Query 024283
Match_columns 269
No_of_seqs 82 out of 84
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:34:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/024283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g80_A Protein B2; RNA-binding 82.8 1.6 5.4E-05 34.5 4.6 28 233-260 49-76 (97)
2 2az0_A B2 protein; protein-RNA 72.5 5.2 0.00018 30.2 4.6 36 225-260 12-52 (73)
3 1xn7_A Hypothetical protein YH 62.9 2.5 8.7E-05 31.4 1.2 25 224-248 15-39 (78)
4 2ou3_A Tellurite resistance pr 60.9 63 0.0022 25.9 10.2 96 131-250 43-141 (161)
5 2kj1_A BM2 protein; cytoplasmi 60.4 12 0.00042 28.6 4.6 32 236-267 18-49 (89)
6 1qgp_A Protein (double strande 58.7 4.6 0.00016 29.5 1.9 35 212-246 18-52 (77)
7 2k02_A Ferrous iron transport 54.1 3.2 0.00011 31.8 0.4 24 225-248 16-39 (87)
8 1qbj_A Protein (double-strande 52.6 8 0.00027 28.8 2.4 34 213-246 15-48 (81)
9 3r8s_N 50S ribosomal protein L 49.5 11 0.00039 30.7 3.0 77 135-212 13-101 (120)
10 2zjr_K 50S ribosomal protein L 48.3 12 0.00042 30.3 3.0 77 135-212 13-101 (116)
11 3gl5_A Putative DSBA oxidoredu 47.3 1.3E+02 0.0045 25.5 11.0 99 142-247 57-160 (239)
12 2jt1_A PEFI protein; solution 45.9 11 0.00039 27.8 2.3 23 225-247 24-46 (77)
13 3lsg_A Two-component response 43.9 47 0.0016 24.0 5.5 41 225-265 19-66 (103)
14 2k9s_A Arabinose operon regula 43.2 47 0.0016 24.3 5.4 42 224-265 19-67 (107)
15 1gd8_A 50S ribosomal protein L 41.6 8.2 0.00028 31.4 1.0 77 135-212 13-101 (118)
16 3feu_A Putative lipoprotein; a 39.1 42 0.0014 27.2 5.0 40 224-265 107-147 (185)
17 3eyi_A Z-DNA-binding protein 1 38.4 15 0.00051 27.7 1.9 33 213-250 15-48 (72)
18 2jt1_A PEFI protein; solution 35.7 38 0.0013 24.9 3.8 29 132-166 22-50 (77)
19 3axj_A GM27569P, translin; tra 33.4 2.5E+02 0.0086 24.7 10.2 27 233-259 197-223 (249)
20 2jtw_A Transmembrane helix 7 o 33.1 15 0.00052 22.8 1.0 11 204-214 7-17 (26)
21 3bbo_P Ribosomal protein L17; 32.8 16 0.00054 32.4 1.5 78 134-212 101-190 (205)
22 2g3q_A Protein YBL047C; endocy 32.3 29 0.001 22.3 2.4 34 225-262 5-38 (43)
23 3fsp_A A/G-specific adenine gl 32.2 57 0.0019 29.8 5.2 83 71-166 14-107 (369)
24 2g3v_A CAG pathogenicity islan 32.2 44 0.0015 28.6 4.1 60 125-214 61-122 (208)
25 3kw6_A 26S protease regulatory 31.2 9.5 0.00033 27.0 -0.2 44 132-178 1-44 (78)
26 2dak_A Ubiquitin carboxyl-term 30.7 46 0.0016 23.3 3.4 38 223-264 8-45 (63)
27 2rg8_A Programmed cell death p 30.2 1.9E+02 0.0064 23.7 7.6 103 151-269 3-112 (165)
28 1hm6_A Annexin 1; phospholipid 30.2 3.2E+02 0.011 25.0 10.5 57 171-232 243-301 (346)
29 3oio_A Transcriptional regulat 28.9 99 0.0034 22.7 5.2 42 224-265 22-70 (113)
30 3n1e_A Vacuolar protein sortin 28.1 93 0.0032 25.7 5.3 102 123-257 7-127 (141)
31 3pls_A Macrophage-stimulating 27.4 84 0.0029 25.7 5.0 22 115-137 209-230 (298)
32 2gqb_A Conserved hypothetical 26.9 2.4E+02 0.0081 23.3 7.5 69 184-257 47-118 (130)
33 3l9s_A Thiol:disulfide interch 26.2 1.2E+02 0.004 24.7 5.7 36 212-247 93-129 (191)
34 2l76_A Nfatc2-interacting prot 25.7 14 0.00048 29.0 -0.1 22 137-158 41-62 (95)
35 3mn2_A Probable ARAC family tr 25.6 85 0.0029 22.8 4.3 42 224-265 17-65 (108)
36 2heo_A Z-DNA binding protein 1 25.6 52 0.0018 22.9 2.9 36 213-250 15-50 (67)
37 2y1q_A CLPC N-domain, negative 25.2 2.1E+02 0.0072 21.8 6.7 97 141-251 44-143 (150)
38 2ekk_A UBA domain from E3 ubiq 24.9 58 0.002 21.4 2.9 36 223-263 8-43 (47)
39 3oou_A LIN2118 protein; protei 24.8 1.2E+02 0.0042 22.0 5.0 41 225-265 21-68 (108)
40 3kzq_A Putative uncharacterize 24.7 1.2E+02 0.0043 24.4 5.5 39 209-247 107-147 (208)
41 2in3_A Hypothetical protein; D 24.4 2.1E+02 0.0071 22.8 6.8 37 211-247 116-154 (216)
42 2crn_A Ubash3A protein; compac 24.0 37 0.0013 24.3 1.9 40 223-265 8-47 (64)
43 3n5n_X A/G-specific adenine DN 23.3 3.7E+02 0.013 24.2 8.8 72 71-152 16-101 (287)
44 3etn_A Putative phosphosugar i 23.0 45 0.0016 27.9 2.6 41 125-166 8-53 (220)
45 2cqm_A Ribosomal protein L17 i 22.9 21 0.00072 29.1 0.5 75 137-212 3-91 (122)
46 4aw0_A HPDK1, 3-phosphoinositi 22.6 65 0.0022 29.0 3.7 57 116-174 216-274 (311)
47 1bl0_A Protein (multiple antib 22.3 1.1E+02 0.0038 23.1 4.5 43 223-265 25-74 (129)
48 1wji_A Tudor domain containing 22.1 59 0.002 23.1 2.7 37 223-263 8-44 (63)
49 2fji_1 Exocyst complex compone 22.1 51 0.0017 30.4 2.9 93 70-164 220-332 (399)
50 3c1x_A Hepatocyte growth facto 22.0 1.4E+02 0.0048 26.4 5.8 21 115-136 277-297 (373)
51 3fh2_A Probable ATP-dependent 21.1 2.9E+02 0.0098 21.3 7.9 98 141-251 45-145 (146)
52 2oez_A UPF0289 protein VP2528; 20.6 1.8E+02 0.0062 26.1 6.1 79 186-265 22-105 (247)
53 4dvc_A Thiol:disulfide interch 20.4 2.3E+02 0.008 21.5 6.1 41 223-264 104-144 (184)
54 2dl0_A SAM and SH3 domain-cont 20.3 58 0.002 24.9 2.5 61 86-146 16-79 (97)
55 2jxu_A TERB, KP-TERB; tellurit 20.0 3.1E+02 0.011 21.2 8.1 111 115-242 27-149 (153)
No 1
>3g80_A Protein B2; RNA-binding, viral protein, suppressor of RNAI, RNA interference; 2.50A {Nodamura virus}
Probab=82.84 E-value=1.6 Score=34.48 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.9
Q ss_pred HhcCCChhhhhhhHHHHHhhHHHHHHHH
Q 024283 233 AVLNVNKRSVDRDLDVYRNLLSKLLQAK 260 (269)
Q Consensus 233 ~~Lgls~ekv~KDL~lYrsnLeKmaQA~ 260 (269)
.+|....++|.|||+-|+.-|.|++|-.
T Consensus 49 ~sl~~qDpnV~kDLdn~~acL~k~~~t~ 76 (97)
T 3g80_A 49 QTLMIADPNVNKDLRAFCEFLTVQHQRA 76 (97)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccccCchHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999853
No 2
>2az0_A B2 protein; protein-RNA complex, four-helix bundle, viral protein/RNA complex; HET: 5BU; 2.60A {Flock house virus} SCOP: a.30.8.1 PDB: 2az2_A* 2b9z_A
Probab=72.47 E-value=5.2 Score=30.20 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=27.3
Q ss_pred HHHHHHHHH---hcCCCh--hhhhhhHHHHHhhHHHHHHHH
Q 024283 225 PTVLEKLCA---VLNVNK--RSVDRDLDVYRNLLSKLLQAK 260 (269)
Q Consensus 225 ~~~l~~l~~---~Lgls~--ekv~KDL~lYrsnLeKmaQA~ 260 (269)
|.-|+++++ ++-+.. ++|.|||+-|+.-|.|++|-.
T Consensus 12 P~~l~q~~q~v~~~t~qda~pnV~kDLdn~~acL~k~~~t~ 52 (73)
T 2az0_A 12 PDRIQTAVEAAMGMSYQDAPNNVRRDLDNLHACLNKAKLTV 52 (73)
T ss_dssp HHHHHHHHHTGGGSCCSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence 556666663 344444 899999999999999999854
No 3
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=62.92 E-value=2.5 Score=31.42 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=21.3
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHH
Q 024283 224 EPTVLEKLCAVLNVNKRSVDRDLDV 248 (269)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~l 248 (269)
..-.+++|++.||+|+.-|.+||+.
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 3446888999999999999999964
No 4
>2ou3_A Tellurite resistance protein of COG3793; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE I3A; 1.85A {Nostoc punctiforme} SCOP: a.287.1.1
Probab=60.89 E-value=63 Score=25.93 Aligned_cols=96 Identities=11% Similarity=0.138 Sum_probs=51.1
Q ss_pred cCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHH
Q 024283 131 EGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFA 210 (269)
Q Consensus 131 ~GY~peed~~~IF~Alc~Alg~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfA 210 (269)
.|--.++++..|-+ ++..+|.+|++.+. +.+ -.. .-++...+..|. ....+.+-+-
T Consensus 43 DG~v~~~E~~~i~~-~~~~~~l~~~~~~~----l~~---~~~----------~~~l~~~~~~i~------~~~~~~~~~l 98 (161)
T 2ou3_A 43 DGVISPEEKDWALG-FCASWGVADWVIED----LKT---YEA----------DEALEEVIARSP------QVSMAQRDIL 98 (161)
T ss_dssp SSCCCHHHHHHHHH-HHHHTTCCHHHHHH----HHH---CCC----------CSCHHHHHTTCT------TGGGCHHHHH
T ss_pred cCCCCHHHHHHHHH-HHHHcCCCHHHHHH----Hhh---ccC----------CCCHHHHHHHHH------HHhccHHHHH
Confidence 56666777777666 55677777765422 111 011 112333333332 2222322233
Q ss_pred HHHHHHHhhcCCCC---HHHHHHHHHhcCCChhhhhhhHHHHH
Q 024283 211 VGLFRLLELANATE---PTVLEKLCAVLNVNKRSVDRDLDVYR 250 (269)
Q Consensus 211 IGLf~LLE~~~~~d---~~~l~~l~~~Lgls~ekv~KDL~lYr 250 (269)
-.++.+.-..|..+ ...|.++++.||++...+++=...+.
T Consensus 99 ~~l~~vA~ADG~~~~~E~~~L~~iA~~Lgls~~~~~~l~~~~~ 141 (161)
T 2ou3_A 99 LSAIWVSAADGELHEKEKAKIRKMATILGIKEEIVDQLEQLYY 141 (161)
T ss_dssp HHHHHHHHTTSSCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 33444443334434 35899999999999988766554443
No 5
>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}
Probab=60.42 E-value=12 Score=28.64 Aligned_cols=32 Identities=34% Similarity=0.560 Sum_probs=29.6
Q ss_pred CCChhhhhhhHHHHHhhHHHHHHHHHHHHHHh
Q 024283 236 NVNKRSVDRDLDVYRNLLSKLLQAKELLKEYV 267 (269)
Q Consensus 236 gls~ekv~KDL~lYrsnLeKmaQA~elmeE~l 267 (269)
|=+++.++|...+.|-+-.|=-||+|-|+|++
T Consensus 18 ~pnke~inrevsilrh~yqkeiqaketmk~~l 49 (89)
T 2kj1_A 18 GPNKETINREVSILRHSYQKEIQAKETMKEVL 49 (89)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788999999999999999999999999987
No 6
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=58.69 E-value=4.6 Score=29.53 Aligned_cols=35 Identities=23% Similarity=0.370 Sum_probs=28.6
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHhcCCChhhhhhhH
Q 024283 212 GLFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 246 (269)
Q Consensus 212 GLf~LLE~~~~~d~~~l~~l~~~Lgls~ekv~KDL 246 (269)
.|+.+|...+..++....+|++.||+++..|++.|
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 46677766665666788999999999999999987
No 7
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=54.10 E-value=3.2 Score=31.77 Aligned_cols=24 Identities=21% Similarity=0.194 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCChhhhhhhHHH
Q 024283 225 PTVLEKLCAVLNVNKRSVDRDLDV 248 (269)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~l 248 (269)
.-.+.+|++.||+|...|.+||+.
T Consensus 16 ~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 16 RMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp SEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcHHHHHHHHCcCHHHHHHHHHH
Confidence 446889999999999999999964
No 8
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=52.57 E-value=8 Score=28.80 Aligned_cols=34 Identities=24% Similarity=0.390 Sum_probs=26.1
Q ss_pred HHHHHhhcCCCCHHHHHHHHHhcCCChhhhhhhH
Q 024283 213 LFRLLELANATEPTVLEKLCAVLNVNKRSVDRDL 246 (269)
Q Consensus 213 Lf~LLE~~~~~d~~~l~~l~~~Lgls~ekv~KDL 246 (269)
|..+|...++-++....+|++.||+++..|++.|
T Consensus 15 IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L 48 (81)
T 1qbj_A 15 ILKFLEELGEGKATTAHDLSGKLGTPKKEINRVL 48 (81)
T ss_dssp HHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 4556654554455678899999999999999987
No 9
>3r8s_N 50S ribosomal protein L17; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_N 3j19_N 2wwq_N 3oat_N* 3oas_N* 3ofd_N 3ofc_N 3ofr_N* 3ofz_N* 3og0_N 3ofq_N 3r8t_N 3i1n_N 1p85_L 1p86_L 1vs8_N 1vs6_N 2aw4_N 2awb_N 1vt2_N ...
Probab=49.49 E-value=11 Score=30.66 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=60.9
Q ss_pred CchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 024283 135 SEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (269)
Q Consensus 135 peed~~~IF~Alc~Alg---------~Dp~qyR~dA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (269)
+.+||.+++..++.+|= --+..+|.-|++|.-+|+..+.. ....|+..+.-+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~elapry~-~R~ 91 (120)
T 3r8s_N 13 NSSHRQAMFRNMAGSLVRHEIIKTTLPKAKELRRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFA-SRA 91 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHSSCCHHHHHHHHHTHHHHTT-TCC
T ss_pred ChHHHHHHHHHHHHHHHHcCeEEEcHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHcCCHHHHHHHHHHHHHHhc-CCC
Confidence 56899999999999873 35788999999999999976655 355677766678889999998876 455
Q ss_pred CcchhhHHHH
Q 024283 203 FSYSRFFAVG 212 (269)
Q Consensus 203 F~YSRlfAIG 212 (269)
--|+|+.=+|
T Consensus 92 GGYTRI~K~~ 101 (120)
T 3r8s_N 92 GGYTRILKCG 101 (120)
T ss_dssp SCCEEEEEEE
T ss_pred CCeEEEEECC
Confidence 5799986554
No 10
>2zjr_K 50S ribosomal protein L17; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.188.1.1 PDB: 1nwx_L* 1nwy_L* 1sm1_L* 1xbp_L* 2zjp_K* 2zjq_K 1nkw_L 3cf5_K* 3dll_K* 3pio_K* 3pip_K* 1pnu_L 1pny_L 1vor_O 1vou_O 1vow_O 1voy_O 1vp0_O
Probab=48.26 E-value=12 Score=30.26 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=60.4
Q ss_pred CchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 024283 135 SEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (269)
Q Consensus 135 peed~~~IF~Alc~Alg~---------Dp~qyR~dA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (269)
+.+||.+++..++.+|=. -++.+|.-|++|.-+|+..+.. ....|+..+.-+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~~~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (116)
T 2zjr_K 13 NSSARVALARAQATALLREGRIQTTLTKAKELRPFVEQLITTAKGGDLHSRRLVAQDIHDKDVVRKVMDEVAPKYA-ERP 91 (116)
T ss_dssp CTTHHHHHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHHHHHHTTCSHHHHHHHTTSCCCHHHHHHHHHTHHHHTT-TSC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHhhHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 467999999999998743 4788999999999999976644 345566666678889999998886 455
Q ss_pred CcchhhHHHH
Q 024283 203 FSYSRFFAVG 212 (269)
Q Consensus 203 F~YSRlfAIG 212 (269)
--|+|+.=+|
T Consensus 92 GGYTRI~K~~ 101 (116)
T 2zjr_K 92 GGYTRILRVG 101 (116)
T ss_dssp SCCCEEEECC
T ss_pred CCeeEEEECC
Confidence 5899987555
No 11
>3gl5_A Putative DSBA oxidoreductase SCO1869; probable DSBA oxidoreductase structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces coelicolor A3}
Probab=47.29 E-value=1.3e+02 Score=25.46 Aligned_cols=99 Identities=12% Similarity=0.056 Sum_probs=58.5
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCC-cc-hhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHH-h
Q 024283 142 IFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSK-EG-EVEGLLKDIAERASGKGNFSYSRFFAVGLFRLL-E 218 (269)
Q Consensus 142 IF~Alc~Alg~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~-~g-~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LL-E 218 (269)
+-+.+-+-.|..|++.+.--+.+..+|+..... +. |-.. .+ ...+.-..++ +...++ +-. +.-.||+.. +
T Consensus 57 ~~~~~~~k~g~~~~~~~~~~~~~~r~a~~~Gl~-f~-~~~~~~~nt~~a~r~~~~--A~~~g~--~~~-~~~alf~a~~~ 129 (239)
T 3gl5_A 57 VLTMLTAKYGMSQEQAQAGEDNLGAQAAAEGLA-YR-TRDRDHGSTFDLHRLLHL--AKERGR--HEA-LLDAFYRGNFA 129 (239)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCC-CC-CSSCEECCCHHHHHHHHH--HHTTTC--HHH-HHHHHHHHHHT
T ss_pred HHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCC-cc-CCCCCCCChHHHHHHHHH--HHhhCc--HHH-HHHHHHHHHHh
Confidence 344556667888998888888888888866543 11 1110 11 1122111111 122332 322 334566665 2
Q ss_pred h-cCCCC-HHHHHHHHHhcCCChhhhhhhHH
Q 024283 219 L-ANATE-PTVLEKLCAVLNVNKRSVDRDLD 247 (269)
Q Consensus 219 ~-~~~~d-~~~l~~l~~~Lgls~ekv~KDL~ 247 (269)
. .+..| ++.|.++++.+||+.+++.++++
T Consensus 130 ~g~~i~d~~~~L~~~a~~~Gld~~~~~~~l~ 160 (239)
T 3gl5_A 130 DERSVFNDDERLVELAVGAGLDAEEVRAVLA 160 (239)
T ss_dssp CSSCCSSCHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHc
Confidence 2 23368 99999999999999999988874
No 12
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=45.88 E-value=11 Score=27.78 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCChhhhhhhHH
Q 024283 225 PTVLEKLCAVLNVNKRSVDRDLD 247 (269)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~ 247 (269)
|-.+.+||+.+|+|...|.+||.
T Consensus 24 ~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 24 PVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp CEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CcCHHHHHHHHCCCHHHHHHHHH
Confidence 34688999999999999999995
No 13
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=43.85 E-value=47 Score=24.05 Aligned_cols=41 Identities=20% Similarity=0.143 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 024283 225 PTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (269)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (269)
+-.+++||+.+|+|+..+.+-+--+-+ +.-+|..|++++.+
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~~ 66 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLT 66 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHC
Confidence 457889999999999999887765533 35678889888865
No 14
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=43.15 E-value=47 Score=24.29 Aligned_cols=42 Identities=12% Similarity=0.040 Sum_probs=32.7
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 024283 224 EPTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (269)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (269)
++-.+++|++.+|+|...+.+=.--+-+ +.-+|..|++++.+
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~ 67 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLST 67 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 4557889999999999999887765433 45688999998874
No 15
>1gd8_A 50S ribosomal protein L17; two domains, ribosomal protein S8-like domain, Trp repressor-like domain, helix-turn-helix motif; 2.30A {Thermus thermophilus} SCOP: d.188.1.1 PDB: 1vsa_L 1vsp_L 1yl3_0 2b66_R 2b9n_R 2b9p_R 2hgj_Q 2hgq_Q 2hgu_Q 2j01_R 2j03_R 2jl6_R 2jl8_R 2v47_R 2v49_R 2wdi_R 2wdj_R 2wdl_R 2wdn_R 2wh2_R ...
Probab=41.60 E-value=8.2 Score=31.36 Aligned_cols=77 Identities=17% Similarity=0.181 Sum_probs=59.3
Q ss_pred CchhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCCC
Q 024283 135 SEEDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (269)
Q Consensus 135 peed~~~IF~Alc~Alg---------~Dp~qyR~dA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (269)
+.+||.+++..++.+|= --+.++|.-|++|.-+|+..+.. ....|+..+.-+..++..|+.+-+ +-+
T Consensus 13 ~~~hR~amlrnl~tsLi~herI~TT~~KAKelr~~aEklITlaK~g~l~~rR~a~~~l~~~~~v~KLF~~iapry~-~R~ 91 (118)
T 1gd8_A 13 HSSHRLALYRNQAKSLLTHGRITTTVPKAKELRGFVDHLIHLAKRGDLHARRLVLRDLQDVKLVRKLFDEIAPRYR-DRQ 91 (118)
T ss_dssp -CHHHHHHHHHHHHHHHHHSEEEEEHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHSCCHHHHHHHHHTHHHHTS-SCC
T ss_pred ChHHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CCC
Confidence 45799999999999873 34788999999999999966543 345566666678889999998886 455
Q ss_pred CcchhhHHHH
Q 024283 203 FSYSRFFAVG 212 (269)
Q Consensus 203 F~YSRlfAIG 212 (269)
--|+|+.=+|
T Consensus 92 GGYTRI~K~~ 101 (118)
T 1gd8_A 92 GGYTRVLKLA 101 (118)
T ss_dssp SCCEEEEEEE
T ss_pred CCeEEEEECC
Confidence 5899986554
No 16
>3feu_A Putative lipoprotein; alpha-beta structure, structural genomics, PSI-2, protein ST initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Vibrio fischeri} SCOP: c.47.1.0
Probab=39.11 E-value=42 Score=27.20 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=30.4
Q ss_pred CHHHHHHHHHhcCC-ChhhhhhhHHHHHhhHHHHHHHHHHHHH
Q 024283 224 EPTVLEKLCAVLNV-NKRSVDRDLDVYRNLLSKLLQAKELLKE 265 (269)
Q Consensus 224 d~~~l~~l~~~Lgl-s~ekv~KDL~lYrsnLeKmaQA~elmeE 265 (269)
+++.|.++++.+|+ +.+++++|+.- ...+++.+..++.+.
T Consensus 107 ~~~~L~~~a~~~Gl~d~~~~~~~~~~--~~~~~v~~~~~~a~~ 147 (185)
T 3feu_A 107 QQEAYSKAFTSRGLVSPYDFNEEQRD--TLIKKVDNAKMLSEK 147 (185)
T ss_dssp HHHHHHHHHHTTTCCCGGGCCHHHHH--HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 56789999999999 99999998853 455666666655443
No 17
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=38.44 E-value=15 Score=27.75 Aligned_cols=33 Identities=27% Similarity=0.497 Sum_probs=24.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHhcCCChhh-hhhhHHHHH
Q 024283 213 LFRLLELANATEPTVLEKLCAVLNVNKRS-VDRDLDVYR 250 (269)
Q Consensus 213 Lf~LLE~~~~~d~~~l~~l~~~Lgls~ek-v~KDL~lYr 250 (269)
+++.|+..|+. ..-.|+.+||+...| |+.|| |.
T Consensus 15 I~~fL~~~Gp~---~AL~IAK~LGlktAK~VNp~L--Y~ 48 (72)
T 3eyi_A 15 IYRFLKDNGPQ---RALVIAQALGMRTAKDVNRDL--YR 48 (72)
T ss_dssp HHHHHHHHCSE---EHHHHHHHTTCCSGGGTHHHH--HH
T ss_pred HHHHHHHcCCc---hHHHHHHHhCcchhhhcCHHH--HH
Confidence 57777766543 334588999999999 99998 64
No 18
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=35.66 E-value=38 Score=24.94 Aligned_cols=29 Identities=21% Similarity=0.204 Sum_probs=25.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 024283 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEE 166 (269)
Q Consensus 132 GY~peed~~~IF~Alc~Alg~Dp~qyR~dA~~l~~ 166 (269)
||||. ..-||+++|..+...|.|-.+|++
T Consensus 22 g~~ps------v~EIa~~lgvS~~TVrr~L~~Le~ 50 (77)
T 2jt1_A 22 GAPVK------TRDIADAAGLSIYQVRLYLEQLHD 50 (77)
T ss_dssp TSCEE------HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCcC------HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 78875 556899999999999999999988
No 19
>3axj_A GM27569P, translin; translin/TRAX heterodimer, passenger RNA cleavage, RNAse, DN protein; 2.10A {Drosophila melanogaster} PDB: 2qva_A 2qrx_A 3riu_A
Probab=33.41 E-value=2.5e+02 Score=24.71 Aligned_cols=27 Identities=15% Similarity=0.340 Sum_probs=22.3
Q ss_pred HhcCCChhhhhhhHHHHHhhHHHHHHH
Q 024283 233 AVLNVNKRSVDRDLDVYRNLLSKLLQA 259 (269)
Q Consensus 233 ~~Lgls~ekv~KDL~lYrsnLeKmaQA 259 (269)
..|+++.+-+.|=+|.-|.+++|++.+
T Consensus 197 ~~Ln~~n~~LRkK~D~lk~sv~KvE~v 223 (249)
T 3axj_A 197 RLLNLKNDGLRKRFDALKYDVKKIEEV 223 (249)
T ss_dssp HHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888898888874
No 20
>2jtw_A Transmembrane helix 7 of yeast vATPase; peptide, micelle-bound, membrane protein; NMR {Synthetic} PDB: 2rpw_X
Probab=33.13 E-value=15 Score=22.77 Aligned_cols=11 Identities=45% Similarity=0.742 Sum_probs=9.8
Q ss_pred cchhhHHHHHH
Q 024283 204 SYSRFFAVGLF 214 (269)
Q Consensus 204 ~YSRlfAIGLf 214 (269)
.|+|++|+||-
T Consensus 7 sylRlwaLsLa 17 (26)
T 2jtw_A 7 SYLRLWALSLA 17 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHhhhh
Confidence 59999999985
No 21
>3bbo_P Ribosomal protein L17; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.2
Probab=32.77 E-value=16 Score=32.45 Aligned_cols=78 Identities=18% Similarity=0.263 Sum_probs=61.2
Q ss_pred CCchhHHHHHHHHHHhcCC---------CHHHHHHHHHHHHHHHhcCCcc---ccccccCCcchhHHHHHHHHHHhcCCC
Q 024283 134 PSEEDREAIFQAYITALKE---------DPEQYRIDAQKLEEWARGQTAS---SLVEFPSKEGEVEGLLKDIAERASGKG 201 (269)
Q Consensus 134 ~peed~~~IF~Alc~Alg~---------Dp~qyR~dA~~l~~~A~~~s~~---~l~~~~~~~g~~~~~l~~Ia~~~~~n~ 201 (269)
++.+||.+++.-++.+|=. -++++|.-||+|.-+|+..+.. ....|+..+.-+..++..|+.+-+ +.
T Consensus 101 RtssHRkAmLRNLvtsLI~HeRI~TT~aKAKElR~~aEkLITlAK~gdlhaRR~a~~~L~dk~~V~KLF~eiaPRY~-dR 179 (205)
T 3bbo_P 101 RPPDQRRALLRGLTTQLLKHGRIKTTKARARAVRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYG-ER 179 (205)
T ss_dssp SCGGGHHHHHHHHHHHHHHTSCEEECHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHTTCCCTTHHHHHTTSSGGGGS-SC
T ss_pred CChHHHHHHHHHHHHHHHhCCeEEecHHHHHHHHHHHHHHHhHhhcCChHHHHHHHHHhCCHHHHHHHHHHHHHHhC-CC
Confidence 3578999999999998743 4789999999999999976654 345667666678888899998886 45
Q ss_pred CCcchhhHHHH
Q 024283 202 NFSYSRFFAVG 212 (269)
Q Consensus 202 ~F~YSRlfAIG 212 (269)
+--|+|+.=+|
T Consensus 180 ~GGYTRIlKlg 190 (205)
T 3bbo_P 180 NGGYTRIIRTL 190 (205)
T ss_dssp CSCCEECCBCS
T ss_pred CCCeeEEEECC
Confidence 55899987655
No 22
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=32.32 E-value=29 Score=22.34 Aligned_cols=34 Identities=15% Similarity=0.228 Sum_probs=25.0
Q ss_pred HHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHH
Q 024283 225 PTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKEL 262 (269)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~el 262 (269)
++.+++|.+ |||+.+.+.+=|....++++ +|.+.
T Consensus 5 e~~i~~L~~-MGF~~~~a~~AL~~~~~n~e---~A~~~ 38 (43)
T 2g3q_A 5 SLAVEELSG-MGFTEEEAHNALEKCNWDLE---AATNF 38 (43)
T ss_dssp HHHHHHHHT-TTSCHHHHHHHHHHHTSCHH---HHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHHhCcCHH---HHHHH
Confidence 457888876 89999999998877766554 45444
No 23
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
Probab=32.17 E-value=57 Score=29.76 Aligned_cols=83 Identities=12% Similarity=0.262 Sum_probs=53.1
Q ss_pred CchhHhHHHHHhhCCCcCC-----cchhHHHHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHHH----
Q 024283 71 PTVAETKMNFLKLYKRPIP-----SIYNTVLQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDREA---- 141 (269)
Q Consensus 71 ~TVSDTKr~F~~~y~rPI~-----sIYrrvv~ELLVE~HLLs~n~~F~YDplFALG~VTvFd~fm~GY~peed~~~---- 141 (269)
..+.+.=.++|..+.++.| .-|.-+|-++|.|+- + .--+..+|.+|++.||..++...
T Consensus 14 ~~~~~~l~~w~~~~~r~lpw~~~~~p~~~lv~~il~qqt--~-----------~~~~~~~~~~l~~~~pt~~~la~a~~~ 80 (369)
T 3fsp_A 14 REFQRDLLDWFARERRDLPWRKDRDPYKVWVSEVMLQQT--R-----------VETVIPYFEQFIDRFPTLEALADADED 80 (369)
T ss_dssp HHHHHHHHHHHHHHCCCCGGGSCCCHHHHHHHHHHTTTS--C-----------HHHHHHHHHHHHHHCCSHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCChHHHHHHHHHhccC--c-----------HHHHHHHHHHHHHHCCCHHHHHCCCHH
Confidence 3588888899999999876 567777777776653 1 12366788999999986544221
Q ss_pred HHHHHHHhcCCC--HHHHHHHHHHHHH
Q 024283 142 IFQAYITALKED--PEQYRIDAQKLEE 166 (269)
Q Consensus 142 IF~Alc~Alg~D--p~qyR~dA~~l~~ 166 (269)
-...+++.+|+- ...+++-|+.+.+
T Consensus 81 ~l~~~i~~~G~~~ra~~l~~~a~~~~~ 107 (369)
T 3fsp_A 81 EVLKAWEGLGYYSRVRNLHAAVKEVKT 107 (369)
T ss_dssp HHHHTTTTSSCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 124456778883 2333333444433
No 24
>2g3v_A CAG pathogenicity island protein 13; pathogenicity island, type IV secretion system, unknown function; 2.30A {Helicobacter pylori}
Probab=32.16 E-value=44 Score=28.57 Aligned_cols=60 Identities=32% Similarity=0.572 Sum_probs=36.7
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCc
Q 024283 125 VYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFS 204 (269)
Q Consensus 125 vFd~fm~GY~peed~~~IF~Alc~Alg~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~ 204 (269)
+.|.....|--+ +.|.++++|.|. +++--.-|+. +--.+|.+||+ ||+|.
T Consensus 61 aldkvlrnymkd------yraviksigvdk--fkkvyrlles------------------etmellhaiae----npnfl 110 (208)
T 2g3v_A 61 ALDKVLRNYMKD------YRAVIKSIGVDK--FKKVYRLLES------------------ETMELLHAIAE----NPNFL 110 (208)
T ss_dssp HHHHHHHHHSSC------HHHHHHHTCHHH--HHHHHHHHHH------------------HHHHHHHHHHH----CTTSS
T ss_pred hHHHHHHHHHHH------HHHHHHHhchHH--HHHHHHHHHH------------------HHHHHHHHHHh----CCchh
Confidence 455555555433 568999999874 3332222221 12247889998 99999
Q ss_pred chhhH--HHHHH
Q 024283 205 YSRFF--AVGLF 214 (269)
Q Consensus 205 YSRlf--AIGLf 214 (269)
+|+|- -+|+|
T Consensus 111 fskfdrsilgif 122 (208)
T 2g3v_A 111 FSKFDRSILGIF 122 (208)
T ss_dssp CBGGGGGGGGGT
T ss_pred HHhhhHHHHHHh
Confidence 99874 34544
No 25
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=31.16 E-value=9.5 Score=27.05 Aligned_cols=44 Identities=20% Similarity=0.277 Sum_probs=30.7
Q ss_pred CCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcccccc
Q 024283 132 GYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVE 178 (269)
Q Consensus 132 GY~peed~~~IF~Alc~Alg~Dp~qyR~dA~~l~~~A~~~s~~~l~~ 178 (269)
+.|..++|..||..+++....+++ -|-+.|.+...|.|+.||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~---~dl~~la~~t~G~SGADi~~ 44 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRG---INLRKIAELMPGASGAEVKG 44 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTT---CCHHHHHHTCTTCCHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCc---cCHHHHHHHcCCCCHHHHHH
Confidence 457889999999999988776533 13445555566777777663
No 26
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.70 E-value=46 Score=23.35 Aligned_cols=38 Identities=11% Similarity=0.168 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHH
Q 024283 223 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLK 264 (269)
Q Consensus 223 ~d~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elme 264 (269)
.+++.+++|.+ |||+.+++.+=|....++ +++|.+.+-
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~t~~n---ve~A~e~L~ 45 (63)
T 2dak_A 8 PPEDCVTTIVS-MGFSRDQALKALRATNNS---LERAVDWIF 45 (63)
T ss_dssp CCHHHHHHHHH-HTCCHHHHHHHHHHTTSC---SHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCC---HHHHHHHHH
Confidence 36788999987 799999999988776665 566666653
No 27
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=30.23 E-value=1.9e+02 Score=23.74 Aligned_cols=103 Identities=17% Similarity=0.249 Sum_probs=64.3
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCCHHHHHH
Q 024283 151 KEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEK 230 (269)
Q Consensus 151 g~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~~d~~~l~~ 230 (269)
..+++++++.++.+.+ +|++ .|+.+.....+.+ . +.+. ++..+.-.++-.-||.. +.+-+.+-+
T Consensus 3 ~~s~ee~~kk~~~ii~-----------EYf~-~~D~~Ea~~~l~e-L-~~p~-~~~~~V~~~I~~aldrk-~~ere~~s~ 66 (165)
T 2rg8_A 3 PLDERAFEKTLTPIIQ-----------EYFE-HGDTNEVAEMLRD-L-NLGE-MKSGVPVLAVSLALEGK-ASHREMTSK 66 (165)
T ss_dssp CSSHHHHHHHHHHHHH-----------HHHH-HCCHHHHHHHHHH-H-TCSG-GGGHHHHHHHHHHHTSC-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-----------HHHc-CCCHHHHHHHHHH-h-CCcc-cHHHHHHHHHHHHHcCC-HHHHHHHHH
Confidence 4678888888887766 5544 2445555555554 2 1344 45566666666666543 233445555
Q ss_pred HHHhcC---CChhhhhhhHHHHHhhHHHHH----HHHHHHHHHhcC
Q 024283 231 LCAVLN---VNKRSVDRDLDVYRNLLSKLL----QAKELLKEYVDR 269 (269)
Q Consensus 231 l~~~Lg---ls~ekv~KDL~lYrsnLeKma----QA~elmeE~ler 269 (269)
|-..|. ++.+-+.+=+..+-+.++.++ .|.+.+-++++|
T Consensus 67 LL~~L~~~~ls~~~i~~Gf~~lle~ldDl~iDiP~a~~~la~fiar 112 (165)
T 2rg8_A 67 LLSDLCGTVMSTTDVEKSFDKLLKDLPELALDTPRAPQLVGQFIAR 112 (165)
T ss_dssp HHHHHBTTTBCHHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhChhhcccccchHHHHHHHHHH
Confidence 554443 788888888888888888877 566666666543
No 28
>1hm6_A Annexin 1; phospholipid/Ca(2+)-binding protein, calcium-free form, FULL-length protein comprising protein core and N-terminal domain, metal; 1.80A {Sus scrofa} SCOP: a.65.1.1 PDB: 1mcx_A 1ain_A 1bo9_A
Probab=30.19 E-value=3.2e+02 Score=24.98 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=31.8
Q ss_pred CCccccccccCC--cchhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCCHHHHHHHH
Q 024283 171 QTASSLVEFPSK--EGEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLC 232 (269)
Q Consensus 171 ~s~~~l~~~~~~--~g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~~d~~~l~~l~ 232 (269)
....+|.+-+.+ .|+.+..|-.|...+.. + ..+||--|+.-++-.|..|...+.-|+
T Consensus 243 ~~g~~Le~~I~~e~sG~~~~~L~~lv~~~r~-~----~~~~A~~L~~A~~g~GTde~~lirIlv 301 (346)
T 1hm6_A 243 YSKHDMNKVLDLELKGDIENCLTVVVKCATS-K----PMFFAEKLHQAMKGIGTRHKTLIRIMV 301 (346)
T ss_dssp TCCCCTTSBCCCCCBHHHHHHHHHHHHHHHC-H----HHHHHHHHHHHHSSSSCCHHHHHHHHH
T ss_pred HHCcCHHHHHHHHcCchHHHHHHHHHhhcCC-c----cHHHHHHHHHHhcCCCCCHHHHhHHHh
Confidence 334444444443 67788888777654432 2 345888888888654333333333333
No 29
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=28.85 E-value=99 Score=22.69 Aligned_cols=42 Identities=26% Similarity=0.472 Sum_probs=31.5
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 024283 224 EPTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (269)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (269)
++-.+++||+.+|+|...+.+-+--+-+ +.-+|..|++++.+
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~ 70 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQYLGTVPSKYYLELRLNRARQLLQQ 70 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 4457888999999999988887765522 23578889998875
No 30
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=28.06 E-value=93 Score=25.72 Aligned_cols=102 Identities=17% Similarity=0.217 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCCCchhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHHHHHHHHhcCCCC
Q 024283 123 VTVYDRLMEGYPSEEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLLKDIAERASGKGN 202 (269)
Q Consensus 123 VTvFd~fm~GY~peed~~~IF~Alc~Alg~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (269)
..=||++.+-|+ +|+..|++=|+.=.+.=.. ..+..|-.+...+...+..|++..
T Consensus 7 L~efDkv~rdy~--eH~~eI~~KLv~Im~~r~~------------------~~l~~Wd~k~pvpS~~m~tl~Ke~----- 61 (141)
T 3n1e_A 7 LRHFDHITKDYH--DHIAEISAKLVAIMDSLFD------------------KLLSKYEVKAPVPSPCFRNICKQM----- 61 (141)
T ss_dssp HHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHH------------------HHHTTCCCCSSSSCHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH------------------HHHHHhccCCCCCCHHHHHHHHHH-----
Confidence 445999999995 8999999887754432111 111245444334555666665422
Q ss_pred CcchhhHHHHHHHHHhhcCCCC-------------HHHHHHHHHhcCC----Chhh--hhhhHHHHHhhHHHHH
Q 024283 203 FSYSRFFAVGLFRLLELANATE-------------PTVLEKLCAVLNV----NKRS--VDRDLDVYRNLLSKLL 257 (269)
Q Consensus 203 F~YSRlfAIGLf~LLE~~~~~d-------------~~~l~~l~~~Lgl----s~ek--v~KDL~lYrsnLeKma 257 (269)
.-|.+.|-..=+.+ .+.+.+-...+++ .+.+ |-+|+..|.++|.||+
T Consensus 62 --------~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~ 127 (141)
T 3n1e_A 62 --------TKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALK 127 (141)
T ss_dssp --------HHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTST
T ss_pred --------HHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccC
Confidence 12344441111111 1234444566677 4544 8899999999999875
No 31
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=27.45 E-value=84 Score=25.75 Aligned_cols=22 Identities=23% Similarity=0.587 Sum_probs=16.4
Q ss_pred cccchhhHHHHHHHHhcCCCCch
Q 024283 115 DPVFALGFVTVYDRLMEGYPSEE 137 (269)
Q Consensus 115 DplFALG~VTvFd~fm~GY~pee 137 (269)
..||+||++ .|+-++.|.||..
T Consensus 209 ~Di~slG~i-l~~l~~g~~~~~~ 230 (298)
T 3pls_A 209 SDVWSFGVL-LWELLTRGAPPYR 230 (298)
T ss_dssp HHHHHHHHH-HHHHHHTSCCTTT
T ss_pred hchhhHHHH-HHHHhhCCCCCCc
Confidence 369999964 6788887887643
No 32
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=26.93 E-value=2.4e+02 Score=23.32 Aligned_cols=69 Identities=19% Similarity=0.268 Sum_probs=49.7
Q ss_pred chhHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCCHHHHHHHHHhcCCCh---hhhhhhHHHHHhhHHHHH
Q 024283 184 GEVEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATEPTVLEKLCAVLNVNK---RSVDRDLDVYRNLLSKLL 257 (269)
Q Consensus 184 g~~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~~d~~~l~~l~~~Lgls~---ekv~KDL~lYrsnLeKma 257 (269)
-++..+|..++++.+.+-+|.-| -|-|+.||.+ ....+.=++|++.||++. +.....+-|.|-++.|++
T Consensus 47 VDV~avL~~~~~~~~~~lnWrtS---IVDLmKlLgl--DsSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk~vm~kLa 118 (130)
T 2gqb_A 47 IDVAPILDKAVKAKGEKLEWRTS---IVDLMKALDI--DSSLSARKELAKELGYSGDMNDSASMNIWLHKQVMSKLV 118 (130)
T ss_dssp EECHHHHHHHHHHHSSCCCTTTC---HHHHHHHTCC--CCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHHHHHHHHG
T ss_pred ccHHHHHHHHHHHcCcCCccHHH---HHHHHHHhCC--CccHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHH
Confidence 47889999998877655566555 3556666522 234678899999999874 456677788888888876
No 33
>3l9s_A Thiol:disulfide interchange protein; thioredoxin-fold, DSBA, thiol-disulfide oxidoreductase, DISU bond, redox-active center; 1.58A {Salmonella enterica subsp} SCOP: c.47.1.13 PDB: 1a23_A 1a24_A 1a2j_A 1a2l_A 1a2m_A 1dsb_A 1fvk_A 3dks_A 1bq7_A 1fvj_A 1acv_A 1u3a_A* 1ti1_A* 2hi7_A* 2leg_A* 2zup_A* 3e9j_B* 1ac1_A 2b6m_A 2b3s_A
Probab=26.22 E-value=1.2e+02 Score=24.73 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=27.6
Q ss_pred HHHHHHhhc-CCCCHHHHHHHHHhcCCChhhhhhhHH
Q 024283 212 GLFRLLELA-NATEPTVLEKLCAVLNVNKRSVDRDLD 247 (269)
Q Consensus 212 GLf~LLE~~-~~~d~~~l~~l~~~Lgls~ekv~KDL~ 247 (269)
.||..+-.. +..+++.|.++++.+|++.++++++++
T Consensus 93 ~lf~a~~~~~~~~~~~~L~~~a~~~Gld~~~~~~~~~ 129 (191)
T 3l9s_A 93 PLFEAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWN 129 (191)
T ss_dssp HHHHHHHTSCCCSSHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 466665222 235788999999999999999998874
No 34
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=25.65 E-value=14 Score=29.02 Aligned_cols=22 Identities=18% Similarity=0.235 Sum_probs=18.5
Q ss_pred hhHHHHHHHHHHhcCCCHHHHH
Q 024283 137 EDREAIFQAYITALKEDPEQYR 158 (269)
Q Consensus 137 ed~~~IF~Alc~Alg~Dp~qyR 158 (269)
....+||+|||+-.|.++..+|
T Consensus 41 t~l~KL~~aYc~r~gv~~~sir 62 (95)
T 2l76_A 41 EPLQSVVDHMATHLGVSPSRIL 62 (95)
T ss_dssp SCTHHHHHHHHHHHTSCGGGEE
T ss_pred ChHHHHHHHHHhhcCCChhhEE
Confidence 4568999999999999988764
No 35
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=25.64 E-value=85 Score=22.79 Aligned_cols=42 Identities=26% Similarity=0.428 Sum_probs=30.9
Q ss_pred CHHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 024283 224 EPTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (269)
Q Consensus 224 d~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (269)
++-.+++||+.+|+|+..+.+-.--+-+ +.-+|..|++++.+
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~ 65 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVRLQHAHNLLSD 65 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHc
Confidence 3457888899999999888887654422 34578889988875
No 36
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=25.58 E-value=52 Score=22.90 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHHhhcCCCCHHHHHHHHHhcCCChhhhhhhHHHHH
Q 024283 213 LFRLLELANATEPTVLEKLCAVLNVNKRSVDRDLDVYR 250 (269)
Q Consensus 213 Lf~LLE~~~~~d~~~l~~l~~~Lgls~ekv~KDL~lYr 250 (269)
|..+|... ..|-...+|++.+|+|+..|.|.|...+
T Consensus 15 IL~~L~~~--~~~~s~~eLA~~lglsr~tv~~~l~~L~ 50 (67)
T 2heo_A 15 ILQVLSDD--GGPVAIFQLVKKCQVPKKTLNQVLYRLK 50 (67)
T ss_dssp HHHHHHHH--CSCEEHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHc--CCCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 44555322 1345678899999999999999986544
No 37
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=25.18 E-value=2.1e+02 Score=21.78 Aligned_cols=97 Identities=14% Similarity=0.127 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHH---HHHHHHhcCCCCCcchhhHHHHHHHHH
Q 024283 141 AIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLL---KDIAERASGKGNFSYSRFFAVGLFRLL 217 (269)
Q Consensus 141 ~IF~Alc~Alg~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l---~~Ia~~~~~n~~F~YSRlfAIGLf~LL 217 (269)
.+...+++..|.|++.++++.+...+ ..+... ....-....+.+| ..+|.+. +..|-=+--+ |..|+
T Consensus 44 ~~~~~iL~~~g~~~~~l~~~l~~~l~---~~~~~~--~~~~~s~~~~~vL~~A~~~A~~~--~~~~i~~ehl---Llall 113 (150)
T 2y1q_A 44 GIAAKALQALGLGSEKIQKEVESLIG---RAQEMS--QTIHYTPRAKKVIELSMDEARKL--GHSYVGTEHI---LLGLI 113 (150)
T ss_dssp SHHHHHHHHTTCCHHHHHHHHHHHHC---CC-------CCEECHHHHHHHHHHHHHHHHT--TCSSBCHHHH---HHHHH
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHhc---cCCccc--ccCCCCHHHHHHHHHHHHHHHHc--CCCeecHHHH---HHHHH
Confidence 46778899999999999988766543 222110 0011122344444 2333322 3333323222 23333
Q ss_pred hhcCCCCHHHHHHHHHhcCCChhhhhhhHHHHHh
Q 024283 218 ELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 251 (269)
Q Consensus 218 E~~~~~d~~~l~~l~~~Lgls~ekv~KDL~lYrs 251 (269)
+.. +. ...++-+.+|++.+++.+.+.-+++
T Consensus 114 ~~~---~~-~a~~~L~~~gi~~~~l~~~i~~~~g 143 (150)
T 2y1q_A 114 REG---EG-VAARVLNNLGVSLNKARQQVLQLLG 143 (150)
T ss_dssp HHC---CS-HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hCC---Cc-HHHHHHHHcCCCHHHHHHHHHHHHC
Confidence 221 11 2345666679999999988876664
No 38
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.90 E-value=58 Score=21.39 Aligned_cols=36 Identities=19% Similarity=0.185 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHH
Q 024283 223 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELL 263 (269)
Q Consensus 223 ~d~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elm 263 (269)
.+++.+.+|.+ |||+.+++.+=|..- + .+++|.+.+
T Consensus 8 ~~~~~v~~L~~-MGF~~~~a~~AL~~~--~--n~e~A~~~L 43 (47)
T 2ekk_A 8 VNQQQLQQLMD-MGFTREHAMEALLNT--S--TMEQATEYL 43 (47)
T ss_dssp SCHHHHHHHHH-HHCCHHHHHHHHHHS--C--SHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHc--C--CHHHHHHHH
Confidence 36788999987 899999999877544 3 477777665
No 39
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=24.77 E-value=1.2e+02 Score=21.99 Aligned_cols=41 Identities=17% Similarity=0.051 Sum_probs=30.6
Q ss_pred HHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 024283 225 PTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (269)
Q Consensus 225 ~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (269)
+-.+++|++.+|+|+..+.+-.--+-+ +.-+|..|+++|.+
T Consensus 21 ~~~~~~lA~~~~~S~~~l~r~fk~~~G~s~~~~~~~~Rl~~A~~lL~~ 68 (108)
T 3oou_A 21 GMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKEELLQ 68 (108)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 457888899999999888887655422 24478899988864
No 40
>3kzq_A Putative uncharacterized protein VP2116; protein with unknown function, STRU genomics, PSI, MCSG, protein structure initiative; HET: PG6; 2.10A {Vibrio parahaemolyticus}
Probab=24.70 E-value=1.2e+02 Score=24.38 Aligned_cols=39 Identities=13% Similarity=0.180 Sum_probs=29.2
Q ss_pred HHHHHHHHH--hhcCCCCHHHHHHHHHhcCCChhhhhhhHH
Q 024283 209 FAVGLFRLL--ELANATEPTVLEKLCAVLNVNKRSVDRDLD 247 (269)
Q Consensus 209 fAIGLf~LL--E~~~~~d~~~l~~l~~~Lgls~ekv~KDL~ 247 (269)
+.-.||+.. +-.+..|++.|.++++.+|++.+++.++++
T Consensus 107 ~~~~l~~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~ 147 (208)
T 3kzq_A 107 MLEAIQHAYYLRAMPPHEEATHLQLAKEIGLNVQQFKNDMD 147 (208)
T ss_dssp HHHHHHHHHHTSCCCTTCHHHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 444566665 222336889999999999999999998874
No 41
>2in3_A Hypothetical protein; DSBA family, FRNE-like subfamily, disulfide isomerase, struc genomics, PSI-2, protein structure initiative; 1.85A {Nitrosomonas europaea}
Probab=24.35 E-value=2.1e+02 Score=22.77 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=27.3
Q ss_pred HHHHHHH-hhc-CCCCHHHHHHHHHhcCCChhhhhhhHH
Q 024283 211 VGLFRLL-ELA-NATEPTVLEKLCAVLNVNKRSVDRDLD 247 (269)
Q Consensus 211 IGLf~LL-E~~-~~~d~~~l~~l~~~Lgls~ekv~KDL~ 247 (269)
-.||+-. +.. +..|++.|.++++.+|++.+++.++++
T Consensus 116 ~~lf~a~~~~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~ 154 (216)
T 2in3_A 116 AAIQRAFYVGQEDVAQLAILKKLAVDLGIPESRFTPVFQ 154 (216)
T ss_dssp HHHHHHHHTTCCCTTSHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence 3455554 222 225789999999999999999998875
No 42
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=24.04 E-value=37 Score=24.27 Aligned_cols=40 Identities=20% Similarity=0.267 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHHH
Q 024283 223 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLKE 265 (269)
Q Consensus 223 ~d~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elmeE 265 (269)
.+++.+++|.+ |||+.+++.|=|-.-.+ ..+++|.+-+-+
T Consensus 8 ~~e~~v~~L~~-MGF~~~~a~~AL~~t~n--~~~e~A~~wL~~ 47 (64)
T 2crn_A 8 SSPSLLEPLLA-MGFPVHTALKALAATGR--KTAEEALAWLHD 47 (64)
T ss_dssp CSCSSHHHHHH-TSCCHHHHHHHHHHHTS--CCHHHHHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCC--CCHHHHHHHHHh
Confidence 45678899988 89999999998844333 235666665543
No 43
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens}
Probab=23.27 E-value=3.7e+02 Score=24.20 Aligned_cols=72 Identities=13% Similarity=0.215 Sum_probs=44.6
Q ss_pred CchhHhHHHHHhhCCCcCCcchhHH----------HHHHHHHHhhhcccccccccccchhhHHHHHHHHhcCCCCchhHH
Q 024283 71 PTVAETKMNFLKLYKRPIPSIYNTV----------LQELIVQQHLMRYKRTYQYDPVFALGFVTVYDRLMEGYPSEEDRE 140 (269)
Q Consensus 71 ~TVSDTKr~F~~~y~rPI~sIYrrv----------v~ELLVE~HLLs~n~~F~YDplFALG~VTvFd~fm~GY~peed~~ 140 (269)
..+.+.=..+|..+.|..| ||+. -=|+||..-| +-|.+ .--+..+|.+|++.||..++..
T Consensus 16 ~~~~~~ll~Wy~~~~R~lP--WR~~~~~~~d~~~dpfe~LVs~IL-sQQts-------~~~v~~~~~rL~~~fptpe~La 85 (287)
T 3n5n_X 16 TAFRGSLLSWYDQEKRDLP--WRRRAEDEMDLDRRAYAVWVSEVM-LQQTQ-------VATVINYYTGWMQKWPTLQDLA 85 (287)
T ss_dssp HHHHHHHHHHHHHHCCCCH--HHHHHHHCCSHHHHHHHHHHHHHH-HHTSC-------HHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCC--CcCcCccccCCCCCHHHHHHHHHH-hCCCc-------HHHHHHHHHHHHHHCCCHHHHH
Confidence 3467777889999999876 6763 1244443333 22332 1235678899999998654432
Q ss_pred ----HHHHHHHHhcCC
Q 024283 141 ----AIFQAYITALKE 152 (269)
Q Consensus 141 ----~IF~Alc~Alg~ 152 (269)
.-...++..+|+
T Consensus 86 ~a~~eel~~~ir~lG~ 101 (287)
T 3n5n_X 86 SASLEEVNQLWAGLGY 101 (287)
T ss_dssp TSCHHHHHHHHTTSSC
T ss_pred cCCHHHHHHHHHHcCC
Confidence 123456688888
No 44
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=23.01 E-value=45 Score=27.88 Aligned_cols=41 Identities=12% Similarity=0.028 Sum_probs=24.4
Q ss_pred HHHHHhcCCCCchhHHHHHHHHHHhcC-----CCHHHHHHHHHHHHH
Q 024283 125 VYDRLMEGYPSEEDREAIFQAYITALK-----EDPEQYRIDAQKLEE 166 (269)
Q Consensus 125 vFd~fm~GY~peed~~~IF~Alc~Alg-----~Dp~qyR~dA~~l~~ 166 (269)
-+|.+|+||+ ++..+.+++.+++.+. .|++++.+-++.+.+
T Consensus 8 ~~~~~~~~~~-~~~~~~~~~~~~~~i~~t~~~ld~~~i~~~~~~i~~ 53 (220)
T 3etn_A 8 HHHHHENLYF-QGMIESIQELLQKEAQAVLNIPVTDAYEKAVELIVE 53 (220)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCCCTHHHHHHHHHHH
T ss_pred cccchhhHHH-HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3688999995 7899999999988765 678888887777766
No 45
>2cqm_A Ribosomal protein L17 isolog; alpha and beta (A+B), structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.188.1.1 PDB: 2ftc_J 3iy9_S
Probab=22.92 E-value=21 Score=29.09 Aligned_cols=75 Identities=15% Similarity=0.221 Sum_probs=54.5
Q ss_pred hhHHHHHHHHHHhcC---------CCHHHHHHHHHHHHHHHhcCCcc-----ccccccCCcchhHHHHHHHHHHhcCCCC
Q 024283 137 EDREAIFQAYITALK---------EDPEQYRIDAQKLEEWARGQTAS-----SLVEFPSKEGEVEGLLKDIAERASGKGN 202 (269)
Q Consensus 137 ed~~~IF~Alc~Alg---------~Dp~qyR~dA~~l~~~A~~~s~~-----~l~~~~~~~g~~~~~l~~Ia~~~~~n~~ 202 (269)
.||.+++.-|+.+|= --++.+|.-|++|.-+|+.-+.. ....|+..+.-+..++..|+.+-++ -+
T Consensus 3 ~~R~amlrnl~tsLi~herI~TT~~KAKelR~~aEklITlaK~g~~~~r~rR~a~~~l~d~~~v~KLF~elapry~~-R~ 81 (122)
T 2cqm_A 3 SGSSGLLRNLLTGLVRHERIEAPWARVDEMRGYAEKLIDYGKLGDTNERAMRMADFWLTEKDLIPKLFQVLAPRYKD-QT 81 (122)
T ss_dssp CCCSSHHHHHHHHHHHTTEEEEEHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHCCCTTHHHHHHTTHHHHHHH-SC
T ss_pred HHHHHHHHHHHHHHHhcCEEEecHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHcCCHHHHHHHHHHHHHHhcC-CC
Confidence 356666666666653 24688999999999999966644 3445777677788899999888763 44
Q ss_pred CcchhhHHHH
Q 024283 203 FSYSRFFAVG 212 (269)
Q Consensus 203 F~YSRlfAIG 212 (269)
--|+|++=+|
T Consensus 82 GGYTRI~K~~ 91 (122)
T 2cqm_A 82 GGYTRMLQIP 91 (122)
T ss_dssp SCCEEEEEEC
T ss_pred CCeeEEEECC
Confidence 5799987665
No 46
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=22.61 E-value=65 Score=28.98 Aligned_cols=57 Identities=26% Similarity=0.385 Sum_probs=37.3
Q ss_pred ccchhhHHHHHHHHhcCCCC--chhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCcc
Q 024283 116 PVFALGFVTVYDRLMEGYPS--EEDREAIFQAYITALKEDPEQYRIDAQKLEEWARGQTAS 174 (269)
Q Consensus 116 plFALG~VTvFd~fm~GY~p--eed~~~IF~Alc~Alg~Dp~qyR~dA~~l~~~A~~~s~~ 174 (269)
.|||||++ +|+.++ |.+| .++...+++.+++.-=.-|+.+-.+++.|....-...++
T Consensus 216 DiWSlGvi-lyeml~-G~~PF~~~~~~~~~~~i~~~~~~~p~~~s~~~~dli~~lL~~dp~ 274 (311)
T 4aw0_A 216 DLWALGCI-IYQLVA-GLPPFRAGNEGLIFAKIIKLEYDFPEKFFPKARDLVEKLLVLDAT 274 (311)
T ss_dssp HHHHHHHH-HHHHHH-SSCSSCCSSHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHSCSSGG
T ss_pred HHHHHHHH-HHHHHh-CCCCCCCCCHHHHHHHHHcCCCCCCcccCHHHHHHHHHHccCCHh
Confidence 49999976 566555 6666 456778888888754333555666777777655444443
No 47
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=22.25 E-value=1.1e+02 Score=23.13 Aligned_cols=43 Identities=23% Similarity=0.230 Sum_probs=32.1
Q ss_pred CCHHHHHHHHHhcCCChhhhhhhHHHHHh-------hHHHHHHHHHHHHH
Q 024283 223 TEPTVLEKLCAVLNVNKRSVDRDLDVYRN-------LLSKLLQAKELLKE 265 (269)
Q Consensus 223 ~d~~~l~~l~~~Lgls~ekv~KDL~lYrs-------nLeKmaQA~elmeE 265 (269)
.++-.+++||+.+|+|...+.+-+--+-+ +.-+|..|++++.+
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~~G~s~~~~l~~~Rl~~A~~lL~~ 74 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKE 74 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 34467888999999999988887655432 24678899998875
No 48
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=22.14 E-value=59 Score=23.09 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHH
Q 024283 223 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELL 263 (269)
Q Consensus 223 ~d~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elm 263 (269)
.|++.+++|.+ |||+.+.+.+=|....+++ ++|.+.+
T Consensus 8 ~~~~~I~~L~~-MGF~~~~a~~AL~~~~~nv---e~A~e~L 44 (63)
T 1wji_A 8 VDEKALKHITE-MGFSKEASRQALMDNGNNL---EAALNVL 44 (63)
T ss_dssp SCHHHHHHHHT-TTCCHHHHHHHHHHTTSCH---HHHHHHH
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHhCCCH---HHHHHHH
Confidence 36788999975 8999999999887776664 4565554
No 49
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=22.07 E-value=51 Score=30.35 Aligned_cols=93 Identities=12% Similarity=0.190 Sum_probs=59.7
Q ss_pred CCchhHhHHHHHhhC-CCcCCcchhHHHHHHHHHH------hhhccccccc-ccccchhhHH---HHHHHHhcCCCCchh
Q 024283 70 PPTVAETKMNFLKLY-KRPIPSIYNTVLQELIVQQ------HLMRYKRTYQ-YDPVFALGFV---TVYDRLMEGYPSEED 138 (269)
Q Consensus 70 ~~TVSDTKr~F~~~y-~rPI~sIYrrvv~ELLVE~------HLLs~n~~F~-YDplFALG~V---TvFd~fm~GY~peed 138 (269)
..|+-.|-..|+..| ++--|+.|..++++++-+. +|+. ...|+ +-..++..+. ..+..|..+|.+..+
T Consensus 220 v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~~~~ 298 (399)
T 2fji_1 220 AQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-EHSFKNKNNKFLEAMKRDFEIFYQLFVKVLDGNE 298 (399)
T ss_dssp HHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-CCCCCCGGGHHHHHHHHHHHHHHHHHHHHTTTCT
T ss_pred HHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 467888999999999 8888899998888776653 4554 55554 0146666653 345555566665443
Q ss_pred --------HHHHHHHHHHhcCCCH-HHHHHHHHHH
Q 024283 139 --------REAIFQAYITALKEDP-EQYRIDAQKL 164 (269)
Q Consensus 139 --------~~~IF~Alc~Alg~Dp-~qyR~dA~~l 164 (269)
+-...+.|.. ++.|| +.+-..-..+
T Consensus 299 ~~~~~v~~~~~~l~~l~~-L~~d~~~~i~~~~~~l 332 (399)
T 2fji_1 299 SKDTLITQNFTVMEFFMD-LSCEPIDSILDIWQKY 332 (399)
T ss_dssp THHHHHHHHHHHHHHHHH-HHHSCGGGHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH-hcCCcHHHHHHHHHHH
Confidence 3345666667 66666 6555444444
No 50
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=22.01 E-value=1.4e+02 Score=26.41 Aligned_cols=21 Identities=19% Similarity=0.589 Sum_probs=15.4
Q ss_pred cccchhhHHHHHHHHhcCCCCc
Q 024283 115 DPVFALGFVTVYDRLMEGYPSE 136 (269)
Q Consensus 115 DplFALG~VTvFd~fm~GY~pe 136 (269)
..||++|++ .|+-++.|.+|-
T Consensus 277 ~DvwSlG~i-l~ellt~~~~p~ 297 (373)
T 3c1x_A 277 SDVWSFGVL-LWELMTRGAPPY 297 (373)
T ss_dssp HHHHHHHHH-HHHHHTTSCCSC
T ss_pred HHHHHHHHH-HHHHHhCcCCCC
Confidence 358999965 677787777764
No 51
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=21.10 E-value=2.9e+02 Score=21.25 Aligned_cols=98 Identities=9% Similarity=0.101 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHHH---HHHHHHhcCCCCCcchhhHHHHHHHHH
Q 024283 141 AIFQAYITALKEDPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGLL---KDIAERASGKGNFSYSRFFAVGLFRLL 217 (269)
Q Consensus 141 ~IF~Alc~Alg~Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~l---~~Ia~~~~~n~~F~YSRlfAIGLf~LL 217 (269)
.+...+++..|.|+++++++.++... ..+... -.-..-....+.+| ..+|.+. +..|--+--+ |..|+
T Consensus 45 ~~~~~iL~~~gv~~~~l~~~l~~~l~---~~~~~~-~~~~~~s~~~~~vL~~A~~~a~~~--~~~~i~~eHl---Llall 115 (146)
T 3fh2_A 45 GVAAKALESMGISLDAVRQEVEEIIG---QGSQPT-TGHIPFTPRAKKVLELSLREGLQM--GHKYIGTEFL---LLGLI 115 (146)
T ss_dssp SHHHHHHHHTTCCHHHHHHHHHHHHC---CCSCCC-CSCCCBCHHHHHHHHHHHHHHHHT--TCSSBCHHHH---HHHHH
T ss_pred ChHHHHHHHcCCCHHHHHHHHHHHhc---cCCCCC-cCCCcCCHHHHHHHHHHHHHHHHc--CCCcCcHHHH---HHHHH
Confidence 46677889999999999998776654 121100 00011122344444 2233211 2333222222 22333
Q ss_pred hhcCCCCHHHHHHHHHhcCCChhhhhhhHHHHHh
Q 024283 218 ELANATEPTVLEKLCAVLNVNKRSVDRDLDVYRN 251 (269)
Q Consensus 218 E~~~~~d~~~l~~l~~~Lgls~ekv~KDL~lYrs 251 (269)
+.. + ....++-+.+|++.+++.++|.-+++
T Consensus 116 ~~~---~-~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 116 REG---E-GVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp HHC---S-SHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred hCC---C-cHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 221 1 14456667779999999999876654
No 52
>2oez_A UPF0289 protein VP2528; immunoglobulin fold, alpha-structure, structural genomics, P protein structure initiative; HET: MSE; 1.97A {Vibrio parahaemolyticus} SCOP: e.68.1.1
Probab=20.60 E-value=1.8e+02 Score=26.06 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHhcCCCCCcchhhHHHHHHHHHhhcCCCC--HHHHHHH---HHhcCCChhhhhhhHHHHHhhHHHHHHHH
Q 024283 186 VEGLLKDIAERASGKGNFSYSRFFAVGLFRLLELANATE--PTVLEKL---CAVLNVNKRSVDRDLDVYRNLLSKLLQAK 260 (269)
Q Consensus 186 ~~~~l~~Ia~~~~~n~~F~YSRlfAIGLf~LLE~~~~~d--~~~l~~l---~~~Lgls~ekv~KDL~lYrsnLeKmaQA~ 260 (269)
++.+++.+...+..++.+.. +.+=..||.|||...--| .+.+++| -..|.-=.+-=.=|-+.-...|++++|+.
T Consensus 22 LE~Lf~ql~~~~~~~~~~~~-~~a~~~Lfelldv~~R~dlK~eLlKeLERq~~~L~~~~~~P~Vd~~~l~~~l~~l~~~~ 100 (247)
T 2oez_A 22 VESLLRQAHLASGFADNHQY-QLFFRALFDMVEIFEQIQLKSELAKDLEKQRLSYRHWLNVEGVDQEALNSLLNEIDVVH 100 (247)
T ss_dssp HHHHHHHHHHHTTCCSTTHH-HHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHH-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHH
Confidence 55677777666655666555 777789999998886555 2333333 22222111111113334566788888887
Q ss_pred HHHHH
Q 024283 261 ELLKE 265 (269)
Q Consensus 261 elmeE 265 (269)
+-+..
T Consensus 101 ~~L~~ 105 (247)
T 2oez_A 101 SQLMG 105 (247)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66543
No 53
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=20.38 E-value=2.3e+02 Score=21.48 Aligned_cols=41 Identities=7% Similarity=0.058 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHhcCCChhhhhhhHHHHHhhHHHHHHHHHHHH
Q 024283 223 TEPTVLEKLCAVLNVNKRSVDRDLDVYRNLLSKLLQAKELLK 264 (269)
Q Consensus 223 ~d~~~l~~l~~~Lgls~ekv~KDL~lYrsnLeKmaQA~elme 264 (269)
.+++.+.++++.+|++.++++++++= ....+++++..++.+
T Consensus 104 ~~~~~l~~~a~~~Gld~~~~~~~~~s-~~~~~~v~~~~~~a~ 144 (184)
T 4dvc_A 104 KDEQELRQIFLDEGIDAAKFDAAYNG-FAVDSMVHRFDKQFQ 144 (184)
T ss_dssp SSHHHHHHHHHTTTCCHHHHHHHHTS-HHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCHHHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 46788999999999999999998842 123344444444433
No 54
>2dl0_A SAM and SH3 domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.35 E-value=58 Score=24.89 Aligned_cols=61 Identities=11% Similarity=0.119 Sum_probs=42.0
Q ss_pred CcCCcchhHHHHHHHHHHhhhcccccccc---cccchhhHHHHHHHHhcCCCCchhHHHHHHHH
Q 024283 86 RPIPSIYNTVLQELIVQQHLMRYKRTYQY---DPVFALGFVTVYDRLMEGYPSEEDREAIFQAY 146 (269)
Q Consensus 86 rPI~sIYrrvv~ELLVE~HLLs~n~~F~Y---DplFALG~VTvFd~fm~GY~peed~~~IF~Al 146 (269)
+|+++-.-.-|.|.|..++|-.|-..|.- |.+=.+--.|-=|---=|-...+||.+|..|+
T Consensus 16 ~p~~~~~~~sV~eWL~~igL~qY~~~F~~~g~d~le~l~~lt~~DL~~lGIt~~gHrkkIl~ai 79 (97)
T 2dl0_A 16 KPVSPGCISSVSDWLISIGLPMYAGTLSTAGFSTLSQVPSLSHTCLQEAGITEERHIRKLLSAA 79 (97)
T ss_dssp CCCCCSCCCSHHHHHHHHTCGGGHHHHHHHTCCSTTSGGGCCHHHHHHHTCCCHHHHHHHHHHH
T ss_pred CCCCccccCcHHHHHHHCCCHHHHHHHHHcCCCcHHHHHhcCHHHHHHCCCCCHHHHHHHHHHH
Confidence 45555444557889999999999999954 54322333455555556777778888888776
No 55
>2jxu_A TERB, KP-TERB; tellurite resistance protein, plasmid, unknown function; NMR {Klebsiella pneumoniae ntuh-k2044}
Probab=20.03 E-value=3.1e+02 Score=21.23 Aligned_cols=111 Identities=16% Similarity=0.108 Sum_probs=59.4
Q ss_pred cccchhhHHHHHHHHh--cCCCCchhHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHHhcCCccccccccCCcchhHHH
Q 024283 115 DPVFALGFVTVYDRLM--EGYPSEEDREAIFQAYITALKE---DPEQYRIDAQKLEEWARGQTASSLVEFPSKEGEVEGL 189 (269)
Q Consensus 115 DplFALG~VTvFd~fm--~GY~peed~~~IF~Alc~Alg~---Dp~qyR~dA~~l~~~A~~~s~~~l~~~~~~~g~~~~~ 189 (269)
++-|...++.+.=.+. .|--.++++..|-+-+-+-.++ +.+++++..++..+ . .+... .-+....
T Consensus 27 ~~~f~~A~~al~~~vA~ADG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~-~--~~~~~-------~~g~~~~ 96 (153)
T 2jxu_A 27 NKKFMQGTVAVCARIAVASDGVSSEEKQKMIGFLRSSEELKVFDTAEVIEFFNKLVT-S--FDFDL-------EIGKGET 96 (153)
T ss_dssp CSTTHHHHHHHHHHHHCCSSSCCSHHHHHHHHHHHHSGGGSSCCHHHHHHHHHHHHH-H--TTTCH-------HHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHHH-h--cCcch-------hhhHHHH
Confidence 4455566666665555 6887888888887766654243 45555555555441 1 11110 0023345
Q ss_pred HHHHHHHhcCCCCCcchhhHHHHHHHHH-hhc---CC---CCHHHHHHHHHhcCCChhhh
Q 024283 190 LKDIAERASGKGNFSYSRFFAVGLFRLL-ELA---NA---TEPTVLEKLCAVLNVNKRSV 242 (269)
Q Consensus 190 l~~Ia~~~~~n~~F~YSRlfAIGLf~LL-E~~---~~---~d~~~l~~l~~~Lgls~ekv 242 (269)
+..|+. .++++ .. ...++.++ +.+ |. .|...|+++++.||++...+
T Consensus 97 ~~~i~~-~~~~~--~~----~~~~l~~~~~vA~ADG~~~~~E~~~L~~ia~~Lgl~~~~~ 149 (153)
T 2jxu_A 97 MKYILA-LKDQP--EA----AQLALRVGIAVAKSDGNFDDDEKSAVREIARSLGFDPAEF 149 (153)
T ss_dssp HHHHHC-CSSSH--HH----HHHHHHHHHHHHTTTTSCSSTHHHHHHHHHHHTTSCSSCC
T ss_pred HHHHHH-HhCCH--HH----HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhCcCHHHH
Confidence 666653 22111 12 33333333 333 32 23458999999999998654
Done!