BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 024285
(269 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OPW|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 (Apo)
pdb|3OBZ|A Chain A, Crystal Structure Of Human Phytanoyl-Coa Dioxygenase
Phyhd1 2- Oxoglutarate And Iron Complex
Length = 291
Score = 247 bits (630), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 128/264 (48%), Positives = 168/264 (63%), Gaps = 15/264 (5%)
Query: 19 GYVVLESFASDEEIEAMRKQMDHLLDGFD----CSTSSVFSTTNQQKV----TDDYFYES 70
G++VLE F S EE AM++++ ++ D C T FST ++++ + DYF S
Sbjct: 16 GFLVLEGFLSAEECVAMQQRIGEIVAEMDVPLHCRTE--FSTQEEEQLRAQGSTDYFLSS 73
Query: 71 AEKISFFFEEKAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLLHSLGYK 130
+KI FFFE+ F + GN P E SINK+GHALH DPVFK + S K L SLG +
Sbjct: 74 GDKIRFFFEKGVFDEKGNFLVPPEKSINKIGHALHAHDPVFKSITHSFKVQTLARSLGLQ 133
Query: 131 RPVDIQSMYIFKQPGIGGEVVPHQDNSFLITEP-STCTGLWLALEDATIINGCLWAIPGS 189
PV +QSMYIFKQP GGEV PHQD SFL TEP G+W+A+EDAT+ NGCLW IPGS
Sbjct: 134 MPVVVQSMYIFKQPHFGGEVSPHQDASFLYTEPLGRVLGVWIAVEDATLENGCLWFIPGS 193
Query: 190 HKNGLVRRFIRG----EEGVYFDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQS 245
H +G+ RR +R G F P+ D + FVP V+ G+LVLIHG+++H+S +N S
Sbjct: 194 HTSGVSRRMVRAPVGSAPGTSFLGSEPARDNSLFVPTPVQRGALVLIHGEVVHKSKQNLS 253
Query: 246 SKSRHAYSLHVVETDGCRWSQENW 269
+SR AY+ H++E G WS ENW
Sbjct: 254 DRSRQAYTFHLMEASGTTWSPENW 277
>pdb|2A1X|A Chain A, Human Phytanoyl-Coa 2-Hydroxylase In Complex With Iron And
2- Oxoglutarate
Length = 308
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 65/147 (44%), Gaps = 14/147 (9%)
Query: 135 IQSMYIFKQPGIGGEVVPH---QDNSFLITEPS-TCTGLWLALEDATIINGCLWAIPGSH 190
+ +M I K P G + H QD + PS W A+E + NGCL +PG+H
Sbjct: 124 MHTMLINKPPDSGKKTSRHPLHQDLHYFPFRPSDLIVCAWTAMEHISRNNGCLVVLPGTH 183
Query: 191 KNGLV-RRFIRGEEGV-YFDRPPPSYDQNDF-VPIEVKAGSLVLIHGDLIHQSFENQSSK 247
K L + + E GV Y++N V + ++ G V H LIH S +N++
Sbjct: 184 KGSLKPHDYPKWEGGVNKMFHGIQDYEENKARVHLVMEKGDTVFFHPLLIHGSGQNKTQG 243
Query: 248 SRHAYSLHVVETDGCRW------SQEN 268
R A S H D C + SQEN
Sbjct: 244 FRKAISCHFASAD-CHYIDVKGTSQEN 269
>pdb|2FCT|A Chain A, Syrb2 With Fe(Ii), Chloride, And Alpha-Ketoglutarate
pdb|2FCT|B Chain B, Syrb2 With Fe(Ii), Chloride, And Alpha-Ketoglutarate
pdb|2FCU|A Chain A, Syrb2 With Alpha-Ketoglutarate
pdb|2FCU|B Chain B, Syrb2 With Alpha-Ketoglutarate
pdb|2FCV|A Chain A, Syrb2 With Fe(Ii), Bromide, And Alpha-Ketoglutarate
pdb|2FCV|B Chain B, Syrb2 With Fe(Ii), Bromide, And Alpha-Ketoglutarate
Length = 313
Score = 38.1 bits (87), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 26/97 (26%)
Query: 169 LWLALEDATIINGCLWAIPGSH-----------------KNGLVRRFIRGEEGVY-FDRP 210
+W A DA I NGCL IPG+ N +V+ +R G + +D
Sbjct: 147 VWTAFTDANIANGCLQFIPGTQNSMNYDETKRMTYEPDANNSVVKDGVR--RGFFGYDYR 204
Query: 211 PPSYDQN------DFVPIEVKAGSLVLIHGDLIHQSF 241
D+N VP+++KAG ++ L+H S+
Sbjct: 205 QLQIDENWKPDEASAVPMQMKAGQFIIFWSTLMHASY 241
>pdb|3GJA|A Chain A, Cytc3
pdb|3GJA|B Chain B, Cytc3
pdb|3GJB|A Chain A, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
pdb|3GJB|B Chain B, Cytc3 With Fe(Ii) And Alpha-Ketoglutarate
Length = 319
Score = 33.5 bits (75), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/115 (23%), Positives = 45/115 (39%), Gaps = 24/115 (20%)
Query: 169 LWLALEDATIINGCLWAIPGSH----------------------KNGLVRRFIRGEEGVY 206
+W A +T NGCL +PG+H K+G+ R F +
Sbjct: 149 VWTAFTHSTEQNGCLQLMPGTHTSMNYDESKGMDYDADAINQREKDGIKRGFFGYDYRSL 208
Query: 207 FDRPPPSYDQNDFVPIEVKAGSLVLIHGDLIHQSFENQSSKS--RHAYSLHVVET 259
P D++ P+ +K G V+ + +H S + SK+ R ++ V T
Sbjct: 209 QKDPDWKPDESQAYPMVLKPGEAVIFWSNTMHASLPHTGSKTDYRMGFAARYVPT 263
>pdb|2RDN|A Chain A, Crystal Structure Of Ptlh With Akg And Ent-1pl Bound
pdb|2RDQ|A Chain A, Crystal Structure Of Ptlh With FeALPHA KETOGLUTARATE BOUND
pdb|2RDR|A Chain A, Crystal Structure Of Ptlh With Fe/oxalylglycine Bound
pdb|2RDS|A Chain A, Crystal Structure Of Ptlh With FeOXALYLGLYCINE AND ENT-1-
Deoxypentalenic Acid Bound
Length = 288
Score = 30.8 bits (68), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 43/111 (38%), Gaps = 17/111 (15%)
Query: 150 VVPHQDNSFLITEPSTCTGLWLALEDATIINGCLWAIPGSHKNGL--------VRRFIRG 201
+ P + F I W+ L T +G + GSH+ G RRF
Sbjct: 136 LTPFHQDGFYIGPNQDFRTFWIPLIRTTRESGGVALADGSHRRGKRDHVLNESFRRFGHP 195
Query: 202 EEGVYFDRPPPSYDQNDFV---PIEVKAGSLVLIHGDLIHQSFENQSSKSR 249
G+ PP +++ + P+E G ++L H + H+S N S R
Sbjct: 196 VRGI----PPTEVSEDEHLLHSPME--PGDILLFHAHMCHKSIPNLSKDPR 240
>pdb|2HLQ|A Chain A, Crystal Structure Of The Extracellular Domain Of The Type
Ii Bmp Receptor
pdb|2HLR|A Chain A, Crystal Structure Of The Extracellular Domain Of The Type
Ii Bmp Receptor
Length = 100
Score = 30.4 bits (67), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 5/39 (12%)
Query: 137 SMYIFKQP-----GIGGEVVPHQDNSFLITEPSTCTGLW 170
++ FK P GIG + H++ + L ++ STC GLW
Sbjct: 1 ALCAFKDPYQQDLGIGESRISHENGTILCSKGSTCYGLW 39
>pdb|3EMR|A Chain A, Crystal Structure Analysis Of The Ectoine Hydroxylase Ectd
From Salibacillus Salexigens
Length = 310
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 49/116 (42%), Gaps = 9/116 (7%)
Query: 81 KAFGDDGNLKQPKELSINKVGHALHELDPVFKKFSRSEKTSNLL-HSLGYKRPVDIQSMY 139
K D +++P+ I + H +H+ D F+ + ++ +++ H LG V +
Sbjct: 75 KDVASDKVIREPESNDIRSIFH-VHQDDNYFQDVANDKRILDIVRHLLGSD--VYVHQSR 131
Query: 140 IFKQPGIGG-EVVPHQDNSFLITEPST----CTGLWLALEDATIINGCLWAIPGSH 190
I +PG G E H D E + +AL D NG L IPGSH
Sbjct: 132 INYKPGFKGKEFDWHSDFETWHVEDGXPRXRAISVSIALSDNYSFNGPLXLIPGSH 187
>pdb|4G4I|A Chain A, Crystal Structure Of Glucuronoyl Esterase S213a Mutant
From Sporotrichum Thermophile Determined At 1.9 A
Resolution
pdb|4G4J|A Chain A, Crystal Structure Of Glucuronoyl Esterase S213a Mutant
From Sporotrichum Thermophile In Complex With Methyl
4-o-methyl-beta-d- Glucopyranuronate Determined At 2.35
A Resolution
Length = 433
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 39 MDHLLDGFD-CSTSSVFSTTNQQKVTDDYFYESAEKIS 75
M+H+ + D CS S + T N K+ D + S EK++
Sbjct: 35 MNHIFERQDTCSVSDNYPTVNSAKLPDPFTTASGEKVT 72
>pdb|4G4G|A Chain A, Crystal Structure Of Recombinant Glucuronoyl Esterase
From Sporotrichum Thermophile Determined At 1.55 A
Resolution
Length = 433
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 39 MDHLLDGFD-CSTSSVFSTTNQQKVTDDYFYESAEKIS 75
M+H+ + D CS S + T N K+ D + S EK++
Sbjct: 35 MNHIFERQDTCSVSDNYPTVNSAKLPDPFTTASGEKVT 72
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,096,792
Number of Sequences: 62578
Number of extensions: 335757
Number of successful extensions: 841
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 832
Number of HSP's gapped (non-prelim): 9
length of query: 269
length of database: 14,973,337
effective HSP length: 97
effective length of query: 172
effective length of database: 8,903,271
effective search space: 1531362612
effective search space used: 1531362612
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)