Query 024284
Match_columns 269
No_of_seqs 156 out of 438
Neff 4.7
Searched_HMMs 46136
Date Fri Mar 29 03:26:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/024284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/024284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3000 Microtubule-binding pr 100.0 6.8E-74 1.5E-78 531.5 18.0 242 1-245 1-262 (295)
2 COG5217 BIM1 Microtubule-bindi 100.0 6.2E-51 1.3E-55 373.8 4.3 233 8-245 1-273 (342)
3 PF03271 EB1: EB1-like C-termi 99.8 3.8E-20 8.2E-25 128.1 3.1 40 202-241 1-43 (43)
4 PF00307 CH: Calponin homology 99.4 8.2E-13 1.8E-17 102.4 8.6 100 16-115 1-108 (108)
5 cd00014 CH Calponin homology d 99.3 3.4E-12 7.3E-17 99.0 8.0 98 15-114 2-106 (107)
6 smart00033 CH Calponin homolog 99.0 6.9E-10 1.5E-14 85.1 7.1 91 16-108 2-98 (103)
7 COG5217 BIM1 Microtubule-bindi 98.0 7.9E-06 1.7E-10 76.7 5.0 87 13-102 126-212 (342)
8 PF11971 CAMSAP_CH: CAMSAP CH 97.4 9.6E-05 2.1E-09 58.0 2.8 75 22-96 1-82 (85)
9 PF06294 DUF1042: Domain of Un 97.4 0.00051 1.1E-08 59.4 6.8 96 19-115 1-100 (158)
10 KOG2046 Calponin [Cytoskeleton 94.4 0.13 2.8E-06 46.3 6.8 81 16-99 27-113 (193)
11 PF05622 HOOK: HOOK protein; 89.1 0.45 9.7E-06 49.7 4.2 65 18-82 11-80 (713)
12 KOG0046 Ca2+-binding actin-bun 88.6 0.57 1.2E-05 48.1 4.4 86 13-99 508-600 (627)
13 PF11414 Suppressor_APC: Adeno 85.7 2.4 5.2E-05 33.5 5.6 36 184-219 7-42 (84)
14 KOG1899 LAR transmembrane tyro 82.8 1.8 3.9E-05 45.5 4.7 37 187-223 177-213 (861)
15 KOG0046 Ca2+-binding actin-bun 82.8 0.99 2.2E-05 46.4 2.9 94 12-105 117-225 (627)
16 KOG2996 Rho guanine nucleotide 79.8 1.2 2.7E-05 46.4 2.4 53 35-87 35-89 (865)
17 PF01763 Herpes_UL6: Herpesvir 78.4 3.4 7.3E-05 42.7 5.0 37 186-222 365-401 (557)
18 COG5199 SCP1 Calponin [Cytoske 69.3 8.1 0.00017 34.2 4.4 91 17-113 16-112 (178)
19 COG5069 SAC6 Ca2+-binding acti 64.1 13 0.00028 38.3 5.3 74 34-109 151-227 (612)
20 KOG3631 Alpha-parvin and relat 62.7 31 0.00067 33.4 7.2 94 15-108 258-356 (365)
21 KOG4196 bZIP transcription fac 58.3 24 0.00051 30.3 5.1 31 187-217 84-114 (135)
22 PF14056 DUF4250: Domain of un 47.9 9.5 0.00021 28.0 1.0 22 18-39 7-28 (55)
23 PF11577 NEMO: NF-kappa-B esse 46.4 70 0.0015 24.3 5.6 26 192-217 32-57 (68)
24 COG5069 SAC6 Ca2+-binding acti 45.5 32 0.00068 35.6 4.6 101 9-114 497-610 (612)
25 PF04977 DivIC: Septum formati 45.0 42 0.00092 24.4 4.2 25 184-208 24-48 (80)
26 PF01166 TSC22: TSC-22/dip/bun 44.5 32 0.00069 25.7 3.3 28 183-210 13-40 (59)
27 PRK10803 tol-pal system protei 43.9 35 0.00075 31.7 4.3 30 183-212 60-97 (263)
28 KOG0532 Leucine-rich repeat (L 42.6 36 0.00077 36.1 4.5 55 34-88 598-655 (722)
29 PRK09413 IS2 repressor TnpA; R 42.3 43 0.00094 27.2 4.2 23 187-209 74-96 (121)
30 PF12308 Noelin-1: Neurogenesi 41.9 83 0.0018 25.9 5.6 39 182-222 38-78 (101)
31 KOG0035 Ca2+-binding actin-bun 41.7 21 0.00045 39.0 2.8 79 35-118 168-248 (890)
32 PF09006 Surfac_D-trimer: Lung 39.7 91 0.002 22.2 4.9 33 186-222 1-33 (46)
33 PF07716 bZIP_2: Basic region 38.8 62 0.0013 22.7 4.1 22 185-206 33-54 (54)
34 PF15007 CEP44: Centrosomal sp 35.2 35 0.00077 29.1 2.7 41 70-110 2-42 (131)
35 PF09701 Cas_Cmr5: CRISPR-asso 33.2 32 0.00069 28.1 2.1 15 102-116 106-120 (122)
36 PF07586 HXXSHH: Protein of un 33.2 58 0.0013 30.4 4.1 36 187-222 165-201 (302)
37 PF10146 zf-C4H2: Zinc finger- 32.4 99 0.0021 28.5 5.3 27 192-218 33-59 (230)
38 PF04728 LPP: Lipoprotein leuc 32.1 78 0.0017 23.4 3.7 23 184-206 3-25 (56)
39 KOG3000 Microtubule-binding pr 31.9 17 0.00036 35.0 0.2 94 13-118 101-215 (295)
40 smart00338 BRLZ basic region l 31.5 1.3E+02 0.0029 21.6 5.0 28 184-211 33-60 (65)
41 PF11336 DUF3138: Protein of u 30.9 73 0.0016 32.6 4.5 25 182-206 23-47 (514)
42 PF11853 DUF3373: Protein of u 28.6 34 0.00073 35.1 1.8 17 192-208 32-48 (489)
43 KOG4571 Activating transcripti 28.6 65 0.0014 31.1 3.5 29 184-213 255-283 (294)
44 COG4238 Murein lipoprotein [Ce 27.6 1.1E+02 0.0023 24.1 4.0 28 181-208 22-49 (78)
45 PF09789 DUF2353: Uncharacteri 27.4 1.1E+02 0.0024 29.8 4.9 29 187-215 143-171 (319)
46 KOG4797 Transcriptional regula 26.9 1E+02 0.0022 26.0 3.9 23 184-206 67-89 (123)
47 PF15444 TMEM247: Transmembran 24.9 5.1E+02 0.011 23.7 8.3 36 86-132 21-56 (218)
48 PF07407 Seadorna_VP6: Seadorn 24.4 94 0.002 30.8 3.8 26 182-207 37-62 (420)
49 PF11853 DUF3373: Protein of u 24.3 77 0.0017 32.6 3.4 23 183-205 30-52 (489)
50 PF11569 Homez: Homeodomain le 23.0 73 0.0016 23.5 2.2 40 73-112 9-48 (56)
51 KOG3977 Troponin I [Cytoskelet 22.4 84 0.0018 28.9 2.9 40 189-235 93-132 (221)
52 TIGR02976 phageshock_pspB phag 22.3 1.4E+02 0.0031 23.0 3.8 23 183-205 41-63 (75)
53 PF14282 FlxA: FlxA-like prote 21.7 2E+02 0.0044 23.1 4.8 23 183-205 18-40 (106)
54 PF10267 Tmemb_cc2: Predicted 21.6 4.5E+02 0.0097 26.4 8.0 12 103-114 124-135 (395)
55 TIGR01881 cas_Cmr5 CRISPR-asso 21.4 68 0.0015 26.9 2.0 51 67-117 65-124 (127)
56 PF14225 MOR2-PAG1_C: Cell mor 20.7 82 0.0018 29.5 2.6 40 63-102 17-56 (262)
57 COG2900 SlyX Uncharacterized p 20.7 3.3E+02 0.007 21.2 5.4 42 184-225 22-63 (72)
58 PF03670 UPF0184: Uncharacteri 20.1 2.9E+02 0.0064 21.9 5.2 36 182-217 24-59 (83)
No 1
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=100.00 E-value=6.8e-74 Score=531.47 Aligned_cols=242 Identities=43% Similarity=0.651 Sum_probs=195.4
Q ss_pred CCccccccc-CCCccCHHHHHHHhHhhhcCCcchhhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHH
Q 024284 1 MATNIGMMD-SAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQD 79 (269)
Q Consensus 1 m~~~~gmm~-~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~ 79 (269)
||.+|++|+ +..++||+|+|+|+|++|++|++||||||+|||||||||++|||+|||+||||+|+.||||++|||+||.
T Consensus 1 ~a~nv~~~~~s~~~~sR~E~laW~N~~l~~n~~kIEe~~tGaaycqlmd~l~p~~i~lkkVkf~A~~Ehe~i~Nfk~lQ~ 80 (295)
T KOG3000|consen 1 MAVNVYATVVSTENESRLEILAWINDLLQLNLTKIEELCTGAAYCQLMDMLFPPDIPLKKVKFAARLEHEYIPNFKVLQT 80 (295)
T ss_pred CceeeeeecccccccchHHHHHHHHhhhhcchhhhhhhcccchhhhhhhhccCCccccccccccccccchhhhhhHHHHH
Confidence 889999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCccccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccCCCCCC--CCCC---CCCCc--ccc
Q 024284 80 VFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERS--SRGS---QKISK--SLQ 152 (269)
Q Consensus 80 af~k~~I~k~ipV~kLiKgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~~~~~~--~~~~---~~~~~--s~~ 152 (269)
+|+++||+|+|||++|+||+|||||||+||||+|||+||+| .+|||++||.+.|.+.. ..++ +.|.. +.+
T Consensus 81 ~f~klgi~k~v~vdkLvKg~~qDNlEF~qWfkkffd~~~~g---~~yd~~~~R~~~~~~~~~~~~~~~~~s~p~~~~~~~ 157 (295)
T KOG3000|consen 81 CFNKLGIDKVVDVDKLVKGPFQDNLEFLQWFKKFFDANYGG---KGYDALARREGIGIGRSAISEGSKGVSAPKILSPVS 157 (295)
T ss_pred HHHhcCCcccccHHHHhcccccchHHHHHHHHHHhhccCCc---cccCHHHHhhcccccccCcccccccccccccccccc
Confidence 99999999999999999999999999999999999999997 69999999965432221 1111 11111 000
Q ss_pred cCCCCC-CCCCCCCCCCCCCCccc---c-----ccCCCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhcC
Q 024284 153 TNNMHN-AGSGDIGHSKISGPRQA---K-----IYGANSAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQT 223 (269)
Q Consensus 153 ~~~~~~-~~~~~~~~~~~s~p~~~---~-----~~~~~~~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~ 223 (269)
++.+.. ++.+.+...+.+.|+.. + .+.....+++.+|.+|+.+++.++++||+||||||+|||+||||||+
T Consensus 158 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qe~~~l~~~l~~~~~~~~~le~ERdfyf~kLr~iEil~q~ 237 (295)
T KOG3000|consen 158 SAAPQNFVPARTPQTLRNNKPCVEFGGKPNIALYPVDKLKQELEELTQQLTELKTTIASLEKERDFYFSKLRDIEILCQT 237 (295)
T ss_pred ccCcccCCCccCcccccCCCCCcccccccccccccchhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccchhhhccC
Confidence 000000 01111111111122211 1 01123478999999999999999999999999999999999999998
Q ss_pred -CCCCChh--HHHHHhhhhhccccc
Q 024284 224 -PELENLP--VRISGLLILIILHFS 245 (269)
Q Consensus 224 -~e~e~~~--~~~~I~~ILYaT~~~ 245 (269)
++.+..| .+++|+.|||+|++.
T Consensus 238 ~~~~e~~~~~~v~rI~~ilyat~~g 262 (295)
T KOG3000|consen 238 SPDPESIPNVMVKRILSILYATEEG 262 (295)
T ss_pred CCccccccHHHHHHHHHHHhhhhcc
Confidence 5666777 899999999999863
No 2
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=100.00 E-value=6.2e-51 Score=373.82 Aligned_cols=233 Identities=30% Similarity=0.321 Sum_probs=173.3
Q ss_pred ccCCCccCHHHHHHHhHhhhcCCcchhhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcc
Q 024284 8 MDSAYFVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIE 87 (269)
Q Consensus 8 m~~~~~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~I~ 87 (269)
||.+..-||.|||.|+|-++.++|++||+|+.|+|||||||+|| +.+||++|+|++..||+|..|+||||.+|.+.||+
T Consensus 1 ~~~~l~esr~ell~w~N~v~~L~l~rIEdcg~g~am~qI~dsiY-~Dlp~~~V~f~~~aey~~~~n~kILq~~Fs~~Gid 79 (342)
T COG5217 1 CDKALVESREELLFWENVVVRLDLQRIEDCGEGFAMQQIHDSIY-VDLPDSLVRFPWIAEYKHPGNGKILQLLFSDYGID 79 (342)
T ss_pred CcchhhhhHHHHHHHHHHHhhcCceehhhhccchhHHHHHHHHh-ccCcHhhccccchhheecCCchhHHHHHHHhcCcc
Confidence 56777789999999999999999999999999999999999999 78999999999999999999999999999999999
Q ss_pred ccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhhccCCCCCCCCCCCCCCccc--ccC--CCCCCCCCC
Q 024284 88 KHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERRCKGGKERSSRGSQKISKSL--QTN--NMHNAGSGD 163 (269)
Q Consensus 88 k~ipV~kLiKgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR~~~~~~~~~~~~~~~~~s~--~~~--~~~~~~~~~ 163 (269)
|.+.|++|+.|++|||||||||+|++|++|+++ -.|||.+||.+.++.... .....+++. +++ +..+.++++
T Consensus 80 k~v~v~~lvrck~qdnLeflQwlk~hWvr~~~~---~~yd~~arr~~r~p~~tr-~~~~~~rs~~~p~sa~r~~s~G~~s 155 (342)
T COG5217 80 KAVLVLVLVRCKLQDNLEFLQWLKDHWVRNLGH---ISYDRNARRLGRTPKSTR-ELIEWIRSLGIPISAIRELSKGVAS 155 (342)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhCCC---CccChhHHhcCCCcchHH-HHHhhhhhcCCchhhhhhhccCccc
Confidence 999999999999999999999999999999997 489999999654321111 000000000 000 000011111
Q ss_pred CC--CCCC-CCCccccccCCCC----------HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhcCC------
Q 024284 164 IG--HSKI-SGPRQAKIYGANS----------AQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTP------ 224 (269)
Q Consensus 164 ~~--~~~~-s~p~~~~~~~~~~----------~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~------ 224 (269)
.. ++.. |-|....+..+.. ++++..|+.++.+.+.++-+||.||+|||+|||+||||+|..
T Consensus 156 ~~sl~t~hss~~~N~v~~ta~t~~~Lra~qa~Qe~igSln~~ly~~~~t~~~le~er~fYfnKlr~ieilv~t~k~~~~~ 235 (342)
T COG5217 156 CKSLSTIHSSFPQNFVKNTAGTHDYLRAMQACQEFIGSLNIKLYFPVDTLVKLEMERAFYFNKLRSIEILVETLKREGPR 235 (342)
T ss_pred chhhhhhhcccccccccCcchhHHHHHHHHHHHHHhhccceeeeeeccccceeeeHHHHHhhhcchhHHHHHHHhhhCcc
Confidence 00 1111 1111111111111 334445666777778899999999999999999999999971
Q ss_pred ------------CCCC-----hhHHHHHhhhhhccccc
Q 024284 225 ------------ELEN-----LPVRISGLLILIILHFS 245 (269)
Q Consensus 225 ------------e~e~-----~~~~~~I~~ILYaT~~~ 245 (269)
+..+ +...++|++|||+|++-
T Consensus 236 ~~~~~~~~~~~~h~~~t~~~m~~~~~rI~~ily~ta~g 273 (342)
T COG5217 236 ASILPGTSLQCPHCKNTREIMDAKDNRIKEILYMTASG 273 (342)
T ss_pred ccccCCccccCCccCCCHHHHHHHHHHHHHHHHHhhhh
Confidence 1111 13589999999999863
No 3
>PF03271 EB1: EB1-like C-terminal motif; InterPro: IPR004953 A group of microtubule-associated proteins called +TIPs (plus end tracking proteins), including EB1 (end-binding protein 1) family proteins, label growing microtubules ends specifically in diverse organisms and are implicated in spindle dynamics, chromosome segregation, and directing microtubules toward cortical sites. EB1 members have a bipartite composition: the N-terminal CH domain (IPR001715 from INTERPRO) mediates microtubule plus end localization and a C-terminal cargo binding domain (EB1-C) that captures cell polarity determinants. The EB1-C domain comprises a unique EB1-like sequence motif that acts as a binding site for other +TIP proteins. It interacts with the carboxy terminus of the adenomatous polyposis coli (APC) tumor suppressor, a well conserved +TIP phosphoprotein with a pivotal function in cell cycle regulation. Another binding partner of the EB1-C domain is the well conserved +TIP protein dynactin, a component of the large cytoplasmic dynein/dynactin complex [, , ]. The ~80-residue EB1-C domain starts with a long smoothly curved helix (alpha1), which is followed by a hairpin connection leading to a short second helix (alpha2) running antiparallel to alpha1. The two parallel alpha1 helices of the EB1-C domain dimer wrap around each other in a slightly left-handed supercoil. The two alpha2 helices run antiparallel to helices alpha1 and form a similar fork in the opposite orientation and rotated by 90 degrees. As a result, two helical segments from each monomer form a four-helix bundle. The side chain forming the hydrophobic core of this bundle are highly conserved [, , ]. Some protein known to contain an EB1-C domain are listed below: Yeast protein BIM1. Fission yeast microtubule integrity protein mal3. Vertebrate microtubule-associated protein RP/EB family member 1 (EB1). Vertebrate microtubule-associated protein RP/EB family member 2 (EB2 or RP1). Vertebrate microtubule-associated protein RP/EB family member 3 (EBF3). ; GO: 0008017 microtubule binding; PDB: 3TQ7_B 4E61_B 2HKQ_A 1YIG_B 3GJO_B 2HL5_B 1YIB_A 1WU9_A 1TXQ_B.
Probab=99.79 E-value=3.8e-20 Score=128.08 Aligned_cols=40 Identities=60% Similarity=0.742 Sum_probs=34.4
Q ss_pred HHHHhhHHHHHHhHHHHHHhcC-CCCCCh--hHHHHHhhhhhc
Q 024284 202 LLEKERDFYFAKLRDIEILCQT-PELENL--PVRISGLLILII 241 (269)
Q Consensus 202 ~LEkERDFYF~KLRdIEiLcQ~-~e~e~~--~~~~~I~~ILYa 241 (269)
+||+||||||+||||||+|||+ .+.++. +++++|++||||
T Consensus 1 ~le~ERdFYf~KLR~IE~l~q~~~~~~~~~~~~~~~I~~ILYa 43 (43)
T PF03271_consen 1 SLEKERDFYFNKLRDIEILCQEANESENEPKDLIKKIQEILYA 43 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCHHCCTC--HHHHHHHHHHC
T ss_pred CchHHHHHHHHHHHHHHHHHhhccccCcchhHHHHHHHHHhcC
Confidence 6899999999999999999999 444444 489999999997
No 4
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []. It comprises the following groups of actin-binding domains: Actinin-type (including spectrin, fimbrin, ABP-280) (see IPR001589 from INTERPRO). Calponin-type (see IPR000557 from INTERPRO). A comprehensive review of proteins containing this type of actin-binding domains is given in []. The CH domain is involved in actin binding in some members of the family. However in calponins there is evidence that the CH domain is not involved in its actin binding activity []. Most proteins have two copies of the CH domain, however some proteins such as calponin and the human vav proto-oncogene (P15498 from SWISSPROT) have only a single copy. The structure of an example CH-domain has recently been solved []. This entry represents the calponin-homology (CH) domain, a superfamily of actin-binding domains found in cytoskeletal proteins (contain two CH domain in tandem repeat), in regulatory proteins from muscle, and in signal transduction proteins. This domain has a core structure consisting of a 4-helical bundle. This domain is found in: Calponin, which is involved in the regulation of contractility and organisation of the actin cytoskeleton in smooth muscle cells []. Beta-spectrin, a major component of a submembrane cytoskeletal network connecting actin filaments to integral plasma membrane proteins []. The actin-cross-linking domain of the fimbrin/plastin family of actin filament bundling or cross-linking proteins []. Utrophin,a close homologue of dystrophin []. Dystrophin, the protein found to be defective in Duchenne muscular dystrophy; this protein contains a tandem repeat of two CH domains []. Actin-binding domain of plectin, a large and widely expressed cytolinker protein []. The N-terminal microtubule-binding domain of microtubule-associated protein eb1 (end-binding protein), a member of a conserved family of proteins that localise to the plus-ends of microtubules []. Ras GTPase-activating-like protein rng2, an IQGAP protein that is essential for the assembly of an actomyosin ring during cytokinesis []. Transgelin, which suppresses androgen receptor transactivation []. ; GO: 0005515 protein binding; PDB: 2DK9_A 1WYL_A 1WKU_B 1TJT_A 3FER_A 2WA7_A 2WA5_A 2WA6_A 2R0O_A 1PXY_A ....
Probab=99.42 E-value=8.2e-13 Score=102.42 Aligned_cols=100 Identities=31% Similarity=0.594 Sum_probs=86.7
Q ss_pred HHHHHHHhHhhhc-----CCcchh-hhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHh-cCccc
Q 024284 16 RNELLTWINNRLQ-----LHLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNK-LKIEK 88 (269)
Q Consensus 16 R~eLL~WiN~~L~-----~~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k-~~I~k 88 (269)
+.+|+.|||+.|. ..++.+ +++.+|.++|+|++.+.|+.|++++++=+.++..+.++|..++-++.++ +|++.
T Consensus 1 e~~ll~Win~~l~~~~~~~~v~~~~~~l~dG~~L~~Li~~l~p~~i~~~~~~~~~~~~~~~~~Ni~~~l~~~~~~lg~~~ 80 (108)
T PF00307_consen 1 EKELLKWINSHLEKYGKGRRVTNFSEDLRDGVVLCKLINKLFPGTIDLKKINPNLKSPFDKLENIELALEAAEKKLGIPP 80 (108)
T ss_dssp HHHHHHHHHHHHTTSTTTSTCSSTSGGGTTSHHHHHHHHHHSTTSSSGGGSSTSSSSHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHHcccccCCCCcCcHHHHhcCHHHHHHHHHHHhhccchhhhccccchhhhHHHHHHHHHHHHHHHHcCCCC
Confidence 4689999999995 457777 9999999999999999999999999821112788999999999999999 99999
Q ss_pred cccccccc-cCCCcchHHHHHHHHHHHh
Q 024284 89 HIEVNKLV-KGRPLDNLEFLQWLKRYCD 115 (269)
Q Consensus 89 ~ipV~kLi-Kgk~qdNlEFlQWfk~f~d 115 (269)
.+.++.|+ +|+.+..+.|+.+++.+|.
T Consensus 81 ~~~~~dl~~~~~~~~vl~~l~~l~~~~e 108 (108)
T PF00307_consen 81 LLSPEDLVEKGDEKSVLSFLWQLFRYFE 108 (108)
T ss_dssp TS-HHHHHSTT-HHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 99999999 9999999999999999874
No 5
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity). The CH domain is found in cytoskeletal and signal transduction proteins, including actin-binding proteins like spectrin, alpha-actinin, dystrophin, utrophin, and fimbrin, proteins essential for regulation of cell shape (cortexillins), and signaling proteins (Vav).
Probab=99.34 E-value=3.4e-12 Score=99.03 Aligned_cols=98 Identities=24% Similarity=0.381 Sum_probs=89.7
Q ss_pred CHHHHHHHhHhhhcCCcc-hh----hhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc
Q 024284 15 GRNELLTWINNRLQLHLS-RI----EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH 89 (269)
Q Consensus 15 sR~eLL~WiN~~L~~~~~-kI----Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~I~k~ 89 (269)
.+.+++.|||..+..... .+ +++.+|.+.|+|++.++|+.++..+++ +....+.++|....-++.+++||+..
T Consensus 2 ~~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~Ll~~~~p~~~~~~~~~--~~~~~~~~~Ni~~~l~~~~~~gi~~~ 79 (107)
T cd00014 2 QKEELLRWINKVLGEYGPVTINNFSTDLKDGIALCKLLNSLSPDLIDKKKIN--PLSRFKRLENINLALNFAEKLGVPVV 79 (107)
T ss_pred hHHHHHHHHHHHhccCCCccHHHHHHHHhchHHHHHHHHHHCcccccccccc--ccchhhHHHHHHHHHHHHHHcCCcee
Confidence 468999999999988775 55 899999999999999999999887765 88899999999999999999999998
Q ss_pred -ccccccc-cCCCcchHHHHHHHHHHH
Q 024284 90 -IEVNKLV-KGRPLDNLEFLQWLKRYC 114 (269)
Q Consensus 90 -ipV~kLi-Kgk~qdNlEFlQWfk~f~ 114 (269)
+..+.|+ +|.....+.++.++..+|
T Consensus 80 ~~~~~Dl~~~~n~~~vl~~l~~l~~~~ 106 (107)
T cd00014 80 NFDAEDLVEDGDEKLVLGLLWSLIRKF 106 (107)
T ss_pred ccCHHHHhhCCCceeeHHHHHHHHHhh
Confidence 9999999 999999999999998876
No 6
>smart00033 CH Calponin homology domain. Actin binding domains present in duplicate at the N-termini of spectrin-like proteins (including dystrophin, alpha-actinin). These domains cross-link actin filaments into bundles and networks. A calponin homology domain is predicted in yeasst Cdc24p.
Probab=99.03 E-value=6.9e-10 Score=85.12 Aligned_cols=91 Identities=25% Similarity=0.346 Sum_probs=77.3
Q ss_pred HHHHHHHhHhhhcCCc-ch----hhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCc-ccc
Q 024284 16 RNELLTWINNRLQLHL-SR----IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKI-EKH 89 (269)
Q Consensus 16 R~eLL~WiN~~L~~~~-~k----IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~I-~k~ 89 (269)
+.+++.|+|..|.... .. .+++++|.+.|+|++.++|+.++.+++. .++...+.++|.....++.++.|+ ...
T Consensus 2 ~~~l~~Win~~l~~~~~~~v~~~~~~l~dG~~L~~L~~~l~p~~i~~~~~~-~~~~~~~~~~Ni~~~l~~~~~~g~~~~~ 80 (103)
T smart00033 2 EKTLLRWVNSLLAEYGKPPVTNFSSDLSDGVALCKLLNSLSPGSVDKKKVN-ASLSRFKKIENINLALSFAEKLGGKLVL 80 (103)
T ss_pred hHHHHHHHHHHcccCCCCcHHHHHHHHccHHHHHHHHHHHCCCcCChhhcc-ccccHHHHHHhHHHHHHHHHHcCCeeec
Confidence 6789999999998753 22 5789999999999999999999987766 677789999999999999999996 467
Q ss_pred ccccccccCCCcchHHHHH
Q 024284 90 IEVNKLVKGRPLDNLEFLQ 108 (269)
Q Consensus 90 ipV~kLiKgk~qdNlEFlQ 108 (269)
|..+.|+.|+ .+.+-++.
T Consensus 81 ~~~~Dl~~~~-k~~~~v~~ 98 (103)
T smart00033 81 FEPEDLVEGN-KLILGVIW 98 (103)
T ss_pred cCHHHHhhcc-hHHHHHHH
Confidence 8899999998 66665554
No 7
>COG5217 BIM1 Microtubule-binding protein involved in cell cycle control [Cell division and chromosome partitioning / Cytoskeleton]
Probab=97.99 E-value=7.9e-06 Score=76.75 Aligned_cols=87 Identities=24% Similarity=0.369 Sum_probs=77.6
Q ss_pred ccCHHHHHHHhHhhhcCCcchhhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccccccc
Q 024284 13 FVGRNELLTWINNRLQLHLSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEV 92 (269)
Q Consensus 13 ~~sR~eLL~WiN~~L~~~~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~I~k~ipV 92 (269)
-.+++|++.|+- ++..-.+.++++++|++.|..+-.+| .+.|-.-|+ ++..+++|+.|.++.|+.+..+++..+.|+
T Consensus 126 p~~tr~~~~~~r-s~~~p~sa~r~~s~G~~s~~sl~t~h-ss~~~N~v~-~ta~t~~~Lra~qa~Qe~igSln~~ly~~~ 202 (342)
T COG5217 126 PKSTRELIEWIR-SLGIPISAIRELSKGVASCKSLSTIH-SSFPQNFVK-NTAGTHDYLRAMQACQEFIGSLNIKLYFPV 202 (342)
T ss_pred cchHHHHHhhhh-hcCCchhhhhhhccCcccchhhhhhh-ccccccccc-CcchhHHHHHHHHHHHHHhhccceeeeeec
Confidence 358899999998 68889999999999999999988887 556766666 566789999999999999999999999999
Q ss_pred cccccCCCcc
Q 024284 93 NKLVKGRPLD 102 (269)
Q Consensus 93 ~kLiKgk~qd 102 (269)
+.|+++++++
T Consensus 203 ~t~~~le~er 212 (342)
T COG5217 203 DTLVKLEMER 212 (342)
T ss_pred cccceeeeHH
Confidence 9999999998
No 8
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins.
Probab=97.44 E-value=9.6e-05 Score=57.99 Aligned_cols=75 Identities=19% Similarity=0.501 Sum_probs=55.7
Q ss_pred HhHhhhcCCcchh----hhcCCchhhhhhhhhhCCCCcccccccccCC-ChHHHHHHHHHHHHHHHh-cCccc-cccccc
Q 024284 22 WINNRLQLHLSRI----EEAASGAVQCQMLDMTYPGVVPMHKVNFDAK-TEYDMIQNYKVLQDVFNK-LKIEK-HIEVNK 94 (269)
Q Consensus 22 WiN~~L~~~~~kI----Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~-~e~e~~~N~KiLQ~af~k-~~I~k-~ipV~k 94 (269)
|+|....-....| .++++|++-|++++-.+|+.||++.|++.+. +..+.+.|..+|++.-.+ +|... ++.++.
T Consensus 1 ~~~~~~~~~~~~v~dl~~~l~DG~~Lc~Lih~Y~P~~l~~~~I~~~~~mS~~~~l~N~~ll~~~c~~~l~~~~~~l~~ed 80 (85)
T PF11971_consen 1 WVNARCAPYFPPVEDLTQDLSDGRALCALIHFYCPQLLPLEDICLKTTMSQADSLYNLQLLNSFCQSHLGFSCCHLEPED 80 (85)
T ss_pred CCCcccCCCCcchhhhhhhhccHHHHHHHHHHhCcceecHhHcccccchHHHHhhhhHHHHHHHHHHHcCCCcCcCCHHH
Confidence 4444443444444 4569999999999999999999999999755 677899999999998766 56553 345554
Q ss_pred cc
Q 024284 95 LV 96 (269)
Q Consensus 95 Li 96 (269)
|.
T Consensus 81 l~ 82 (85)
T PF11971_consen 81 LL 82 (85)
T ss_pred Hh
Confidence 43
No 9
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function.; PDB: 2EE7_A.
Probab=97.37 E-value=0.00051 Score=59.36 Aligned_cols=96 Identities=21% Similarity=0.402 Sum_probs=66.8
Q ss_pred HHHHhHh-hhcCCcchh-hhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHH-HHHHHhcCcccc-ccccc
Q 024284 19 LLTWINN-RLQLHLSRI-EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVL-QDVFNKLKIEKH-IEVNK 94 (269)
Q Consensus 19 LL~WiN~-~L~~~~~kI-Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiL-Q~af~k~~I~k~-ipV~k 94 (269)
|+.||++ -|......+ .++++|...+.|+...||..|+|+.-. ++..-.-.+.||..| +.+|+|+|+... =.++.
T Consensus 1 l~~WL~~l~ls~~~~n~~rDfsdG~lvAEIl~~y~p~~vdlh~y~-~~~s~~~Kl~NW~~Ln~kvl~kl~~~l~~~~i~~ 79 (158)
T PF06294_consen 1 LLKWLQSLDLSRPPKNIRRDFSDGYLVAEILSRYYPKLVDLHNYS-NGNSVAQKLNNWETLNEKVLKKLGIKLDKEDIEG 79 (158)
T ss_dssp HHHHHHHS--S--SS-HHHHHTTSHHHHHHHHHH-TTT---SS-----SSHHHHHHHHHHHHHHTTGGGT----HHHHHH
T ss_pred ChHHHhcCCCCCCCCchHHHcccccHHHHHHHHHCCCCccccccC-CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 6899998 333344455 499999999999999999999997633 355666799999999 999999998744 34789
Q ss_pred cccCCCcchHHHHHHHHHHHh
Q 024284 95 LVKGRPLDNLEFLQWLKRYCD 115 (269)
Q Consensus 95 LiKgk~qdNlEFlQWfk~f~d 115 (269)
++.|+...=-.+|.=++.+..
T Consensus 80 i~~~~~Gaae~lL~~L~~~l~ 100 (158)
T PF06294_consen 80 IINCKPGAAESLLYQLYTKLT 100 (158)
T ss_dssp HHTT-TTTTHHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 999999888888888877764
No 10
>KOG2046 consensus Calponin [Cytoskeleton]
Probab=94.42 E-value=0.13 Score=46.34 Aligned_cols=81 Identities=22% Similarity=0.426 Sum_probs=62.0
Q ss_pred HHHHHHHhHhhhcCCcc----hhhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc--
Q 024284 16 RNELLTWINNRLQLHLS----RIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH-- 89 (269)
Q Consensus 16 R~eLL~WiN~~L~~~~~----kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~I~k~-- 89 (269)
..||+.||-.++.+... =.+.|-+|...|.|++.|+|++++ +...++...-.+.|..=+..+.++.|++..
T Consensus 27 ~~el~~WI~~~~~~~~~~~~~f~~~LKDG~iLCkl~N~l~p~~~~---~~~~s~~~f~qmEnIs~Fi~a~~~ygv~~~d~ 103 (193)
T KOG2046|consen 27 EKELREWIENVVLTELPARGDFQDLLKDGVILCKLINKLYPGVVK---KINESKMAFVQMENISNFIKAAKKYGVPEVDL 103 (193)
T ss_pred HHHHHHHHHHhhccCCCcccCHHHHHcchHHHHHHHHHhCcCccc---ccccccccHHHHHHHHHHHHHHHhcCCChhhc
Confidence 46899999986433221 257899999999999999996554 344778888888888888899999999863
Q ss_pred ccccccccCC
Q 024284 90 IEVNKLVKGR 99 (269)
Q Consensus 90 ipV~kLiKgk 99 (269)
++-..|--+|
T Consensus 104 FqtvDLfE~k 113 (193)
T KOG2046|consen 104 FQTVDLFEGK 113 (193)
T ss_pred ccccccccCC
Confidence 6666777775
No 11
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=89.07 E-value=0.45 Score=49.69 Aligned_cols=65 Identities=20% Similarity=0.352 Sum_probs=41.7
Q ss_pred HHHHHhHhh-hcCCcchhhhcCCchhhhhhhhhhCCCCcc---cccccccCCChHH-HHHHHHHHHHHHH
Q 024284 18 ELLTWINNR-LQLHLSRIEEAASGAVQCQMLDMTYPGVVP---MHKVNFDAKTEYD-MIQNYKVLQDVFN 82 (269)
Q Consensus 18 eLL~WiN~~-L~~~~~kIEel~sGaayCQlmd~l~Pg~v~---l~kVkf~a~~e~e-~~~N~KiLQ~af~ 82 (269)
-||.|||.. +...+..+++|++|++.=++|..|-|...+ +.+|+=++...+- .++|+|.|=..+.
T Consensus 11 ~Lv~Wv~tf~~~~~~~~~~dL~DGv~L~evL~qIDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~ 80 (713)
T PF05622_consen 11 SLVTWVQTFNLSAPCSSYEDLSDGVALAEVLHQIDPEYFNDSWLSRIKEDVGDNWRLRVSNLKKLLRNIK 80 (713)
T ss_dssp HHHHHHTT---SS---SHHHHTTSHHHHHHHHHH-TTTS-HHHHTT--SGGGG-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHccchHHHHHHHHHhCccccCcHHhhcCCCCCCccHHHHHHHHHHHHHHHH
Confidence 489999973 344578899999999999999999998665 4566544333222 6799987766443
No 12
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=88.62 E-value=0.57 Score=48.11 Aligned_cols=86 Identities=21% Similarity=0.312 Sum_probs=69.4
Q ss_pred ccCHHHHHHHhHhhhcC-----Ccchh--hhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcC
Q 024284 13 FVGRNELLTWINNRLQL-----HLSRI--EEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLK 85 (269)
Q Consensus 13 ~~sR~eLL~WiN~~L~~-----~~~kI--Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~ 85 (269)
-++-.++++|+|+.|.- .+... -.+++|...--++|+|-||+|+-+=|+ ..+++.|...|-|..=.+=+|+|
T Consensus 508 ~~tD~dIv~WaN~klk~~Gk~s~IrSFkD~siS~g~~vLDLidaI~P~~Vn~~LV~-~G~t~EdK~~NAkYaIS~ARKiG 586 (627)
T KOG0046|consen 508 DITDSDIVNWANRKLKKAGKKSQIRSFKDKSISDGLFVLDLLDAIKPGVVNYSLVT-SGNTDEEKLLNAKYAISVARKLG 586 (627)
T ss_pred CCcHHHHHHHHHHHHHhcCCccccccccCcccccCcchHHHHhhcCcCccchhhcc-CCCChhhhhhcchhhHhHHHhhC
Confidence 56789999999999943 33333 358899999999999999999888777 45589999999999999999999
Q ss_pred ccccccccccccCC
Q 024284 86 IEKHIEVNKLVKGR 99 (269)
Q Consensus 86 I~k~ipV~kLiKgk 99 (269)
-..+.=.|.++.-+
T Consensus 587 a~IyaLPEDIvEV~ 600 (627)
T KOG0046|consen 587 ASIYALPEDIVEVN 600 (627)
T ss_pred ceEEeccHHHhhhc
Confidence 88765555555443
No 13
>PF11414 Suppressor_APC: Adenomatous polyposis coli tumour suppressor protein; PDB: 1M5I_A.
Probab=85.69 E-value=2.4 Score=33.46 Aligned_cols=36 Identities=25% Similarity=0.482 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHH
Q 024284 184 QEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEI 219 (269)
Q Consensus 184 ~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEi 219 (269)
..+++|.+|-.-|-.-+|-+|++||.|+..|+.+--
T Consensus 7 k~mkeLEqEkd~LLqgLe~~Er~r~Wy~~qL~~vq~ 42 (84)
T PF11414_consen 7 KRMKELEQEKDVLLQGLEMEERERDWYQQQLQSVQE 42 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 356788888888888899999999999999998754
No 14
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=82.78 E-value=1.8 Score=45.53 Aligned_cols=37 Identities=41% Similarity=0.395 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhcC
Q 024284 187 QALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQT 223 (269)
Q Consensus 187 ~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~ 223 (269)
-+|++++.+||+...+||||+.=|=.|||+-|-|.|+
T Consensus 177 lDLmaevSeLKLkltalEkeq~e~E~K~R~se~l~qe 213 (861)
T KOG1899|consen 177 LDLMAEVSELKLKLTALEKEQNETEKKLRLSENLMQE 213 (861)
T ss_pred hHHHHHHHHhHHHHHHHHHHhhhHHHHHHhHHHHHHH
Confidence 4688999999999999999999999999999999987
No 15
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=82.76 E-value=0.99 Score=46.42 Aligned_cols=94 Identities=15% Similarity=0.275 Sum_probs=75.1
Q ss_pred CccCHHHHHHHhHhhhcCC-------------cchhhhcCCchhhhhhhhhhCCCCcccccccccC-CChHHHHHHHHHH
Q 024284 12 YFVGRNELLTWINNRLQLH-------------LSRIEEAASGAVQCQMLDMTYPGVVPMHKVNFDA-KTEYDMIQNYKVL 77 (269)
Q Consensus 12 ~~~sR~eLL~WiN~~L~~~-------------~~kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a-~~e~e~~~N~KiL 77 (269)
+---|.+...|||..|.-+ ..=.+.|.+|..-|.+++.--||.|+=+-++..- =+.++...|..+.
T Consensus 117 ~eeEk~~fv~hIN~~L~~Dpdl~~~lPinp~t~~lf~~vkDGvlLcKlIN~svPdTIDERaiN~kk~Lnp~~~~EN~~l~ 196 (627)
T KOG0046|consen 117 NEEEKRAFVNHINSYLEGDPDLKHLLPINPNTNDLFDLVKDGVLLCKLINLSVPDTIDERAINTKKKLNPFERNENLNLA 196 (627)
T ss_pred cHHHHHHHHHHHHHHhcCCcchhhcCCCCCchHHHHHHhccceeeehhhcccCCCchhhhhhccCCcCChhhhccchhhH
Confidence 3334889999999998653 2346899999999999999999999988887643 3688999999998
Q ss_pred HHHHHhcCcc-ccccccccccCCCcchHH
Q 024284 78 QDVFNKLKIE-KHIEVNKLVKGRPLDNLE 105 (269)
Q Consensus 78 Q~af~k~~I~-k~ipV~kLiKgk~qdNlE 105 (269)
=+.-+..|+. ..|.-+.|..||.--=|-
T Consensus 197 lnSAkAiGc~VvNIga~Dl~eGrphLVLG 225 (627)
T KOG0046|consen 197 LNSAKAIGCTVVNIGAQDLAEGRPHLVLG 225 (627)
T ss_pred HhhcccccceEEecCchhhhcCCceeeHH
Confidence 8888888876 468888999998644333
No 16
>KOG2996 consensus Rho guanine nucleotide exchange factor VAV3 [Signal transduction mechanisms]
Probab=79.77 E-value=1.2 Score=46.43 Aligned_cols=53 Identities=15% Similarity=0.421 Sum_probs=41.6
Q ss_pred hhcCCchhhhhhhhhhCCCCcccccccccCC-ChHHHHHHHHHHHH-HHHhcCcc
Q 024284 35 EEAASGAVQCQMLDMTYPGVVPMHKVNFDAK-TEYDMIQNYKVLQD-VFNKLKIE 87 (269)
Q Consensus 35 Eel~sGaayCQlmd~l~Pg~v~l~kVkf~a~-~e~e~~~N~KiLQ~-af~k~~I~ 87 (269)
.-|.+|+--|||++-|-|++|++++|++.+. +..=+++|.+.+-. +-.+.|+.
T Consensus 35 q~LRDGvLLCqLlnnL~p~sIdlkeIn~rpQmSqFLClkNIrtFl~~C~~~Fglr 89 (865)
T KOG2996|consen 35 QALRDGVLLCQLLNNLVPHSIDLKEINLRPQMSQFLCLKNIRTFLMFCCEKFGLR 89 (865)
T ss_pred HHHhhhhHHHHHHhhcCCCcccHHHhhcCCCccchhhHhhHHHHHHHHHHHhCCc
Confidence 4588999999999999999999999999876 45678888876433 34444543
No 17
>PF01763 Herpes_UL6: Herpesvirus UL6 like; InterPro: IPR002660 This family consists of various proteins from the Herpesviridae that are similar to Human herpesvirus 1 (HHV-1) UL6 virion protein. UL6 is essential for cleavage and packaging of the viral genome [].; GO: 0006323 DNA packaging
Probab=78.40 E-value=3.4 Score=42.73 Aligned_cols=37 Identities=22% Similarity=0.211 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhc
Q 024284 186 VQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQ 222 (269)
Q Consensus 186 i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ 222 (269)
+.=|++|++++=.+|++|++||+.|=.|+|++|....
T Consensus 365 ~kcLe~qIn~qf~tIe~Lk~~n~~~~~kl~~~e~~L~ 401 (557)
T PF01763_consen 365 NKCLEGQINNQFDTIEDLKEENQDLEKKLRELESELS 401 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3458899999999999999999999999999999755
No 18
>COG5199 SCP1 Calponin [Cytoskeleton]
Probab=69.28 E-value=8.1 Score=34.15 Aligned_cols=91 Identities=18% Similarity=0.331 Sum_probs=61.3
Q ss_pred HHHHHHhHhhhcCCcc----hhhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc--c
Q 024284 17 NELLTWINNRLQLHLS----RIEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH--I 90 (269)
Q Consensus 17 ~eLL~WiN~~L~~~~~----kIEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~I~k~--i 90 (269)
+|.--||-.+|...+. -++.|-+|+..|.|+.-.-|+.|.-+ ..+...--..|.--+=+..+|++|+-+ +
T Consensus 16 kev~~Wie~~l~~k~~ppgdll~~lkdGv~lCril~ea~~~~I~yK----eSkmpFVQmenIs~Fin~~~k~~vpe~elF 91 (178)
T COG5199 16 KEVTLWIETVLGEKFEPPGDLLSLLKDGVRLCRILNEASPLDIKYK----ESKMPFVQMENISSFINGLKKLRVPEYELF 91 (178)
T ss_pred HHHHHHHHHHHHhhhCCcccHHHHHhcchHHHHHHhhcCcccceec----ccCCceeeHHHHHHHHHHHHHhCCCHHHHH
Confidence 6888999999976543 48999999999999999998874322 244444556677777788899987642 3
Q ss_pred cccccccCCCcchHHHHHHHHHH
Q 024284 91 EVNKLVKGRPLDNLEFLQWLKRY 113 (269)
Q Consensus 91 pV~kLiKgk~qdNlEFlQWfk~f 113 (269)
....|...| |--..++-+|.+
T Consensus 92 QT~DLFE~k--d~~qV~~~l~sl 112 (178)
T COG5199 92 QTNDLFEAK--DLRQVVICLYSL 112 (178)
T ss_pred HhhhHHhhc--CHHHHHHHHHHH
Confidence 333444333 222355666555
No 19
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=64.15 E-value=13 Score=38.27 Aligned_cols=74 Identities=14% Similarity=0.332 Sum_probs=58.8
Q ss_pred hhhcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCccccccccccccCCCcc---hHHHHHH
Q 024284 34 IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLD---NLEFLQW 109 (269)
Q Consensus 34 IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~I~k~ipV~kLiKgk~qd---NlEFlQW 109 (269)
..+|.+|-|+|-|++.--|+.+.-...+++.+.-. .+||+-...+=+-.||.+-|.|+..+.-.--| ++-.+-|
T Consensus 151 ~rswrdGLaf~aLIh~~rPDtld~n~ld~qkknk~--~n~~qafe~a~k~Igi~rli~vedivnV~~pDERsimtyv~~ 227 (612)
T COG5069 151 FRSWRDGLAFSALIHDSRPDTLDPNVLDLQKKNKA--LNNFQAFENANKVIGIARLIGVEDIVNVSIPDERSIMTYVSW 227 (612)
T ss_pred HHHhhhhHHHHHHHhhcCCcccCccccchhhcccc--hhHHHHHHHHHHhhchHhhcCcceeeecCCcchHHHHHHHHH
Confidence 46899999999999999999998888888777633 67888888888888999998888777665555 3445555
No 20
>KOG3631 consensus Alpha-parvin and related focal adhesion proteins [Cytoskeleton]
Probab=62.65 E-value=31 Score=33.35 Aligned_cols=94 Identities=17% Similarity=0.313 Sum_probs=76.5
Q ss_pred CHHHHHHHhHhhh---cCCcchhh-hcCCchhhhhhhhhhCCCCcccccccccCCChHHHHHHHHHHHHHHHhcCcccc-
Q 024284 15 GRNELLTWINNRL---QLHLSRIE-EAASGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYKVLQDVFNKLKIEKH- 89 (269)
Q Consensus 15 sR~eLL~WiN~~L---~~~~~kIE-el~sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~KiLQ~af~k~~I~k~- 89 (269)
-+.-|+.++|.-| ++..+.++ |..+|+...-+|..|=--.|||+-....+++..|.++|....-+.++.-|..|+
T Consensus 258 VK~sli~FvNkhLnklnLeVt~LdtQFaDGV~LvLL~GlLEgyFvpL~~F~Ltp~S~eekv~NVsfAfeLm~D~GL~kp~ 337 (365)
T KOG3631|consen 258 VKKSLITFVNKHLNKLNLEVTELDTQFADGVYLVLLMGLLEGYFVPLHHFYLTPNSFEEKVHNVSFAFELMKDGGLEKPK 337 (365)
T ss_pred HHHHHHHHHHHHhhhccceeehhhhhhccchHHHHHHHhhccceeecceeecCCCCHHHHHHHHHHHHHHHHccCcCCCC
Confidence 4678999999766 55666655 788999888888888766799999999999999999999888888888899876
Q ss_pred ccccccccCCCcchHHHHH
Q 024284 90 IEVNKLVKGRPLDNLEFLQ 108 (269)
Q Consensus 90 ipV~kLiKgk~qdNlEFlQ 108 (269)
.-++.++.|.....|-.|.
T Consensus 338 ~rpeDIvN~D~KSTLRvLy 356 (365)
T KOG3631|consen 338 VRPEDIVNKDLKSTLRVLY 356 (365)
T ss_pred CChHHhhcccHHHHHHHHH
Confidence 4578889998776666553
No 21
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=58.34 E-value=24 Score=30.34 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Q 024284 187 QALSKEITDLKLSVDLLEKERDFYFAKLRDI 217 (269)
Q Consensus 187 ~~L~~q~~elk~~ve~LEkERDFYF~KLRdI 217 (269)
..|.+|++.|+..+..+-.|||.|=+|+-..
T Consensus 84 ~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l 114 (135)
T KOG4196|consen 84 AELQQQVEKLKEENSRLRRELDAYKSKYEAL 114 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999999999998887543
No 22
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=47.91 E-value=9.5 Score=27.97 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=19.9
Q ss_pred HHHHHhHhhhcCCcchhhhcCC
Q 024284 18 ELLTWINNRLQLHLSRIEEAAS 39 (269)
Q Consensus 18 eLL~WiN~~L~~~~~kIEel~s 39 (269)
=||..||..|.-+|..+++||.
T Consensus 7 mLlS~VN~kLRD~~~sLd~Lc~ 28 (55)
T PF14056_consen 7 MLLSIVNMKLRDEYSSLDELCY 28 (55)
T ss_pred HHHHHHHHHHHhccCCHHHHHH
Confidence 4799999999999999999874
No 23
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=46.41 E-value=70 Score=24.34 Aligned_cols=26 Identities=19% Similarity=0.301 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHH
Q 024284 192 EITDLKLSVDLLEKERDFYFAKLRDI 217 (269)
Q Consensus 192 q~~elk~~ve~LEkERDFYF~KLRdI 217 (269)
+.++|..=-+..-+||+||..||++=
T Consensus 32 r~e~l~~wqe~~~~e~~~~~~kf~Ea 57 (68)
T PF11577_consen 32 RFEELLAWQEKQKEEREFLERKFQEA 57 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334333445667999999999864
No 24
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton]
Probab=45.47 E-value=32 Score=35.62 Aligned_cols=101 Identities=19% Similarity=0.278 Sum_probs=70.7
Q ss_pred cCCCccCHHHHHHHhHhhhcCCcchhhhcC---------CchhhhhhhhhhCCCCcccccccccCCChHHHHHHHH-HHH
Q 024284 9 DSAYFVGRNELLTWINNRLQLHLSRIEEAA---------SGAVQCQMLDMTYPGVVPMHKVNFDAKTEYDMIQNYK-VLQ 78 (269)
Q Consensus 9 ~~~~~~sR~eLL~WiN~~L~~~~~kIEel~---------sGaayCQlmd~l~Pg~v~l~kVkf~a~~e~e~~~N~K-iLQ 78 (269)
.+.+.+|-.||.+|+++ |.+.+.|=|... +|+-|--+++.++|+-++-.-|+ .+.++.+-+.|.| +.-
T Consensus 497 k~~~~lsdsd~~a~l~s-lgl~~dk~egi~~F~~~a~s~~gv~yl~v~~~i~sel~D~d~v~-~~~~~f~diad~rsl~i 574 (612)
T COG5069 497 KDGCGLSDSDLCAWLGS-LGLKGDKEEGIRSFGDPAGSVSGVFYLDVLKGIHSELVDYDLVT-RGFTEFDDIADARSLAI 574 (612)
T ss_pred cCCCCCCHHHHHHHHHH-hccccCCccceeeccCCccccccchHHHHHHHHhhhhcChhhhh-hhHHHHHHhhhhhhhhc
Confidence 45678899999999995 888877766554 39999999999999988776666 5566778889988 222
Q ss_pred H--HHHhcC-ccccccccccccCCCcchHHHHHHHHHHH
Q 024284 79 D--VFNKLK-IEKHIEVNKLVKGRPLDNLEFLQWLKRYC 114 (269)
Q Consensus 79 ~--af~k~~-I~k~ipV~kLiKgk~qdNlEFlQWfk~f~ 114 (269)
+ .++++| |-+.+|-+ +.+ -..-|+.+.|++.+.
T Consensus 575 s~~ilRs~~aii~~lpe~-in~--~r~~Ldvltfi~slm 610 (612)
T COG5069 575 SSKILRSLGAIIKFLPED-ING--VRPRLDVLTFIESLM 610 (612)
T ss_pred cHHHHHHhhhHheechhh-hcc--cCccchHHHHHHHHh
Confidence 2 566666 33333321 111 134578899998764
No 25
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=45.02 E-value=42 Score=24.42 Aligned_cols=25 Identities=40% Similarity=0.535 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhH
Q 024284 184 QEVQALSKEITDLKLSVDLLEKERD 208 (269)
Q Consensus 184 ~~i~~L~~q~~elk~~ve~LEkERD 208 (269)
.++.+|++++++++...+.|+.|.+
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666666666655543
No 26
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=44.47 E-value=32 Score=25.72 Aligned_cols=28 Identities=29% Similarity=0.477 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 024284 183 AQEVQALSKEITDLKLSVDLLEKERDFY 210 (269)
Q Consensus 183 ~~~i~~L~~q~~elk~~ve~LEkERDFY 210 (269)
.++++.|++++.+|...+..||.|-.++
T Consensus 13 rEEVevLK~~I~eL~~~n~~Le~EN~~L 40 (59)
T PF01166_consen 13 REEVEVLKEQIAELEERNSQLEEENNLL 40 (59)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999997665
No 27
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=43.92 E-value=35 Score=31.70 Aligned_cols=30 Identities=17% Similarity=0.424 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHhhHHHHH
Q 024284 183 AQEVQALSKEITDLKLSVDL--------LEKERDFYFA 212 (269)
Q Consensus 183 ~~~i~~L~~q~~elk~~ve~--------LEkERDFYF~ 212 (269)
..+++.|++|+.+|+..+|. .|+.||+|=.
T Consensus 60 ~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~d 97 (263)
T PRK10803 60 QQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQ 97 (263)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677777787777777766 5678999953
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=42.58 E-value=36 Score=36.10 Aligned_cols=55 Identities=15% Similarity=0.202 Sum_probs=41.1
Q ss_pred hhhcCCchhhhhhhhhhCCCCcccccccccCC---ChHHHHHHHHHHHHHHHhcCccc
Q 024284 34 IEEAASGAVQCQMLDMTYPGVVPMHKVNFDAK---TEYDMIQNYKVLQDVFNKLKIEK 88 (269)
Q Consensus 34 IEel~sGaayCQlmd~l~Pg~v~l~kVkf~a~---~e~e~~~N~KiLQ~af~k~~I~k 88 (269)
-+.|.+|++-|+|.+.|.|-+|+---|-=-+. +..-+.+|..=+=+|-.|+||+-
T Consensus 598 ~aALtDGViLChLaN~lRPRSV~SIHVPSPaV~klsmarcrrNVdnFLeaCRkiGVpE 655 (722)
T KOG0532|consen 598 AAALTDGVILCHLANHLRPRSVASIHVPSPAVPKLSMARCRRNVDNFLEACRKIGVPE 655 (722)
T ss_pred HHHhhcchhhHhhhcccCCCCccceecCCCccchhHHHHHHHhHHHHHHHHHHcCCCh
Confidence 37889999999999999998776544332222 24567788888888889999874
No 29
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=42.29 E-value=43 Score=27.16 Aligned_cols=23 Identities=22% Similarity=0.252 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHH
Q 024284 187 QALSKEITDLKLSVDLLEKERDF 209 (269)
Q Consensus 187 ~~L~~q~~elk~~ve~LEkERDF 209 (269)
.++.+++.+|+..+..|+.|+||
T Consensus 74 ~~~~~ei~~L~~el~~L~~E~di 96 (121)
T PRK09413 74 AAAMKQIKELQRLLGKKTMENEL 96 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666664
No 30
>PF12308 Noelin-1: Neurogenesis glycoprotein; InterPro: IPR022082 This domain family is found in eukaryotes, and is approximately 100 amino acids in length. The family is found in association with PF02191 from PFAM. There are two conserved sequence motifs: SAQ and VQN. Noelin-1 is a glycoprotein which is secreted mainly by postmitotic neurogenic tissues in the developing central and peripheral nervous systems, first appearing after neural tube closure. It is likely that it forms large multimeric complexes.It has a divergent function in neurogenesis. In animal caps neuralized by expression of noggin, co-expression of Noelin-1 causes expression of neuronal differentiation markers several stages before neurogenesis normally occurs in this tissue. Finally, only secreted forms of the protein can activate sensory marker expression, while all forms of the protein can induce early neurogenesis.
Probab=41.87 E-value=83 Score=25.86 Aligned_cols=39 Identities=18% Similarity=0.518 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--hhHHHHHHhHHHHHHhc
Q 024284 182 SAQEVQALSKEITDLKLSVDLLEK--ERDFYFAKLRDIEILCQ 222 (269)
Q Consensus 182 ~~~~i~~L~~q~~elk~~ve~LEk--ERDFYF~KLRdIEiLcQ 222 (269)
-..++..|.++++.+..++|-|.. .|||=| ++..|-+..
T Consensus 38 r~~qlrqllekVqNmSqsievL~~RT~rdlqy--v~~~E~~mk 78 (101)
T PF12308_consen 38 RSRQLRQLLEKVQNMSQSIEVLDLRTQRDLQY--VRKMETQMK 78 (101)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhccchHHH--HHHHHHHHH
Confidence 346888999999999888887654 899876 334444433
No 31
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=41.73 E-value=21 Score=39.02 Aligned_cols=79 Identities=18% Similarity=0.368 Sum_probs=68.0
Q ss_pred hhcCCchhhhhhhhhhCCCCcc-cccccccCCChHHHHHHHHHHHHHHHh-cCccccccccccccCCCcchHHHHHHHHH
Q 024284 35 EEAASGAVQCQMLDMTYPGVVP-MHKVNFDAKTEYDMIQNYKVLQDVFNK-LKIEKHIEVNKLVKGRPLDNLEFLQWLKR 112 (269)
Q Consensus 35 Eel~sGaayCQlmd~l~Pg~v~-l~kVkf~a~~e~e~~~N~KiLQ~af~k-~~I~k~ipV~kLiKgk~qdNlEFlQWfk~ 112 (269)
+--.+|.++|++++.--|.-|+ ..+ -+..+-+.|.++--..+.+ ++|++.++.+..+--..-|-+-.++-...
T Consensus 168 ~sw~~gl~f~A~ih~~Rpdli~~y~~-----lt~~~~~~n~~~A~~iAek~l~i~r~ld~ed~~~~~~pde~aimtyv~~ 242 (890)
T KOG0035|consen 168 TSWKDGLAFCALIHRHRPDLIDQYDK-----LTKQDPVENLNLAFDIAEKFLGIPRLLDAEDIVEAAIPDEKAIMTYVSS 242 (890)
T ss_pred ecccchHHHHHHHHhcChhhhhhhhh-----cCccchhHHhhhhhhhhhhcCCcccccCccccccCCCCchhhhhhhhhh
Confidence 4567899999999999999887 544 4555778999999999999 99999999999999989999999999998
Q ss_pred HHhhhC
Q 024284 113 YCDSVN 118 (269)
Q Consensus 113 f~d~n~ 118 (269)
||..-.
T Consensus 243 ~~~~fS 248 (890)
T KOG0035|consen 243 YYHAFS 248 (890)
T ss_pred cccccc
Confidence 887543
No 32
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=39.74 E-value=91 Score=22.23 Aligned_cols=33 Identities=21% Similarity=0.409 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhc
Q 024284 186 VQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQ 222 (269)
Q Consensus 186 i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ 222 (269)
|.+|.+|++.|+.++..|+. =|++-+..|++-.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~----~fs~yKKa~lFp~ 33 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQA----AFSQYKKAELFPN 33 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHTTT
T ss_pred ChHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCC
Confidence 46788899999999999887 4788888887643
No 33
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=38.76 E-value=62 Score=22.73 Aligned_cols=22 Identities=41% Similarity=0.563 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 024284 185 EVQALSKEITDLKLSVDLLEKE 206 (269)
Q Consensus 185 ~i~~L~~q~~elk~~ve~LEkE 206 (269)
++..|..++..|+..++.|++|
T Consensus 33 ~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 33 EVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcc
Confidence 4455666666666666666665
No 34
>PF15007 CEP44: Centrosomal spindle body, CEP44
Probab=35.19 E-value=35 Score=29.07 Aligned_cols=41 Identities=24% Similarity=0.404 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHhcCccccccccccccCCCcchHHHHHHH
Q 024284 70 MIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWL 110 (269)
Q Consensus 70 ~~~N~KiLQ~af~k~~I~k~ipV~kLiKgk~qdNlEFlQWf 110 (269)
-.+|++.||+.+++++-+..|+...|.+|....=|.++...
T Consensus 2 l~~~l~~L~~~Lr~~~yp~~vd~~~l~~G~p~afLpil~~~ 42 (131)
T PF15007_consen 2 LKGNLRRLEQELRSLKYPDEVDYQGLYKGDPSAFLPILHYA 42 (131)
T ss_pred hhhHHHHHHHHHHHCCCCCccCHHHHhcCCHHHHHHHHHHH
Confidence 35799999999999999999999999999888666666654
No 35
>PF09701 Cas_Cmr5: CRISPR-associated protein (Cas_Cmr5); InterPro: IPR010160 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a family of Cas proteins as represented by TM1791.1 from Thermotoga maritima. This family of Cas proteins are found in both archaeal and bacterial species.; PDB: 2OEB_A 2ZOP_A.
Probab=33.20 E-value=32 Score=28.14 Aligned_cols=15 Identities=47% Similarity=1.190 Sum_probs=12.9
Q ss_pred chHHHHHHHHHHHhh
Q 024284 102 DNLEFLQWLKRYCDS 116 (269)
Q Consensus 102 dNlEFlQWfk~f~d~ 116 (269)
+-|+|+.|+|+|.++
T Consensus 106 e~La~l~WlKRfAea 120 (122)
T PF09701_consen 106 EALAFLNWLKRFAEA 120 (122)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 468899999999875
No 36
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=33.17 E-value=58 Score=30.41 Aligned_cols=36 Identities=19% Similarity=0.403 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhh-HHHHHHhHHHHHHhc
Q 024284 187 QALSKEITDLKLSVDLLEKER-DFYFAKLRDIEILCQ 222 (269)
Q Consensus 187 ~~L~~q~~elk~~ve~LEkER-DFYF~KLRdIEiLcQ 222 (269)
+-+.++++.|+..+-.-+++| |-||.-+|+||-=.+
T Consensus 165 D~v~~d~~~L~~~Lg~~Dr~kLd~yl~sireiE~rl~ 201 (302)
T PF07586_consen 165 DLVREDAKSLRRRLGAEDRQKLDQYLDSIREIEKRLQ 201 (302)
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888887777777777 899999999998543
No 37
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=32.36 E-value=99 Score=28.54 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHH
Q 024284 192 EITDLKLSVDLLEKERDFYFAKLRDIE 218 (269)
Q Consensus 192 q~~elk~~ve~LEkERDFYF~KLRdIE 218 (269)
-|+|++...+.|..||.++=+-||+|.
T Consensus 33 ~L~e~~kE~~~L~~Er~~h~eeLrqI~ 59 (230)
T PF10146_consen 33 CLEEYRKEMEELLQERMAHVEELRQIN 59 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488999999999999999999999874
No 38
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=32.06 E-value=78 Score=23.37 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024284 184 QEVQALSKEITDLKLSVDLLEKE 206 (269)
Q Consensus 184 ~~i~~L~~q~~elk~~ve~LEkE 206 (269)
+.+.+|+.++++|...|+.|..|
T Consensus 3 akid~Ls~dVq~L~~kvdqLs~d 25 (56)
T PF04728_consen 3 AKIDQLSSDVQTLNSKVDQLSSD 25 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777777777765
No 39
>KOG3000 consensus Microtubule-binding protein involved in cell cycle control [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.94 E-value=17 Score=34.96 Aligned_cols=94 Identities=21% Similarity=0.241 Sum_probs=74.2
Q ss_pred ccCHHHHHHHhHhhhcCCcch------------------hhhcCCchhhhhhhhhhC---CCCcccccccccCCChHHHH
Q 024284 13 FVGRNELLTWINNRLQLHLSR------------------IEEAASGAVQCQMLDMTY---PGVVPMHKVNFDAKTEYDMI 71 (269)
Q Consensus 13 ~~sR~eLL~WiN~~L~~~~~k------------------IEel~sGaayCQlmd~l~---Pg~v~l~kVkf~a~~e~e~~ 71 (269)
|..=-|.++|+-.....+|.. +...+.|++-|-+.+... |+. .+ +..+..+.
T Consensus 101 ~qDNlEF~qWfkkffd~~~~g~~yd~~~~R~~~~~~~~~~~~~~~~~s~p~~~~~~~~~~p~~----~~---~~~~~~~~ 173 (295)
T KOG3000|consen 101 FQDNLEFLQWFKKFFDANYGGKGYDALARREGIGIGRSAISEGSKGVSAPKILSPVSSAAPQN----FV---PARTPQTL 173 (295)
T ss_pred ccchHHHHHHHHHHhhccCCccccCHHHHhhcccccccCccccccccccccccccccccCccc----CC---CccCcccc
Confidence 444568999999999988865 677888888888844443 442 12 67788888
Q ss_pred HHHHHHHHHHHhcCccccccccccccCCCcchHHHHHHHHHHHhhhC
Q 024284 72 QNYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVN 118 (269)
Q Consensus 72 ~N~KiLQ~af~k~~I~k~ipV~kLiKgk~qdNlEFlQWfk~f~d~n~ 118 (269)
.|-+.-+..+.+-.+..+ ++.++ .|++.++-||++.+...+.
T Consensus 174 ~~~~~~~~~~~~~~~~~~-~~~~~----~qe~~~l~~~l~~~~~~~~ 215 (295)
T KOG3000|consen 174 RNNKPCVEFGGKPNIALY-PVDKL----KQELEELTQQLTELKTTIA 215 (295)
T ss_pred cCCCCCcccccccccccc-cchhh----hHHHHHHHHHHHHHHHhhh
Confidence 999999988888888888 88888 7999999999999976553
No 40
>smart00338 BRLZ basic region leucin zipper.
Probab=31.50 E-value=1.3e+02 Score=21.56 Aligned_cols=28 Identities=25% Similarity=0.303 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 024284 184 QEVQALSKEITDLKLSVDLLEKERDFYF 211 (269)
Q Consensus 184 ~~i~~L~~q~~elk~~ve~LEkERDFYF 211 (269)
.++..|.++..+|+..++.|+.|-+-+=
T Consensus 33 ~~~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 33 RKVEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777788888888888888765443
No 41
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=30.93 E-value=73 Score=32.56 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHh
Q 024284 182 SAQEVQALSKEITDLKLSVDLLEKE 206 (269)
Q Consensus 182 ~~~~i~~L~~q~~elk~~ve~LEkE 206 (269)
...+|++|++|++.|+.+|..||++
T Consensus 23 ~a~~i~~L~~ql~aLq~~v~eL~~~ 47 (514)
T PF11336_consen 23 TADQIKALQAQLQALQDQVNELRAK 47 (514)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999884
No 42
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.64 E-value=34 Score=35.10 Aligned_cols=17 Identities=29% Similarity=0.481 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHhhH
Q 024284 192 EITDLKLSVDLLEKERD 208 (269)
Q Consensus 192 q~~elk~~ve~LEkERD 208 (269)
|+++|+.+++.|++|.+
T Consensus 32 kie~L~kql~~Lk~q~~ 48 (489)
T PF11853_consen 32 KIEALKKQLEELKAQQD 48 (489)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 66666666666666666
No 43
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=28.58 E-value=65 Score=31.05 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q 024284 184 QEVQALSKEITDLKLSVDLLEKERDFYFAK 213 (269)
Q Consensus 184 ~~i~~L~~q~~elk~~ve~LEkERDFYF~K 213 (269)
.+++.|+...++||.++..||||=+ |+-+
T Consensus 255 ge~~~Le~rN~~LK~qa~~lerEI~-ylKq 283 (294)
T KOG4571|consen 255 GELEGLEKRNEELKDQASELEREIR-YLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 3667888889999999999999955 4433
No 44
>COG4238 Murein lipoprotein [Cell envelope biogenesis, outer membrane]
Probab=27.61 E-value=1.1e+02 Score=24.10 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=23.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 024284 181 NSAQEVQALSKEITDLKLSVDLLEKERD 208 (269)
Q Consensus 181 ~~~~~i~~L~~q~~elk~~ve~LEkERD 208 (269)
.+.+.+.+|..++++|-..++.||..|+
T Consensus 22 ~s~aK~dqlss~vq~LnAkv~qLe~dv~ 49 (78)
T COG4238 22 SSNAKIDQLSSDVQTLNAKVDQLENDVN 49 (78)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999999999999999998664
No 45
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=27.42 E-value=1.1e+02 Score=29.77 Aligned_cols=29 Identities=28% Similarity=0.360 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhH
Q 024284 187 QALSKEITDLKLSVDLLEKERDFYFAKLR 215 (269)
Q Consensus 187 ~~L~~q~~elk~~ve~LEkERDFYF~KLR 215 (269)
.+|..++..+....+.+..|||+|=.|--
T Consensus 143 ~qLe~d~qs~lDEkeEl~~ERD~yk~K~~ 171 (319)
T PF09789_consen 143 EQLERDLQSLLDEKEELVTERDAYKCKAH 171 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555668889999998864
No 46
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=26.93 E-value=1e+02 Score=25.95 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 024284 184 QEVQALSKEITDLKLSVDLLEKE 206 (269)
Q Consensus 184 ~~i~~L~~q~~elk~~ve~LEkE 206 (269)
++++-|++|+.||......||+|
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~E 89 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERE 89 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666666
No 47
>PF15444 TMEM247: Transmembrane protein 247
Probab=24.92 E-value=5.1e+02 Score=23.72 Aligned_cols=36 Identities=19% Similarity=0.364 Sum_probs=25.1
Q ss_pred ccccccccccccCCCcchHHHHHHHHHHHhhhCCCCCCCCCChhhhh
Q 024284 86 IEKHIEVNKLVKGRPLDNLEFLQWLKRYCDSVNGGIMNENYNPVERR 132 (269)
Q Consensus 86 I~k~ipV~kLiKgk~qdNlEFlQWfk~f~d~n~~~~~~~~Yd~~~rR 132 (269)
.+|.+|.+....||....|| +-.+. ...+||-++.-
T Consensus 21 ~pk~vp~d~~segkpra~le----------aes~k-pdSSyd~LEe~ 56 (218)
T PF15444_consen 21 FPKMVPGDSMSEGKPRASLE----------AESPK-PDSSYDYLEEM 56 (218)
T ss_pred CCCCCCCCCCCCCCcccccc----------cCCCC-CcchhhHHHhc
Confidence 47889999999999987775 22221 12468888754
No 48
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=24.38 E-value=94 Score=30.82 Aligned_cols=26 Identities=42% Similarity=0.484 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhh
Q 024284 182 SAQEVQALSKEITDLKLSVDLLEKER 207 (269)
Q Consensus 182 ~~~~i~~L~~q~~elk~~ve~LEkER 207 (269)
-++|.+.|++|+++|+..++.||.|+
T Consensus 37 Lr~EN~~LKkEN~~Lk~eVerLE~e~ 62 (420)
T PF07407_consen 37 LRMENHSLKKENNDLKIEVERLENEM 62 (420)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 35677889999999999999998886
No 49
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=24.30 E-value=77 Score=32.57 Aligned_cols=23 Identities=35% Similarity=0.510 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024284 183 AQEVQALSKEITDLKLSVDLLEK 205 (269)
Q Consensus 183 ~~~i~~L~~q~~elk~~ve~LEk 205 (269)
.++|++|++|+++||.+++.|.+
T Consensus 30 ~qkie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 30 LQKIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHHHhhccccc
Confidence 44899999999999999887765
No 50
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=23.04 E-value=73 Score=23.51 Aligned_cols=40 Identities=15% Similarity=0.325 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhcCccccccccccccCCCcchHHHHHHHHH
Q 024284 73 NYKVLQDVFNKLKIEKHIEVNKLVKGRPLDNLEFLQWLKR 112 (269)
Q Consensus 73 N~KiLQ~af~k~~I~k~ipV~kLiKgk~qdNlEFlQWfk~ 112 (269)
+.+.|++-|.+++.-..-|++.|+.-.-..-=+...||..
T Consensus 9 d~~pL~~Yy~~h~~L~E~DL~~L~~kS~ms~qqVr~WFa~ 48 (56)
T PF11569_consen 9 DIQPLEDYYLKHKQLQEEDLDELCDKSRMSYQQVRDWFAE 48 (56)
T ss_dssp --HHHHHHHHHT----TTHHHHHHHHTT--HHHHHHHHHH
T ss_pred chHHHHHHHHHcCCccHhhHHHHHHHHCCCHHHHHHHHHH
Confidence 4567999999999988899999998766666688999864
No 51
>KOG3977 consensus Troponin I [Cytoskeleton]
Probab=22.41 E-value=84 Score=28.86 Aligned_cols=40 Identities=35% Similarity=0.401 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhcCCCCCChhHHHHH
Q 024284 189 LSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPELENLPVRISG 235 (269)
Q Consensus 189 L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~e~e~~~~~~~I 235 (269)
|+.-..+|...|+.||.|| | |||..|+.++.+-.++..+|
T Consensus 93 Lq~ly~~l~arv~~leEEk--Y-----Di~~~v~qt~~EIndLtikv 132 (221)
T KOG3977|consen 93 LQDLYRELHARVDALEEEK--Y-----DIEAKVTQTETEINDLTIKV 132 (221)
T ss_pred HHHHHHHHHHHHHHHHHhh--c-----chhheeehhhhhHHHHHHHH
Confidence 5556788999999999997 3 99999998765444443333
No 52
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=22.28 E-value=1.4e+02 Score=22.99 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024284 183 AQEVQALSKEITDLKLSVDLLEK 205 (269)
Q Consensus 183 ~~~i~~L~~q~~elk~~ve~LEk 205 (269)
.+.+++|.++.+.|+..|+.||+
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888888999999999886
No 53
>PF14282 FlxA: FlxA-like protein
Probab=21.72 E-value=2e+02 Score=23.08 Aligned_cols=23 Identities=22% Similarity=0.419 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 024284 183 AQEVQALSKEITDLKLSVDLLEK 205 (269)
Q Consensus 183 ~~~i~~L~~q~~elk~~ve~LEk 205 (269)
..+|+.|..++..|+..+..|..
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56777777777777766666654
No 54
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=21.63 E-value=4.5e+02 Score=26.37 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHH
Q 024284 103 NLEFLQWLKRYC 114 (269)
Q Consensus 103 NlEFlQWfk~f~ 114 (269)
=-||.+|+|.-|
T Consensus 124 PrEfA~likNkF 135 (395)
T PF10267_consen 124 PREFAHLIKNKF 135 (395)
T ss_pred cHHHHhcccCCC
Confidence 358999887544
No 55
>TIGR01881 cas_Cmr5 CRISPR-associated protein, Cmr5 family. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family, represented by TM1791.1 of Thermotoga maritima, is found in both archaeal and bacterial species as part of the 6-gene CRISPR RAMP module.
Probab=21.38 E-value=68 Score=26.89 Aligned_cols=51 Identities=20% Similarity=0.391 Sum_probs=36.1
Q ss_pred hHHHHHHHHHHHHHHHhcCcc-cc-ccccccccCCCc-------chHHHHHHHHHHHhhh
Q 024284 67 EYDMIQNYKVLQDVFNKLKIE-KH-IEVNKLVKGRPL-------DNLEFLQWLKRYCDSV 117 (269)
Q Consensus 67 e~e~~~N~KiLQ~af~k~~I~-k~-ipV~kLiKgk~q-------dNlEFlQWfk~f~d~n 117 (269)
+..|..=++.|...|.+.++. +. -.++.|+.+.++ .-|+++.|+|+|-++.
T Consensus 65 ~~~y~~l~~~l~~~L~~~~~~~~~~~l~~~il~~~~~~y~~~T~eaL~~l~WLKRfAea~ 124 (127)
T TIGR01881 65 ETSYTKYYAHILYWLKERELVDKFKNALKELMEKDYSDSRIATEEALRYLNWLKRLAEAL 124 (127)
T ss_pred HHHHHHHHHHHHHHHHHcccccchHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666678888888887643 22 357777777543 4578999999998864
No 56
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=20.70 E-value=82 Score=29.45 Aligned_cols=40 Identities=15% Similarity=0.301 Sum_probs=36.8
Q ss_pred cCCChHHHHHHHHHHHHHHHhcCccccccccccccCCCcc
Q 024284 63 DAKTEYDMIQNYKVLQDVFNKLKIEKHIEVNKLVKGRPLD 102 (269)
Q Consensus 63 ~a~~e~e~~~N~KiLQ~af~k~~I~k~ipV~kLiKgk~qd 102 (269)
++..|+||+.=.++|...+.|+.++.+--++.|.++..+.
T Consensus 17 ~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~ 56 (262)
T PF14225_consen 17 ESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQL 56 (262)
T ss_pred cCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCcc
Confidence 5568999999999999999999999998899999998876
No 57
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.69 E-value=3.3e+02 Score=21.18 Aligned_cols=42 Identities=19% Similarity=0.361 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHhcCCC
Q 024284 184 QEVQALSKEITDLKLSVDLLEKERDFYFAKLRDIEILCQTPE 225 (269)
Q Consensus 184 ~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdIEiLcQ~~e 225 (269)
..|++|+..+.|....++.+..-=+.-.+||.|.+--.+++.
T Consensus 22 ~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~~~~~ 63 (72)
T COG2900 22 QTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSAIASP 63 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCC
Confidence 457899999999999999998888899999999987766653
No 58
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=20.10 E-value=2.9e+02 Score=21.92 Aligned_cols=36 Identities=25% Similarity=0.455 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHH
Q 024284 182 SAQEVQALSKEITDLKLSVDLLEKERDFYFAKLRDI 217 (269)
Q Consensus 182 ~~~~i~~L~~q~~elk~~ve~LEkERDFYF~KLRdI 217 (269)
..++++.++.++..|...++.||+=-|--.++||.+
T Consensus 24 ~~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~L 59 (83)
T PF03670_consen 24 DEEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQEL 59 (83)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 356889999999999999999999999999999864
Done!