLED 207
>sp|Q7V7R3|THF1_PROMM Protein thf1 OS=Prochlorococcus marinus (strain MIT 9313) GN=thf1
PE=3 SV=1
Length = 243
Score = 99.4 bits (246), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T+A++K F + IPS+Y EL+V+ HL+ +++ + D +FA+G V+D
Sbjct: 6 TIADSKRAFNHDFPHVIPSLYRRTTDELLVELHLLSHQKHFHPDALFAIGLSQVFDVFTS 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGE--VEGL 189
GY E + +F A + DP R AQ+ E RG + + ++G+ E L
Sbjct: 66 GYRPEAHVKTLFDALCRSCGFDPNALRKQAQQTLESVRGHDLEEVQGWIQQQGKGAPEAL 125
Query: 190 LKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAV-------LNVNKRSV 242
K + A G F YSR AVGL LL A E + EKL + + +K V
Sbjct: 126 AKALRNTA-GSTTFHYSRLMAVGLLSLLASAQGDESSDPEKLSQIAHELSESVGFSKARV 184
Query: 243 DRDLDVYRNLLSKLLQAKELLKEYVD 268
++DL++Y++ L K+ QA EL ++ ++
Sbjct: 185 EKDLNLYKSNLEKMAQAVELTEQILE 210
>sp|Q3AY05|THF1_SYNS9 Protein thf1 OS=Synechococcus sp. (strain CC9902) GN=thf1 PE=3 SV=1
Length = 215
Score = 78.2 bits (191), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/204 (25%), Positives = 103/204 (50%), Gaps = 22/204 (10%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T+A++K F + + I +Y + EL+V+ HL+ ++ +++ P+FA+G TV+D
Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSSFKTTPLFAVGLCTVFDTFSA 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY EE + A ++ D +R ++++ + A+ ++ V+ +
Sbjct: 66 GYRPEEHITGLLDALCSSNGYDANTFRKESKRCIDAAKTES-------------VDAMDS 112
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLLELA--NATEP--TVLEKLC----AVLNVNKRSVD 243
+A + G+G+ YSR A+G+ RL E A +A +P L K C LN V+
Sbjct: 113 HLAGQKLGEGSH-YSRLMAIGVLRLFEEAKGDADQPDEADLRKRCKELSTALNFPAERVE 171
Query: 244 RDLDVYRNLLSKLLQAKELLKEYV 267
+DL ++ + ++ A EL++E +
Sbjct: 172 KDLSLFASNSERMSAAIELVQETI 195
>sp|Q7U6N6|THF1_SYNPX Protein thf1 OS=Synechococcus sp. (strain WH8102) GN=thf1 PE=3 SV=1
Length = 212
Score = 73.6 bits (179), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/199 (27%), Positives = 95/199 (47%), Gaps = 19/199 (9%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T+A++K F + + I +Y + EL+V+ HL+ ++ T+Q + +FA+G TV++R +
Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRIADELLVELHLLSHQATFQANSLFAVGLKTVFERFTQ 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY E A+ A ++ D EQ + AQ + A G + + + ++ +G
Sbjct: 66 GYRPMEHPAALLSALCSSNGFDDEQLKQAAQHCLQDAEGHSDDAFQSWLKEQSLSDGA-- 123
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVL-----EKLCAVLNVNKRSVDRDL 246
YSR AVGL LLE ++ KL L + V++DL
Sbjct: 124 ------------HYSRLMAVGLLALLEASSDESDASSLRQRAVKLSVDLGLPAERVEKDL 171
Query: 247 DVYRNLLSKLLQAKELLKE 265
V+ + ++ QA EL++E
Sbjct: 172 TVFSSNSERMEQAVELMQE 190
>sp|Q46L45|THF1_PROMT Protein thf1 OS=Prochlorococcus marinus (strain NATL2A) GN=thf1
PE=3 SV=1
Length = 199
Score = 72.4 bits (176), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 19/202 (9%)
Query: 69 VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDR 128
V T++++K +F K + IP+IY + EL+V+ HL+ +++ ++ D +F+ G V+ +
Sbjct: 3 VRATISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFSK 62
Query: 129 LMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 188
GY E +F A +P + +++L A+ T L F SK
Sbjct: 63 FTSGYKPSEHATKLFDAICNCNGFNPTEINNSSEQLVSNAKSFTKEDLNSFLSKTNN--- 119
Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRS------- 241
KG YSR A+G+++L+ + E L +N +S
Sbjct: 120 ---------DNKGYDYYSRINAIGIYKLVSEMPLFKEVKEEDLNKEINDISKSLGYQYSR 170
Query: 242 VDRDLDVYRNLLSKLLQAKELL 263
V++D+ +Y++ + K+ QA E++
Sbjct: 171 VEKDISMYKSNIEKMKQALEII 192
>sp|Q3AJN7|THF1_SYNSC Protein thf1 OS=Synechococcus sp. (strain CC9605) GN=thf1 PE=3 SV=1
Length = 215
Score = 72.0 bits (175), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 55/204 (26%), Positives = 101/204 (49%), Gaps = 22/204 (10%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T+A++K F + + I +Y + EL+V+ HL+ ++ ++ + +F++G TV+D ++
Sbjct: 6 TIADSKRAFHQAFPHVIAPLYRRLADELLVELHLLSHQSRFEANELFSVGLCTVFDTFIK 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY E +A+F+A ++ D + R L E A+G+ SL ++ S EG
Sbjct: 66 GYRPEAQTDALFRALCSSNGFDAAKLRKTYASLVEQAKGKDPESLKDWLSSHALKEG--- 122
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLLE------LANATEPTVLE--KLCAVLNVNKRSVD 243
YSR AVGL LL+ + TE V + +L L + V+
Sbjct: 123 -----------SHYSRLMAVGLMSLLKAAAADATDSDTEAIVKQSKELAEGLGLPTDRVE 171
Query: 244 RDLDVYRNLLSKLLQAKELLKEYV 267
+DL ++ + ++ QA EL++E +
Sbjct: 172 KDLTLFGSNSERMDQAVELVEETI 195
>sp|A9BAB2|THF1_PROM4 Protein thf1 OS=Prochlorococcus marinus (strain MIT 9211) GN=thf1
PE=3 SV=1
Length = 221
Score = 71.6 bits (174), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 106/203 (52%), Gaps = 18/203 (8%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV+E+K F K + +P++Y ++ ELIV+ +L++ + + D VFA+G +++ +
Sbjct: 6 TVSESKAIFHKEFPFVVPAVYRRLVDELIVELNLLKNQERFVADGVFAIGLTSIFLDFTK 65
Query: 132 GYPSEEDREAIFQAYITAL---KEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 188
GY E + + +A + EQ ++A+KL SL+ +++ E E
Sbjct: 66 GYKPENQKGILLEAICKCTGFSASNLEQIALEAKKLANGLNTNEIKSLITDNNRD-EKES 124
Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLLELAN-------ATEPTVLEKLCAVLNVNKRS 241
K I + N YSR A+G+++L+++ + ATE + L+ L K
Sbjct: 125 TYKLINK------NNHYSRIIAIGIYKLVDMQSNGFNKEEATENSYLD-LVNNFGYTKER 177
Query: 242 VDRDLDVYRNLLSKLLQAKELLK 264
V++D+++Y++ L K+ +A EL++
Sbjct: 178 VEKDVNLYKSSLDKIEKALELIE 200
>sp|A2C211|THF1_PROM1 Protein thf1 OS=Prochlorococcus marinus (strain NATL1A) GN=thf1
PE=3 SV=1
Length = 199
Score = 70.9 bits (172), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 95/202 (47%), Gaps = 19/202 (9%)
Query: 69 VPPTVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDR 128
V T++++K +F K + IP+IY + EL+V+ HL+ +++ ++ D +F+ G V+ +
Sbjct: 3 VRATISDSKSDFHKEFPYVIPAIYRKLADELLVELHLLSHQKNFKKDSIFSTGLKEVFCK 62
Query: 129 LMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEG 188
GY E +F A +P + +++L A+ T L F SK
Sbjct: 63 FTSGYKPSEHVTKLFDAICNCNGFNPTEINNSSEQLVSNAKSFTKEDLNSFLSKTNN--- 119
Query: 189 LLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRS------- 241
KG YSR A+G+++L+ + E L +N +S
Sbjct: 120 ---------DNKGYDYYSRINAIGIYKLVSEMPLFKEVKEEDLNKEINDISKSLGYQYSR 170
Query: 242 VDRDLDVYRNLLSKLLQAKELL 263
V++D+ +Y++ + K+ QA E++
Sbjct: 171 VEKDISMYKSNIEKMKQALEII 192
>sp|Q7VC23|THF1_PROMA Protein thf1 OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=thf1 PE=3 SV=1
Length = 214
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 97/199 (48%), Gaps = 9/199 (4%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
T++++K F K + IP +Y VL E +V+ +L+ + ++ D +F+ G + ++R
Sbjct: 6 TISDSKGLFHKEFPYVIPPVYRKVLDEYLVELNLLSNQSNFKIDTIFSYGLIISFERFTV 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY + I ++ + D + + + +++ + ++ + E++ +
Sbjct: 66 GYEPDSHISKILESLCNSCNIDIKAIKEYSNNIKKLINEKGIKEIINILT--AEIKKSVG 123
Query: 192 DIA-ERASGKGNFSYSRFFAVGLFRLLELAN-----ATEPTVLEKLCAVLNVNKRSVDRD 245
IA SGK + YSR A+G++ L+ N + ++ + L +K V++D
Sbjct: 124 GIALSNQSGKDKY-YSRLHAIGIYELISNINEDKKEGDDKEIISECVEALGFSKDRVEKD 182
Query: 246 LDVYRNLLSKLLQAKELLK 264
++ Y+N + K+ + EL+K
Sbjct: 183 INQYKNSMEKIKEMMELIK 201
>sp|Q7V1W1|THF1_PROMP Protein thf1 OS=Prochlorococcus marinus subsp. pastoris (strain
CCMP1986 / MED4) GN=thf1 PE=3 SV=2
Length = 202
Score = 65.5 bits (158), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 102/203 (50%), Gaps = 26/203 (12%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV+++K F + + IP +Y ++ E++V+ +L+ ++ + D +F +G + L +
Sbjct: 6 TVSDSKKLFHEQFPYVIPGLYKRIVDEMLVELNLLNHQNEFIQDDLFCVGLTETFKELTK 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY EE +F++ + +P++ + ++K E + ++ E+ LLK
Sbjct: 66 GYKPEEHLRVLFESLCNSSNFEPKKIKEASKKTLEVYKDKSLK----------EISILLK 115
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLLELANATE---------PTVLEKLCAVLNVNKRSV 242
++ N SR +G++ L +ANAT+ ++ + LN++
Sbjct: 116 QKSD-----SNLYSSRILNLGIY--LIIANATDFKDIKDPEKNKIISDIINKLNLSFNKA 168
Query: 243 DRDLDVYRNLLSKLLQAKELLKE 265
++D+ +Y++ + K+ QAKELL+E
Sbjct: 169 EKDIGIYKSSILKMEQAKELLQE 191
>sp|Q31BD6|THF1_PROM9 Protein thf1 OS=Prochlorococcus marinus (strain MIT 9312) GN=thf1
PE=3 SV=2
Length = 201
Score = 61.2 bits (147), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 107/201 (53%), Gaps = 22/201 (10%)
Query: 72 TVAETKMNFLKLYKRPIPSIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLME 131
TV+++K F + + IP +Y ++ E++V+ +L+ ++ ++ D +F +G + L +
Sbjct: 6 TVSDSKKLFHEEFPYVIPGLYKRIVDEILVELNLLNHQNEFKQDYLFCIGLTETFKELTK 65
Query: 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLK 191
GY E+ + +F++ + +A++++E ++ S EF K + +LK
Sbjct: 66 GYKPEKHLDLLFESLCIST-------NFEAKEIKEISK----ISQKEFSDKSSK--DILK 112
Query: 192 DIAERASGKGNFSYSRFFAVGLFRLL-------ELANATEPTVLEKLCAVLNVNKRSVDR 244
+ E+++ K SR +G++ L+ E + + ++ + L++++ ++
Sbjct: 113 LLKEKSNSK--LYPSRILNLGIYILISNSQDFKENNDIEKNKMISDIFEKLSLSRNKAEK 170
Query: 245 DLDVYRNLLSKLLQAKELLKE 265
D+ +Y++ +SK+ QAKEL++E
Sbjct: 171 DIGIYKSSISKMEQAKELIQE 191
>sp|Q5XJ34|KC15L_DANRE BTB/POZ domain-containing protein kctd15-like OS=Danio rerio
GN=kctd15l PE=1 SV=1
Length = 257
Score = 32.0 bits (71), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 215 RLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 265
R+ L N TEP VL+ L +DRD +++R +LS L +K LL E
Sbjct: 55 RISRLFNGTEPIVLDSL-----KQHYFIDRDGEIFRYILSYLRTSKLLLPE 100
>sp|E9Q557|DESP_MOUSE Desmoplakin OS=Mus musculus GN=Dsp PE=3 SV=1
Length = 2883
Score = 31.6 bits (70), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 35/86 (40%), Gaps = 15/86 (17%)
Query: 184 GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVD 243
EV LKD+ G + Y + GLF+ LE N L LC+V
Sbjct: 732 AEVLNQLKDMLANFRGSEKYCYLQNEIFGLFQKLENINGVSDGYLNSLCSV--------- 782
Query: 244 RDLDVYRNLLSKLLQAKELLKEYVDR 269
R LL +LQ +++LK Y R
Sbjct: 783 ------RALLQAILQTEDMLKVYEAR 802
>sp|P15924|DESP_HUMAN Desmoplakin OS=Homo sapiens GN=DSP PE=1 SV=3
Length = 2871
Score = 31.2 bits (69), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 184 GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNKRSVD 243
EV LKD+ G + Y + GLF+ LE N L LC V
Sbjct: 720 AEVLNQLKDMLANFRGSEKYCYLQNEVFGLFQKLENINGVTDGYLNSLCTV--------- 770
Query: 244 RDLDVYRNLLSKLLQAKELLKEYVDR 269
R LL +LQ +++LK Y R
Sbjct: 771 ------RALLQAILQTEDMLKVYEAR 790
>sp|Q6P3P4|KCD15_XENTR BTB/POZ domain-containing protein kctd15 OS=Xenopus tropicalis
GN=kctd15 PE=2 SV=1
Length = 255
Score = 31.2 bits (69), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 215 RLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 265
R+ L N TEP VL+ L +DRD +++R +LS L +K LL E
Sbjct: 55 RISRLFNGTEPIVLDSL-----KQHYFIDRDGEIFRYILSFLRTSKLLLPE 100
>sp|Q6DCX3|KCD15_XENLA BTB/POZ domain-containing protein kctd15 OS=Xenopus laevis
GN=kctd15 PE=2 SV=1
Length = 255
Score = 30.8 bits (68), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 215 RLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 265
R+ L N TEP VL+ L +DRD +++R +LS L +K LL E
Sbjct: 55 RISRLFNGTEPIVLDSL-----KQHYFIDRDGEIFRYILSFLRTSKLLLPE 100
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.133 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,283,743
Number of Sequences: 539616
Number of extensions: 3458296
Number of successful extensions: 9923
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 9842
Number of HSP's gapped (non-prelim): 53
length of query: 269
length of database: 191,569,459
effective HSP length: 115
effective length of query: 154
effective length of database: 129,513,619
effective search space: 19945097326
effective search space used: 19945097326
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)